Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 182 of 259
Found at i:58938696 original size:16 final size:16
Alignment explanation
Indices: 58938658--58938696 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
58938648 ATCTCAAAAA
*
58938658 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
58938674 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
58938690 AATAACT
1 AAAAACT
58938697 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:58939705 original size:87 final size:87
Alignment explanation
Indices: 58939505--58939732 Score: 230
Period size: 87 Copynumber: 2.6 Consensus size: 87
58939495 TTATTCTTTA
* * * * *
58939505 CTCGGCATGTGATCCTG-AGCTTAACTCATTTCTCGCAATATGAATTGACTCTTTAAAACTAAAC
1 CTCGGCATGTGA-CCCGAAGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAACTAAAC
*
58939569 ATTAAAAACAGAAATTGAAAATAG
64 ATTAAAAACAGAAATTGAAAATAC
* * *
58939593 CTCAGCACGTGAGCC-AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAC-AAA-A
1 CTCGGCATGTGACCCGAA-GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACA
* * **
58939655 TTTGTAAAATAGATTTTGAAAATAC
65 -TT-AAAAACAGAAATTGAAAATAC
* * * *
58939680 CTCGGTATGTGACCCGAAGCTCAACTCACCTCTTGTAATATGAGTTGATTTTT
1 CTCGGCATGTGACCCGAAGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
58939733 GCAAAGCATA
Statistics
Matches: 115, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
85 1 0.01
86 5 0.04
87 70 0.61
88 39 0.34
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (87 bp):
CTCGGCATGTGACCCGAAGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAACTAAACAT
TAAAAACAGAAATTGAAAATAC
Found at i:58939785 original size:103 final size:105
Alignment explanation
Indices: 58939670--58939867 Score: 285
Period size: 103 Copynumber: 1.9 Consensus size: 105
58939660 AAAATAGATT
* * *
58939670 TTGAAAATACCTCGGTATGTGACCCGAAGCTCAACTCACCTCTTGTAATATGAGTTGA-TTTTT-
1 TTGAAAATACCTCGGCATGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
*
58939733 GCAAAGCATAAATTGAAAA-AAAAATAAAAATAAAAATCAA
66 GCAAA-CATAAATTGAAAATAAAAAGAAAAATAAAAATCAA
* * * *
58939773 TTGAAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAATACCTCGGCATGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
58939838 GGCAAACATAAATTGAAAATAAAAAGAAAA
65 GGCAAACATAAATTGAAAATAAAAAGAAAA
58939868 TATCTCAGCG
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
103 51 0.61
105 18 0.22
106 14 0.17
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (105 bp):
TTGAAAATACCTCGGCATGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG
GCAAACATAAATTGAAAATAAAAAGAAAAATAAAAATCAA
Found at i:58940124 original size:14 final size:14
Alignment explanation
Indices: 58940101--58940135 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
58940091 CTGATTTTTT
58940101 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
58940115 TTGAAGAACAGAAA
1 TTGAAAAACAGAAA
*
58940129 TGGAAAA
1 TTGAAAA
58940136 CACCTCAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.60, C:0.06, G:0.20, T:0.14
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:58940129 original size:88 final size:88
Alignment explanation
Indices: 58939797--58940205 Score: 436
Period size: 88 Copynumber: 4.7 Consensus size: 88
58939787 GCGTGTGATC
* ** * *
58939797 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGGCAAACATAAATTGAA-AATA-A
1 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAGAACAGA
* * * *
58939860 AA-AGAAAATATCTCAGCGTGTCC
66 AATGGAAAACACCTCAGCG-GTCT
* * * * *
58939883 TGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTTGGAAAAACA-AAATTTGAAAAATAG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAA-TTGAAGAACAG
* * * * *
58939947 AATTTGAAAATACCTCAACAGGTGAGT
65 AAATGGAAAACACCTCAGC-GGT--CT
** * * * *
58939974 CAAGGATCAACTCACCACTCGCAATATGAGCTGACTTTTTTGAAACACAGAAATTGAAGAACAGA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAGAACAGA
58940039 AATGGAAAACACCTCAGC-GTCT
66 AATGGAAAACACCTCAGCGGTCT
* *
58940061 TGAGGTTCAACTCACCTCTCGCAATAAGAGCTGATTTTTTTTGAAAAACAGAAATTGAAGAACAG
1 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTGAAAAACAGAAATTGAAGAACAG
*
58940126 AAATGGAAAACACCTCAG-TGTCT
65 AAATGGAAAACACCTCAGCGGTCT
* * *
58940149 TGAGGTTCAACTTACCTCTCGCAATATGAGCTGA-TTTTTTGAAAGACAGAAATTGAA
1 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAA
58940206 AATACCTCAA
Statistics
Matches: 277, Mismatches: 36, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
85 3 0.01
86 72 0.26
87 34 0.12
88 84 0.30
89 16 0.06
90 1 0.00
91 64 0.23
92 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (88 bp):
TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAGAACAGA
AATGGAAAACACCTCAGCGGTCT
Found at i:58940525 original size:220 final size:220
Alignment explanation
Indices: 58940115--58943891 Score: 4640
Period size: 220 Copynumber: 16.7 Consensus size: 220
58940105 AAAACAGAAA
* * * *
58940115 TTGAAGAACAGAAATGGAAAACACCTC-A-GTGTCTTGAGGTTCAACTTACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
58940178 GCTGATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* *
58940243 GTAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTCAGGTTCAACTCA
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
*
58940308 CCTATCACAATATGAGTTGATTTTT
196 CCTATCGCAATATGAGTTGATTTTT
*
58940333 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
58940398 GCTAATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTC
66 GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
58940463 GCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
58940528 CCTATCGCAATATGAGTTGATTTTT
196 CCTATCGCAATATGAGTTGATTTTT
58940553 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
58940618 GCTGATTTTTTTAAAAGACAGAAATTGAAAATACTTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
58940683 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
130 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
58940748 ACCTATCGCAATATGAGTTGA-TTTT
195 ACCTATCGCAATATGAGTTGATTTTT
*
58940773 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * *
58940838 GTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCGCCTCT
66 GCTGATTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
** * * * **
58940903 CGCAATATGAGCTAGTTTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAGCGTGTCCTGAGAC
130 CGCAATAT--G--AGTTGATTTTTGACAA-ACAAAAATTGAAATTACCTCAGC--GTCTTGAGGT
58940967 TCAACTCACCTATCGCAATATGAGTTGATTTTT
188 TCAACTCACCTATCGCAATATGAGTTGATTTTT
* *
58941000 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * * * *
58941065 GTTGA-GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGTTCAACTCACTTCT
66 GCTGATTTTTTTA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* * * *
58941128 CGCAATATGAGTTAATTTTTTTGGAAAAAGAAAATTTGAAAAACAGAATTTGAAAATACCTCAGC
130 CGCAATATGAGTTGA--TTTTT-------G-ACA----AACAA-A-AA-TTGAAATTACCTCAGC
* * * *
58941193 GT-GTGA-G-TCAAGGCTCAACTCACCACTTGCAATATGAGCTGATTTTT
178 GTCTTGAGGTTCAA--CTC-A--C-CTA-TCGCAATATGAGTTGATTTTT
* *
58941240 TTGAAACACAGAAATTGAAGAACAGAAATGGAAAACACTTC-A-GCGTCTTGAGGTTCAACTCAC
1 TTGAAAAACAGAAATT---G---A-AAAT-----AC-C-TCAACGTGTCTTGAGGTTCAACTCAC
58941303 CTCTCGCAATATGAGCTGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGA
52 CTCTCGCAATATGAGCTGA--TTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGA
58941368 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCG
114 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCG
* *
58941433 TCTTCAGGTTCAACTCACCTATCGTAATATGAGTTGA-TTTT
179 TCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTT
58941474 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
58941539 GCTGATTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
58941604 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
58941669 CCTATCGCAATATGAGTTGATTTTT
196 CCTATCGCAATATGAGTTGATTTTT
*
58941694 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAACATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
58941759 GCTGA-TTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* * *
58941823 GCAATATGAGTT-AATTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACT
58941887 CACCTATCGCAATATGAGTTGATTTTT
194 CACCTATCGCAATATGAGTTGATTTTT
* * *
58941914 TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * * * *
58941979 GTTGA-GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACTTCT
66 GCTGATTTTTTTA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* * *
58942042 CGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACAGAATTTGAAAATACCTCAG
130 CGCAATATGAGTTGA---TTTTT-------G-ACA----AACAA-A-AA-TTGAAATTACCTCAG
* * * *
58942107 GGT-GTGA-G-TCAAGGCTCAACCCACCACTCGCAATATGAGCTGATTTTT
177 CGTCTTGAGGTTCAA--CTC-A--C-CTA-TCGCAATATGAGTTGATTTTT
* ** * *
58942155 TTGAAACACAGAAATTGAAGAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCT
1 TTGAAAAACAGAAATTGAA-AAT--ACCT------CA--AC-GTGTCTTGAGGTTCAACTCACCT
*
58942220 CTCGCAATATGAGCTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
54 CTCGCAATATGAGCTGA-TTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
*
58942285 TCAACTCACCTCTCGCAATATGATTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT
117 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT
*
58942350 TGAGGTTCAACTCACCTATTGCAATATGAGTTGATTTTT
182 TGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTT
*
58942389 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
58942454 GCTGATTTTTTTGAAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
58942519 GCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
*
58942584 CCTATTGCAATATGAGTTGATTTTT
196 CCTATCGCAATATGAGTTGATTTTT
* *
58942609 TTGAAAAACAAAAATTGAAAATACCTCAACTTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
58942674 GCTGATTTTTATTGAAAGACGGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
66 GCTGATTTTT-TT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
58942739 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAA
129 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGT--CTTGAGGTTCAA
*
58942804 CTCACCTATCACAATATGAGTTGATTTTT
192 CTCACCTATCGCAATATGAGTTGATTTTT
* * *
58942833 TTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * ** * *
58942898 GTTGA-GTTTTGACAA-ACAAAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACTTCT
66 GCTGATTTTTTTA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
* * *
58942961 CGCAATATGAGTTGATTTTTTTTGGAAAAGGAAAATTTGAAAAACAGAATTTGAAAATACCTCAG
130 CGCAATATGAGTTGA---TTTTT-------G-ACA----AACAA-A-AA-TTGAAATTACCTCAG
* * * *
58943026 CGT-GTGA-G-TCAAGGCTCAACTCACCACTCGCGATATGAGCTGATTTTT
177 CGTCTTGAGGTTCAA--CTC-A--C-CTA-TCGCAATATGAGTTGATTTTT
* *
58943074 TTGAAACACAGAAATTGAAGTACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCAC
1 TTGAAAAACAGAAATT---G---A-AAAT-------ACCTCAACGTGTCTTGAGGTTCAACTCAC
* * *
58943137 CTATTGCAATATGAGCTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
52 CTCTCGCAATATGAGCTGATTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
* * * * * * *
58943202 TTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA-AGACAGAAATTAAAAATACATCAACG
116 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTC-A-G
* * *
58943266 TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTT
177 CGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTT
* * * * * *
58943308 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTAAGGTTCAACTCGCCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
58943371 GCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 GCTGATTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
58943436 CGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
130 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
58943501 ACCTATCGCAATATGAGTTGA-TTTT
195 ACCTATCGCAATATGAGTTGATTTTT
58943526 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* *
58943591 GCTGATTTTTTAAAAGACAGAAAGTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
* * *
58943656 TCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACT
131 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACT
* *
58943721 CACCTATCACAATATGAGTTGAATTTT
194 CACCTATCGCAATATGAGTTGATTTTT
* * *
58943748 TTGAAAAACAGAAATTGAAAATACTTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
* * * * * * * *
58943813 GTTGA--GTTTT---GACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTT
66 GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
58943873 GCAATATGAGTTGATTTTT
131 GCAATATGAGTTGATTTTT
58943892 TTAGAAACAT
Statistics
Matches: 3141, Mismatches: 249, Indels: 339
0.84 0.07 0.09
Matches are distributed among these distances:
217 98 0.03
218 90 0.03
219 322 0.10
220 1011 0.32
221 245 0.08
222 251 0.08
223 12 0.00
224 142 0.05
225 53 0.02
226 41 0.01
227 78 0.02
228 2 0.00
230 1 0.00
231 7 0.00
232 5 0.00
233 7 0.00
234 79 0.03
235 25 0.01
236 42 0.01
237 10 0.00
238 50 0.02
239 64 0.02
240 52 0.02
241 88 0.03
242 12 0.00
243 5 0.00
244 3 0.00
245 3 0.00
246 5 0.00
247 7 0.00
248 4 0.00
250 2 0.00
252 39 0.01
253 78 0.02
254 21 0.01
255 73 0.02
256 114 0.04
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (220 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
GCTGATTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
CCTATCGCAATATGAGTTGATTTTT
Found at i:58941327 original size:87 final size:87
Alignment explanation
Indices: 58941095--58941349 Score: 262
Period size: 92 Copynumber: 2.8 Consensus size: 87
58941085 AATTGAAATT
* * * * *
58941095 ACCTCAGCGTGTCCTGAGGTTCAACTCACTTCTCGCAATATGAGTTAATTTTTTTGGAAAA-AGA
1 ACCTCAGCGTCT-GTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-GAAAACAG-
* * *
58941159 AAATTTGAAAAACAGAATTTGAAAAT
63 AAA-TTGAAAAACAGAAATGGAAAAC
* * * * *
58941185 ACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTTGCAATATGAGCTGATTTTTTTGAAACACA
1 ACCTCAGCGTCT--GT-GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAA-ACA
*
58941250 GAAATTGAAGAACAGAAATGGAAAAC
62 GAAATTGAAAAACAGAAATGGAAAAC
*
58941276 ACTTCAGCGTCT-TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTTGAAAGACAG
1 ACCTCAGCGTCTGTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA--TTTTTTTGAAA-ACAG
58941340 AAATTGAAAA
63 AAATTGAAAA
58941350 TACCTCAACG
Statistics
Matches: 138, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
87 29 0.21
88 1 0.01
89 24 0.17
90 12 0.09
91 33 0.24
92 37 0.27
93 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (87 bp):
ACCTCAGCGTCTGTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAACAGAAA
TTGAAAAACAGAAATGGAAAAC
Found at i:58941695 original size:73 final size:74
Alignment explanation
Indices: 58941254--58943911 Score: 2026
Period size: 73 Copynumber: 35.3 Consensus size: 74
58941244 AACACAGAAA
* * * * * *
58941254 TTGAAGAACAGAAATGGAAAACACTTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58941317 GCTGATTTTTTT
66 GTTGA---TTTT
*
58941329 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58941394 GTTGA-TTT
66 GTTGATTTT
* * * * * * * *
58941402 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTCAGGTTCAACTCACCTATCGTAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58941465 GTTGATTTT
66 GTTGATTTT
*
58941474 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58941539 GCTGATTTT
66 GTTGATTTT
58941548 TT-AAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
58941612 AGTTGA-TTT
65 AGTTGATTTT
* * * * * *
58941621 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58941684 GTTGATTTTT
66 GTTGA-TTTT
* *
58941694 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAACATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58941759 GCTGATTTT
66 GTTGATTTT
*
58941768 TT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58941832 GTT-A-ATT
66 GTTGATTTT
* * * * * *
58941839 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58941904 GTTGATTTTT
66 GTTGA-TTTT
* *
58941914 TTGAAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58941979 GTTGA-GTT
66 GTTGATTTT
* * * * * * *
58941987 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAAGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58942052 GTTGATTTTTT
66 GTTGA--TTTT
* ** ** * * * ** * *
58942063 TTGGAAAA-AGAAAATTTGAAAA-A-CAGAATTTGAAAATACCTCAGGGTGTGAGTCAAGGCTCA
1 TTGAAAAACAG-AAA-TTGAAAATACCTCAACGTG----T-CTTGAGGCT-CAACTC-A-CCTC-
* * ** * *
58942125 ACCCACCACTCGCAATATGA---G
55 TCGCAATA-T-G-AGT-TGATTTT
* ****** *** * *** *** * * *
58942146 CTGATTTTTTTGAAACACAGAAAT---TGAA-GAATAGAAATG-GAAAACACCTCAGCGTCTTG-
1 TTGA-AAAACAGAAATTGA-AAATACCTCAACG--T-GTCTTGAG-GCTCAACTCA-CCTCTCGC
* * ** * ** *
58942205 AGGT-TCAACTCACCTC
59 A-ATATGAGTTGATTTT
* * ** * * ** * ** ** ** * *
58942221 TCGCAATATGAGCTAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCT
1 TTG-AAAAACAG--AA-----ATTG-AA-A-A-TACCTCAACGTGTCTTGA-G-G-C-TCA-ACT
* * * *
58942286 CAACTCAC-C--TCTCGCAATATGATTTGATTT
49 CACCTCTCGCAATAT-G-AGT-TGA--T--TTT
* * * * * * *
58942316 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58942379 GTTGATTTTT
66 GTTGA-TTTT
* *
58942389 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58942454 GCTGATTTTT
66 GTTGA-TTTT
* *
58942464 TTG-AAGACAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58942528 GTTGA-TTT
66 GTTGATTTT
* * * * * * * *
58942536 TTCACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58942599 GTTGATTTTT
66 GTTGA-TTTT
* * *
58942609 TTGAAAAACAAAAATTGAAAATACCTCAACTTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58942674 GCTGATTTTT
66 GTTGA-TTTT
* *
58942684 ATTGAAAGACGGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 -TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
58942749 AGTTGA-TTT
65 AGTTGATTTT
* * * * * * * *
58942758 TTGACAAACAAAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58942823 GTTGATTTTT
66 GTTGA-TTTT
* *
58942833 TTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58942898 GTTGA-GTT
66 GTTGATTTT
* * * ** * *
58942906 TTGACAAACAAAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58942971 GTTGATTTTTT
66 GTTGA--TTTT
* * * * *
58942982 TTGGAAAA-GGAAAATTTGAAAA-ACAGAATTTGAAAATACCTCAG-CGTGTGA-G-TCAAGGCT
1 TTGAAAAACAG-AAA-TTGAAAATAC-----CT---CA-ACGT--GTC-T-TGAGGCTCAA--CT
* * *
58943042 CAACTCACCACTCGCGATATGAGCTGATTTTT
49 C-----ACCTCTCGCAATATGAGTTGA-TTTT
* * * ** * *
58943074 TTGAAACACAGAAATTGAAGTACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCT
1 TTGAAAAACAGAAATT---G---A-AAAT----ACCTCAAC-GTGTCTTGAGGCTCAACTCACCT
* * *
58943139 ATTGCAATATGAGCTGATTTTT
54 CTCGCAATATGAGTTGA-TTTT
*
58943161 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58943226 GCTGATTTTT
66 GTTGA-TTTT
* * *
58943236 TTG-AAGACAGAAATTAAAAATACATCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58943300 GTTGA-TTT
66 GTTGATTTT
* * * * * * *
58943308 TTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTAAGGTTCAACTCGCCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58943371 GCTGATTTT
66 GTTGATTTT
*
58943380 TTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
58943445 AGTTGA-TTT
65 AGTTGATTTT
* * * * * * *
58943454 TTCACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTATCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58943517 GTTGATTTT
66 GTTGATTTT
*
58943526 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58943591 GCTGATTTT
66 GTTGATTTT
* *
58943600 TT-AAAAGACAGAAAGTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCTCAATATG
1 TTGAAAA-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
58943664 AGTTGA-TTT
65 AGTTGATTTT
* * * * * * *
58943673 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58943738 GTTGAATTTT
66 GTTG-ATTTT
* *
58943748 TTGAAAAACAGAAATTGAAAATACTTCAACGTGTCTTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
58943813 GTTGA-GTT
66 GTTGATTTT
* * * * * *
58943821 TTG----ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTTGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
58943882 GTTGATTTT
66 GTTGATTTT
* * * *
58943891 TTTAGAAACATAAATTAAAAA
1 TTGAAAAACAGAAATTGAAAA
58943912 AAACGAAAAT
Statistics
Matches: 2070, Mismatches: 366, Indels: 295
0.76 0.13 0.11
Matches are distributed among these distances:
69 57 0.03
70 4 0.00
71 184 0.09
72 138 0.07
73 527 0.25
74 366 0.18
75 424 0.20
76 105 0.05
77 56 0.03
78 5 0.00
79 7 0.00
80 12 0.01
81 8 0.00
82 3 0.00
83 12 0.01
84 14 0.01
85 5 0.00
86 8 0.00
87 46 0.02
88 15 0.01
90 5 0.00
91 8 0.00
92 22 0.01
93 21 0.01
94 10 0.00
95 3 0.00
97 1 0.00
98 3 0.00
103 1 0.00
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (74 bp):
TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:58942563 original size:915 final size:916
Alignment explanation
Indices: 58940333--58943979 Score: 6141
Period size: 915 Copynumber: 4.0 Consensus size: 916
58940323 GTTGATTTTT
* * * * *
58940333 TTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGAAGAACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGA
*
58940398 GCTAATTTTTTT-AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCT
64 GCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
58940462 CGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
129 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
*
58940527 ACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGA
194 ACCTATCGCAATATGAGTTGA-TTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGA
*
58940592 GGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACTTCAA
258 GGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAA
*
58940657 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAT
323 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAAT
58940722 TACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAACAGAAA
388 TACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAACAGAAA
* *
58940787 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGA
453 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA
* * *
58940852 AAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCGCCTCTCGCAATATGAGCTA
518 AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT--G--A
** * * *
58940917 GTTTTTTTTTGA-AAGACAGAAATTGAAAATACCTCAGCGTGTCCTGAGACTCAACTCACCTATC
579 GTTGATTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATC
*
58940981 GCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
643 ACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAA
58941046 CTCACCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTG
708 CTCACCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTG
* *
58941111 AGGTTCAACTCACTTCTCGCAATATGAGTT-AATTTTTTTGGAAAAAGAAAATTTGAAAAACAGA
773 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACAGA
*
58941175 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTTGCAATATGAGCTGATTTTT
838 ATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTT
58941240 TTGAAACACAGAAA
903 TTGAAACACAGAAA
*
58941254 TTGAAGAACAGAAATGGAAAACACTTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
*
58941319 TGATTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
66 T-A-ATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCT
*
58941384 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTCAGGTTCAACTC
129 CGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTC
* *
58941449 ACCTATCGTAATATGAGTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAG
194 ACCTATCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAG
58941514 GTTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
259 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
*
58941578 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATT
324 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATT
58941643 ACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA
389 ACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAA
*
58941708 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAACATGAGCTGA-TTTTTT-A
453 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGA
58941771 AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT-
518 AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
58941835 AATTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAAT
583 ATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCACAAT
*
58941900 ATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATATCTCAACGTGTCTTGAGGCTCAACTCAC
648 ATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
*
58941965 CTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAAGCT
713 CTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCT
58942030 CAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACAGAATTTG
778 CAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACAGAATTTG
* *
58942095 AAAATACCTCAGGGTGTGAGTCAAGGCTCAACCCACCACTCGCAATATGAGCTGATTTTTTTGAA
843 AAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAA
58942160 ACACAGAAA
908 ACACAGAAA
*
58942169 TTGAAGAATAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
58942234 TAATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
66 TAA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
*
58942299 GCAATATGATTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
130 GCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCA
*
58942364 CCTATTGCAATATGAGTTGATTTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAG
195 CCTATCGCAATATGAGTTGA-TTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAG
* *
58942429 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT-GAAGACAGAAATTAAAAATACCTCAAC
259 GTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAAC
58942493 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATT
324 GTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATT
* *
58942558 ACCTCAGCGTCTTGAGGTTCAACTCACCTATTGCAATATGAGTTGATTTTTTTGAAAAACAAAAA
389 ACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAA
*
58942623 TTGAAAATACCTCAACTTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTATTG
453 TTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT-TTG
*
58942688 AAAGACGGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
517 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
58942753 GATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCACAA
582 GATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCACAA
*
58942818 TATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
647 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
*
58942883 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGTGTGTCCTGAGGC
712 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
*
58942948 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAGGAAAATTTGAAAAACAGAATTT
777 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACAGAATTT
*
58943013 GAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCGATATGAGCTGATTTTTTTGA
842 GAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGA
58943078 AACACAGAAA
907 AACACAGAAA
* * *
58943088 TTGAAGTACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTATTGCAATATGAGC
1 TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
* * *
58943153 TGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCG
66 TAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
* * * * * * * *
58943218 CAATATGAGCTGATTTTTTTGA-AGACAGAAATTAAAAATACATCAACGTGTCTTGAGGCTCAAC
131 CAATATGAGTTGA--TTTTTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAAC
* * * * *
58943282 TCACCTCTCGCAATATGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTA
192 TCACCTATCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTG
*
58943344 AGGTTCAACTCGCCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCA
257 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCA
58943409 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAA
322 ACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAA
58943474 TTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAACAGAA
387 TTACCTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAACAGAA
*
58943539 ATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTA
452 ATTGAAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTG
* *
58943603 AAAGACAGAAAGTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCTCAATATGAGTT
517 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
58943668 GATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCACAA
582 GATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCACAA
* *
58943733 TATGAGTTGAATTTTTTGAAAAACAGAAATTGAAAATACTTCAACGTGTCTTGAGGCTCAACTCA
647 TATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCA
58943798 CCTCTTGCAATATGAGTTGAGTTTTG----ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
712 CCTCTTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGC
* * * * * * *
58943859 TCAACTCACTTCTTGCAATATGAGTTGA-TTTTTTTAGAAACA-TAAA-TTAAAAAAAACGAAAA
777 TCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACA-G-AAT
** * * ** *
58943921 TTGAAAATACCTCAGCGTGT-CCT-GAGGCTTAACTCACTTCTCGCAATATGAGTTGATTT
840 TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTT
58943980 GAAAAGCAGA
Statistics
Matches: 2596, Mismatches: 110, Indels: 53
0.94 0.04 0.02
Matches are distributed among these distances:
908 38 0.01
909 5 0.00
910 33 0.01
911 61 0.02
914 352 0.14
915 674 0.26
916 14 0.01
917 119 0.05
918 271 0.10
919 525 0.20
920 160 0.06
921 210 0.08
922 134 0.05
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (916 bp):
TTGAAGAACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
TAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCAC
CTATCGCAATATGAGTTGATTTTTTGAAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGT
TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTAAAAGACAGAAATTGAAAATACCTCAACGT
GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTCACAAACAAAAATTGAAATTAC
CTCAGCGTCTTGAGGTTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTG
AAAATACCTCAACGTGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAG
ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCACAATATG
AGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
TTGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
CTCACTTCTCGCAATATGAGTTGATTTTTTTTGGAAAAAGAAAATTTGAAAAACAGAATTTGAAA
ATACCTCAGCGTGTGAGTCAAGGCTCAACTCACCACTCGCAATATGAGCTGATTTTTTTGAAACA
CAGAAA
Found at i:58944113 original size:99 final size:100
Alignment explanation
Indices: 58943909--58944198 Score: 370
Period size: 99 Copynumber: 2.9 Consensus size: 100
58943899 CATAAATTAA
* * *
58943909 AAAAAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTTAACTCACTTCTCGCAATATGAGT
1 AAAAAA-G-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
58943974 TGA-TTTGAAAAGCAGAATTTGTAAGGCAAAAATTGT
64 TGATTTTGAAAAACAGAAATTGAAAAGCAAAAATTGT
*
58944010 AAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGTGTTG
1 AAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
58944075 ATTTTTGAAAAATAGAAATT-AAAAGCAGAAATTG-
66 A-TTTTGAAAAACAGAAATTGAAAAGCAAAAATTGT
* ** * *
58944109 AAAAACAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAA-AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
58944174 GATTTTGAAAAGCATAAATTGAAAA
65 GATTTTGAAAAACAGAAATTGAAAA
58944199 AACGGAAATT
Statistics
Matches: 166, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
99 75 0.45
100 71 0.43
101 20 0.12
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (100 bp):
AAAAAAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTGAAAAACAGAAATTGAAAAGCAAAAATTGT
Found at i:58944117 original size:14 final size:13
Alignment explanation
Indices: 58944082--58944126 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
58944072 TTGATTTTTG
*
58944082 AAAAATAGAAATT
1 AAAAACAGAAATT
*
58944095 AAAAGCAGAAATT
1 AAAAACAGAAATT
58944108 GAAAAACAGAAATT
1 -AAAAACAGAAATT
58944122 AAAAA
1 AAAAA
58944127 TACCTTGGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 16 0.57
14 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:58944147 original size:100 final size:101
Alignment explanation
Indices: 58943910--58944198 Score: 372
Period size: 100 Copynumber: 2.9 Consensus size: 101
58943900 ATAAATTAAA
* * *
58943910 AAAAAC-GAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTTAACTCACTTCTCGCAATATGAGT
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
58943974 TGA-TTTGAAAAGCAGAATTTGTAAGGCAAAAATTGT
65 TGATTTTGAAAAACAGAAATTGAAAAGCAAAAATTGT
*
58944010 AAAAA-AGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGTGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
58944074 GATTTTTGAAAAATAGAAATT-AAAAGCAGAAATTG-
66 GA-TTTTGAAAAACAGAAATTGAAAAGCAAAAATTGT
* ** * *
58944109 AAAAACAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
58944174 GATTTTGAAAAGCATAAATTGAAAA
66 GATTTTGAAAAACAGAAATTGAAAA
58944199 AACGGAAATT
Statistics
Matches: 165, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
99 75 0.45
100 76 0.46
101 14 0.08
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAAACAGAAATTGAAAAGCAAAAATTGT
Found at i:58944267 original size:89 final size:86
Alignment explanation
Indices: 58944095--58944268 Score: 222
Period size: 89 Copynumber: 2.0 Consensus size: 86
58944085 AATAGAAATT
* * * * *
58944095 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTTGGCGTGCCCCGAGGCTCAGCTCACCTC
1 AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTAGGCGTGACCCGAAGCCCAACTCACCTC
*
58944160 TCGCAATATGAGTTGATTTTG
66 TCACAATATGAGTTGATTTTG
* * * * *
58944181 AAAAGCATAAATTGAAAAAACGGAAATTGAAAATACCTCAGCGTGTGACCTGAAGCCCAACTCAC
1 AAAAGCAGAAATTG-AAAAACAGAAATTAAAAATACCT-AG-GCGTGACCCGAAGCCCAACTCAC
58944246 CTCTCACAATATGAGTTGATTTT
63 CTCTCACAATATGAGTTGATTTT
58944269 TTTGAAAGAT
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
86 13 0.18
87 21 0.28
88 1 0.01
89 39 0.53
ACGTcount: A:0.38, C:0.21, G:0.18, T:0.24
Consensus pattern (86 bp):
AAAAGCAGAAATTGAAAAACAGAAATTAAAAATACCTAGGCGTGACCCGAAGCCCAACTCACCTC
TCACAATATGAGTTGATTTTG
Found at i:58945167 original size:17 final size:17
Alignment explanation
Indices: 58945145--58945177 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
58945135 CCCTCTCTCT
*
58945145 TTTTCTTTTTTCTTTTC
1 TTTTCTTTTCTCTTTTC
58945162 TTTTCTTTTCTCTTTT
1 TTTTCTTTTCTCTTTT
58945178 TTTAAGATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTTCTTTTCTCTTTTC
Found at i:58951279 original size:14 final size:14
Alignment explanation
Indices: 58951260--58951289 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
58951250 ATTCTAATTC
*
58951260 AATTTCATTAGAAG
1 AATTTCACTAGAAG
58951274 AATTTCACTAGAAG
1 AATTTCACTAGAAG
58951288 AA
1 AA
58951290 AAATTTCTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (14 bp):
AATTTCACTAGAAG
Found at i:58955001 original size:15 final size:15
Alignment explanation
Indices: 58954964--58955011 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
58954954 AGTAATGTTA
58954964 AGATATATATAATATAT
1 AGATATATATAA-A-AT
* *
58954981 ACATATGTATAAAAT
1 AGATATATATAAAAT
*
58954996 AGATATAAATAAAAT
1 AGATATATATAAAAT
58955011 A
1 A
58955012 TGTACATAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 15 0.58
16 1 0.04
17 10 0.38
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.33
Consensus pattern (15 bp):
AGATATATATAAAAT
Found at i:58955056 original size:47 final size:45
Alignment explanation
Indices: 58954993--58955123 Score: 129
Period size: 47 Copynumber: 2.7 Consensus size: 45
58954983 ATATGTATAA
* * *
58954993 AATAGATATAAATAAAATATGTACATAATATAGTGTA-AAAAATACAT
1 AATA-ATATAATTAAAATATATACATAAAATAGTGTAGAAAAA-A-AT
* *
58955040 ACATAATATAATTAAAATATATACATAAGATAACATGTAGAAAAAAAT
1 A-ATAATATAATTAAAATATATACATAAAAT-A-GTGTAGAAAAAAAT
58955088 AATAATATAGTATTAAAGATATATACATAAAATAGT
1 AATAATATA--ATTAAA-ATATATACATAAAATAGT
58955124 ATAATATATA
Statistics
Matches: 71, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
47 32 0.45
48 8 0.11
49 12 0.17
50 19 0.27
ACGTcount: A:0.58, C:0.05, G:0.08, T:0.30
Consensus pattern (45 bp):
AATAATATAATTAAAATATATACATAAAATAGTGTAGAAAAAAAT
Found at i:58955114 original size:72 final size:73
Alignment explanation
Indices: 58955017--58955154 Score: 170
Period size: 72 Copynumber: 1.9 Consensus size: 73
58955007 AAATATGTAC
* * *
58955017 ATAATATAGTGTAAAAAATACATACATAATATAAT-TAAAATATATACATAAGATAACATGTAGA
1 ATAATATAGTATAAAAAATACATACATAAAATAATATAAAATATATACATAAGATAAAATGTAGA
58955081 AAAAAATA
66 AAAAAATA
* * * * * * * *
58955089 ATAATATAGTATTAAAGATATATACATAAAATAGTATAATATATATACGTAATATAAAATTTAGA
1 ATAATATAGTATAAAAAATACATACATAAAATAATATAAAATATATACATAAGATAAAATGTAGA
58955154 A
66 A
58955155 TATACCTAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
72 29 0.54
73 25 0.46
ACGTcount: A:0.57, C:0.04, G:0.07, T:0.31
Consensus pattern (73 bp):
ATAATATAGTATAAAAAATACATACATAAAATAATATAAAATATATACATAAGATAAAATGTAGA
AAAAAATA
Found at i:58955123 original size:25 final size:24
Alignment explanation
Indices: 58955005--58955210 Score: 108
Period size: 25 Copynumber: 8.8 Consensus size: 24
58954995 TAGATATAAA
* *
58955005 TAAAATATGTACATAATATAGTGT
1 TAAAATATATACATAATATAGTAT
* *
58955029 AAAAAATACATACATAATATA--AT
1 -TAAAATATATACATAATATAGTAT
* **
58955052 TAAAATATATACATAAGATAACAT
1 TAAAATATATACATAATATAGTAT
* *
58955076 GTAGAAAAAAATA-ATAATATAGTAT
1 -TA-AAATATATACATAATATAGTAT
*
58955101 TAAAGATATATACATAAAATAGTA-
1 TAAA-ATATATACATAATATAGTAT
* * **
58955125 TAATATATATACGTAATATAAAAT
1 TAAAATATATACATAATATAGTAT
* * *
58955149 TTAGA-ATATACCT-A-ATA-TAT
1 TAAAATATATACATAATATAGTAT
* * *
58955169 TAAAAGAATATATATAATATAATAT
1 TAAAA-TATATACATAATATAGTAT
58955194 TAAGAA-ATATA-ATAATA
1 TAA-AATATATACATAATA
58955211 ACAAAAAAAA
Statistics
Matches: 140, Mismatches: 28, Indels: 28
0.71 0.14 0.14
Matches are distributed among these distances:
20 5 0.04
21 3 0.02
22 24 0.17
23 32 0.23
24 23 0.16
25 44 0.31
26 9 0.06
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
TAAAATATATACATAATATAGTAT
Found at i:58955208 original size:23 final size:24
Alignment explanation
Indices: 58955038--58955210 Score: 94
Period size: 23 Copynumber: 7.4 Consensus size: 24
58955028 TAAAAAATAC
58955038 ATACATAATAT-A-ATTAA-AATAT
1 ATACATAATATAATATTAAGAA-AT
* * * *
58955060 ATACATAAGATAACATGTAGAAAAAA
1 ATACATAATATAATAT-TA-AGAAAT
* *
58955086 ATA-ATAATATAGTATTAAAGATAT
1 ATACATAATATAATATT-AAGAAAT
* * * *
58955110 ATACATAAAATAGTA-TAATATAT
1 ATACATAATATAATATTAAGAAAT
* * *
58955133 ATACGTAATATAAAATTTAG-AAT
1 ATACATAATATAATATTAAGAAAT
* * *
58955156 ATACCTAATATATTA-AAAG-AAT
1 ATACATAATATAATATTAAGAAAT
*
58955178 ATATATAATATAATATTAAGAAAT
1 ATACATAATATAATATTAAGAAAT
58955202 ATA-ATAATA
1 ATACATAATA
58955211 ACAAAAAAAA
Statistics
Matches: 115, Mismatches: 26, Indels: 19
0.72 0.16 0.12
Matches are distributed among these distances:
22 27 0.23
23 41 0.36
24 18 0.16
25 22 0.19
26 5 0.04
27 2 0.02
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (24 bp):
ATACATAATATAATATTAAGAAAT
Found at i:58955529 original size:16 final size:16
Alignment explanation
Indices: 58955491--58955529 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
58955481 CTCCAAAAAA
*
58955491 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
58955507 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
58955523 AATAACT
1 AAAAACT
58955530 TTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:58955703 original size:18 final size:18
Alignment explanation
Indices: 58955680--58955733 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
58955670 ATAAGTGGTG
58955680 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
*
58955698 GTGGAG-TAG-GT-G---
1 GTGGAGCAAGTGTGGCTA
58955710 GTGGAGCAAGTGTGGCTA
1 GTGGAGCAAGTGTGGCTA
58955728 GTGGAG
1 GTGGAG
58955734 TTGGTGGTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 6 0.21
13 2 0.07
14 2 0.07
15 2 0.07
16 2 0.07
17 2 0.07
18 12 0.43
ACGTcount: A:0.20, C:0.07, G:0.50, T:0.22
Consensus pattern (18 bp):
GTGGAGCAAGTGTGGCTA
Found at i:58955712 original size:30 final size:30
Alignment explanation
Indices: 58955676--58955743 Score: 127
Period size: 30 Copynumber: 2.3 Consensus size: 30
58955666 AGGTATAAGT
58955676 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
58955706 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
58955736 GGTGGTGG
1 GGTGGTGG
58955744 CAAAGGCTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.16, C:0.06, G:0.53, T:0.25
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:58958871 original size:2 final size:2
Alignment explanation
Indices: 58958864--58958899 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
58958854 ACATACATGC
* *
58958864 AT AT AT AT AT AT AT GT AT AT AT AT GT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58958900 GAGCTTACAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (2 bp):
AT
Found at i:58960649 original size:130 final size:131
Alignment explanation
Indices: 58960452--58960745 Score: 420
Period size: 130 Copynumber: 2.3 Consensus size: 131
58960442 GAATTTCTAG
* ** * * * *
58960452 ACATTGAACATTGCCTT-GTTTT--AGAATTTAGAAA-ATATGAGTGAAGTTTTAAAGGGATATT
1 ACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAGACATGAGTGAAATTTCAAAGGAATATT
** *
58960513 CGATTATTTTGAACAAACGGGAAATTGCAATCC-AGCACGATAGGGCACGATTCCCCGAATTGCC
66 CGATTATTTTGAACAAACGAAAAATTG-AAACCTAGCACGATAGGGCACGATTCCCCGAATTGCC
58960577 AA
130 AA
58960579 ACATCGAACATT-CCTTCGTTTTAAAGAATTTTTAAAGACATGAGTGAAATTTCAAAGGAATATT
1 ACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAGACATGAGTGAAATTTCAAAGGAATATT
*
58960643 CGATTATTTTGAACAAACGAAAAATTGAAACCTAGCACGATTGGGCACGATTCCCCGAATTGCCA
66 CGATTATTTTGAACAAACGAAAAATTGAAACCTAGCACGATAGGGCACGATTCCCCGAATTGCCA
58960708 A
131 A
* *
58960709 ACATCGAACATTGCCTTTGTTTTAAATAATTTTTAAA
1 ACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAA
58960746 TGAATAATTA
Statistics
Matches: 148, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
126 4 0.03
127 16 0.11
129 14 0.09
130 92 0.62
131 22 0.15
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (131 bp):
ACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAGACATGAGTGAAATTTCAAAGGAATATT
CGATTATTTTGAACAAACGAAAAATTGAAACCTAGCACGATAGGGCACGATTCCCCGAATTGCCA
A
Found at i:58961858 original size:14 final size:14
Alignment explanation
Indices: 58961839--58961865 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
58961829 AATGTAAAAT
58961839 AAAATAATGATTTC
1 AAAATAATGATTTC
58961853 AAAATAATGATTT
1 AAAATAATGATTT
58961866 ATTTAAACAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (14 bp):
AAAATAATGATTTC
Found at i:58972698 original size:3 final size:3
Alignment explanation
Indices: 58972692--58972825 Score: 51
Period size: 3 Copynumber: 43.0 Consensus size: 3
58972682 ATAATGTGAC
* * * *
58972692 AAT AAT AAT AAC AAT AGT AAT AAAT AAAT AAAT AAAT AAT GAT AAT AAA
1 AAT AAT AAT AAT AAT AAT AAT -AAT -AAT -AAT -AAT AAT AAT AAT AAT
* * * * * *
58972741 AAT AAT AGT AA- AGAA AAT AA- AGAT AGA- ATT AAT AAT GAT ACT AACG
1 AAT AAT AAT AAT A-AT AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T
* *
58972787 AAT -AT AAGT AAT AAT AGT AAA AAT AAT AAT AAT AAT AAT
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
58972826 GCTAAATTAA
Statistics
Matches: 99, Mismatches: 23, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
2 4 0.04
3 71 0.72
4 24 0.24
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.27
Consensus pattern (3 bp):
AAT
Found at i:58972899 original size:15 final size:15
Alignment explanation
Indices: 58972879--58972908 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
58972869 TAAAATATAA
58972879 TCATAACAAAAATAG
1 TCATAACAAAAATAG
*
58972894 TCATAACAATAATAG
1 TCATAACAAAAATAG
58972909 AAATAATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.13, G:0.07, T:0.23
Consensus pattern (15 bp):
TCATAACAAAAATAG
Found at i:58986442 original size:20 final size:21
Alignment explanation
Indices: 58986409--58986447 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
58986399 ATAAAAGTAC
58986409 AATAGGTATCGATACTTTTTG
1 AATAGGTATCGATACTTTTTG
*
58986430 AATA-GTATTGATACTTTT
1 AATAGGTATCGATACTTTT
58986448 GCTTTTGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (21 bp):
AATAGGTATCGATACTTTTTG
Found at i:59006963 original size:18 final size:16
Alignment explanation
Indices: 59006931--59006969 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
59006921 TACATGATCA
*
59006931 AAACAAAAAGAATAAG
1 AAACAAAAAGAATAAC
59006947 AAACAAAGAATGAATAAC
1 AAACAAA-AA-GAATAAC
59006965 AAACA
1 AAACA
59006970 GTTACATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 2 0.10
18 11 0.55
ACGTcount: A:0.72, C:0.10, G:0.10, T:0.08
Consensus pattern (16 bp):
AAACAAAAAGAATAAC
Found at i:59007138 original size:15 final size:15
Alignment explanation
Indices: 59007103--59007154 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
59007093 TTAAGAATTT
*
59007103 TATTAAATTAT-ATA
1 TATTTAATTATAATA
59007117 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
59007131 TATTTAATAATAAT-
1 TATTTAATTATAATA
59007145 TATGTTAATT
1 TAT-TTAATT
59007155 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:59007177 original size:120 final size:120
Alignment explanation
Indices: 59007041--59007270 Score: 460
Period size: 120 Copynumber: 1.9 Consensus size: 120
59007031 TTTGAGTAAA
59007041 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
59007106 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
59007161 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
1 TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
59007226 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
66 TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTT
59007271 TAAATATGAT
Statistics
Matches: 110, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.50
Consensus pattern (120 bp):
TTATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
TAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATT
Found at i:59007236 original size:61 final size:61
Alignment explanation
Indices: 59007051--59007238 Score: 208
Period size: 61 Copynumber: 3.1 Consensus size: 61
59007041 TTATAGTATC
59007051 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * * * * * * * * *
59007112 ATATATTTTAATTAT-AATATATTTA-ATAATAAT-TATG-TTAATTTA-TATTTTA-TAGTATC
1 ATATATTATGATT-TGAGTAAATTCATATAAGAATAT-TGATT-ATTAAGAATTTTATTA-AATT
59007171 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
59007232 ATATATT
1 ATATATT
59007239 TTAATTATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 29 0.30
60 26 0.27
61 36 0.37
62 3 0.03
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:59007253 original size:16 final size:16
Alignment explanation
Indices: 59007232--59007273 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
59007222 TTATTAAATT
*
59007232 ATATATTTTAATTATA
1 ATATATTTTAATAATA
59007248 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
59007263 AT-TATGTTTAA
1 ATATAT-TTTAA
59007274 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:59007258 original size:15 final size:15
Alignment explanation
Indices: 59007223--59007264 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
59007213 TTAAGAATTT
*
59007223 TATTAAATTAT-ATA
1 TATTTAATTATAATA
59007237 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
59007251 TATTTAATAATAAT
1 TATTTAATTATAAT
59007265 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:59007499 original size:45 final size:43
Alignment explanation
Indices: 59007399--59007508 Score: 120
Period size: 45 Copynumber: 2.6 Consensus size: 43
59007389 TTTTCCATTA
59007399 TGCTATTACACCTCTATT-C---CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
* * ***
59007438 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCA-TACATTCAACCAAACACAAGA-T
59007483 TGCTATTACACCTCTATTCCAATACA
1 TGCTATTACACCTCTATTCC-ATACA
59007509 CCTCTAATCC
Statistics
Matches: 57, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 23 0.40
46 1 0.02
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.33
Consensus pattern (43 bp):
TGCTATTACACCTCTATTCCATACATTCAACCAAACACAAGAT
Found at i:59007510 original size:16 final size:16
Alignment explanation
Indices: 59007489--59007556 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
59007479 GATTTGCTAT
*
59007489 TACACCTCTATTCCAA
1 TACACCTCTAATCCAA
*
59007505 TACACCTCTAATCCAT
1 TACACCTCTAATCCAA
59007521 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
59007537 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
59007553 TACA
1 TACA
59007557 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:59008148 original size:12 final size:12
Alignment explanation
Indices: 59008131--59008157 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
59008121 TTGTCTCTTA
59008131 AGTTTATTCATT
1 AGTTTATTCATT
59008143 AGTTTATTCATT
1 AGTTTATTCATT
59008155 AGT
1 AGT
59008158 ATTTAGTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.07, G:0.11, T:0.56
Consensus pattern (12 bp):
AGTTTATTCATT
Found at i:59008596 original size:13 final size:13
Alignment explanation
Indices: 59008549--59008597 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
59008539 TTTGGCAATA
59008549 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
59008562 TTTTTAAAAAGTG
1 CTTTTGAAAAGTG
*
59008575 -TTATGGAAAAGTG
1 CTT-TTGAAAAGTG
59008588 CTTTTGAAAA
1 CTTTTGAAAA
59008598 TTTTAGGTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
12 2 0.07
13 25 0.86
14 2 0.07
ACGTcount: A:0.37, C:0.04, G:0.20, T:0.39
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:59010212 original size:24 final size:23
Alignment explanation
Indices: 59010174--59010228 Score: 67
Period size: 24 Copynumber: 2.4 Consensus size: 23
59010164 AATACATGTT
*
59010174 CATAATAT-ATATAAAACGTATA
1 CATAATATAATATAAAACATATA
* *
59010196 TATAATATAATATTAAAACATTTA
1 CATAATATAATA-TAAAACATATA
59010220 CATAATATA
1 CATAATATA
59010229 TACACATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 7 0.26
23 3 0.11
24 17 0.63
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (23 bp):
CATAATATAATATAAAACATATA
Found at i:59010305 original size:21 final size:18
Alignment explanation
Indices: 59010261--59010305 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
59010251 AAAAACATAT
59010261 TAATATTAATAATAATAC
1 TAATATTAATAATAATAC
59010279 TAATATTACATAAATATATAC
1 TAATATTA-AT-AATA-ATAC
*
59010300 TTATAT
1 TAATAT
59010306 ATATATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 8 0.35
19 2 0.09
20 4 0.17
21 9 0.39
ACGTcount: A:0.51, C:0.07, G:0.00, T:0.42
Consensus pattern (18 bp):
TAATATTAATAATAATAC
Found at i:59010821 original size:3 final size:3
Alignment explanation
Indices: 59010813--59010883 Score: 92
Period size: 3 Copynumber: 24.0 Consensus size: 3
59010803 GAGTACATAC
* *
59010813 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA GAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
59010861 TAA T-A TCAA TAA T-A TAA AAA TAA
1 TAA TAA T-AA TAA TAA TAA TAA TAA
59010884 CAAGGATATT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
2 4 0.07
3 53 0.90
4 2 0.03
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:59013020 original size:14 final size:14
Alignment explanation
Indices: 59012997--59013027 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
59012987 AGTTGATTTA
*
59012997 AAAAATATAAATTG
1 AAAAACATAAATTG
59013011 AAAAACATAAATTG
1 AAAAACATAAATTG
59013025 AAA
1 AAA
59013028 TTACCTCAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.06, T:0.23
Consensus pattern (14 bp):
AAAAACATAAATTG
Found at i:59013185 original size:14 final size:14
Alignment explanation
Indices: 59013166--59013192 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
59013156 TTGATTTTTG
59013166 AAAAGCAGAAATTA
1 AAAAGCAGAAATTA
59013180 AAAAGCAGAAATT
1 AAAAGCAGAAATT
59013193 GAAATTACCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
AAAAGCAGAAATTA
Found at i:59013195 original size:82 final size:82
Alignment explanation
Indices: 59013046--59013196 Score: 189
Period size: 82 Copynumber: 1.8 Consensus size: 82
59013036 GCGTGCCCCG
* ** * * * **
59013046 AGGCTCAACTCACCTCTCACAATATGAGTTGGTCTTTTTGAAACTTAATTTGAAAAGTAGATTTT
1 AGGCTCAACTCACCTCTCACAATATGAGTTGGTATTTTTGAAACAGAAATTAAAAAGCAGAAATT
59013111 GAAAAACAGAAATTAAA
66 GAAAAACAGAAATTAAA
*
59013128 AGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAGCAGAAATTAAAAAGCAGAAA
1 AGGCTCAACTCACCTCTCACAATATGAGTTGGTATTTTTG-AAA-CAGAAATTAAAAAGCAGAAA
59013191 TTGAAA
64 TTGAAA
59013197 TTACCTCAGC
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
80 6 0.10
81 4 0.07
82 48 0.83
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.28
Consensus pattern (82 bp):
AGGCTCAACTCACCTCTCACAATATGAGTTGGTATTTTTGAAACAGAAATTAAAAAGCAGAAATT
GAAAAACAGAAATTAAA
Found at i:59013238 original size:87 final size:88
Alignment explanation
Indices: 59012857--59013257 Score: 387
Period size: 87 Copynumber: 4.6 Consensus size: 88
59012847 AAAAGTAGAT
* * * * *
59012857 CTCAGCGTGCCCCGAGGCTTAACTTACCTCTCGTAATATGAGTTGATTTTTGAAAAATATAGATT
1 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATT
* *
59012922 GGAAAAAAACAGAAATTGAAAATAC
66 -G-AAAAAGCAGAAATTGAAATTAC
* * * * *
59012947 CTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTAAAAAATATAAATT
1 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATT
*
59013010 GAAAAA-CATAAATTGAAATTAC
66 GAAAAAGCAGAAATTGAAATTAC
* * * *
59013032 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTTGGTCTTTTTG--AAACTTAAT
1 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-G-ATTTTTGAAAAACATAAA
* **
59013095 TTG-AAAAGTAGATTTTGAAA--A-
64 TTGAAAAAGCAGAAATTGAAATTAC
* ** **** * *
59013116 -ACAGAAAT--TAAAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCAGAAAT
1 CTCAG-CGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAAT
59013178 T-AAAAAGCAGAAATTGAAATTAC
65 TGAAAAAGCAGAAATTGAAATTAC
* *
59013201 CTCAGCGTGCCCTGAGGCTCAACTTACCTCTCGCAATATGAGTTGATTTTTGAAAAA
1 CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA
59013258 AAAAATGGAA
Statistics
Matches: 248, Mismatches: 48, Indels: 33
0.75 0.15 0.10
Matches are distributed among these distances:
80 6 0.02
81 1 0.00
82 50 0.20
83 3 0.01
84 2 0.01
85 56 0.23
86 13 0.05
87 59 0.24
88 15 0.06
89 3 0.01
90 40 0.16
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.28
Consensus pattern (88 bp):
CTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACATAAATT
GAAAAAGCAGAAATTGAAATTAC
Found at i:59027095 original size:24 final size:25
Alignment explanation
Indices: 59027068--59027119 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
59027058 GCCTAGCCTC
*
59027068 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
**
59027092 TTTTGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
59027117 TTT
1 TTT
59027120 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:59027189 original size:11 final size:11
Alignment explanation
Indices: 59027175--59027227 Score: 65
Period size: 11 Copynumber: 5.0 Consensus size: 11
59027165 GTATATCATA
59027175 GCATATCATGT
1 GCATATCATGT
* *
59027186 GCATCTCAT-A
1 GCATATCATGT
*
59027196 ACATATCATGT
1 GCATATCATGT
59027207 GCATATCATGT
1 GCATATCATGT
59027218 -CATATCATGT
1 GCATATCATGT
59027228 ATAACAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
10 17 0.49
11 18 0.51
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (11 bp):
GCATATCATGT
Found at i:59027194 original size:21 final size:21
Alignment explanation
Indices: 59027167--59027227 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
59027157 TATAATGAGT
59027167 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
59027188 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
59027209 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
59027228 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:59027226 original size:10 final size:10
Alignment explanation
Indices: 59027167--59027227 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
59027157 TATAATGAGT
59027167 ATATCATAG-C
1 ATATCAT-GTC
59027177 ATATCATGTGC
1 ATATCATGT-C
* **
59027188 ATCTCATAAC
1 ATATCATGTC
59027198 ATATCATGTGC
1 ATATCATGT-C
59027209 ATATCATGTC
1 ATATCATGTC
59027219 ATATCATGT
1 ATATCATGT
59027228 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:59034976 original size:21 final size:21
Alignment explanation
Indices: 59034949--59035009 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
59034939 TATAATGAGT
59034949 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
59034970 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
59034991 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
59035010 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:59035008 original size:10 final size:10
Alignment explanation
Indices: 59034949--59035009 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
59034939 TATAATGAGT
59034949 ATATCATAG-C
1 ATATCAT-GTC
59034959 ATATCATGTGC
1 ATATCATGT-C
* **
59034970 ATCTCATAAC
1 ATATCATGTC
59034980 ATATCATGTGC
1 ATATCATGT-C
59034991 ATATCATGTC
1 ATATCATGTC
59035001 ATATCATGT
1 ATATCATGT
59035010 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:59035090 original size:25 final size:26
Alignment explanation
Indices: 59035046--59035095 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
59035036 ATAATTAAAC
* *
59035046 CCTAGGGGGTATAATGGTCATTTTTA
1 CCTAGGGGGTAAAATAGTCATTTTTA
59035072 CCTA-GGGGTAAAATAGTCATTTTT
1 CCTAGGGGGTAAAATAGTCATTTTT
59035096 CATATTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (26 bp):
CCTAGGGGGTAAAATAGTCATTTTTA
Found at i:59035315 original size:33 final size:33
Alignment explanation
Indices: 59035278--59035376 Score: 155
Period size: 33 Copynumber: 3.0 Consensus size: 33
59035268 AAGCCCACTG
59035278 AACCCAAATTTTACAACAGTACTAACCGTGTTA
1 AACCCAAATTTTACAACAGTACTAACCGTGTTA
*
59035311 AACCCAAATTTTACAATAGTACTAACCGTGTT-
1 AACCCAAATTTTACAACAGTACTAACCGTGTTA
***
59035343 AACATGAATTTTACAACAGTACTAACCGTGTTA
1 AACCCAAATTTTACAACAGTACTAACCGTGTTA
59035376 A
1 A
59035377 CATGCAACTT
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
32 28 0.47
33 32 0.53
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.29
Consensus pattern (33 bp):
AACCCAAATTTTACAACAGTACTAACCGTGTTA
Found at i:59035358 original size:32 final size:32
Alignment explanation
Indices: 59035284--59035380 Score: 149
Period size: 32 Copynumber: 3.0 Consensus size: 32
59035274 ACTGAACCCA
***
59035284 AATTTTACAACAGTACTAACCGTGTTAAACCCA
1 AATTTTACAACAGTACTAACCGTGTT-AACATG
*
59035317 AATTTTACAATAGTACTAACCGTGTTAACATG
1 AATTTTACAACAGTACTAACCGTGTTAACATG
59035349 AATTTTACAACAGTACTAACCGTGTTAACATG
1 AATTTTACAACAGTACTAACCGTGTTAACATG
59035381 CAACTTTTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
32 34 0.58
33 25 0.42
ACGTcount: A:0.38, C:0.20, G:0.11, T:0.31
Consensus pattern (32 bp):
AATTTTACAACAGTACTAACCGTGTTAACATG
Found at i:59040248 original size:22 final size:21
Alignment explanation
Indices: 59040199--59040252 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
59040189 AATAAAGATA
59040199 GAAT-TAATAATGATACTAAC
1 GAATATAATAATGATACTAAC
*
59040219 GAATATAAGTAATGATAGTAA-
1 GAATATAA-TAATGATACTAAC
*
59040240 TAATAATAATAAT
1 GAAT-ATAATAAT
59040253 AATAATGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
20 4 0.14
21 10 0.34
22 15 0.52
ACGTcount: A:0.54, C:0.04, G:0.11, T:0.31
Consensus pattern (21 bp):
GAATATAATAATGATACTAAC
Found at i:59040336 original size:24 final size:24
Alignment explanation
Indices: 59040309--59040368 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
59040299 AAAATAAAAT
*
59040309 ATAATCATAATAAAAATAATAGTC
1 ATAATCATAATAAAAATAATAGTA
* *
59040333 ATAATAATAATAGAAATAATAGTA
1 ATAATCATAATAAAAATAATAGTA
*
59040357 ATAA-CACAATAA
1 ATAATCATAATAA
59040369 TAATGGTATT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 5 0.17
24 25 0.83
ACGTcount: A:0.62, C:0.07, G:0.05, T:0.27
Consensus pattern (24 bp):
ATAATCATAATAAAAATAATAGTA
Found at i:59040372 original size:3 final size:3
Alignment explanation
Indices: 59040223--59040360 Score: 65
Period size: 3 Copynumber: 46.3 Consensus size: 3
59040213 ACTAACGAAT
* * * * *
59040223 ATA AGTA ATG ATA GTA ATA ATA ATA ATA ATA ATA ATG CTA A-A TTA
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* *
59040268 ATTA ATA ATA A-A ATA ATA AGCA GATA A-A CTCA A-A ATA A-A AT- ATA
1 A-TA ATA ATA ATA ATA ATA A-TA -ATA ATA AT-A ATA ATA ATA ATA ATA
* * * * *
59040312 ATC ATA ATA AAA ATA ATA GTC ATA ATA ATA ATA GA-A ATA ATA GTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
59040357 ATA A
1 ATA A
59040361 CACAATAATA
Statistics
Matches: 98, Mismatches: 24, Indels: 26
0.66 0.16 0.18
Matches are distributed among these distances:
2 11 0.11
3 76 0.78
4 10 0.10
5 1 0.01
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:59044149 original size:56 final size:59
Alignment explanation
Indices: 59044087--59044201 Score: 148
Period size: 60 Copynumber: 2.0 Consensus size: 59
59044077 TAATATTAAA
59044087 TTTAATTTAAAACTTATCTTAATAG-T-AAT-TTA-TTAATTTAATATTAAAGTCATTAT
1 TTTAATTTAAAACTTATCTT-ATAGATAAATATTAGTTAATTTAATATTAAAGTCATTAT
* * * *
59044143 TTTAATTTTAAATTTATCTTGTAGATAAATATTATGTTAATTTAATATTAAAGTGATTA
1 TTTAATTTAAAACTTATCTTATAGATAAATATTA-GTTAATTTAATATTAAAGTCATTA
59044202 AATTTAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
55 3 0.06
56 19 0.38
57 3 0.06
58 3 0.06
60 22 0.44
ACGTcount: A:0.40, C:0.03, G:0.06, T:0.50
Consensus pattern (59 bp):
TTTAATTTAAAACTTATCTTATAGATAAATATTAGTTAATTTAATATTAAAGTCATTAT
Found at i:59046405 original size:51 final size:51
Alignment explanation
Indices: 59046329--59046442 Score: 183
Period size: 51 Copynumber: 2.2 Consensus size: 51
59046319 AGCAACAAGC
* *
59046329 GACAAGCGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGT
* *
59046380 GACAAGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGT
*
59046431 AACAAGTGATAA
1 GACAAGTGATAA
59046443 ATGTGATCAG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (51 bp):
GACAAGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGT
Found at i:59049262 original size:20 final size:20
Alignment explanation
Indices: 59049237--59049277 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
59049227 TGAGATTATT
59049237 CATAACATCATTTAAATGGA
1 CATAACATCATTTAAATGGA
*
59049257 CATAACGTCATTTAAATGGA
1 CATAACATCATTTAAATGGA
59049277 C
1 C
59049278 CCTCGAGGCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (20 bp):
CATAACATCATTTAAATGGA
Found at i:59051032 original size:18 final size:18
Alignment explanation
Indices: 59050986--59051021 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
59050976 ACGGGAAATC
*
59050986 ACATGTATCCATTGATTT
1 ACATATATCCATTGATTT
59051004 ACATATATCCATTGATTT
1 ACATATATCCATTGATTT
59051022 TCATTATTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.17, G:0.08, T:0.44
Consensus pattern (18 bp):
ACATATATCCATTGATTT
Found at i:59057722 original size:17 final size:17
Alignment explanation
Indices: 59057700--59057732 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
59057690 TTTTTATCAT
*
59057700 TTATCATTTATCGGGCA
1 TTATCATTAATCGGGCA
59057717 TTATCATTAATCGGGC
1 TTATCATTAATCGGGC
59057733 TTTGTCAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.39
Consensus pattern (17 bp):
TTATCATTAATCGGGCA
Found at i:59061734 original size:21 final size:21
Alignment explanation
Indices: 59061691--59061741 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 21
59061681 TTATCTACAT
59061691 TTAAACACATTAAATTGAACTTA
1 TTAAACACATTAAA-T-AACTTA
59061714 TTAAACACATTTAAA-AACTTA
1 TTAAACACA-TTAAATAACTTA
*
59061735 TTGAACA
1 TTAAACA
59061742 TGCACTCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 12 0.46
23 9 0.35
24 5 0.19
ACGTcount: A:0.49, C:0.14, G:0.04, T:0.33
Consensus pattern (21 bp):
TTAAACACATTAAATAACTTA
Found at i:59065722 original size:68 final size:66
Alignment explanation
Indices: 59065650--59065826 Score: 173
Period size: 67 Copynumber: 2.7 Consensus size: 66
59065640 CATCATGTGT
* * * *
59065650 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCACATGCGTGGAT-CTAGTGAAGGACACC
59065712 ATGTAG
61 ATGTAG
** *
59065718 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCACATGCGTGGCTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGGATCTA-GTGAAGGACACCATGT
59065783 AG
65 AG
* * * *
59065785 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTGG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGG
59065827 TACTGAGTGT
Statistics
Matches: 94, Mismatches: 11, Indels: 10
0.82 0.10 0.09
Matches are distributed among these distances:
64 22 0.23
65 5 0.05
66 22 0.23
67 32 0.34
68 13 0.14
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCACATGCGTGGATCTAGTGAAGGACACCATGTA
G
Found at i:59071940 original size:20 final size:20
Alignment explanation
Indices: 59071915--59071953 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
59071905 AATATAAGTG
*
59071915 ATAATGATGATAATAATAAT
1 ATAATGATGACAATAATAAT
59071935 ATAATGATGACAATAATAA
1 ATAATGATGACAATAATAA
59071954 GGAACAGCAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.10, T:0.31
Consensus pattern (20 bp):
ATAATGATGACAATAATAAT
Found at i:59081901 original size:40 final size:40
Alignment explanation
Indices: 59081857--59081932 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
59081847 TCCTACAATC
* * *
59081857 TTTGAAAATAACTTATTATAAACTTAATAACTATACATTA
1 TTTGAAAATAAATCATTATAAACTCAATAACTATACATTA
*
59081897 TTTGAAAATAAATCATTATGAACTCAATAACTATAC
1 TTTGAAAATAAATCATTATAAACTCAATAACTATAC
59081933 CGTAGAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.47, C:0.12, G:0.04, T:0.37
Consensus pattern (40 bp):
TTTGAAAATAAATCATTATAAACTCAATAACTATACATTA
Found at i:59084443 original size:15 final size:17
Alignment explanation
Indices: 59084413--59084446 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
59084403 CGAAATTAAA
59084413 TTATAATTTTTAATAAT
1 TTATAATTTTTAATAAT
59084430 TTAT-ATTTTT-ATAAT
1 TTATAATTTTTAATAAT
59084445 TT
1 TT
59084447 TTAAAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 6 0.35
17 4 0.24
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATAATTTTTAATAAT
Found at i:59084528 original size:29 final size:29
Alignment explanation
Indices: 59084444--59084517 Score: 139
Period size: 29 Copynumber: 2.6 Consensus size: 29
59084434 ATTTTTATAA
59084444 TTTTTAAAAAATTAAATCAAAATTTTATT
1 TTTTTAAAAAATTAAATCAAAATTTTATT
59084473 TTTTTAAAAAATTAAATCAAAATTTTATT
1 TTTTTAAAAAATTAAATCAAAATTTTATT
*
59084502 TTTTTTAAAAATTAAA
1 TTTTTAAAAAATTAAA
59084518 ATATAATTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (29 bp):
TTTTTAAAAAATTAAATCAAAATTTTATT
Found at i:59084958 original size:13 final size:13
Alignment explanation
Indices: 59084942--59084966 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
59084932 TTATTTTTTT
59084942 AATAAATTTAATG
1 AATAAATTTAATG
59084955 AATAAATTTAAT
1 AATAAATTTAAT
59084967 ATTTTAATCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AATAAATTTAATG
Found at i:59086809 original size:21 final size:21
Alignment explanation
Indices: 59086785--59086832 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
59086775 TTATATTCAA
*
59086785 AAAAATAAAAA-TTAAATTCTT
1 AAAAATAAAAATTTAAA-TATT
59086806 AAAAATAAAAATTTAAATATT
1 AAAAATAAAAATTTAAATATT
59086827 AAAAAT
1 AAAAAT
59086833 TAAATATATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 20 0.80
22 5 0.20
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAATAAAAATTTAAATATT
Found at i:59086809 original size:22 final size:22
Alignment explanation
Indices: 59086784--59086836 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 22
59086774 TTTATATTCA
59086784 AAAAAATAAAAA-TTAAAT-TCT
1 AAAAAATAAAAATTTAAATAT-T
*
59086805 TAAAAATAAAAATTTAAATATT
1 AAAAAATAAAAATTTAAATATT
*
59086827 AAAAATTAAA
1 AAAAAATAAA
59086837 TATATGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 11 0.41
22 15 0.56
23 1 0.04
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAAAATAAAAATTTAAATATT
Found at i:59086831 original size:16 final size:16
Alignment explanation
Indices: 59086810--59086853 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
59086800 ATTCTTAAAA
59086810 ATAAAAATTTAAATAT
1 ATAAAAATTTAAATAT
59086826 -TAAAAA-TTAAATAT
1 ATAAAAATTTAAATAT
*
59086840 ATGAAAAATATAAA
1 AT-AAAAATTTAAA
59086854 AACTTTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
14 8 0.33
15 7 0.29
16 5 0.21
17 4 0.17
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
ATAAAAATTTAAATAT
Found at i:59094789 original size:40 final size:40
Alignment explanation
Indices: 59094733--59094813 Score: 126
Period size: 40 Copynumber: 2.0 Consensus size: 40
59094723 CCTAATTGGG
* * * *
59094733 AAAATAATTCCCTTATTCTAATAAAGTACTAGAAGATAAA
1 AAAATAATTCCATTATTCTAATAAACTACTAAAACATAAA
59094773 AAAATAATTCCATTATTCTAATAAACTACTAAAACATAAA
1 AAAATAATTCCATTATTCTAATAAACTACTAAAACATAAA
59094813 A
1 A
59094814 TAAAATATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.53, C:0.14, G:0.04, T:0.30
Consensus pattern (40 bp):
AAAATAATTCCATTATTCTAATAAACTACTAAAACATAAA
Found at i:59094873 original size:19 final size:19
Alignment explanation
Indices: 59094849--59094889 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
59094839 TGATTTATTC
59094849 TAAGATTTACCTACCTAAA
1 TAAGATTTACCTACCTAAA
**
59094868 TAAGATTTATTTACCTAAA
1 TAAGATTTACCTACCTAAA
59094887 TAA
1 TAA
59094890 CTTTAAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (19 bp):
TAAGATTTACCTACCTAAA
Found at i:59097101 original size:47 final size:47
Alignment explanation
Indices: 59097031--59097124 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 47
59097021 AAATCTAAAA
*
59097031 AAAAATTATTTGCATGATAAGTTGCAAC-TAAGTTTGCGACTTGTTAC
1 AAAAATTAGTTGCATGATAAGTTGCAACGT-AGTTTGCGACTTGTTAC
* * *
59097078 AAAAATTAGTTGCATGGTGAGTTGCAACGTAGTTTGTGACTTGTTAC
1 AAAAATTAGTTGCATGATAAGTTGCAACGTAGTTTGCGACTTGTTAC
59097125 GACAAAGCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
47 41 0.98
48 1 0.02
ACGTcount: A:0.31, C:0.12, G:0.21, T:0.36
Consensus pattern (47 bp):
AAAAATTAGTTGCATGATAAGTTGCAACGTAGTTTGCGACTTGTTAC
Found at i:59097196 original size:60 final size:61
Alignment explanation
Indices: 59097074--59097200 Score: 220
Period size: 60 Copynumber: 2.1 Consensus size: 61
59097064 TTGCGACTTG
*
59097074 TTACAAAAATTAGTTGCATGGTGAGTTGCAACGTAGTTTGTGACTTGTTACGACAAAGCCA
1 TTACTAAAATTAGTTGCATGGTGAGTTGCAACGTAGTTTGTGACTTGTTACGACAAAGCCA
* *
59097135 TTACTAAAATTAGTTGCATGGTGAGTTGCAAC-TTGTTTGTGACTTGTTGCGACAAAGCCA
1 TTACTAAAATTAGTTGCATGGTGAGTTGCAACGTAGTTTGTGACTTGTTACGACAAAGCCA
59097195 TTACTA
1 TTACTA
59097201 TGAGCTGAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
60 32 0.51
61 31 0.49
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (61 bp):
TTACTAAAATTAGTTGCATGGTGAGTTGCAACGTAGTTTGTGACTTGTTACGACAAAGCCA
Found at i:59098707 original size:18 final size:18
Alignment explanation
Indices: 59098684--59098758 Score: 114
Period size: 18 Copynumber: 4.2 Consensus size: 18
59098674 ACCGTTTACG
59098684 GTACTATTCACGTATACA
1 GTACTATTCACGTATACA
*
59098702 GTACTATTCACGTATACG
1 GTACTATTCACGTATACA
* *
59098720 GCACTATTCACGTATACG
1 GTACTATTCACGTATACA
*
59098738 GTACTGTTCACGTATACA
1 GTACTATTCACGTATACA
59098756 GTA
1 GTA
59098759 GTTGGGATTG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (18 bp):
GTACTATTCACGTATACA
Found at i:59106555 original size:12 final size:12
Alignment explanation
Indices: 59106538--59106572 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
59106528 TTAATATGTT
59106538 TATACACATATA
1 TATACACATATA
59106550 TATACACATATA
1 TATACACATATA
*
59106562 TATATACATAT
1 TATACACATAT
59106573 GTAAGTAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (12 bp):
TATACACATATA
Found at i:59118466 original size:15 final size:16
Alignment explanation
Indices: 59118448--59118490 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
59118438 GGCATTTATT
59118448 TTTTTAAAAAAAA-TA
1 TTTTTAAAAAAAACTA
59118463 TTTTTAAATAAAAACTA
1 TTTTTAAA-AAAAACTA
* *
59118480 ATCTTAAAAAA
1 TTTTTAAAAAA
59118491 TTAAATATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 8 0.33
16 8 0.33
17 8 0.33
ACGTcount: A:0.58, C:0.05, G:0.00, T:0.37
Consensus pattern (16 bp):
TTTTTAAAAAAAACTA
Found at i:59131566 original size:31 final size:31
Alignment explanation
Indices: 59131502--59131585 Score: 84
Period size: 31 Copynumber: 2.8 Consensus size: 31
59131492 AAGTTATGGA
* *
59131502 TTTAGTCTTTATA--TTTTAATTTGATCAAT
1 TTTAGTCCTTATACTTTTTAATTTGATCAAG
*
59131531 TTTAGTCCTTATACTTTTTGAA-TTGGTCAAG
1 TTTAGTCCTTATACTTTTT-AATTTGATCAAG
* * *
59131562 TTTAGTCCCTATTCTTTTCAATTT
1 TTTAGTCCTTATACTTTTTAATTT
59131586 TTGAAATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
29 12 0.27
30 2 0.04
31 29 0.64
32 2 0.04
ACGTcount: A:0.23, C:0.13, G:0.10, T:0.55
Consensus pattern (31 bp):
TTTAGTCCTTATACTTTTTAATTTGATCAAG
Found at i:59134157 original size:23 final size:22
Alignment explanation
Indices: 59134121--59134163 Score: 77
Period size: 23 Copynumber: 1.9 Consensus size: 22
59134111 TATCCCTAAA
59134121 AAATTTTTGAAATAATCTCTGG
1 AAATTTTTGAAATAATCTCTGG
59134143 AAATTTTCTGAAATAATCTCT
1 AAATTTT-TGAAATAATCTCT
59134164 TCAGATAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.37, C:0.12, G:0.09, T:0.42
Consensus pattern (22 bp):
AAATTTTTGAAATAATCTCTGG
Found at i:59134347 original size:20 final size:18
Alignment explanation
Indices: 59134297--59134348 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
59134287 CTACAAGATA
59134297 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
59134314 AATATT-AATATAATCACTTT
1 AATATTAAAT-TAAT-A-TTT
59134334 AATATTAAATTAATA
1 AATATTAAATTAATA
59134349 AAATACTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.10
17 9 0.30
19 2 0.07
20 13 0.43
21 3 0.10
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:59134394 original size:37 final size:37
Alignment explanation
Indices: 59134292--59134395 Score: 98
Period size: 37 Copynumber: 3.0 Consensus size: 37
59134282 TTTATCTACA
59134292 AGATAAATATTAAATTAAATTTAATATT-AA-TA--T
1 AGATAAATATTAAATTAAATTTAATATTAAACTATTT
* * *
59134325 A-ATCACT-TTAATATTAAA-TTAATA-AAATACTATTT
1 AGATAAATATTAA-ATTAAATTTAATATTAA-ACTATTT
*
59134360 AGATAAGTATTAAATTAAATTTAATATTAAACTATT
1 AGATAAATATTAAATTAAATTTAATATTAAACTATT
59134396 AAAATAATAT
Statistics
Matches: 55, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
31 11 0.20
32 11 0.20
33 3 0.05
35 2 0.04
36 10 0.18
37 16 0.29
38 2 0.04
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.42
Consensus pattern (37 bp):
AGATAAATATTAAATTAAATTTAATATTAAACTATTT
Found at i:59140621 original size:43 final size:42
Alignment explanation
Indices: 59140569--59140680 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 42
59140559 ATATATTGAA
* * *
59140569 GCCACTGTCCCAAACAGGGTCTTACACGA-AA-TCAATTAACGAT
1 GCCAATGTCCCAGACAGGGTCTTACAC-ATAACTCAA-T-ACAAT
* *
59140612 GCCAATGTCCTAGATAGGGTCTTACACATAATCTCAATACAAT
1 GCCAATGTCCCAGACAGGGTCTTACACATAA-CTCAATACAAT
* *
59140655 GCCAATGTCCCAGACATGGCCTTACA
1 GCCAATGTCCCAGACAGGGTCTTACA
59140681 TGTAATCACA
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
42 1 0.02
43 51 0.89
44 1 0.02
45 4 0.07
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (42 bp):
GCCAATGTCCCAGACAGGGTCTTACACATAACTCAATACAAT
Found at i:59149826 original size:44 final size:43
Alignment explanation
Indices: 59149745--59149877 Score: 135
Period size: 42 Copynumber: 3.1 Consensus size: 43
59149735 ACATAGGATT
* * * *
59149745 TCGATATGTGATTTCGTGTAAGACCACGTCTGAGACATTGGCA
1 TCGATATGAGATTTCGTGTAAGACTATGTCTGGGACATTGGCA
* * * *
59149788 TCGATTTGAGATTTACGTGTAAGACTATGTTTGGGACATCGACA
1 TCGATATGAGATTT-CGTGTAAGACTATGTCTGGGACATTGGCA
* * *
59149832 TCG-TAT-ATGATTTCGTGTAAGACTCTGTGTGGGACAGTGGCA
1 TCGATATGA-GATTTCGTGTAAGACTATGTCTGGGACATTGGCA
59149874 TCGA
1 TCGA
59149878 CATTTGATTA
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
42 28 0.38
43 19 0.26
44 26 0.36
ACGTcount: A:0.25, C:0.16, G:0.27, T:0.32
Consensus pattern (43 bp):
TCGATATGAGATTTCGTGTAAGACTATGTCTGGGACATTGGCA
Found at i:59152047 original size:35 final size:35
Alignment explanation
Indices: 59152006--59152096 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 35
59151996 CATAAGTAAG
*
59152006 TACATGTAAGCTTATATTGAACTTGTA-TATTCGGT
1 TACATGTAAGCTTATATTGAA-TTGTAGTATTCGAT
* * * *
59152041 TGCATGTAAGGTTGTATTGAATTTTAGTATTCGAT
1 TACATGTAAGCTTATATTGAATTGTAGTATTCGAT
59152076 TACATGTGAA-CTTATATTGAA
1 TACATGT-AAGCTTATATTGAA
59152097 AATGTATACT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
34 4 0.09
35 40 0.87
36 2 0.04
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.43
Consensus pattern (35 bp):
TACATGTAAGCTTATATTGAATTGTAGTATTCGAT
Found at i:59156873 original size:59 final size:59
Alignment explanation
Indices: 59156766--59156929 Score: 136
Period size: 59 Copynumber: 2.7 Consensus size: 59
59156756 TTTATTTTTA
* * * * * *
59156766 AATTTAGTACCTAAATTTTTTTTGGCT-AGATTCGATATCTGAACTTGACA-CATTTTCCT
1 AATTTAGTACTTAAATTTTTTTAGGCTCA-ATTTGGTA-CTAAATTTGACAGCATTTTCCT
* **
59156825 AATTTAGTACTTAAATTTTTTTGGGCTCAATTTGGTACATAAATTTGACAGTTTTTTCCT
1 AATTTAGTACTTAAATTTTTTTAGGCTCAATTTGGTAC-TAAATTTGACAGCATTTTCCT
* ** *
59156885 AATTTGGTA-TCTAGGCTTTTTTTAGGTTCAATTTGGTACCTAAAT
1 AATTTAGTACT-TA-AATTTTTTTAGGCTCAATTTGGTA-CTAAAT
59156930 ATACAAATTG
Statistics
Matches: 86, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
58 1 0.01
59 41 0.48
60 18 0.21
61 25 0.29
62 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.14, T:0.46
Consensus pattern (59 bp):
AATTTAGTACTTAAATTTTTTTAGGCTCAATTTGGTACTAAATTTGACAGCATTTTCCT
Found at i:59157432 original size:30 final size:31
Alignment explanation
Indices: 59157375--59157448 Score: 96
Period size: 30 Copynumber: 2.4 Consensus size: 31
59157365 CTCCAAAAGA
* * * *
59157375 TTAAATACCAACTTAATAAAAAGTATCAAGT
1 TTAAGTACCAAATTAATAAAAAATATCAAAT
59157406 TTAAGTACCAAATTAA-AAAAAATATCAAAT
1 TTAAGTACCAAATTAATAAAAAATATCAAAT
*
59157436 TCAAGTACCAAAT
1 TTAAGTACCAAAT
59157449 ATTATATTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
30 24 0.63
31 14 0.37
ACGTcount: A:0.54, C:0.14, G:0.05, T:0.27
Consensus pattern (31 bp):
TTAAGTACCAAATTAATAAAAAATATCAAAT
Found at i:59167334 original size:23 final size:23
Alignment explanation
Indices: 59167285--59167334 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 23
59167275 ATTACCTTTT
*
59167285 TATTACTATTGTTATTAACCTAC
1 TATTACTATTGTTATTAACATAC
* * * *
59167308 TATTATTATTTTTATTAATATAG
1 TATTACTATTGTTATTAACATAC
59167331 TATT
1 TATT
59167335 GCTTTCTTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (23 bp):
TATTACTATTGTTATTAACATAC
Found at i:59167539 original size:22 final size:21
Alignment explanation
Indices: 59167514--59167554 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
59167504 TTATCATCAT
*
59167514 TTACCATTATATTTTTTTATTA
1 TTACCATTAT-TTTTATTATTA
*
59167536 TTACTATTATTTTTATTAT
1 TTACCATTATTTTTATTAT
59167555 CCGTCCTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.66
Consensus pattern (21 bp):
TTACCATTATTTTTATTATTA
Found at i:59167550 original size:18 final size:16
Alignment explanation
Indices: 59167519--59167554 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
59167509 ATCATTTACC
59167519 ATTATATTTTTTTATT
1 ATTATATTTTTTTATT
59167535 ATTACTATTATTTTTATT
1 ATTA-TATT-TTTTTATT
59167553 AT
1 AT
59167555 CCGTCCTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 4 0.22
18 10 0.56
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (16 bp):
ATTATATTTTTTTATT
Found at i:59174310 original size:133 final size:133
Alignment explanation
Indices: 59174065--59174325 Score: 380
Period size: 133 Copynumber: 2.0 Consensus size: 133
59174055 AACATCGGTG
* * *
59174065 AAATTGCAGATCTTATCTCTCTAAGTAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTCCA
1 AAATTGCAGATCTTATCTCTCTAAGCAGTAGTAGAGCAGATCAAAGACCGTAAATCTTATCTCCA
* * * * * * * *
59174130 TGTAGTGGCAATGGAGTAGATTTAAGCCACTAGTCTTATTTCCCTGAAGTTGCTGTGGAGCAGAC
66 TGTAGTGGCAATAGAGCAAATTTAAGCCACCAATCTTATATACCTGAAGTTGCAGTGGAGCAGAC
59174195 TGA
131 TGA
**
59174198 AAATTGCAGATCTTATCTC-CTTAAGCAGTAGTAGAGCAGATTGAAGACCGTAAATCTTATCTCC
1 AAATTGCAGATCTTATCTCTC-TAAGCAGTAGTAGAGCAGATCAAAGACCGTAAATCTTATCTCC
*
59174262 ATGTAGTGGCAATAGAGCAAATTTAAGCCACCAATCTTATATATCTGAAGTTGCAGTGGAGCAG
65 ATGTAGTGGCAATAGAGCAAATTTAAGCCACCAATCTTATATACCTGAAGTTGCAGTGGAGCAG
59174326 GTTCAAGATA
Statistics
Matches: 113, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
132 1 0.01
133 112 0.99
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (133 bp):
AAATTGCAGATCTTATCTCTCTAAGCAGTAGTAGAGCAGATCAAAGACCGTAAATCTTATCTCCA
TGTAGTGGCAATAGAGCAAATTTAAGCCACCAATCTTATATACCTGAAGTTGCAGTGGAGCAGAC
TGA
Found at i:59174324 original size:44 final size:44
Alignment explanation
Indices: 59174276--59174366 Score: 101
Period size: 44 Copynumber: 2.1 Consensus size: 44
59174266 AGTGGCAATA
* * * *
59174276 GAGCAAATTTAAGCCACCAATCTTATATATCTGAAGTTGCAGTG
1 GAGCAAATTCAAGACACAAATCTTATATACCTGAAGTTGCAGTG
** * * *
59174320 GAGCAGGTTCAAGATACAAATCTTATCTCCCTGAAGTTGCAGTG
1 GAGCAAATTCAAGACACAAATCTTATATACCTGAAGTTGCAGTG
59174364 GAG
1 GAG
59174367 TAGACTAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (44 bp):
GAGCAAATTCAAGACACAAATCTTATATACCTGAAGTTGCAGTG
Found at i:59174437 original size:177 final size:176
Alignment explanation
Indices: 59174163--59174678 Score: 737
Period size: 177 Copynumber: 2.9 Consensus size: 176
59174153 AAGCCACTAG
* *
59174163 TCTTATTTCCCTGAAGTTGCTGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGCAGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGCAGTA
* * *
59174228 GTAGAGCAGATTGAAGACCGTAAATCTTATCTCCATGTAGTGGCAATAGAGCAAATTTAAGCCAC
66 GTAGAGCAGATCGAAGA-CGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCAC
* **
59174293 CAATCTTATATATCTGAAGTTGCAGTGGAGCAGGTTCAAGATACAAA
130 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATACAAA
* * * * * *
59174340 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAAATTACAGATCTCATCTTCTTAAGTAGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGCAGTA
* * * * * * *
59174405 GTGGAGTAGATCGAAGACGACAAATTTTATCTCCATGTAGCGACAATGGAACAGATTTAAGCCAC
66 GTAGAGCAGATCGAAGACG-CAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCAC
* *
59174470 C-ATCCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACAAG
130 CAAT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATACAAA
* * *
59174517 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTGCAAATCTTATCTCCCTAAGCAGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGCAGTA
*
59174582 GTAGAGCAGATCGAAGAAGGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCAC
66 GTAGAGCAGATCGAAG-ACGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCAC
*
59174647 CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCA
130 CAATCTTATCTCCCTGAAGTTGCAGTGGAGCA
59174679 AACTGAAAAT
Statistics
Matches: 293, Mismatches: 42, Indels: 8
0.85 0.12 0.02
Matches are distributed among these distances:
176 4 0.01
177 286 0.98
178 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (176 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGCAGTA
GTAGAGCAGATCGAAGACGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCACC
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTCAAGATACAAA
Found at i:59174522 original size:44 final size:45
Alignment explanation
Indices: 59174474--59175018 Score: 157
Period size: 44 Copynumber: 12.3 Consensus size: 45
59174464 AGCCACCATC
* * *
59174474 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGA-TACAAGT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
* * *
59174518 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTGCAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
** * * **
59174563 CTTATCTCCCT-AAGCAGTAGTAGAGCAGA-TCGAAGAA-GGCAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTC-AA-AATTACAAAT
* ** * * * * *** * *
59174607 CTTATCTCCATGTAGTGGCAATAGAGCAGATT-TAAGCCACCAGT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
* * * * *
59174651 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTACAGAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
**** * * * ***
59174696 CTTATCTCCCT-AAGCAATAGTGAAGTAGA-TCGAATACGGCAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTC-AAAATTACAAAT
* ** * * * * * *
59174740 CTTATCTCCATGTAG-CGAAAATGGAGCAGATTTAAGCCA-T-C-AGT
1 CTTATCTCCCTAAAGTTG-CAGTGGAGCAGATTCAA--AATTACAAAT
* * * * * *
59174784 CTTATCTTCCTAAAGTTGCAGTGAAGCAGGTTTAAGA-TACAAGT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
* * * * *
59174828 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
* * * * * **
59174873 CTTATCT-CCTTAAGTAGTAGTGGAGCAGA-CCGAAGACGACAAAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTC-AAAATTACAAAT
** * ** * * * *** ***
59174917 CTTATCTCTATATAGCAGCAATGGAGTAGATT-TAAGCCACCGGT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
* * * *
59174961 CTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATTACAGAT
1 CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
*
59175006 CTTATCTCTCTAA
1 CTTATCTCCCTAA
59175019 GTAGTAGTAA
Statistics
Matches: 355, Mismatches: 125, Indels: 41
0.68 0.24 0.08
Matches are distributed among these distances:
42 2 0.01
43 4 0.01
44 242 0.68
45 104 0.29
46 2 0.01
47 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (45 bp):
CTTATCTCCCTAAAGTTGCAGTGGAGCAGATTCAAAATTACAAAT
Found at i:59174611 original size:133 final size:133
Alignment explanation
Indices: 59174474--59174811 Score: 374
Period size: 133 Copynumber: 2.5 Consensus size: 133
59174464 AGCCACCATC
* * * * * *
59174474 CTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCATAAAGTGGCAATAGAGCAGATTCAAGACACAAGTCTTATCTCCCTGAAGTTGCAG
* * * *
59174539 TGGAGCAGATTGAAAATTGCAAATCTTATCTCCCTAAGCAGTAGT-AGAGCAGATCGAAGAAGGC
66 TGGAGCAAACTGAAAATTACAAATCTTATCTCCCTAAGCAATAGTGA-AGCAGATCGAAGAAGGC
59174603 AAAT
130 AAAT
** * * *
59174607 CTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCACCAGTCTTATCTCCCTGAAGTTGCAG
1 CTTATCTCCATAAAGTGGCAATAGAGCAGATTCAAGACACAAGTCTTATCTCCCTGAAGTTGCAG
* * * *
59174672 TGGAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAATAGTGAAGTAGATCGAATACGGCA
66 TGGAGCAAACTGAAAATTACAAATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGAAGAAGGCA
59174737 AAT
131 AAT
** * ** * * * * *
59174740 CTTATCTCCATGTAGCGAAAATGGAGCAGATTTAAGCCATC-AGTCTTATCTTCCTAAAGTTGCA
1 CTTATCTCCATAAAGTGGCAATAGAGCAGATTCAAGACA-CAAGTCTTATCTCCCTGAAGTTGCA
*
59174804 GTGAAGCA
65 GTGGAGCA
59174812 GGTTTAAGAT
Statistics
Matches: 177, Mismatches: 26, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
133 175 0.99
134 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (133 bp):
CTTATCTCCATAAAGTGGCAATAGAGCAGATTCAAGACACAAGTCTTATCTCCCTGAAGTTGCAG
TGGAGCAAACTGAAAATTACAAATCTTATCTCCCTAAGCAATAGTGAAGCAGATCGAAGAAGGCA
AAT
Found at i:59174656 original size:310 final size:309
Alignment explanation
Indices: 59174340--59175288 Score: 1292
Period size: 310 Copynumber: 3.1 Consensus size: 309
59174330 AAGATACAAA
* * *
59174340 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAAAATTACAGATCTCATCTTCTTAAGTAGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAGATCTTATCTTCTTAAGTAGTA
* * *
59174405 GTGGAGTAGATCGAAGACGACAAATTTTATCTCCATGTAGCGACAATGGAACAGATTTAAGCCAC
66 GTGAAGTAGATCGAAGACGACAAATCTTATCTCCATGTAGCGACAATGGAGCAGATTTAAGCCAC
59174470 CATCCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAAGTT
131 CATCCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAAGTT
*
59174535 GCAGTGGAGCAGATTGAAAATTGCAAATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGAA
196 GCAGTGGAGCAGACTGAAAATTGCAAATCTTATCTCCCTAAGCAGTAGT-GAGCAGATCGAAGAA
* * * *
59174600 GGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCACCAG
260 GGCAAATCTTATCTCTATGTAGCGGCAATGGAGTAGATTTAAGCCACCAG
* * * * *
59174650 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAATA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAGATCTTATCTTCTTAAGTAGTA
* * * *
59174715 GTGAAGTAGATCGAATACGGCAAATCTTATCTCCATGTAGCGAAAATGGAGCAGATTTAAGCCAT
66 GTGAAGTAGATCGAAGACGACAAATCTTATCTCCATGTAGCGACAATGGAGCAGATTTAAGCCAC
* * *
59174780 CAGT-CTTATCTTCCTAAAGTTGCAGTGAAGCAGGTTTAAGATACAAGTCTTATCTCCCTGAAGT
131 CA-TCCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAAGT
* * * *
59174844 TGCAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGTAGTAGTGGAGCAGACCGAAGA
195 TGCAGTGGAGCAGACTGAAAATTGCAAATCTTATCTCCCTAAGCAGTAGT-GAGCAGATCGAAGA
* * * * *
59174909 CGACAAATCTTATCTCTATATAGCAGCAATGGAGTAGATTTAAGCCACCGG
259 AGGCAAATCTTATCTCTATGTAGCGGCAATGGAGTAGATTTAAGCCACCAG
* *
59174960 TCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATTACAGATCTTATC-TCTCTAAGTAGT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAGATCTTATCTTCT-TAAGTAGT
* * * * * * * * *
59175024 AGTAAAGTAGATCGAGGGC-AGCGAATCTTATCTCTATGTAGCGGCAATAGAGCTGATTTAAGCT
65 AGTGAAGTAGATCGAAGACGA-CAAATCTTATCTCCATGTAGCGACAATGGAGCAGATTTAAGCC
* ** * *
59175088 ACCAGCCTTATCTCTTTAAAGTTGCAGTGGAGCAGGTTCAATATACAAGTCTTATCTCCTTGAAG
129 ACCATCCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAAG
* * ** * *
59175153 TTGCAGTGGAGCAAACTGAAGATAACGAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAAT
194 TTGCAGTGGAGCAGACTGAAAATTGCAAATCTTATCTCCCTAAGCAGTAGTG-AGCAGATCGAAG
* *
59175218 ATGGCAAATCTTATCTCTATGTAGCGGCAATGGAGTAGATTTAAGTCACCAG
258 AAGGCAAATCTTATCTCTATGTAGCGGCAATGGAGTAGATTTAAGCCACCAG
* *
59175270 ATCTTATTTCCTTGAAGTT
1 -TCTTATCTCCCTGAAGTT
59175289 ACAGCGGAAT
Statistics
Matches: 553, Mismatches: 80, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
309 2 0.00
310 535 0.97
311 16 0.03
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (309 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTACAGATCTTATCTTCTTAAGTAGTA
GTGAAGTAGATCGAAGACGACAAATCTTATCTCCATGTAGCGACAATGGAGCAGATTTAAGCCAC
CATCCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACAAGTCTTATCTCCCTGAAGTT
GCAGTGGAGCAGACTGAAAATTGCAAATCTTATCTCCCTAAGCAGTAGTGAGCAGATCGAAGAAG
GCAAATCTTATCTCTATGTAGCGGCAATGGAGTAGATTTAAGCCACCAG
Found at i:59174740 original size:177 final size:177
Alignment explanation
Indices: 59174163--59174924 Score: 625
Period size: 177 Copynumber: 4.3 Consensus size: 177
59174153 AAGCCACTAG
* * * * *
59174163 TCTTATTTCCCTGAAGTTGCTGTGGAGCAGA-CTGAAAATTG-CAGATCTTATCTCCTTAAGCAG
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATC-GAAAA-CGACAAATCTTATCTCCTTAAGCAG
* ** * *
59174226 TAGTAGAGCAGATTGAAGACCGTAAATCTTATCTCCATGTAGTGGCAATAGAGCAAATTTAAGCC
64 TAGTAGAGCAGATCGAAGAAGGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCC
* * ** ** * *
59174291 ACCAATCTTATATATCTGAAGTTGCAGTGGAGCAGGTTCAAGATACAAA
129 ACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAAATACAGA
* * * ** * * * *
59174340 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-CTAAAAATTACAGATCTCATCTTCTTAAGTAGT
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATC-GAAAACGACAAATCTTATCTCCTTAAGCAGT
* * * * * * * * *
59174404 AGTGGAGTAGATCGAAGACGACAAATTTTATCTCCATGTAGCGACAATGGAACAGATTTAAGCCA
65 AGTAGAGCAGATCGAAGAAGGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCA
* ** *
59174469 CCA-TCCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTCAAGATACA-A
130 CCAGT-CTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAAATACAGA
* * * *
59174516 GTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTG-CAAATCTTATCTCCCTAAGCAG
1 -TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCGAAAA-CGACAAATCTTATCTCCTTAAGCAG
59174580 TAGTAGAGCAGATCGAAGAAGGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCC
64 TAGTAGAGCAGATCGAAGAAGGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCC
* *
59174645 ACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTACAGA
129 ACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAAA-TACAGA
* ** * * * *
59174695 TCTTATCTCCCT-AAGCAATAGTGAAGTAGATCGAATACGGCAAATCTTATCTCCATGT-AGC-G
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCGAAAACGACAAATCTTATCTCC-T-TAAGCAG
* * * ** * * * ** * * *
59174757 AAAATGGAGCAGATTTAAGCCA-TC-AGTCTTATCTTCC-TAAAGTTGCAGT-GAAGCAGGTTTA
64 -TAGTAGAGCAGATCGAAG-AAGGCAAATCTTATC-TCCATGTAGTGGCAATAG-AGCAGATTTA
** * * *
59174818 AGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGA
125 AGCCACCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAAA-TACAGA
* * * *
59174872 TCTTATCT-CCTTAAGTAGTAGTGGAGCAGACCGAAGACGACAAATCTTATCTC
1 TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCGAAAACGACAAATCTTATCTC
59174925 TATATAGCAG
Statistics
Matches: 486, Mismatches: 83, Indels: 32
0.81 0.14 0.05
Matches are distributed among these distances:
176 8 0.02
177 437 0.90
178 38 0.08
179 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (177 bp):
TCTTATCTCCCTGAAGTAGCAGTGGAGCAGATCGAAAACGACAAATCTTATCTCCTTAAGCAGTA
GTAGAGCAGATCGAAGAAGGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCCAC
CAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAAATACAGA
Found at i:59174875 original size:133 final size:132
Alignment explanation
Indices: 59174515--59174881 Score: 434
Period size: 133 Copynumber: 2.8 Consensus size: 132
59174505 TCAAGATACA
* *
59174515 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTGCAAATCTTATCTCCCTAAGCAG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTACAAGTCTTATCTCCCTAAGCAG
* * **
59174580 TAGTAGAGCAGATCGAAGAAGGCAAATCTTATCTCCATGTAGTGGCAATAGAGCAGATTTAAGCC
66 TAGTGGAGCAGATCGAA-AAGGCAAATCTTATCTCCATGTAGCGAAAATAGAGCAGATTTAAGCC
59174645 ACC
130 ACC
* *
59174648 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTAC-AGATCTTATCTCCCTAAGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTACAAG-TCTTATCTCCCTAAGCA
* * * * *
59174712 ATAGTGAAGTAGATCGAATACGGCAAATCTTATCTCCATGTAGCGAAAATGGAGCAGATTTAAGC
65 GTAGTGGAGCAGATCGAA-AAGGCAAATCTTATCTCCATGTAGCGAAAATAGAGCAGATTTAAGC
*
59174777 CATC
129 CACC
* * * * * * **
59174781 AGTCTTATCTTCCTAAAGTTGCAGTGAAGCAGGTTTAAGA-TACAAGTCTTATCTCCCTGAAGTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTACAAGTCTTATCTCCCT-AAGCA
* * *
59174845 GCAGTGGAGCAGA-CTGAAAATTGCAGATCTTATCTCC
65 GTAGTGGAGCAGATC-GAAAA-GGCAAATCTTATCTCC
59174882 TTAAGTAGTA
Statistics
Matches: 197, Mismatches: 32, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
132 18 0.09
133 179 0.91
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (132 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATTACAAGTCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAAAGGCAAATCTTATCTCCATGTAGCGAAAATAGAGCAGATTTAAGCCA
CC
Found at i:59174920 original size:133 final size:133
Alignment explanation
Indices: 59174805--59175122 Score: 347
Period size: 133 Copynumber: 2.4 Consensus size: 133
59174795 AAAGTTGCAG
* * * * *
59174805 TGAAGCAGGTTTAAGATACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCA
1 TGAAGCAGATTTAAGACACAAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATTACA
59174870 GATCTTATCTC-CTTAAGTAGTAGTGGAGCAGACCGAAGACGACAAATCTTATCTCTATATAGCA
66 GATCTTATCTCTC-TAAGTAGTAGTGGAGCAGACCGAAGACGACAAATCTTATCTCTATATAGCA
59174934 GCAA
130 GCAA
* * * **
59174938 TGGAGTAGATTTAAGCCACCGGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATTACA
1 TGAAGCAGATTTAAGACACAAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATTACA
** * * * * * * *
59175003 GATCTTATCTCTCTAAGTAGTAGTAAAGTAGATCGAGGGC-AGCGAATCTTATCTCTATGTAGCG
66 GATCTTATCTCTCTAAGTAGTAGTGGAGCAGACCGAAGACGA-CAAATCTTATCTCTATATAGCA
59175067 GCAA
130 GCAA
* * * ** *
59175071 T-AGAGCTGATTTAAG-CTACCAGCCTTATCTCTTTAAAGTTGCAGTGGAGCAG
1 TGA-AGCAGATTTAAGAC-ACAAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAG
59175123 GTTCAATATA
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
132 2 0.01
133 151 0.98
134 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (133 bp):
TGAAGCAGATTTAAGACACAAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATTACA
GATCTTATCTCTCTAAGTAGTAGTGGAGCAGACCGAAGACGACAAATCTTATCTCTATATAGCAG
CAA
Found at i:59174942 original size:177 final size:177
Alignment explanation
Indices: 59174648--59174989 Score: 515
Period size: 177 Copynumber: 1.9 Consensus size: 177
59174638 TTAAGCCACC
59174648 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAA
* * * * *
59174713 TAGTGAAGTAGATCGAATACGGCAAATCTTATCTCCATGTAGCGAAAATGGAGCAGATTTAAGCC
66 TAGTGAAGCAGACCGAAGACGACAAATCTTATCTCCATATAGCGAAAATGGAGCAGATTTAAGCC
* *
59174778 ATCAGTCTTATCTTCCTAAAGTTGCAGTGAAGCAGGTTTAAGATACA
131 ACCAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGGTTTAAGATACA
* * * * *
59174825 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGTAG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAA
* * * *
59174890 TAGTGGAGCAGACCGAAGACGACAAATCTTATCTCTATATAGC-AGCAATGGAGTAGATTTAAGC
66 TAGTGAAGCAGACCGAAGACGACAAATCTTATCTCCATATAGCGA-AAATGGAGCAGATTTAAGC
*
59174954 CACCGGTCTTATCTCCCTAAAGTTGCAGTGAAGCAG
130 CACCAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAG
59174990 ACTGAAAATT
Statistics
Matches: 147, Mismatches: 17, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
176 1 0.01
177 146 0.99
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (177 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTACAGATCTTATCTCCCTAAGCAA
TAGTGAAGCAGACCGAAGACGACAAATCTTATCTCCATATAGCGAAAATGGAGCAGATTTAAGCC
ACCAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGGTTTAAGATACA
Found at i:59175057 original size:177 final size:177
Alignment explanation
Indices: 59174648--59175030 Score: 423
Period size: 177 Copynumber: 2.2 Consensus size: 177
59174638 TTAAGCCACC
* ** * *
59174648 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAAATTA-CAGATCTTATCTCCCTAAGCA
1 AGTCTTATCTCCCTGAAGTAGCAGTAAAGCAGACTGAAAA-CAGCAGATCTTATCTCCCTAAGCA
* * * * *
59174712 ATAGTGAAGTAGATCGAATACGGCAAATCTTATCTCCATGTAGCGAAAATGGAGCAGATTTAAGC
65 ATAGTGAAGCAGACCGAAGACGACAAATCTTATCTCCATATAGCGAAAATGGAGCAGATTTAAGC
* * ** * *
59174777 CATCAGTCTTATCTTCCTAAAGTTGCAGTGAAGCAGGTTTAAGATACA
130 CACCAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATACA
* ** ** * * *
59174825 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAAATTGCAGATCTTATCTCCTTAAGTAG
1 AGTCTTATCTCCCTGAAGTAGCAGTAAAGCAGACTGAAAACAGCAGATCTTATCTCCCTAAGCAA
* * * *
59174890 TAGTGGAGCAGACCGAAGACGACAAATCTTATCTCTATATAGC-AGCAATGGAGTAGATTTAAGC
66 TAGTGAAGCAGACCGAAGACGACAAATCTTATCTCCATATAGCGA-AAATGGAGCAGATTTAAGC
*
59174954 CACCGGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATTAC-
130 CACCAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAA-TACA
* *
59175002 AGATCTTATCTCTCT-AAGTAGTAGTAAAG
1 AG-TCTTATCTCCCTGAAGTAGCAGTAAAG
59175031 TAGATCGAGG
Statistics
Matches: 176, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
176 2 0.01
177 160 0.91
178 14 0.08
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (177 bp):
AGTCTTATCTCCCTGAAGTAGCAGTAAAGCAGACTGAAAACAGCAGATCTTATCTCCCTAAGCAA
TAGTGAAGCAGACCGAAGACGACAAATCTTATCTCCATATAGCGAAAATGGAGCAGATTTAAGCC
ACCAGTCTTATCTCCCTAAAGTTGCAGTGAAGCAGACTGAAAATACA
Found at i:59175100 original size:177 final size:177
Alignment explanation
Indices: 59174917--59175262 Score: 390
Period size: 177 Copynumber: 2.0 Consensus size: 177
59174907 GACGACAAAT
* * * * **
59174917 CTTATCTCTATATAGCAGCAATGGAGTAGATTTAAGCCACCGGTCTTATCTCCCTAAAGTTGCAG
1 CTTATCTCTATAAAGCAGCAATGGAGCAGATTCAAGACACAAGTCTTATCTCCCTAAAGTTGCAG
* * * * * * *
59174982 TGAAGCAGACTGAAAATTAC-AGATCTTATCTCTCTAAGTAGTAGTAAAGTAGATCGAGGGCAGC
66 TGAAGCAAACTGAAAATAACGA-ATCTTATCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACAGC
*
59175046 GAATCTTATCTCTATGTAGCGGCAATAGAGCT-GATTTAAGCTACCAGC
130 AAATCTTATCTCTATGTAGCGGCAATAGAG-TAGATTTAAGCTACCAGC
* ** * * * * * *
59175094 CTTATCTCTTTAAAGTTGCAGTGGAGCAGGTTCAATATACAAGTCTTATCTCCTTGAAGTTGCAG
1 CTTATCTCTATAAAGCAGCAATGGAGCAGATTCAAGACACAAGTCTTATCTCCCTAAAGTTGCAG
* * * * **
59175159 TGGAGCAAACTGAAGATAACGAATCTTATCTCCCTAAGCAGTAGTGAAGCAGATCGAATATGGCA
66 TGAAGCAAACTGAAAATAACGAATCTTATCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACAGCA
*
59175224 AATCTTATCTCTATGTAGCGGCAATGGAGTAGATTTAAG
131 AATCTTATCTCTATGTAGCGGCAATAGAGTAGATTTAAG
59175263 TCACCAGATC
Statistics
Matches: 137, Mismatches: 30, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
176 1 0.01
177 135 0.99
178 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (177 bp):
CTTATCTCTATAAAGCAGCAATGGAGCAGATTCAAGACACAAGTCTTATCTCCCTAAAGTTGCAG
TGAAGCAAACTGAAAATAACGAATCTTATCTCCCTAAGCAGTAGTAAAGCAGATCGAAGACAGCA
AATCTTATCTCTATGTAGCGGCAATAGAGTAGATTTAAGCTACCAGC
Found at i:59175428 original size:133 final size:134
Alignment explanation
Indices: 59175267--59175559 Score: 392
Period size: 134 Copynumber: 2.2 Consensus size: 134
59175257 TTTAAGTCAC
* * * *
59175267 CAGATCTTATTTCCTTGAAGTTACAGCGGAATAGATCTAGGATAACAAACCTTATCTCTCTGAAG
1 CAGATCTTATCTCCTTGAAGTTGCAGCGGAATAGATCAAAGATAACAAACCTTATCTCTCTGAAG
* * * * * *
59175332 TTGCAG-AGAGCAGGTTGAAGTTACAGGTCTCATCTCTCTGAAGTTGCAGTGGAACATATCGAAG
66 TTGCAGTAGAACAGGTTGAAGTAACAAGTCTCATCTCCCTAAAGTTGCAGTGGAACAGATCGAAG
59175396 A-TA
131 ACTA
* * * **
59175399 GCAGATCTTATCTCCCTGAAGTTGTAGCGGAGTAGATCAAAGATAGTAAACCTTATCTCTCTGAA
1 -CAGATCTTATCTCCTTGAAGTTGCAGCGGAATAGATCAAAGATAACAAACCTTATCTCTCTGAA
* *
59175464 GTTGCAGTAGAACAGGTTGAAGTAACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAA
65 GTTGCAGTAGAACAGGTTGAAGTAACAAGTCTCATCTCCCTAAAGTTGCAGTGGAACAGATCGAA
59175529 GACTA
130 GACTA
* *
59175534 CAAACCTTATCTCCTTGAAGTTGCAG
1 CAGATCTTATCTCCTTGAAGTTGCAG
59175560 TGGAGCAGGT
Statistics
Matches: 137, Mismatches: 21, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
133 62 0.45
134 73 0.53
135 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (134 bp):
CAGATCTTATCTCCTTGAAGTTGCAGCGGAATAGATCAAAGATAACAAACCTTATCTCTCTGAAG
TTGCAGTAGAACAGGTTGAAGTAACAAGTCTCATCTCCCTAAAGTTGCAGTGGAACAGATCGAAG
ACTA
Found at i:59175540 original size:89 final size:90
Alignment explanation
Indices: 59175363--59175736 Score: 343
Period size: 89 Copynumber: 4.2 Consensus size: 90
59175353 TACAGGTCTC
* * * * *
59175363 ATCTCTCTGAAGTTGCAGTGGAACATATCGAAGATAGC-AGATCTTATCTCCCTGAAGTTGTAGC
1 ATCTCCCTGAAGTTGCAGTGGAACAGATTGAAG-TAACAAG-TCTTATCTCCCTGAAGTTGCAGC
* *
59175427 GGAGTAGATCAAAGA-TAGTAAACCTT
64 GGAGTAGATCGAAGACTAGCAAACCTT
* * * * *
59175453 ATCTCTCTGAAGTTGCAGTAGAACAGGTTGAAGTAACAAGTCTTATCTCCCTAAAGTTGCAGTGG
1 ATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTAACAAGTCTTATCTCCCTGAAGTTGCAGCGG
** *
59175518 AACAGATTGAAGACTA-CAAACCTT
66 AGTAGATCGAAGACTAGCAAACCTT
* * * * * * * * *
59175542 ATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAATTACAAACTCTTACCTCCTTGAAGTTCCAGCG
1 ATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTAAC-AAGTCTTATCTCCCTGAAGTTGCAGCG
* *
59175607 GAGTAGATCGAAG-TTA-CAAATCTCT
65 GAGTAGATCGAAGACTAGCAAACCT-T
* * * * *
59175632 -TCTCCCTGAAATTACATTGGAATAGATTGAAGCAACAAGTCTTATCTCCCTGAAGTTGCAGCGG
1 ATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTAACAAGTCTTATCTCCCTGAAGTTGCAGCGG
*
59175696 AGTAGA-CTGAAGAC-AGCTAATCC-T
66 AGTAGATC-GAAGACTAGC-AAACCTT
59175720 ATCTCCCTGAAGTTGCA
1 ATCTCCCTGAAGTTGCA
59175737 ATAGAGTGGA
Statistics
Matches: 226, Mismatches: 49, Indels: 19
0.77 0.17 0.06
Matches are distributed among these distances:
87 1 0.00
88 36 0.16
89 121 0.54
90 68 0.30
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (90 bp):
ATCTCCCTGAAGTTGCAGTGGAACAGATTGAAGTAACAAGTCTTATCTCCCTGAAGTTGCAGCGG
AGTAGATCGAAGACTAGCAAACCTT
Found at i:59175558 original size:45 final size:44
Alignment explanation
Indices: 59175093--59175736 Score: 227
Period size: 45 Copynumber: 14.5 Consensus size: 44
59175083 AAGCTACCAG
* * * * * * *
59175093 CCTTATCTCTTTAAAGTTGCAGTGGAGCAGGTTCAATATACAAG
1 CCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGATACAAA
* * * * *
59175137 TCTTATCTCCTTGAAGTTGCAGTGGAGCAAACTGAAGATAACGAA
1 CCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGAT-ACAAA
* * ** * * * *
59175182 TCTTATCTCCCT-AAGCAGTAGT-GAAGCAGATCGAATATGGCAAA
1 CCTTATCTCCTTGAAGTTGCAGTGGAA-CAGATTGAAGAT-ACAAA
* * ** * ** * *
59175226 TCTTATCT-CTATGTAGCGGCAATGGAGTAGATTTAAG-TCACCAGA
1 CCTTATCTCCT-TGAAGTTGCAGTGGAACAGATTGAAGAT-A-CAAA
* * * * * *
59175271 TCTTATTTCCTTGAAGTTACAGCGGAATAGATCT-AGGATAACAAA
1 CCTTATCTCCTTGAAGTTGCAGTGGAACAGAT-TGAAGAT-ACAAA
* * * * **
59175316 CCTTATCT-CTCTGAAGTTGCAG-AGAGCAGGTTGAAGTTACAGG
1 CCTTATCTCCT-TGAAGTTGCAGTGGAACAGATTGAAGATACAAA
* * * * *
59175359 TCTCATCT-CTCTGAAGTTGCAGTGGAACATATCGAAGATAGCAGA
1 CCTTATCTCCT-TGAAGTTGCAGTGGAACAGATTGAAGATA-CAAA
* * * * ** ** *
59175404 TCTTATCTCCCTGAAGTTGTAGCGGAGTAGATCAAAGATAGTAAA
1 CCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGATA-CAAA
* * *
59175449 CCTTATCT-CTCTGAAGTTGCAGTAGAACAGGTTGAAG-TAACAAG
1 CCTTATCTCCT-TGAAGTTGCAGTGGAACAGATTGAAGAT-ACAAA
* * *
59175493 TCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACTACAAA
1 CCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGA-TACAAA
* *
59175538 CCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAA-ATTACAAA
1 CCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGA-TACAAA
* * * ** * *
59175582 CTCTTACCTCCTTGAAGTTCCAGCGGAGTAGATCGAAGTTACAAA
1 C-CTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGATACAAA
* * * * * * *
59175627 TCTCT-TCTCCCTGAAATTACATTGGAATAGATTGAAGCA-ACAAG
1 CCT-TATCTCCTTGAAGTTGCAGTGGAACAGATTGAAG-ATACAAA
* * * ** * * *
59175671 TCTTATCTCCCTGAAGTTGCAGCGGAGTAGACTGAAGACAGCTAAT
1 CCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGATA-C-AAA
*
59175717 CC-TATCTCCCTGAAGTTGCA
1 CCTTATCTCCTTGAAGTTGCA
59175737 ATAGAGTGGA
Statistics
Matches: 447, Mismatches: 126, Indels: 53
0.71 0.20 0.08
Matches are distributed among these distances:
43 29 0.06
44 182 0.41
45 224 0.50
46 12 0.03
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (44 bp):
CCTTATCTCCTTGAAGTTGCAGTGGAACAGATTGAAGATACAAA
Found at i:59175598 original size:134 final size:132
Alignment explanation
Indices: 59175270--59175697 Score: 391
Period size: 134 Copynumber: 3.2 Consensus size: 132
59175260 AAGTCACCAG
* * * ** * *
59175270 ATCTTATTTCCTTGAAGTTACAGCGGAATAGATCTAGGATAACAAACCTTATCTCTCTGAAGTTG
1 ATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCAAAGAT-ACAAACCTTATCTCTCTGAAGTTG
* * * * * *
59175335 CAGAGAGCAGGTTGAAGTTACAGGTCTCATCTCTCTGAAGTTGCAGTGGAACATATCGAAGA-TA
65 CAGAGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACTA
*
59175399 GCAG
130 -CAA
* * *
59175403 ATCTTATCTCCCTGAAGTTGTAGCGGAGTAGATCAAAGATAGTAAACCTTATCTCTCTGAAGTTG
1 ATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCAAAGATA-CAAACCTTATCTCTCTGAAGTTG
* *
59175468 CAGTAGAACAGGTTGAAGTAACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACT
65 CAG-AGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACT
59175533 ACAA
129 ACAA
* * * * * * *
59175537 ACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTGAAA-TTACAAACTCTTACCTC-CTTGAAGT
1 ATCTTATCTCCCTGAAGTTGCAGCGGAGCA-GATCAAAGATACAAAC-CTTATCTCTC-TGAAGT
* * * * * * * * *
59175600 TCCAGCGGAGTAGATCGAAGTTACAAATCTCT-TCTCCCTGAAA-TTACATTGGAATAGATTGAA
63 TGCAG-AGAGCAGGTTGAAGTTACAAGTCT-TATCTCCCT-AAAGTTGCAGTGGAACAGATTGAA
*
59175663 G-CAACAA
125 GACTACAA
*
59175670 GTCTTATCTCCCTGAAGTTGCAGCGGAG
1 ATCTTATCTCCCTGAAGTTGCAGCGGAG
59175698 TAGACTGAAG
Statistics
Matches: 243, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
132 1 0.00
133 92 0.38
134 139 0.57
135 11 0.05
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (132 bp):
ATCTTATCTCCCTGAAGTTGCAGCGGAGCAGATCAAAGATACAAACCTTATCTCTCTGAAGTTGC
AGAGAGCAGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGATTGAAGACTAC
AA
Found at i:59176492 original size:3 final size:3
Alignment explanation
Indices: 59176484--59176812 Score: 53
Period size: 3 Copynumber: 109.0 Consensus size: 3
59176474 AAGGGGAGAG
* * * *
59176484 TAT TAT TAT TAT TAT TAT TAACC TAC TAT TAT TAT TTT TAT TAA TA-
1 TAT TAT TAT TAT TAT TAT T-A-T TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * * * *
59176530 TAA TAT TGT T-T TCT T-T T-T TTT TA- TAT TGT TAT TAT TAT TAG CACG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
* * *
59176575 TA- TAT TAT TAT TAT TAAT GTAT CAT TGT TAT TTT CTAT T-T TAT TAT
1 TAT TAT TAT TAT TAT T-AT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT
* * *
59176621 TACT T-T TAT TAC TAC TGT T-T CTAT TAT TAT TAT T-T TCAT TACT TCCAT
1 TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT T-AT TA-T T--AT
* * * *
59176669 TAT TAT T-T TCAT TAT TTT CTAT TAT CAT TAA TAT GTCGT T-T GT-T
1 TAT TAT TAT T-AT TAT TAT -TAT TAT TAT TAT TAT -T-AT TAT -TAT
* * * * * *
59176713 TAT TAT TAT TAT TAT TTT TAA CAC TAT TAT CAT CAT TA- TATT TACT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TA-T
* * * * * *
59176759 T-T TTT TAA TAT TAT TAC CAT TA- TAT T-T TTT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
59176804 TTT TAT TAT
1 TAT TAT TAT
59176813 CCGTTCTATT
Statistics
Matches: 242, Mismatches: 51, Indels: 66
0.67 0.14 0.18
Matches are distributed among these distances:
2 31 0.13
3 178 0.74
4 27 0.11
5 5 0.02
6 1 0.00
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:59176536 original size:23 final size:23
Alignment explanation
Indices: 59176487--59176536 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
59176477 GGGAGAGTAT
* *
59176487 TATTATTATTATTATTAACCTAC
1 TATTATTATTATTATTAACATAA
* *
59176510 TATTATTATTTTTATTAATATAA
1 TATTATTATTATTATTAACATAA
59176533 TATT
1 TATT
59176537 GTTTTCTTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (23 bp):
TATTATTATTATTATTAACATAA
Found at i:59176792 original size:22 final size:21
Alignment explanation
Indices: 59176760--59176812 Score: 70
Period size: 22 Copynumber: 2.5 Consensus size: 21
59176750 ATATTTACTT
*
59176760 TTTTTAATATTATTACCATTA
1 TTTTTATTATTATTACCATTA
* *
59176781 TATTTTTTTATTATTACTATTA
1 T-TTTTATTATTATTACCATTA
59176803 TTTTTATTAT
1 TTTTTATTAT
59176813 CCGTTCTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 9 0.33
22 18 0.67
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTATTATTATTACCATTA
Found at i:59177110 original size:126 final size:128
Alignment explanation
Indices: 59176974--59177235 Score: 329
Period size: 126 Copynumber: 2.1 Consensus size: 128
59176964 TTTTTCAAGT
* * *
59176974 AAAGGCAATATTC-GATATTTAGAAATTC-AATAAATCGTGTCCTAACATACTGGG-TTCTGGTT
1 AAAGGCAATATTCTG-TATTTAGAAATTCGAAT-AATCGTGCCCCAACATACTGGGTTTC-GATT
* * *
59177036 TTTCGTTTGATCTAAGTAAT-CGATTATCC-TTTT-AAATTAAAATACATGAGTTTTAAATAAAA
63 TTCCGTTTGATCTAAAT-ATCCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAA
59177098 TA
127 TA
* * * *
59177100 AAAGGCAATATTCTGTATTTAGAAATTCGAGTAGTCGTGCCCCAACGTATTGGGTTTCGATTTTC
1 AAAGGCAATATTCTGTATTTAGAAATTCGAATAATCGTGCCCCAACATACTGGGTTTCGATTTTC
* *
59177165 CGTTTGATCTAAATATCCGAATATCCTTTTTAAAATTTAAATACATGAGTTTTAAATGAAATA
66 CGTTTGATCTAAATATCCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAATA
*
59177228 GAAGGCAA
1 AAAGGCAA
59177236 GCTCATACTC
Statistics
Matches: 117, Mismatches: 13, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
125 2 0.02
126 69 0.59
127 10 0.09
128 36 0.31
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (128 bp):
AAAGGCAATATTCTGTATTTAGAAATTCGAATAATCGTGCCCCAACATACTGGGTTTCGATTTTC
CGTTTGATCTAAATATCCGAATATCCTTTTTAAAATTAAAATACATGAGTTTTAAATAAAATA
Found at i:59202349 original size:18 final size:18
Alignment explanation
Indices: 59202302--59202352 Score: 51
Period size: 13 Copynumber: 3.2 Consensus size: 18
59202292 AATAGGATAA
59202302 TATATTTAA-TAAGTCCT
1 TATATTTAATTAAGTCCT
*
59202319 T-TA---AATTTA-TCCT
1 TATATTTAATTAAGTCCT
59202332 TATATTTAATTAAGTCCT
1 TATATTTAATTAAGTCCT
59202350 TAT
1 TAT
59202353 GCTTACAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 11
0.67 0.05 0.28
Matches are distributed among these distances:
13 7 0.27
14 4 0.15
16 2 0.08
17 6 0.23
18 7 0.27
ACGTcount: A:0.33, C:0.12, G:0.04, T:0.51
Consensus pattern (18 bp):
TATATTTAATTAAGTCCT
Found at i:59209088 original size:16 final size:17
Alignment explanation
Indices: 59209069--59209101 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
59209059 GTATGAAATA
59209069 TTTA-ATGAAATTTATT
1 TTTACATGAAATTTATT
59209085 TTTACATGAAATTTATT
1 TTTACATGAAATTTATT
59209102 ATTATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (17 bp):
TTTACATGAAATTTATT
Found at i:59211431 original size:55 final size:55
Alignment explanation
Indices: 59211347--59211455 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 55
59211337 TATTCATTGA
* * * *
59211347 ATGATAAATTATCACTTTTAATTTGAATAGTGCTTATGAATAACTAATTTGCAAG
1 ATGATAAATCATCACTTTAAATTTGAATAGTGCTCATAAATAACTAATTTGCAAG
*
59211402 ATGATAAATCATCACTTTAAATTTGAATAGTGCTCATAAATAATTAATTTGCAA
1 ATGATAAATCATCACTTTAAATTTGAATAGTGCTCATAAATAACTAATTTGCAA
59211456 TCTATAATTT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.40, C:0.10, G:0.11, T:0.39
Consensus pattern (55 bp):
ATGATAAATCATCACTTTAAATTTGAATAGTGCTCATAAATAACTAATTTGCAAG
Found at i:59212272 original size:50 final size:51
Alignment explanation
Indices: 59212217--59212317 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
59212207 ACTAGTTTTA
59212217 TTTTATTGTA-TTTTTTTATCAAATTCTTGTCTTTTCACCAAAAAAATATT
1 TTTTATTGTATTTTTTTTATCAAATTCTTGTCTTTTCACCAAAAAAATATT
59212267 TTTTATTGTATTTTTTTTATCAAATTCTTGTCTTTTCACCAAAAAAATATT
1 TTTTATTGTATTTTTTTTATCAAATTCTTGTCTTTTCACCAAAAAAATATT
59212318 GTAAAGAAGA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
50 10 0.20
51 40 0.80
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.54
Consensus pattern (51 bp):
TTTTATTGTATTTTTTTTATCAAATTCTTGTCTTTTCACCAAAAAAATATT
Found at i:59212785 original size:41 final size:41
Alignment explanation
Indices: 59212728--59212811 Score: 168
Period size: 41 Copynumber: 2.0 Consensus size: 41
59212718 GGAAAAAATT
59212728 TAAGGAATATTTTGTATGAATATGACATGGATATGAATCAA
1 TAAGGAATATTTTGTATGAATATGACATGGATATGAATCAA
59212769 TAAGGAATATTTTGTATGAATATGACATGGATATGAATCAA
1 TAAGGAATATTTTGTATGAATATGACATGGATATGAATCAA
59212810 TA
1 TA
59212812 GATGGAGTCG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.42, C:0.05, G:0.19, T:0.35
Consensus pattern (41 bp):
TAAGGAATATTTTGTATGAATATGACATGGATATGAATCAA
Found at i:59216137 original size:154 final size:154
Alignment explanation
Indices: 59215866--59216200 Score: 562
Period size: 154 Copynumber: 2.2 Consensus size: 154
59215856 TTGGTTATGG
*
59215866 TCCTGCATATGTTGCGGACACACTACAACTCGAAAGAGCGTCCCGTTATTAGCTCTCATGAGCAT
1 TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCGTCCCGTTATTAGCTCTCATGAGCAT
* ** ** * *
59215931 TCTGATATTTTTCTCTCACGAGCTTCCTGTTATATGGTTCTTGTGAGCTTCCCATTAATAGCTCT
66 CCCAATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGCTTCCCATTAATAGCTCT
*
59215996 TCGGAGCATCCCGATTGGTTGTAA
131 TCGGAGCATCCCAATTGGTTGTAA
59216020 TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCGTCCCGTTATTAGCTCTCATGAGCAT
1 TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCGTCCCGTTATTAGCTCTCATGAGCAT
* *
59216085 CCCAATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGTTTCCCTTTAATAGCTCT
66 CCCAATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGCTTCCCATTAATAGCTCT
59216150 TCGGAGCATCCCAATTGGTTGTAA
131 TCGGAGCATCCCAATTGGTTGTAA
*
59216174 TCCTGCATGTGTTGCGGACACACCACA
1 TCCTGCATATGTTGCGGACACACCACA
59216201 GCTCTTATAA
Statistics
Matches: 169, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
154 169 1.00
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.32
Consensus pattern (154 bp):
TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCGTCCCGTTATTAGCTCTCATGAGCAT
CCCAATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGCTTCCCATTAATAGCTCT
TCGGAGCATCCCAATTGGTTGTAA
Found at i:59216247 original size:154 final size:154
Alignment explanation
Indices: 59215866--59216252 Score: 512
Period size: 154 Copynumber: 2.5 Consensus size: 154
59215856 TTGGTTATGG
* * * *
59215866 TCCTGCATATGTTGCGGACACACTACAACTCGAAAGAGCGTCCCGTTATTAGCTCTCATGAGCAT
1 TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCATCCCGATATTAGCTCTCAGGAGCAT
* * ** * *
59215931 TCTGATATTTTTCTCTCACGAGCTTCCTGTTATATGGTTCTTGTGAGCTTCCCATTAATAGCTCT
66 CCCGATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGCTTCCCATTAATAGCTCT
*
59215996 TCGGAGCATCCCGATTGGTTGTAA
131 TCGGAGCATCCCAATTGGTTGTAA
* * *
59216020 TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCGTCCCGTTATTAGCTCTCATGAGCAT
1 TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCATCCCGATATTAGCTCTCAGGAGCAT
* * *
59216085 CCCAATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGTTTCCCTTTAATAGCTCT
66 CCCGATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGCTTCCCATTAATAGCTCT
59216150 TCGGAGCATCCCAATTGGTTGTAA
131 TCGGAGCATCCCAATTGGTTGTAA
* * * * *
59216174 TCCTGCATGTGTTGCGGACACACCACAGCTCTTATA-AGCAT-CCGATATATGGCTCTTC-GGAG
1 TCCTGCATATGTTGCGGACACACCACAACTC-GAAAGAGCATCCCGATAT-TAGCTC-TCAGGAG
*
59216236 CTTCCCGATA-TTGGCTC
63 CATCCCGATATTTGGCTC
59216253 GCTTGAACTT
Statistics
Matches: 209, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
153 13 0.06
154 192 0.92
155 4 0.02
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.32
Consensus pattern (154 bp):
TCCTGCATATGTTGCGGACACACCACAACTCGAAAGAGCATCCCGATATTAGCTCTCAGGAGCAT
CCCGATATTTGGCTCTCACGAGCTTCCTATTATATGGTTCTTGCGAGCTTCCCATTAATAGCTCT
TCGGAGCATCCCAATTGGTTGTAA
Found at i:59218061 original size:43 final size:43
Alignment explanation
Indices: 59218013--59218112 Score: 148
Period size: 43 Copynumber: 2.3 Consensus size: 43
59218003 GATTAACGAG
*
59218013 ATGTGATTATGTGTAAGACCATGTCTG-GGACATTGGCATCATT
1 ATGTGATTACGTGTAAGACCATGTC-GAGGACATTGGCATCATT
*
59218056 ATGTGATTACGTGTAAGACCATGTCGAGGACATTGGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCGAGGACATTGGCATCATT
* *
59218099 ATTTGATTTCGTGT
1 ATGTGATTACGTGT
59218113 GAGATTATAG
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
42 1 0.02
43 51 0.98
ACGTcount: A:0.24, C:0.14, G:0.26, T:0.36
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCGAGGACATTGGCATCATT
Done.