Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 197 of 259
Found at i:62938467 original size:19 final size:18
Alignment explanation
Indices: 62938439--62938478 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
62938429 CACCATTTTG
62938439 TTTGCTAATCCATTTCCC
1 TTTGCTAATCCATTTCCC
*
62938457 TTTGTCTAATCCATTTTCC
1 TTTG-CTAATCCATTTCCC
62938476 TTT
1 TTT
62938479 TACGGGGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.15, C:0.28, G:0.05, T:0.53
Consensus pattern (18 bp):
TTTGCTAATCCATTTCCC
Found at i:62942307 original size:31 final size:31
Alignment explanation
Indices: 62942263--62942333 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
62942253 ATAGTCCCTA
** * *
62942263 AACTATTCGAAAGTT-TTCATTTAAGTTATTG
1 AACTATTAAAAAGTTGTT-ATTTAAATCATTG
62942294 AACTATTAAAAAGTTGTTATTTAAATCATTG
1 AACTATTAAAAAGTTGTTATTTAAATCATTG
*
62942325 AGCTATTAA
1 AACTATTAA
62942334 GTTTTTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 32 0.94
32 2 0.06
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.42
Consensus pattern (31 bp):
AACTATTAAAAAGTTGTTATTTAAATCATTG
Found at i:62943508 original size:42 final size:42
Alignment explanation
Indices: 62943447--62943532 Score: 120
Period size: 42 Copynumber: 2.0 Consensus size: 42
62943437 GCTAATCTTG
* *
62943447 CAACAAATTCTGGTGTTAGATTGTATCAA-CAGTCTTATTTGA
1 CAACAAATTCTGGTATTAGATTGTAT-AAGCAGTCTTATTCGA
* *
62943489 CAACAGATTCTGGTATTAGATTGTATAAGTAGTCTTATTCGA
1 CAACAAATTCTGGTATTAGATTGTATAAGCAGTCTTATTCGA
62943531 CA
1 CA
62943533 GTCGATTTAG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
41 2 0.05
42 37 0.95
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.37
Consensus pattern (42 bp):
CAACAAATTCTGGTATTAGATTGTATAAGCAGTCTTATTCGA
Found at i:62948055 original size:9 final size:9
Alignment explanation
Indices: 62948041--62948066 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
62948031 TGAAGATGGG
62948041 GCATGAAAT
1 GCATGAAAT
62948050 GCATGAAAT
1 GCATGAAAT
62948059 GCATGAAA
1 GCATGAAA
62948067 AGGAAACCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.12, G:0.23, T:0.19
Consensus pattern (9 bp):
GCATGAAAT
Found at i:62961094 original size:17 final size:17
Alignment explanation
Indices: 62961074--62961115 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
62961064 ATTTGTGGTG
62961074 AATTTGAAATTGTGATT
1 AATTTGAAATTGTGATT
**
62961091 AATTTGTTATTGTGATT
1 AATTTGAAATTGTGATT
*
62961108 GATTTGAA
1 AATTTGAA
62961116 TTCGAATGAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (17 bp):
AATTTGAAATTGTGATT
Found at i:62963212 original size:20 final size:18
Alignment explanation
Indices: 62963174--62963217 Score: 63
Period size: 20 Copynumber: 2.4 Consensus size: 18
62963164 AAACCCTAAT
62963174 TTTCCC-TTTTCTTTTTC
1 TTTCCCTTTTTCTTTTTC
62963191 TTTCCCTTTTTCCTTATTTC
1 TTTCCCTTTTT-CTT-TTTC
62963211 TTTCCCT
1 TTTCCCT
62963218 GCTCATTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 3 0.12
20 11 0.46
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTCCCTTTTTCTTTTTC
Found at i:62963245 original size:9 final size:9
Alignment explanation
Indices: 62963231--62963266 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
62963221 CATTCGTGCC
62963231 TTTCTTTTT
1 TTTCTTTTT
62963240 TTTCTTTTT
1 TTTCTTTTT
*
62963249 CTTTGTTTTT
1 -TTTCTTTTT
62963259 TTTCTTTT
1 TTTCTTTT
62963267 ATTCATTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (9 bp):
TTTCTTTTT
Found at i:62963257 original size:19 final size:19
Alignment explanation
Indices: 62963230--62963266 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
62963220 TCATTCGTGC
62963230 CTTTCTTTTTTTTCTTTTT
1 CTTTCTTTTTTTTCTTTTT
*
62963249 CTTTGTTTTTTTTCTTTT
1 CTTTCTTTTTTTTCTTTT
62963267 ATTCATTCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.03, T:0.84
Consensus pattern (19 bp):
CTTTCTTTTTTTTCTTTTT
Found at i:62972480 original size:11 final size:12
Alignment explanation
Indices: 62972469--62972508 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
62972459 AAATTCAGTT
62972469 TTGGTTTGG-T-
1 TTGGTTTGGTTA
62972479 TTGGTTTGGTTA
1 TTGGTTTGGTTA
*
62972491 TT-ATTTGGTTA
1 TTGGTTTGGTTA
62972502 TTGGTTT
1 TTGGTTT
62972509 TATTATAGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 9 0.36
11 11 0.44
12 5 0.20
ACGTcount: A:0.07, C:0.00, G:0.30, T:0.62
Consensus pattern (12 bp):
TTGGTTTGGTTA
Found at i:62973046 original size:5 final size:5
Alignment explanation
Indices: 62973036--62973062 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
62973026 CCACAATCAG
62973036 ACATC ACATC ACATC ACATC ACATC AC
1 ACATC ACATC ACATC ACATC ACATC AC
62973063 TACCCCTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (5 bp):
ACATC
Found at i:62976109 original size:31 final size:31
Alignment explanation
Indices: 62976048--62976109 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
62976038 TCAGTCATGA
*
62976048 AATTATTAATAATTTTATAATTTAGTCACTC
1 AATTATTAATAAATTTATAATTTAGTCACTC
62976079 AATTATTAATAAATTTATAATTTAGTCACTC
1 AATTATTAATAAATTTATAATTTAGTCACTC
62976110 TCAACATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (31 bp):
AATTATTAATAAATTTATAATTTAGTCACTC
Found at i:62976507 original size:40 final size:40
Alignment explanation
Indices: 62976452--62976535 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
62976442 AAAAATAACA
62976452 TGGCATATGACAGCGTACTTGGTGTCATTAATCATCCAGT
1 TGGCATATGACAGCGTACTTGGTGTCATTAATCATCCAGT
62976492 TGGCATATGACAGCGTACTTGGTGTCATTAATCATCCAGT
1 TGGCATATGACAGCGTACTTGGTGTCATTAATCATCCAGT
62976532 TGGC
1 TGGC
62976536 CGATTAGCAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (40 bp):
TGGCATATGACAGCGTACTTGGTGTCATTAATCATCCAGT
Found at i:62981169 original size:12 final size:10
Alignment explanation
Indices: 62981136--62981187 Score: 61
Period size: 10 Copynumber: 5.3 Consensus size: 10
62981126 ATCTTAATTC
62981136 TAAAAAAAT-
1 TAAAAAAATA
62981145 TAAAAAAATA
1 TAAAAAAATA
62981155 TAAAAAAATA
1 TAAAAAAATA
* * * *
62981165 CATAAATATT
1 TAAAAAAATA
62981175 TAAAAAAATA
1 TAAAAAAATA
62981185 TAA
1 TAA
62981188 TAAATTTTTA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
9 9 0.26
10 25 0.74
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (10 bp):
TAAAAAAATA
Found at i:62981180 original size:21 final size:21
Alignment explanation
Indices: 62981136--62981202 Score: 77
Period size: 20 Copynumber: 3.3 Consensus size: 21
62981126 ATCTTAATTC
* *
62981136 TAAAAAAAT-TAA-AAAAATA
1 TAAAAAAATATAATAAATATT
*
62981155 TAAAAAAATA-CATAAATATT
1 TAAAAAAATATAATAAATATT
*
62981175 TAAAAAAATATAATAAATTTT
1 TAAAAAAATATAATAAATATT
62981196 TAAAAAA
1 TAAAAAA
62981203 TGTAAAATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
19 10 0.25
20 15 0.38
21 15 0.38
ACGTcount: A:0.70, C:0.01, G:0.00, T:0.28
Consensus pattern (21 bp):
TAAAAAAATATAATAAATATT
Found at i:62981211 original size:22 final size:21
Alignment explanation
Indices: 62981136--62981213 Score: 74
Period size: 21 Copynumber: 3.8 Consensus size: 21
62981126 ATCTTAATTC
62981136 TAAAAAAATTAAAA-AAATA--
1 TAAAAAAA-TAAAATAAATATT
*
62981155 TAAAAAAAT-ACATAAATATT
1 TAAAAAAATAAAATAAATATT
* *
62981175 TAAAAAAATATAATAAATTTT
1 TAAAAAAATAAAATAAATATT
*
62981196 TAAAAAATGTAAAATAAA
1 TAAAAAA-ATAAAATAAA
62981214 AAATGATTTA
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
17 2 0.04
18 6 0.12
19 8 0.17
20 9 0.19
21 15 0.31
22 8 0.17
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (21 bp):
TAAAAAAATAAAATAAATATT
Found at i:62981250 original size:25 final size:24
Alignment explanation
Indices: 62981221--62981269 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
62981211 AAAAAATGAT
*
62981221 TTATATTAATATTAAATATAAATAA
1 TTATATTAATATCAAATA-AAATAA
62981246 TTATATTAATATCAAATAAAATAA
1 TTATATTAATATCAAATAAAATAA
62981270 AAATACCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (24 bp):
TTATATTAATATCAAATAAAATAA
Found at i:62986005 original size:18 final size:18
Alignment explanation
Indices: 62985982--62986018 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
62985972 TAATTCTTCT
*
62985982 AATGAATTAGAAACTTAA
1 AATGAATTAAAAACTTAA
62986000 AATGAATTAAAAACTTAA
1 AATGAATTAAAAACTTAA
62986018 A
1 A
62986019 CTACCCCTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.27
Consensus pattern (18 bp):
AATGAATTAAAAACTTAA
Found at i:62989111 original size:20 final size:20
Alignment explanation
Indices: 62989083--62989120 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
62989073 TTCCGTTTAG
62989083 CTCACATGAGCTTCAGTTAA
1 CTCACATGAGCTTCAGTTAA
* *
62989103 CTCATATGAGTTTCAGTT
1 CTCACATGAGCTTCAGTT
62989121 TAACACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (20 bp):
CTCACATGAGCTTCAGTTAA
Found at i:62989787 original size:21 final size:20
Alignment explanation
Indices: 62989763--62989802 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
62989753 TATGAGCTTT
*
62989763 AATGATTGATGGTAGATTATG
1 AATGATTGATGATAG-TTATG
*
62989784 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
62989803 ACAAGTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:62995144 original size:26 final size:26
Alignment explanation
Indices: 62995108--62995191 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
62995098 CATGAAATTC
62995108 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
62995134 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
62995160 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
62995186 TTATCA
1 TTATCA
62995192 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:63001779 original size:31 final size:31
Alignment explanation
Indices: 63001741--63001800 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
63001731 TTGTGACACT
63001741 TATCAAAAACCTTCTAACTATTTTCAGGGCA
1 TATCAAAAACCTTCTAACTATTTTCAGGGCA
*
63001772 TATCAAAAGCCTTCTAACTATTTTCAGGG
1 TATCAAAAACCTTCTAACTATTTTCAGGG
63001801 TATTTTTGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (31 bp):
TATCAAAAACCTTCTAACTATTTTCAGGGCA
Found at i:63016661 original size:21 final size:22
Alignment explanation
Indices: 63016635--63016675 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
63016625 TTAATAAAAT
*
63016635 TGAATCAATA-AATTAAAATTA
1 TGAATCAATAGAATAAAAATTA
63016656 TGAATCAATAGAATAAAAAT
1 TGAATCAATAGAATAAAAAT
63016676 AACATCACCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (22 bp):
TGAATCAATAGAATAAAAATTA
Found at i:63018433 original size:25 final size:26
Alignment explanation
Indices: 63018393--63018444 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
63018383 TTTACAAAAG
*
63018393 TTATTTTTACACAATAATAAAATATT
1 TTATTTTTACAAAATAATAAAATATT
* *
63018419 TTATTTTTA-AAAATAATTATATATT
1 TTATTTTTACAAAATAATAAAATATT
63018444 T
1 T
63018445 ATTATTGAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (26 bp):
TTATTTTTACAAAATAATAAAATATT
Found at i:63019835 original size:16 final size:17
Alignment explanation
Indices: 63019811--63019843 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
63019801 CTAGGTCTTC
63019811 TTTTGTGGTTTT-TTTT
1 TTTTGTGGTTTTGTTTT
*
63019827 TTTTTTGGTTTTGTTTT
1 TTTTGTGGTTTTGTTTT
63019844 GTTTCTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.00, C:0.00, G:0.18, T:0.82
Consensus pattern (17 bp):
TTTTGTGGTTTTGTTTT
Found at i:63019854 original size:2 final size:2
Alignment explanation
Indices: 63019847--63019871 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
63019837 TTGTTTTGTT
63019847 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
63019872 GAATGTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:63020260 original size:25 final size:25
Alignment explanation
Indices: 63020242--63020289 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
63020232 TTAATTAATT
*
63020242 TAATTGATTTTAATATTAAAGAAGA
1 TAATTGATTTTAACATTAAAGAAGA
63020267 TAATTGATTTTAACATTAAAGAA
1 TAATTGATTTTAACATTAAAGAA
63020290 AAGTTTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (25 bp):
TAATTGATTTTAACATTAAAGAAGA
Found at i:63023061 original size:3 final size:3
Alignment explanation
Indices: 63023048--63023119 Score: 135
Period size: 3 Copynumber: 23.7 Consensus size: 3
63023038 GTCCCTTCTT
63023048 TAC TCAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
1 TAC T-AC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC TAC
63023094 TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TA
63023120 TTGTTATTAT
Statistics
Matches: 68, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
3 65 0.96
4 3 0.04
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
TAC
Found at i:63026453 original size:27 final size:29
Alignment explanation
Indices: 63026406--63026462 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 29
63026396 TTAATTTAGC
* *
63026406 ATTATTTACTATTATTATTGTTAT-TTTT
1 ATTATTTACTACTATTATTGTCATCTTTT
*
63026434 ATTA-TTACTACTATTTTTGTCATCTTTT
1 ATTATTTACTACTATTATTGTCATCTTTT
63026462 A
1 A
63026463 AACTGTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.25, C:0.09, G:0.04, T:0.63
Consensus pattern (29 bp):
ATTATTTACTACTATTATTGTCATCTTTT
Found at i:63047773 original size:27 final size:26
Alignment explanation
Indices: 63047738--63047849 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
63047728 AGCATGGCTG
* *
63047738 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
63047764 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
63047792 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
63047819 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
63047846 CCAG
1 CCAG
63047850 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 6 0.08
27 52 0.70
28 16 0.22
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:63047803 original size:54 final size:54
Alignment explanation
Indices: 63047738--63047849 Score: 154
Period size: 54 Copynumber: 2.1 Consensus size: 54
63047728 AGCATGGCTG
*
63047738 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAACCA
* * * * *
63047792 CCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
63047846 CCAG
1 CCAG
63047850 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAACCA
Found at i:63053380 original size:130 final size:129
Alignment explanation
Indices: 63053169--63053630 Score: 511
Period size: 130 Copynumber: 3.6 Consensus size: 129
63053159 TAATTATTTA
* ** ** * * * *
63053169 TTTAAAATTCTTTAAAACGAAGGCAATGTTTGATATTTGGCAATTCGCGGAATCGTGCCTTATCG
1 TTTAAAATTCTTCAAAAC-AAGATAATGTTCAATGTTTGGAAATTCG-AGAATCGTGCCCTATCG
* * * *
63053234 TGCTGGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCACTCATGTT
64 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTT
63053299 T
129 T
* *
63053300 TTTAAAATTCTTCAAAATAAAGATAATGTTCAATGTTTGGCAATTCGAGAATCGTGCCCTATCGT
1 TTTAAAATTCTTCAAAA-CAAGATAATGTTCAATGTTTGGAAATTCGAGAATCGTGCCCTATCGT
* * *
63053365 GCTGGGTTGCGATTTCTCGTTTGTTCAAAACAATCAAATATTCCTTTGGAATTTCACTCAT-TTC
65 GCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTT-
63053429 T
129 T
* * * * * *
63053430 TTAAAAATTCTTCAAAACGAGCATAATATTCGATGTTTGGAAATTCGGGGAATCATGCCCTATCG
1 TTTAAAATTCTTCAAAACAAG-ATAATGTTCAATGTTTGGAAATTC-GAGAATCGTGCCCTATCG
* *
63053495 TGCTGGGTTGCAATTTCCCGTTTGTTTAAAATAATCGAATATTCCTTTGGAA-TTCTACTCATGT
64 TGCTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTC-ACTCATGT
63053559 TT
128 TT
* * * ** * * *
63053561 TCT-AAATGC-T-AAAGCAAGGCAATGTTCAATGTTTAGAAATTTGAGGAATCGTGCCCTACCGT
1 TTTAAAATTCTTCAAAACAAGATAATGTTCAATGTTTGGAAATTCGA-GAATCGTGCCCTATCGT
63053623 GCTGGGTT
65 GCTGGGTT
63053631 TCGATTTTTC
Statistics
Matches: 281, Mismatches: 43, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
126 1 0.00
127 41 0.15
128 6 0.02
129 5 0.02
130 116 0.41
131 110 0.39
132 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37
Consensus pattern (129 bp):
TTTAAAATTCTTCAAAACAAGATAATGTTCAATGTTTGGAAATTCGAGAATCGTGCCCTATCGTG
CTGGGTTGCAATTTCTCGTTTGTTCAAAATAATCGAATATTCCTTTGGAATTTCACTCATGTTT
Found at i:63056211 original size:31 final size:31
Alignment explanation
Indices: 63056176--63056246 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
63056166 GTAATTAATT
* *
63056176 ATTTTTAAAAATTAGAAATTATTTTTTTATA
1 ATTTTTAAAAATTACAAATAATTTTTTTATA
* ** * *
63056207 ATTTTTATACTTTTCAAATAATTTTTTTTTA
1 ATTTTTAAAAATTACAAATAATTTTTTTATA
63056238 ATTTTTAAA
1 ATTTTTAAA
63056247 TACTAAAAGT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.59
Consensus pattern (31 bp):
ATTTTTAAAAATTACAAATAATTTTTTTATA
Found at i:63057710 original size:13 final size:13
Alignment explanation
Indices: 63057692--63057749 Score: 71
Period size: 13 Copynumber: 4.5 Consensus size: 13
63057682 AGTTCTTCAT
*
63057692 TGCTTTTGAAAAG
1 TGCTTTTGAGAAG
63057705 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* * *
63057718 TTCTATGGAGAAG
1 TGCTTTTGAGAAG
*
63057731 TACTTTTGAGAAG
1 TGCTTTTGAGAAG
63057744 TGCTTT
1 TGCTTT
63057750 AAAAAAATTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:63061434 original size:24 final size:24
Alignment explanation
Indices: 63061397--63061459 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
63061387 TCATGTACAC
*
63061397 ATTATT-TATATTATTTTCA-TGATT
1 ATTATTGTAT-TTATTTTCACT-ACT
* *
63061421 ATTATTGTGTTTATTTTTACTACT
1 ATTATTGTATTTATTTTCACTACT
63061445 ATTATTGTATTTATT
1 ATTATTGTATTTATT
63061460 ATTAGTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.63
Consensus pattern (24 bp):
ATTATTGTATTTATTTTCACTACT
Found at i:63061474 original size:24 final size:24
Alignment explanation
Indices: 63061418--63061474 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
63061408 TATTTTCATG
* *
63061418 ATTATTATTGTGTTTATTTTTACT
1 ATTATTATTGTATTTATTATTACT
* *
63061442 ACTATTATTGTATTTATTATTAGT
1 ATTATTATTGTATTTATTATTACT
*
63061466 ATTAGTATT
1 ATTATTATT
63061475 ATAATTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTATTATTGTATTTATTATTACT
Found at i:63061722 original size:24 final size:23
Alignment explanation
Indices: 63061682--63061741 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 23
63061672 TTTTTAATAC
63061682 TATATTATGTATATATTATATTA
1 TATATTATGTATATATTATATTA
*
63061705 TATATATATGTATTTATTATA-T-
1 TATAT-TATGTATATATTATATTA
63061727 T-T-TTATGTATATATT
1 TATATTATGTATATATT
63061742 TTTAATATCA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 11 0.32
20 1 0.03
21 1 0.03
22 1 0.03
23 6 0.18
24 14 0.41
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (23 bp):
TATATTATGTATATATTATATTA
Found at i:63074357 original size:43 final size:44
Alignment explanation
Indices: 63074254--63074680 Score: 542
Period size: 43 Copynumber: 10.2 Consensus size: 44
63074244 TCCTTGAAAC
*
63074254 AGATAACAGATTTGGCAT-TCTGTAGCGGCGGA-AGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
63074296 AGAT----GATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
63074336 AGATAACA-ATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
63074379 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
63074423 AGATAACA-ATTT-GCGTCTCTGTAGC-GCGG-GAGCAGATC-A
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
63074462 AGAT----GATTTGGC-TCTCTGTAGCGG-GGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
63074500 AGATAACAGATTTGGCGTCTCT-TAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
** * *
63074543 AGAT----GATTTGGCGTCTCTGTAGTAGTGGAGAGCAGATCAA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
63074583 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG-
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* ** * *
63074626 AGGTAACAGATTTGGTATCTCTATAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
63074670 AAATAACAGAT
1 AGATAACAGAT
63074681 CGGTGTTCCT
Statistics
Matches: 341, Mismatches: 20, Indels: 46
0.84 0.05 0.11
Matches are distributed among these distances:
36 16 0.05
37 12 0.04
38 15 0.04
39 32 0.09
40 44 0.13
41 3 0.01
42 31 0.09
43 106 0.31
44 82 0.24
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.22
Consensus pattern (44 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
Found at i:63074612 original size:204 final size:202
Alignment explanation
Indices: 63074262--63074639 Score: 541
Period size: 204 Copynumber: 1.9 Consensus size: 202
63074252 ACAGATAACA
*
63074262 GATTTGGCATTCTGTAGCGGCGGAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGTGGAGA
1 GATTTGGCATTCTGTAGCGGCGGAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGA
* *
63074327 GCAGATCGAAGATAACAATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTT
66 GCAGATCGAAGAT-A-AATTTGGCATCTCTGTAGCAGCAGAGAGCAGATCAAAGATAACAGATTT
63074392 GGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACA-ATTTGCGTCTCTGTAGCGCGGGAGC
129 GGCGTCTCTGTAGCGGCAGAGAGCAGATCG-AGATAACAGATTTGCGTCTCTGTAGCGCGGGAGC
63074456 AGATCAAGAT
193 AGATCAAGAT
*
63074466 GATTTGGC-TCTCTGTAGCGG-GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCT-TAGCGG
1 GATTTGGCAT-TCTGTAGCGGCGGA-AGCAGATCGAAGAT----GATTTGGCATCTCTGTAGCGG
* * * **
63074528 CGGAGAGCAGATCGAAGAT-GATTTGGCGTCTCTGTAGTAGTGGAGAGCAGATCAAAGATAACAG
60 CGGAGAGCAGATCGAAGATAAATTTGGCATCTCTGTAGCAGCAGAGAGCAGATCAAAGATAACAG
* *
63074592 ATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAGGTAACAGATTTG
125 ATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAGATAACAGATTTG
63074640 GTATCTCTAT
Statistics
Matches: 156, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
203 11 0.07
204 108 0.69
207 24 0.15
208 13 0.08
ACGTcount: A:0.28, C:0.17, G:0.33, T:0.23
Consensus pattern (202 bp):
GATTTGGCATTCTGTAGCGGCGGAAGCAGATCGAAGATGATTTGGCATCTCTGTAGCGGCGGAGA
GCAGATCGAAGATAAATTTGGCATCTCTGTAGCAGCAGAGAGCAGATCAAAGATAACAGATTTGG
CGTCTCTGTAGCGGCAGAGAGCAGATCGAGATAACAGATTTGCGTCTCTGTAGCGCGGGAGCAGA
TCAAGAT
Found at i:63076150 original size:24 final size:24
Alignment explanation
Indices: 63076094--63076150 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
63076084 TATTTTCATG
* *
63076094 ATTATTATTGTGTTTATTTTTACT
1 ATTATTATTGTATTTATTATTACT
* *
63076118 ACTATTATTGTATTTATTATTAGT
1 ATTATTATTGTATTTATTATTACT
*
63076142 ATTAGTATT
1 ATTATTATT
63076151 ATAATTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTATTATTGTATTTATTATTACT
Found at i:63076374 original size:34 final size:34
Alignment explanation
Indices: 63076327--63076404 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
63076317 ATTATTTCTA
* * *
63076327 ATGTGTATGTATTATATATTTTTAATACTA-TATT
1 ATGTATATATATTATATATATTTAATA-TATTATT
* *
63076361 ATGTATATATATTATATATATTTATTATATTTTT
1 ATGTATATATATTATATATATTTAATATATTATT
63076395 ATGTATATAT
1 ATGTATATAT
63076405 TTTTAATATC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
33 2 0.05
34 36 0.95
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.58
Consensus pattern (34 bp):
ATGTATATATATTATATATATTTAATATATTATT
Found at i:63076407 original size:13 final size:12
Alignment explanation
Indices: 63076336--63076407 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 12
63076326 AATGTGTATG
63076336 TATTATATATTT
1 TATTATATATTT
* *
63076348 T-TAATACTATAT
1 TATTATA-TATTT
*
63076360 TATGTATATATAT
1 TAT-TATATATTT
63076373 TA-TATATA-TT
1 TATTATATATTT
63076383 TATTATAT-TTT
1 TATTATATATTT
63076394 TATGTATATATTT
1 TAT-TATATATTT
63076407 T
1 T
63076408 TAATATCACA
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
10 3 0.06
11 20 0.41
12 11 0.22
13 12 0.24
14 3 0.06
ACGTcount: A:0.35, C:0.01, G:0.03, T:0.61
Consensus pattern (12 bp):
TATTATATATTT
Found at i:63076577 original size:3 final size:3
Alignment explanation
Indices: 63076569--63076625 Score: 73
Period size: 3 Copynumber: 19.0 Consensus size: 3
63076559 TTTATTCATA
*
63076569 TAT TAT TAT CAT TAT T-T CTACT TA- TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TAT TAT TAT TAT TAT
63076614 TAT TAT TAT TAT
1 TAT TAT TAT TAT
63076626 CATTGTCATT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
2 3 0.06
3 42 0.88
4 2 0.04
5 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:63095941 original size:44 final size:44
Alignment explanation
Indices: 63095833--63096271 Score: 551
Period size: 44 Copynumber: 10.2 Consensus size: 44
63095823 TCCTTGAAAC
* * *
63095833 AGATAACAGATTTGGCATTTCTGTAGCGGCGGAAAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
63095877 AGAT----GATTTGGCATCTCTGTAGCGGTGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * *
63095917 AGATAACATATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
63095961 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * * *
63096005 AGATAACAAATTTGGCGTCTCTGTAGCAGCGGGGAGCAGATCAA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
63096049 AGAT----GATTTGGCATCTCTGTAGCGGGGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
63096089 AGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
** * *
63096133 AGAT----GATTTGGCGTCTCTGTAGTAGTGGAGAGCAGATCAA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
63096173 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGT
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* ** * *
63096217 AGGTAACAGATTTGGTATCTCTATAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
63096261 AAATAACAGAT
1 AGATAACAGAT
63096272 CGGTGTTCCT
Statistics
Matches: 343, Mismatches: 40, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
40 106 0.31
44 237 0.69
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (44 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
Found at i:63096061 original size:128 final size:125
Alignment explanation
Indices: 63095833--63096261 Score: 563
Period size: 128 Copynumber: 3.4 Consensus size: 125
63095823 TCCTTGAAAC
* * * * *
63095833 AGATAACAGATTTGGCATTTCTGTAGCGGCGGAAAGCAGATCGAAGATGATTTGGCATCTCTGTA
1 AGATAACAGATTTGGCATCTCTATAGCGGCAGAGAGCAGATCGAAGATGATTTGGCGTCTCTGTA
* * * *
63095898 GCGGTGGAGAGCAGATCGAAGATAACATATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGA
66 GCAGTGGAGAGCAGATCAAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
* * *
63095961 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAAATTTGGCGTCTC
1 AGATAACAGATTTGGCATCTCTATAGCGGCAGAGAGCAGATCGAAGAT----GATTTGGCGTCTC
* * *
63096026 TGTAGCAGCGGGGAGCAGATCAAAGAT-GATTTGGCATCTCTGTAGCGGGGGAGAGCAGATCGA
62 TGTAGCAGTGGAGAGCAGATCAAAGATAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
* *
63096089 AGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATGATTTGGCGTCTCTGTA
1 AGATAACAGATTTGGCATCTCTATAGCGGCAGAGAGCAGATCGAAGATGATTTGGCGTCTCTGTA
* * *
63096154 GTAGTGGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGT
66 GCAGTGGAGAGCAGATCAAAGAT---AGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
* *
63096217 AGGTAACAGATTTGGTATCTCTATAGCGGCAGAGAGCAGATCGAA
1 AGATAACAGATTTGGCATCTCTATAGCGGCAGAGAGCAGATCGAA
63096262 AATAACAGAT
Statistics
Matches: 267, Mismatches: 26, Indels: 16
0.86 0.08 0.05
Matches are distributed among these distances:
124 36 0.13
128 197 0.74
132 34 0.13
ACGTcount: A:0.29, C:0.17, G:0.32, T:0.23
Consensus pattern (125 bp):
AGATAACAGATTTGGCATCTCTATAGCGGCAGAGAGCAGATCGAAGATGATTTGGCGTCTCTGTA
GCAGTGGAGAGCAGATCAAAGATAGATTTGGCATCTCTGTAGCGGCGGAGAGCAGATCGA
Found at i:63096102 original size:84 final size:84
Alignment explanation
Indices: 63095833--63096271 Score: 572
Period size: 84 Copynumber: 5.1 Consensus size: 84
63095823 TCCTTGAAAC
* * *
63095833 AGATAACAGATTTGGCATTTCTGTAGCGGCGGAAAGCAGATCGAAGATGATTTGGCATCTCTGTA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTA
*
63095898 GCGGTGGAGAGCAGATCGA
66 GCGGCGGAGAGCAGATCGA
* * * *
63095917 AGATAACATATTTGGCATCTCTGTAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTC
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGAT----GATTTGGCATCTC
*
63095982 TGTAGCGGCAGAGAGCAGATCGA
62 TGTAGCGGCGGAGAGCAGATCGA
* * * *
63096005 AGATAACAAATTTGGCGTCTCTGTAGCAGCGGGGAGCAGATCAAAGATGATTTGGCATCTCTGTA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTA
*
63096070 GCGGGGGAGAGCAGATCGA
66 GCGGCGGAGAGCAGATCGA
* *
63096089 AGATAACAGATTTGGCGTCTCTATAGCGGCGGAGAGCAGATCGAAGATGATTTGGCGTCTCTGTA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTA
** * *
63096154 GTAGTGGAGAGCAGATCAA
66 GCGGCGGAGAGCAGATCGA
* * *
63096173 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGTAGGTAACAGATTTGGTATCTC
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCG-AAG--A-TGATTTGGCATCTC
* *
63096238 TATAGCGGCAGAGAGCAGATCGA
62 TGTAGCGGCGGAGAGCAGATCGA
*
63096261 AAATAACAGAT
1 AGATAACAGAT
63096272 CGGTGTTCCT
Statistics
Matches: 309, Mismatches: 38, Indels: 12
0.86 0.11 0.03
Matches are distributed among these distances:
84 193 0.62
85 2 0.01
87 1 0.00
88 113 0.37
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.23
Consensus pattern (84 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGAAGATGATTTGGCATCTCTGTA
GCGGCGGAGAGCAGATCGA
Found at i:63097753 original size:24 final size:24
Alignment explanation
Indices: 63097716--63097778 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
63097706 TCATGTACAC
*
63097716 ATTATT-TATATTATTTTCA-TGATT
1 ATTATTGTAT-TTATTTTCACT-ACT
* *
63097740 ATTATTGTGTTTATTTTTACTACT
1 ATTATTGTATTTATTTTCACTACT
63097764 ATTATTGTATTTATT
1 ATTATTGTATTTATT
63097779 ATTAGTATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 30 0.91
25 3 0.09
ACGTcount: A:0.25, C:0.05, G:0.06, T:0.63
Consensus pattern (24 bp):
ATTATTGTATTTATTTTCACTACT
Found at i:63097793 original size:24 final size:24
Alignment explanation
Indices: 63097737--63097793 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
63097727 TATTTTCATG
* *
63097737 ATTATTATTGTGTTTATTTTTACT
1 ATTATTATTGTATTTATTATTACT
* *
63097761 ACTATTATTGTATTTATTATTAGT
1 ATTATTATTGTATTTATTATTACT
*
63097785 ATTAGTATT
1 ATTATTATT
63097794 ATAATTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.26, C:0.04, G:0.09, T:0.61
Consensus pattern (24 bp):
ATTATTATTGTATTTATTATTACT
Found at i:63098057 original size:19 final size:21
Alignment explanation
Indices: 63097983--63098047 Score: 71
Period size: 21 Copynumber: 3.0 Consensus size: 21
63097973 GTGTATGTAT
*
63097983 TATATATAT-T-TTTAATACTA
1 TATATATATGTATTTATTA-TA
*
63098003 TATTATGTATGTATTATATTATA
1 TA-TATATATGTATT-TATTATA
63098026 TATATATATGTATTTATTATA
1 TATATATATGTATTTATTATA
63098047 T
1 T
63098048 TTTTATGTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
20 2 0.05
21 14 0.37
22 12 0.32
23 6 0.16
24 4 0.11
ACGTcount: A:0.37, C:0.02, G:0.05, T:0.57
Consensus pattern (21 bp):
TATATATATGTATTTATTATA
Found at i:63098062 original size:14 final size:14
Alignment explanation
Indices: 63097983--63098070 Score: 60
Period size: 14 Copynumber: 6.4 Consensus size: 14
63097973 GTGTATGTAT
63097983 TATATATATTTTTA
1 TATATATATTTTTA
*
63097997 -ATACTATATTATGTA
1 TATA-TATATT-TTTA
* *
63098012 TGTAT-TATATTATA
1 TATATATAT-TTTTA
*
63098026 TATATATATGTATT-
1 TATATATAT-TTTTA
63098040 TAT-TATATTTTTA
1 TATATATATTTTTA
*
63098053 TGTATATATTTTTA
1 TATATATATTTTTA
63098067 -ATAT
1 TATAT
63098071 CACATTATTC
Statistics
Matches: 57, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
12 3 0.05
13 13 0.23
14 29 0.51
15 10 0.18
16 2 0.04
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (14 bp):
TATATATATTTTTA
Found at i:63098062 original size:19 final size:21
Alignment explanation
Indices: 63097974--63098062 Score: 73
Period size: 19 Copynumber: 4.5 Consensus size: 21
63097964 ATTTCTAATG
*
63097974 TGTATGTATTATATATAT-T-
1 TGTATATATTATATATATATA
* * *
63097993 TTTA-ATACTATAT-TATGTA
1 TGTATATATTATATATATATA
63098012 TGTATTATATTATATATATATA
1 TGTA-TATATTATATATATATA
* *
63098034 TGTATTTATTATAT-T-TTTA
1 TGTATATATTATATATATATA
63098053 TGTATATATT
1 TGTATATATT
63098063 TTTAATATCA
Statistics
Matches: 56, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
17 3 0.05
18 8 0.14
19 18 0.32
20 1 0.02
21 17 0.30
22 9 0.16
ACGTcount: A:0.34, C:0.01, G:0.07, T:0.58
Consensus pattern (21 bp):
TGTATATATTATATATATATA
Found at i:63098070 original size:23 final size:23
Alignment explanation
Indices: 63097985--63098070 Score: 59
Period size: 23 Copynumber: 3.7 Consensus size: 23
63097975 GTATGTATTA
*
63097985 TATATATTTTTAATACTATATTATG
1 TATATATTTTTAATA-T-TTTTATG
* * * * * *
63098010 TATGTA-TTATATTATATATATA
1 TATATATTTTTAATATTTTTATG
*
63098032 TATGTATTTATT-ATATTTTTATG
1 TATATATTT-TTAATATTTTTATG
63098055 TATATATTTTTAATAT
1 TATATATTTTTAATAT
63098071 CACATTATTC
Statistics
Matches: 45, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
22 11 0.24
23 22 0.49
24 7 0.16
25 5 0.11
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (23 bp):
TATATATTTTTAATATTTTTATG
Found at i:63098248 original size:3 final size:3
Alignment explanation
Indices: 63098242--63098312 Score: 72
Period size: 3 Copynumber: 23.0 Consensus size: 3
63098232 TTTATTCATA
* *
63098242 TAT TAT TAT CAT TAT TTT CTACGT TAT -AT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT -TA--T TAT TAT TAT TAT TAT TAT TAT TAT
* *
63098289 CAT TAT TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
63098313 CGTTTTCATT
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
2 2 0.04
3 50 0.89
4 1 0.02
5 2 0.04
6 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:63101225 original size:3 final size:3
Alignment explanation
Indices: 63101219--63101304 Score: 50
Period size: 3 Copynumber: 28.7 Consensus size: 3
63101209 CTTATATCTT
* * * * *
63101219 TAA TAA TAA TAA TAA TAC TTA TAA TATT TAA TAA TCA T-A CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA
* * * * *
63101264 TAA TAC TTA TAA TATT TAA TAA TAA T-A CAA TAA TAA AAA TA
1 TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TA
63101305 TGTTTAACAA
Statistics
Matches: 60, Mismatches: 19, Indels: 8
0.69 0.22 0.09
Matches are distributed among these distances:
2 2 0.03
3 54 0.90
4 4 0.07
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:63101263 original size:33 final size:32
Alignment explanation
Indices: 63101199--63101299 Score: 140
Period size: 33 Copynumber: 3.2 Consensus size: 32
63101189 TATGTTGAAT
*
63101199 AATAATAATACTTAT-ATCTTTAAT-A-AT--
1 AATAATAATACTTATAATATTTAATAATATAC
63101226 AATAATAATACTTATAATATTTAATAATCATAC
1 AATAATAATACTTATAATATTTAATAAT-ATAC
63101259 AATAATAATACTTATAATATTTAATAATAATAC
1 AATAATAATACTTATAATATTTAATAAT-ATAC
63101292 AATAATAA
1 AATAATAA
63101300 AAATATGTTT
Statistics
Matches: 66, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
27 15 0.23
28 8 0.12
29 1 0.02
31 2 0.03
33 40 0.61
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (32 bp):
AATAATAATACTTATAATATTTAATAATATAC
Found at i:63101264 original size:11 final size:11
Alignment explanation
Indices: 63101226--63101299 Score: 53
Period size: 11 Copynumber: 6.7 Consensus size: 11
63101216 CTTTAATAAT
63101226 AATAATAATAC
1 AATAATAATAC
* **
63101237 TTATAAT-ATTT
1 -AATAATAATAC
*
63101248 AATAATCATAC
1 AATAATAATAC
63101259 AATAATAATAC
1 AATAATAATAC
* **
63101270 TTATAAT-ATTT
1 -AATAATAATAC
63101281 AATAATAATAC
1 AATAATAATAC
63101292 AATAATAA
1 AATAATAA
63101300 AAATATGTTT
Statistics
Matches: 46, Mismatches: 13, Indels: 7
0.70 0.20 0.11
Matches are distributed among these distances:
10 10 0.22
11 26 0.57
12 10 0.22
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATAATAATAC
Found at i:63103282 original size:48 final size:48
Alignment explanation
Indices: 63103230--63103380 Score: 162
Period size: 48 Copynumber: 3.2 Consensus size: 48
63103220 TCAGTAAAAT
*
63103230 TCAAAATCAGAGCCACGCGTCACGTATAAAACCGTGATTCAGTGAGAA
1 TCAAAATCAGAGCCACGCGTCACTTATAAAACCGTGATTCAGTGAGAA
* ** * * * * * * *
63103278 TCAAAATCAAAGTTA--TGTCACTTATGAAACTGTTATTCAATAAAAA
1 TCAAAATCAGAGCCACGCGTCACTTATAAAACCGTGATTCAGTGAGAA
* * *
63103324 TCGAAATCAGAGCCACGCGTCACTTACAAAATCGTGATTCAGTGAGAA
1 TCAAAATCAGAGCCACGCGTCACTTATAAAACCGTGATTCAGTGAGAA
63103372 TCAAAATCA
1 TCAAAATCA
63103381 AAACCACTCA
Statistics
Matches: 76, Mismatches: 25, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
46 34 0.45
48 42 0.55
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (48 bp):
TCAAAATCAGAGCCACGCGTCACTTATAAAACCGTGATTCAGTGAGAA
Found at i:63103367 original size:94 final size:94
Alignment explanation
Indices: 63103206--63103382 Score: 273
Period size: 94 Copynumber: 1.9 Consensus size: 94
63103196 ATACACCAAG
* * *
63103206 TATGAAACCGTCACTCAGTAAAATTCAAAATCAGAGCCACGCGTCACGTATAAAACCGTGATTCA
1 TATGAAACCGTCACTCAATAAAAATCAAAATCAGAGCCACGCGTCACGTACAAAACCGTGATTCA
63103271 GTGAGAATCAAAATCAAAGTTATGTCACT
66 GTGAGAATCAAAATCAAAGTTATGTCACT
* * * * * *
63103300 TATGAAACTGTTATTCAATAAAAATCGAAATCAGAGCCACGCGTCACTTACAAAATCGTGATTCA
1 TATGAAACCGTCACTCAATAAAAATCAAAATCAGAGCCACGCGTCACGTACAAAACCGTGATTCA
63103365 GTGAGAATCAAAATCAAA
66 GTGAGAATCAAAATCAAA
63103383 ACCACTCACT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
94 74 1.00
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.24
Consensus pattern (94 bp):
TATGAAACCGTCACTCAATAAAAATCAAAATCAGAGCCACGCGTCACGTACAAAACCGTGATTCA
GTGAGAATCAAAATCAAAGTTATGTCACT
Found at i:63105699 original size:202 final size:202
Alignment explanation
Indices: 63105242--63105793 Score: 839
Period size: 205 Copynumber: 2.7 Consensus size: 202
63105232 AGCTGAAACT
* *
63105242 AAGTACATTGAAACTAGTCTCCTTTTTTCCTTCAATATTGAACAAAAAAATAATTCTGAAATTTG
1 AAGTACATTGAAACTAGTCTCC-TATTTCCTTCGATATTGAACAAAAAAATAATT-TGAAATTTG
*
63105307 AATTACAATATAATAATGCTTGGTGCAGTGTAATCAATGAATGGAGATTCCCAATGAAAATTTTG
64 AATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTG
* *
63105372 ATTACACGTTTCATTCACACACAAATAATACATTACTTCTGAAACTGTCACTCAGTGAGAGTCGA
129 ATTA-ACGTTTCATTCACACACAAATAATACATCACTTATGAAACTGTCACTCAGTGAGAGTCGA
*
63105437 AACCAAAGTC
193 AACCAAAGCC
*
63105447 AAGTACATTGAAACTAATCTCCTATTTCACTTCGATATTGAACAAAAAAATAATTTGGAAATTTG
1 AAGTACATTGAAACTAGTCTCCTATTTC-CTTCGATATTGAACAAAAAAATAATTT-GAAATTTG
*
63105512 AATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAAT-AAAAATTTG
64 AATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTG
63105576 ATT-ACGTTTCATTCACACACAAATGAA-ACATCACTTATGAAACTGTCACTCAGTGAGAGTCGA
129 ATTAACGTTTCATTCACACACAAAT-AATACATCACTTATGAAACTGTCACTCAGTGAGAGTCGA
63105639 AACCAAAGCC
193 AACCAAAGCC
* * * *
63105649 AGGTACATCGAAACTAGTCTCCTATTTCCATCTGATATTG-A-AAAAAAA-AA-TTAAAATTTGA
1 AAGTACATTGAAACTAGTCTCCTATTTCCTTC-GATATTGAACAAAAAAATAATTTGAAATTTGA
** * *
63105710 ATTACAATATAATAATGCTTGGTGTGGTGTAATTAATGAATAGAGATTCTCAATGAAAATTTTGA
65 ATTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTGA
63105775 TTACACGTTTCATTCACAC
130 TTA-ACGTTTCATTCACAC
63105794 TTATGAAACT
Statistics
Matches: 322, Mismatches: 18, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
197 58 0.18
198 13 0.04
199 2 0.01
200 22 0.07
201 4 0.01
202 96 0.30
203 2 0.01
204 17 0.05
205 108 0.34
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (202 bp):
AAGTACATTGAAACTAGTCTCCTATTTCCTTCGATATTGAACAAAAAAATAATTTGAAATTTGAA
TTACAATATAATAATGCTTGGTGCAGTGTAATTAATGAATGGAGATTCCCAATGAAAATTTTGAT
TAACGTTTCATTCACACACAAATAATACATCACTTATGAAACTGTCACTCAGTGAGAGTCGAAAC
CAAAGCC
Found at i:63110536 original size:10 final size:10
Alignment explanation
Indices: 63110521--63110555 Score: 61
Period size: 10 Copynumber: 3.4 Consensus size: 10
63110511 TAATACAAGT
63110521 GTAAAATGCA
1 GTAAAATGCA
63110531 GTAAAAATGCA
1 GT-AAAATGCA
63110542 GTAAAATGCA
1 GTAAAATGCA
63110552 GTAA
1 GTAA
63110556 GTTTGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.51, C:0.09, G:0.20, T:0.20
Consensus pattern (10 bp):
GTAAAATGCA
Found at i:63110539 original size:11 final size:11
Alignment explanation
Indices: 63110523--63110555 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
63110513 ATACAAGTGT
63110523 AAAATGCAGTA
1 AAAATGCAGTA
63110534 AAAATGCAGT-
1 AAAATGCAGTA
63110544 AAAATGCAGTA
1 AAAATGCAGTA
63110555 A
1 A
63110556 GTTTGTTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.55, C:0.09, G:0.18, T:0.18
Consensus pattern (11 bp):
AAAATGCAGTA
Found at i:63126887 original size:15 final size:15
Alignment explanation
Indices: 63126862--63126894 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
63126852 ATTTGGTTAT
63126862 TAATATAATTAAATAA
1 TAATATAATTAAA-AA
63126878 TAAT-TAATTAAAAA
1 TAATATAATTAAAAA
63126892 TAA
1 TAA
63126895 ATACTAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 8 0.47
16 4 0.24
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (15 bp):
TAATATAATTAAAAA
Found at i:63135897 original size:14 final size:15
Alignment explanation
Indices: 63135878--63135907 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
63135868 TTGTTGGAAT
63135878 AATTTT-AAATTTAA
1 AATTTTAAAATTTAA
63135892 AATTTTAAAATTTAA
1 AATTTTAAAATTTAA
63135907 A
1 A
63135908 TAAATTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTTTAAAATTTAA
Found at i:63140333 original size:68 final size:67
Alignment explanation
Indices: 63140261--63140410 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
63140251 CATCATGTGT
* * * *
63140261 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
63140323 ATGTAG
62 ATGTAG
** * *
63140329 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
63140394 AG
66 AG
63140396 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
63140411 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:63140366 original size:64 final size:64
Alignment explanation
Indices: 63140285--63140468 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
63140275 AGACATTATG
* *
63140285 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
63140349 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
63140414 AA
63 AA
* * * *
63140416 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
63140469 CAAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:63148766 original size:25 final size:25
Alignment explanation
Indices: 63148731--63148778 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
63148721 CTTATATATA
63148731 TTGATACCTATGTATAAAATAAAAT
1 TTGATACCTATGTATAAAATAAAAT
* * *
63148756 TTGATATCTATTTATTAAATAAA
1 TTGATACCTATGTATAAAATAAA
63148779 TTCCAAGTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.42
Consensus pattern (25 bp):
TTGATACCTATGTATAAAATAAAAT
Found at i:63155577 original size:6 final size:6
Alignment explanation
Indices: 63155568--63155612 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
63155558 CACTGTAAGG
*
63155568 GTAACA GTAACA GTAACA GTAACA ATAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
63155613 GCGGTACACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.51, C:0.16, G:0.16, T:0.18
Consensus pattern (6 bp):
GTAACA
Found at i:63157407 original size:39 final size:39
Alignment explanation
Indices: 63157363--63157483 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
63157353 AATTATGTTA
*
63157363 CCAGCACAAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
* *
63157402 CCAGCACGAAGCCTGCGAGACTTTAGCCCAGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
*
63157441 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
63157480 CCAG
1 CCAG
63157484 TGTCTTGCTT
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.25, C:0.31, G:0.23, T:0.21
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
Found at i:63160093 original size:15 final size:15
Alignment explanation
Indices: 63160057--63160098 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
63160047 TAATATAATA
*
63160057 ATTTAATAAATATCT
1 ATTTAATAAAAATCT
63160072 A-TT-ATAAAAATCT
1 ATTTAATAAAAATCT
63160085 ATTTAATAACAAAT
1 ATTTAATAA-AAAT
63160099 ATTCTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
13 10 0.43
14 4 0.17
15 5 0.22
16 4 0.17
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTTAATAAAAATCT
Found at i:63166725 original size:3 final size:3
Alignment explanation
Indices: 63166719--63166744 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
63166709 TAATAAGCAC
63166719 GAA GAA GAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GA
63166745 GGATATTGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:63169912 original size:4 final size:4
Alignment explanation
Indices: 63169903--63169980 Score: 138
Period size: 4 Copynumber: 19.5 Consensus size: 4
63169893 AGTACAAGTG
* *
63169903 ATAC ATAC ATAC ATAC ATAC ACAC ATAC ACAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
63169951 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
63169981 GCATGCATGC
Statistics
Matches: 70, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 70 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (4 bp):
ATAC
Found at i:63171879 original size:28 final size:24
Alignment explanation
Indices: 63171811--63171869 Score: 100
Period size: 24 Copynumber: 2.4 Consensus size: 24
63171801 TCGTTTAGCT
63171811 TTTAAATCATATATATATACAATTTG
1 TTTAAAT-A-ATATATATACAATTTG
63171837 TTTAAATAATATATATACAATTTG
1 TTTAAATAATATATATACAATTTG
63171861 TTTAAATAA
1 TTTAAATAA
63171870 GTATGCTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 25 0.76
25 1 0.03
26 7 0.21
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (24 bp):
TTTAAATAATATATATACAATTTG
Found at i:63172937 original size:15 final size:15
Alignment explanation
Indices: 63172917--63172968 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
63172907 ACTACAAAGC
63172917 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
63172932 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
63172951 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
63172966 ATT
1 ATT
63172969 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:63173029 original size:15 final size:16
Alignment explanation
Indices: 63173000--63173035 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
63172990 AGGTGAAGAA
*
63173000 TATTATTTAATATTAT
1 TATTATTTAAAATTAT
63173016 TATT-TTTAAAATTAT
1 TATTATTTAAAATTAT
63173031 TATTA
1 TATTA
63173036 AAATAAAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:63173054 original size:19 final size:17
Alignment explanation
Indices: 63173022--63173065 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 17
63173012 TTATTATTTT
63173022 TAAAATTATTATTAAAA
1 TAAAATTATTATTAAAA
63173039 TAAAATTAATTTATTAAAA
1 TAAAATT-A-TTATTAAAA
63173058 TAATAATT
1 TAA-AATT
63173066 TATATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.29
18 1 0.04
19 12 0.50
20 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAATTATTATTAAAA
Found at i:63174559 original size:46 final size:44
Alignment explanation
Indices: 63174455--63174562 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
63174445 TATCTTTGAC
** * * *
63174455 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
63174499 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
63174545 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
63174563 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:63181271 original size:11 final size:11
Alignment explanation
Indices: 63181216--63181270 Score: 58
Period size: 11 Copynumber: 5.1 Consensus size: 11
63181206 TCAATATAAT
*
63181216 AGCAAAATAAC
1 AGCAAAACAAC
*
63181227 AGCAAAACACC
1 AGCAAAACAAC
*
63181238 AGCAAAACAAT
1 AGCAAAACAAC
*
63181249 AGTAAAA-AAC
1 AGCAAAACAAC
*
63181259 AACAAAACAAC
1 AGCAAAACAAC
63181270 A
1 A
63181271 ATAGGGAAAT
Statistics
Matches: 35, Mismatches: 8, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
10 7 0.20
11 28 0.80
ACGTcount: A:0.65, C:0.22, G:0.07, T:0.05
Consensus pattern (11 bp):
AGCAAAACAAC
Found at i:63185003 original size:25 final size:25
Alignment explanation
Indices: 63184975--63185083 Score: 75
Period size: 24 Copynumber: 4.4 Consensus size: 25
63184965 AGCTCTTTCA
63184975 AGCCATATAACAGGAAGCTCATAAG
1 AGCCATATAACAGGAAGCTCATAAG
** *
63185000 AGCC--ATAATTGGAAAGCTCATACG
1 AGCCATATAACAGG-AAGCTCATAAG
* * *
63185024 AGCCAT-TATCGGGTAGCTC-TAGAG
1 AGCCATATAACAGGAAGCTCATA-AG
*
63185048 AGCCAT-TAATCAGGAAGCTCATGAAAA
1 AGCCATATAA-CAGGAAGCTCAT--AAG
63185075 AGCCATATA
1 AGCCATATA
63185084 TTGGGAAGCT
Statistics
Matches: 63, Mismatches: 12, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
23 8 0.13
24 28 0.44
25 16 0.25
26 1 0.02
27 7 0.11
28 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.21, T:0.20
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATAAG
Found at i:63185041 original size:24 final size:24
Alignment explanation
Indices: 63184987--63185094 Score: 92
Period size: 24 Copynumber: 4.3 Consensus size: 24
63184977 CCATATAACA
* *
63184987 GGAAGCTCATAAGAGCCATAATTG
1 GGAAGCTCATAAGAGCCATTATCG
* *
63185011 GAAAGCTCATACGAGCCATTATCG
1 GGAAGCTCATAAGAGCCATTATCG
* *
63185035 GGTAGCTC-TAGAGAGCCATTAATCA
1 GGAAGCTCATA-AGAGCCATT-ATCG
* *
63185060 GGAAGCTCATGAAAAAGCCATATATTG
1 GGAAGCTCAT--AAGAGCCAT-TATCG
63185087 GGAAGCTC
1 GGAAGCTC
63185095 CGGAGAGCCA
Statistics
Matches: 66, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
23 2 0.03
24 34 0.52
25 10 0.15
26 1 0.02
27 17 0.26
28 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.21
Consensus pattern (24 bp):
GGAAGCTCATAAGAGCCATTATCG
Found at i:63185271 original size:24 final size:24
Alignment explanation
Indices: 63185220--63185281 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 24
63185210 ATATTAGGAA
* * * *
63185220 GCTCATGAGATCCAATATCGAGAT
1 GCTCATGAGAGCTAATAACGAGAC
*
63185244 GCTCATGAGAGCTAATAACGGGAC
1 GCTCATGAGAGCTAATAACGAGAC
* *
63185268 GCTCTTGTGAGCTA
1 GCTCATGAGAGCTA
63185282 TGGTGTGTCC
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (24 bp):
GCTCATGAGAGCTAATAACGAGAC
Found at i:63189762 original size:131 final size:131
Alignment explanation
Indices: 63189488--63190096 Score: 475
Period size: 131 Copynumber: 4.6 Consensus size: 131
63189478 GATGTTTGGC
* * * *
63189488 AATTCGCAGAATCGTGCCCTAACGTGTTGGGTTACAATTTCGCATTTGCTCAAAATAATCGAATA
1 AATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGTTCAAAACAATCGAATA
* * * * *
63189553 TCACTTCAAAATTTCACTCAT-GTCTTTTAAAAATCCCTTAAACGAAGGCGAT-ATGCGATATTT
66 TCCCTTCAAAATTTCACTC-TGGTCTTTTAAAAATCCTTTAAACGAAGGCAATAAT-CGGTGTTT
**
63189616 GGC
129 GAT
** * * * * *
63189619 AATTCGTGGAATCGTGCCCTAACGTGTTAGGTTGCAATTTCCCATTTGTTTAAAATAATCAAATA
1 AATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGTTCAAAACAATCGAATA
* *
63189684 TCCCTTCAAAATTTCACTCTGGTCTTCTAAAAATCCTTTAAAGGGAAGGCAATAATCGGTGTTTG
66 TCCCTTCAAAATTTCACTCTGGTCTTTTAAAAATCCTTTAAA-CGAAGGCAATAATCGGTGTTTG
63189749 AT
130 AT
* * ** ** *
63189751 AATTCG-AGAATCATGCCCTATCGTACTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATA
1 AATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGTTCAAAACAATCGAATA
* * *** * * *
63189815 TTCCTTTAGGTTTTCACTC-GTGT-TTATTAAAAA-CCTTCCAAAACGAAGACAATACTCGGTGT
66 TCCCTTCAAAATTTCACTCTG-GTCTT-TTAAAAATCCTT--TAAACGAAGGCAATAATCGGTGT
63189877 TTGAT
127 TTGAT
* * ** * * *
63189882 AATTCG-GGAATCGTGCCCGAACGTGTTGGGTTGTGATTTCTCGTTTTTTTCAAAACAATCGAAG
1 AATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTC-ATTTGTTCAAAACAATCGAAT
* ** * * ** *
63189946 ATTCCTTCAAAATTTCACTCACGT-TTATTAAAAA-CCTTTCAAAACGAATGCGATGTTCGATGT
65 ATCCCTTCAAAATTTCACTCTGGTCTT-TTAAAAATCCTTT--AAACGAAGGCAATAATCGGTGT
**
63190009 TTGGC
127 TTGAT
* * * * * ** * *
63190014 GATTTG-AGAATCGAGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGCTT-AAAACAATCGAAG
1 AATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTG-TTCAAAACAATCGAAT
*
63190077 ATCCCTTCGAAATTTCACTC
65 ATCCCTTCAAAATTTCACTC
63190097 GTATTTTCTA
Statistics
Matches: 389, Mismatches: 77, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
130 8 0.02
131 252 0.65
132 127 0.33
133 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.34
Consensus pattern (131 bp):
AATTCGCAGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCTCATTTGTTCAAAACAATCGAATA
TCCCTTCAAAATTTCACTCTGGTCTTTTAAAAATCCTTTAAACGAAGGCAATAATCGGTGTTTGA
T
Found at i:63190095 original size:263 final size:261
Alignment explanation
Indices: 63189449--63190098 Score: 602
Period size: 263 Copynumber: 2.5 Consensus size: 261
63189439 TCATTCATTC
* * * *
63189449 AAAAATTC-TTCAAAACGAAGACGA-GATTTGATGTTTGGCAATTCGCAGAATCGTGCCCTAACG
1 AAAAATCCTTTCAAAACGAAG-CGATG-TTCGATGTTTGGCAATTCG-AGAATCGAGCCCTATCG
* * * * * * * *
63189512 TGTTGGGTTACAATTTCGCATTTGCTCAAAATAATCGAATATCACTTCAAAATTTCACTCATGTC
63 TGCTGGGTTGCGATTTCTCATTTGCTTAAAACAATCGAATATCCCTTCAAAATTTCACTCGTGTC
* * * *
63189577 TTTTAAAAATCCCTTAAACGAAGGCGATATGCGATATTTGGCAATTCGTGGAATCGTGCCCTAAC
128 TTTTAAAAA-CCCTTAAACGAAGACAATATGCGATATTTGACAATTCGTGGAATCGTGCCCGAAC
* * **
63189642 GTGTTAGGTTGCAATTTCCCATTTGTTTAAAATAATCAAATATCCCTTCAAAATTTCACTCTGGT
192 GTGTTAGGTTGCAATTTCCCATTTGTTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACGT
63189707 CTTCT
257 CTTCT
** * ** * **
63189712 AAAAATCCTTT-AAAGGGAAGGCAATAATCGGTGTTTGATAATTCGAGAATC-ATGCCCTATCGT
1 AAAAATCCTTTCAAAACGAA-GCGATGTTCGATGTTTGGCAATTCGAGAATCGA-GCCCTATCGT
* * * * * ***
63189775 ACTGGGTTGTGATTTCTCGTTTG-TTCAAAACAATCGAATATTCCTTTAGGTTTTCACTCGTGT-
64 GCTGGGTTGCGATTTCTCATTTGCTT-AAAACAATCGAATATCCCTTCAAAATTTCACTCGTGTC
* * *
63189838 TTATTAAAAA-CCTTCCAAAACGAAGACAATACT-CGGTGTTTGATAATTCG-GGAATCGTGCCC
128 TT-TTAAAAACCCTT---AAACGAAGACAATA-TGCGATATTTGACAATTCGTGGAATCGTGCCC
* ** * * * * *
63189900 GAACGTGTTGGGTTGTGATTTCTCGTTTTTTTCAAAACAATCGAAGATTCCTTCAAAATTTCACT
188 GAACGTGTTAGGTTGCAATTTCCCATTTGTTT-AAAACAATCAAAGATCCCTTCAAAATTTCACT
*
63189965 CACGT-TTATT
252 CACGTCTT-CT
* *
63189975 AAAAA-CCTTTCAAAACGAATGCGATGTTCGATGTTTGGCGATTTGAGAATCGAGCCCTATCGTG
1 AAAAATCCTTTCAAAACGAA-GCGATGTTCGATGTTTGGCAATTCGAGAATCGAGCCCTATCGTG
* * * *
63190039 CTGGGTTGCGCTTTTTCATTTGCTTAAAACAATCGAAGATCCCTTCGAAATTTCACTCGT
65 CTGGGTTGCGATTTCTCATTTGCTTAAAACAATCGAATATCCCTTCAAAATTTCACTCGT
63190099 ATTTTCTAAG
Statistics
Matches: 301, Mismatches: 71, Indels: 30
0.75 0.18 0.07
Matches are distributed among these distances:
260 4 0.01
261 3 0.01
262 111 0.37
263 176 0.58
264 7 0.02
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.34
Consensus pattern (261 bp):
AAAAATCCTTTCAAAACGAAGCGATGTTCGATGTTTGGCAATTCGAGAATCGAGCCCTATCGTGC
TGGGTTGCGATTTCTCATTTGCTTAAAACAATCGAATATCCCTTCAAAATTTCACTCGTGTCTTT
TAAAAACCCTTAAACGAAGACAATATGCGATATTTGACAATTCGTGGAATCGTGCCCGAACGTGT
TAGGTTGCAATTTCCCATTTGTTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACGTCTTC
T
Found at i:63192082 original size:23 final size:23
Alignment explanation
Indices: 63192038--63192082 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
63192028 TTTTGTTGTT
* * * *
63192038 TAAATCAGGTTTATATTTATTTA
1 TAAATCAGATTTAAACTGATTTA
63192061 TAAATCAGATTTAAACTGATTT
1 TAAATCAGATTTAAACTGATTT
63192083 GCAATCTAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (23 bp):
TAAATCAGATTTAAACTGATTTA
Found at i:63205533 original size:132 final size:132
Alignment explanation
Indices: 63204362--63205520 Score: 1906
Period size: 132 Copynumber: 8.8 Consensus size: 132
63204352 CTACAGATCG
* * * * *
63204362 TGTTTCCCTGAAGTTACAGCGAAGCAGGTCAAAGACGGAGAATCTTGGCTTCCTGAAGTTGCAGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
* * *
63204427 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGAAGTAGGCTAAAATTTTATGT
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
63204492 CT
131 CT
*
63204494 TGTTTCCCT-AGAGTTGCAGTGAAGCAGATCAAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAG
1 TGTTTCCCTGA-AGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAG
* *
63204558 TGAAGCAGATTTAAGCCACAAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAATTTTAGG
65 TGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGG
63204623 TCT
130 TCT
* * * * *
63204626 TGTTTCCCTGAAGTTGCAGTGAAGTAGATCGAAGACGGCGGATCTTGACTTCCTAAAGTTACAGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
* * *
63204691 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTAGAGCAGGTTGAAATTTTAGGT
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
63204756 CT
131 CT
* *
63204758 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGCGGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
* *
63204823 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTCAGAT
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
63204888 CT
131 CT
* * * *
63204890 TGTTCCCCTGAAGATGTAGTGAAGCAGATCGAAGACGGCAAATCTTGGCTTCCTGAAGTTGCAGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
* *
63204955 GAAGTAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGC
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
63205020 CT
131 CT
* *
63205022 TGTTTCCCTGGAGTTGCAGTGAAGCAGATCGAAGACGCCGAATCTTGGCTTCCTGAAGTTGCAGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
*
63205087 GAAGCAGATTTAAGCTACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
63205152 CT
131 CT
* * *
63205154 TGTTTCCCTGAAGTTGCAGTGACGCAGATCAAAGACGGTGAATCTTGGCTTCCTGAAGTTGCAGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
*
63205219 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTAGAGTAGGCTGAAATTTTAGGT
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
63205284 CT
131 CT
* *
63205286 TGTTTCTCTGAAGTTGCAGTGAAGCAGATCGAAGACGGTGAATCTTGGCTTCCTGAAGTTGCAGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
63205351 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
63205416 CT
131 CT
* *
63205418 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGACTTCTTGAAGTTGCAGT
1 TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
* * * *
63205483 GAAGCATATTTAAGCGACTAACCTAGCTCTCTAAAGTT
66 GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTT
63205521 ATAGCGGGGT
Statistics
Matches: 957, Mismatches: 68, Indels: 4
0.93 0.07 0.00
Matches are distributed among these distances:
131 1 0.00
132 955 1.00
133 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (132 bp):
TGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGGCGAATCTTGGCTTCCTGAAGTTGCAGT
GAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTGAAATTTTAGGT
CT
Found at i:63205936 original size:25 final size:26
Alignment explanation
Indices: 63205902--63205950 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
63205892 CTGGCCCGAG
*
63205902 CAAACAAAACCA-AAAACCAAAAAAA
1 CAAACAAAACAAGAAAACCAAAAAAA
*
63205927 CAAACAAAACAAGAAAATCAAAAA
1 CAAACAAAACAAGAAAACCAAAAA
63205951 TATTATAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.76, C:0.20, G:0.02, T:0.02
Consensus pattern (26 bp):
CAAACAAAACAAGAAAACCAAAAAAA
Found at i:63208543 original size:131 final size:131
Alignment explanation
Indices: 63208391--63208875 Score: 421
Period size: 131 Copynumber: 3.7 Consensus size: 131
63208381 AGATTTGATG
* *
63208391 TTTGGCAATTCGCGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCGCGTTTGCTCAAAATAAT
1 TTTGGCAATTCG-GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCAAAATAAT
* *
63208456 CGAATATCACTTCAAAATTTCACTCATG-TCTTTTAAAAATCCCTT-AAACAAAGGCGATA-TGC
65 CGAATATCACTTCAAAATTTCACTCA-GATCTTCTAAAAATCCCTTAAAACAAAGGCAATACT-C
63208518 GATA
128 GATA
* *
63208522 TTTGGCAATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCATTTGTTTAAAATAAT
1 TTTGGCAATTCG-GGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCAAAATAAT
* * * * * *
63208587 CAAATATCCCTTCAAAATTTCACTCAGATCTTCTAAAAATCCTTTAAAACGAATGCAATACTCGG
65 CGAATATCACTTCAAAATTTCACTCAGATCTTCTAAAAATCCCTTAAAACAAAGGCAATACTCGA
*
63208652 TG
130 TA
** * * * * ** **
63208654 TTTGATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTTGTTTGTTCAAAATAATC
1 TTTGGCAATTCGGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCAAAATAATC
* *** * * * *
63208719 GAATATTC-CTTTAGGTTTTCACTC-G-TGTT-TATTAAAA-ACCTTCCAAAACGAAGACAATAC
66 GAATA-TCACTTCAAAATTTCACTCAGATCTTCTA--AAAATCCCTT--AAAACAAAGGCAATAC
* *
63208779 TCGGTG
126 TCGATA
** * ** * * *
63208785 TTTGATAATTCGGGAATCGTGCCCTAACGTCTTGGGTTGTGATTTCTCGTTTTTTTCAAAACAAT
1 TTTGGCAATTCGGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCG-TTTGTTCAAAATAAT
* *
63208850 CAAAGTTTC-CTTCAAAATTTCACTCA
65 CGAA-TATCACTTCAAAATTTCACTCA
63208876 CGTTTATTAA
Statistics
Matches: 293, Mismatches: 50, Indels: 20
0.81 0.14 0.06
Matches are distributed among these distances:
128 2 0.01
129 6 0.02
130 6 0.02
131 221 0.75
132 56 0.19
133 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (131 bp):
TTTGGCAATTCGGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCGTTTGTTCAAAATAATC
GAATATCACTTCAAAATTTCACTCAGATCTTCTAAAAATCCCTTAAAACAAAGGCAATACTCGAT
A
Found at i:63209004 original size:263 final size:263
Alignment explanation
Indices: 63208528--63209007 Score: 598
Period size: 263 Copynumber: 1.8 Consensus size: 263
63208518 GATATTTGGC
* *
63208528 AATTCGTGGAATCGTGCCCTAACGTGTTGGGTTGCAATTTCCCATTTGTTTAAAATAATCAAATA
1 AATTCGTGGAATCGTGCCCTAACGTCTTGGGTTGCAATTTCCCATTTGTTTAAAACAATCAAATA
* *
63208593 TCCCTTCAAAATTTCACTCAGATCTTCTAAAAATCCTTTAAAACGAATGCAATACTCGGTGTTTG
66 TCCCTTCAAAATTTCACTCAGATCTTCTAAAAATCCTTTAAAACGAAGGCAATACTCGATGTTTG
* * * * *
63208658 ATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTTGTTTGTTCAAAATAATCGAAT
131 ATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTTATTTGCTCAAAACAATCGAAG
* *
63208723 ATTCCTTTAGGTTTTCACTCGTGTTTATTAAAAACCTTCCAAAACGAAGACAATACTCGGTGTTT
196 ATTCCCTTAGGATTTCACTCGTGTTTATTAAAAACCTTCCAAAACGAAGACAATACTCGGTGTTT
63208788 GAT
261 GAT
** * * *
63208791 AATTCG-GGAATCGTGCCCTAACGTCTTGGGTTGTGATTTCTCGTTTTTTTCAAAACAATCAAAG
1 AATTCGTGGAATCGTGCCCTAACGTCTTGGGTTGCAATTTCCCATTTGTTT-AAAACAATCAAA-
* * * **
63208855 T-TTCCTTCAAAATTTCACTCACG-T-TTATTAAAAA-CCTTTCAAAACGAAGGCGATGTTCGAT
64 TATCCCTTCAAAATTTCACTCA-GATCTT-CTAAAAATCCTTT-AAAACGAAGGCAATACTCGAT
* * * *
63208916 GTTTGGTGATTTGAGAATCGA-GCCCTATCGTGCTGGGTTGCGCTTT-TTCATTTGCTCAAAACA
126 GTTTGATAATTCGAGAATC-ATGCCCTATCGTGCTGGGTTGCGATTTCTT-ATTTGCTCAAAACA
*
63208979 ATCGAAGA-TCCCTTCGGAATTTCACTCGT
189 ATCGAAGATTCCCTTAGG-ATTTCACTCGT
63209008 ATTTTCTAAG
Statistics
Matches: 183, Mismatches: 26, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
262 54 0.30
263 126 0.69
264 3 0.02
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.36
Consensus pattern (263 bp):
AATTCGTGGAATCGTGCCCTAACGTCTTGGGTTGCAATTTCCCATTTGTTTAAAACAATCAAATA
TCCCTTCAAAATTTCACTCAGATCTTCTAAAAATCCTTTAAAACGAAGGCAATACTCGATGTTTG
ATAATTCGAGAATCATGCCCTATCGTGCTGGGTTGCGATTTCTTATTTGCTCAAAACAATCGAAG
ATTCCCTTAGGATTTCACTCGTGTTTATTAAAAACCTTCCAAAACGAAGACAATACTCGGTGTTT
GAT
Found at i:63213015 original size:39 final size:39
Alignment explanation
Indices: 63212972--63213134 Score: 285
Period size: 39 Copynumber: 4.2 Consensus size: 39
63212962 TGAAATCTAG
63212972 CTGAAGCACATAAGTGCTAAACGGAAGCCC-GAAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCAG-AGGCTAA
63213011 CTGAAGCACATAAGTGCTAAACGGAAGCCCAGAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCAGAGGCTAA
63213050 CTGAAGCACATAAGTGCTAAACGGAAGCCCAGAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCAGAGGCTAA
*
63213089 CTGAAGCACATAAGTGCTAAACGGAAG-CCTGAAGGCTAA
1 CTGAAGCACATAAGTGCTAAACGGAAGCCCAG-AGGCTAA
63213128 CTGAAGC
1 CTGAAGC
63213135 TCATCAGAGC
Statistics
Matches: 121, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
38 3 0.02
39 117 0.97
40 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.26, T:0.13
Consensus pattern (39 bp):
CTGAAGCACATAAGTGCTAAACGGAAGCCCAGAGGCTAA
Found at i:63226224 original size:100 final size:97
Alignment explanation
Indices: 63226106--63226299 Score: 325
Period size: 100 Copynumber: 2.0 Consensus size: 97
63226096 ATTGAAGAAA
* * *
63226106 GCTTTGGTACTATGTGAAGATTCAAAGATAACAAATATACAAATACACAATGAAACTTAAAACTC
1 GCTTTGGTACCATGTGAAGATTCAAAGATAACAAATATACAAATACACAATGAAACTCAAAACGC
63226171 AAAGGAATACGAACTTAGAATAATAGAAAAAAAAT
66 AAAGG-A-A-GAACTTAGAATAATAGAAAAAAAAT
*
63226206 GCTTTGGTACCATGTGAAGATTCAAAGATAACAAATATACAAATACATAATGAAACTCAAAACGC
1 GCTTTGGTACCATGTGAAGATTCAAAGATAACAAATATACAAATACACAATGAAACTCAAAACGC
63226271 AAAGGAAGAACTTAGAATAATAGAAAAAA
66 AAAGGAAGAACTTAGAATAATAGAAAAAA
63226300 TTGGTACATT
Statistics
Matches: 90, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
97 22 0.24
98 1 0.01
99 1 0.01
100 66 0.73
ACGTcount: A:0.52, C:0.12, G:0.14, T:0.22
Consensus pattern (97 bp):
GCTTTGGTACCATGTGAAGATTCAAAGATAACAAATATACAAATACACAATGAAACTCAAAACGC
AAAGGAAGAACTTAGAATAATAGAAAAAAAAT
Found at i:63233173 original size:48 final size:47
Alignment explanation
Indices: 63233121--63233261 Score: 135
Period size: 51 Copynumber: 2.9 Consensus size: 47
63233111 ACCTTAAACG
63233121 GTTTTAT-TACATATTATTTTAAATTATTTTACATATTACTTATTTTAA
1 GTTTTATATACATATTATTTTAAA-TATTTTACATATTA-TTATTTTAA
*
63233169 GTTTTTTATATACATTATTTATTTTAAA-CTTTTACATATTATATATTTTAA
1 G--TTTTATATACA-TA-TTATTTTAAATATTTTACATATTAT-TATTTTAA
* * *
63233220 G-TTTATGTACATAATGTAGTTTAAACTATTTTATATATTATT
1 GTTTTATATACAT-AT-TATTTTAAA-TATTTTACATATTATT
63233262 TCTTTTAAAC
Statistics
Matches: 78, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
47 2 0.03
48 19 0.24
49 1 0.01
50 19 0.24
51 25 0.32
52 2 0.03
53 10 0.13
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (47 bp):
GTTTTATATACATATTATTTTAAATATTTTACATATTATTATTTTAA
Found at i:63233179 original size:23 final size:25
Alignment explanation
Indices: 63233133--63233188 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
63233123 TTTATTACAT
63233133 ATTATTTTAAATTATTTTACATATTAC
1 ATTATTTTAAATTATTTTA-ATA-TAC
*
63233160 -TTATTTTAAGTT-TTTT-ATATAC
1 ATTATTTTAAATTATTTTAATATAC
63233182 ATTATTT
1 ATTATTT
63233189 ATTTTAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
22 3 0.11
23 9 0.33
25 4 0.15
26 11 0.41
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTATTTTAAATTATTTTAATATAC
Found at i:63233191 original size:27 final size:27
Alignment explanation
Indices: 63233122--63233196 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 27
63233112 CCTTAAACGG
63233122 TTTTAT-TACA-TATTATTTTAAATTA
1 TTTTATATACATTATTATTTTAAATTA
* *
63233147 TTTTACAT--ATTACTTATTTTAAGTT-
1 TTTTATATACATTA-TTATTTTAAATTA
63233172 TTTTATATACATTATTTATTTTAAA
1 TTTTATATACATTA-TTATTTTAAA
63233197 CTTTTACATA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
24 1 0.03
25 14 0.35
26 12 0.30
27 13 0.32
ACGTcount: A:0.33, C:0.05, G:0.01, T:0.60
Consensus pattern (27 bp):
TTTTATATACATTATTATTTTAAATTA
Found at i:63233202 original size:51 final size:49
Alignment explanation
Indices: 63233122--63233223 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 49
63233112 CCTTAAACGG
63233122 TTTTATTACATATTATTTTAAATTATTTTACATATTACT-TATTTTAAGTT
1 TTTTATTACATATTATTTTAAA-TATTTTACATATTA-TATATTTTAAGTT
*
63233172 TTTTATATACATTATTTATTTTAAA-CTTTTACATATTATATATTTTAAGTT
1 TTTTAT-TACA-TA-TTATTTTAAATATTTTACATATTATATATTTTAAGTT
63233223 T
1 T
63233224 ATGTACATAA
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
50 7 0.15
51 28 0.60
52 2 0.04
53 10 0.21
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (49 bp):
TTTTATTACATATTATTTTAAATATTTTACATATTATATATTTTAAGTT
Found at i:63233215 original size:24 final size:23
Alignment explanation
Indices: 63233132--63233323 Score: 81
Period size: 24 Copynumber: 7.7 Consensus size: 23
63233122 TTTTATTACA
*
63233132 TATTATTTTAAATTATTTTACATAT
1 TATTATTTTAAA--CTTTTACATAT
** *
63233157 TACTTATTTTAAGTTTTTTATATACAT
1 TA-TTATTTTAA-ACTTTTACAT--AT
63233184 TATTTATTTTAAACTTTTACATAT
1 TA-TTATTTTAAACTTTTACATAT
**
63233208 TATATATTTTAAGTTTATGTACATA-
1 TAT-TATTTTAAACTT-T-TACATAT
* *
63233233 -ATGTAGTTTAAACTATTTTATATAT
1 TAT-TATTTTAAAC--TTTTACATAT
*
63233258 TATTTCTTTTAAACCTTTT--ATAT
1 TA-TTATTTTAAA-CTTTTACATAT
63233281 TAGTTATTTTAAACCGTTTTACAT-T
1 TA-TTATTTTAAA-C-TTTTACATAT
63233306 GT-TTATTTTAAACATTTT
1 -TATTATTTTAAAC-TTTT
63233324 TTTGTTATTT
Statistics
Matches: 131, Mismatches: 19, Indels: 36
0.70 0.10 0.19
Matches are distributed among these distances:
23 23 0.18
24 42 0.32
25 16 0.12
26 35 0.27
27 15 0.11
ACGTcount: A:0.32, C:0.07, G:0.04, T:0.57
Consensus pattern (23 bp):
TATTATTTTAAACTTTTACATAT
Found at i:63233279 original size:25 final size:24
Alignment explanation
Indices: 63233239--63233391 Score: 91
Period size: 24 Copynumber: 6.3 Consensus size: 24
63233229 CATAATGTAG
63233239 TTTAAACTATTTTATATATTATTTCT
1 TTTAAAC-ATTTT-TATATTATTTCT
* * *
63233265 TTTAAAC-CTTTTATATTAGTTAT
1 TTTAAACATTTTTATATTATTTCT
** * * *
63233288 TTTAAACCGTTTTACATTGTTTAT
1 TTTAAACATTTTTATATTATTTCT
* *
63233312 TTTAAACATTTTTTTGTTATTT-T
1 TTTAAACATTTTTATATTATTTCT
*
63233335 TTT-AACTATTTTATATATTA-TTCAC
1 TTTAAAC-ATTTT-TATATTATTTC-T
* *
63233360 TTTAAA-TTTTTTATATAATATTCAT
1 TTTAAACATTTTTATATTAT-TTC-T
63233385 TTTAAAC
1 TTTAAAC
63233392 TGTTTTTTAA
Statistics
Matches: 99, Mismatches: 19, Indels: 18
0.73 0.14 0.13
Matches are distributed among these distances:
22 3 0.03
23 34 0.34
24 40 0.40
25 13 0.13
26 9 0.09
ACGTcount: A:0.30, C:0.08, G:0.03, T:0.59
Consensus pattern (24 bp):
TTTAAACATTTTTATATTATTTCT
Found at i:63233368 original size:23 final size:24
Alignment explanation
Indices: 63233343--63233390 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
63233333 TTTTTAACTA
*
63233343 TTTTATATATTATTCACTTTAAATT
1 TTTTATATAATATTCACTTTAAA-T
*
63233368 TTTTATATAATATTCATTTTAAA
1 TTTTATATAATATTCACTTTAAA
63233391 CTGTTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.58
Consensus pattern (24 bp):
TTTTATATAATATTCACTTTAAAT
Found at i:63233660 original size:18 final size:17
Alignment explanation
Indices: 63233599--63233665 Score: 55
Period size: 18 Copynumber: 3.8 Consensus size: 17
63233589 CTCTTTATAC
*
63233599 ATTATTTATTTTTTTTAT
1 ATTATTTA-TTTTATTAT
* *
63233617 ATTATTTATGTTA-AACT
1 ATTATTTATTTTATTA-T
*
63233634 TTTATTTTATTTTATGTAT
1 ATTA-TTTATTTTAT-TAT
63233653 ATTATTTATTTTA
1 ATTATTTATTTTA
63233666 AATTTCCTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
16 1 0.03
17 7 0.18
18 25 0.66
19 4 0.11
20 1 0.03
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (17 bp):
ATTATTTATTTTATTAT
Found at i:63233749 original size:25 final size:24
Alignment explanation
Indices: 63233699--63233758 Score: 77
Period size: 24 Copynumber: 2.5 Consensus size: 24
63233689 TTTTAGACTT
*
63233699 TTTATTTTAAATTGTTTTGTATTA
1 TTTATTTTAAATTGCTTTGTATTA
*
63233723 TTTACTTTAAATTGCTTT-TATGGTA
1 TTTATTTTAAATTGCTTTGTAT--TA
63233748 TTTATTTTAAA
1 TTTATTTTAAA
63233759 CCTTTTTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 3 0.10
24 16 0.52
25 12 0.39
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (24 bp):
TTTATTTTAAATTGCTTTGTATTA
Found at i:63237024 original size:57 final size:56
Alignment explanation
Indices: 63236962--63237119 Score: 152
Period size: 57 Copynumber: 2.9 Consensus size: 56
63236952 TTTTTATAGT
* *
63236962 ATTATATATTATGATTT-TT-AATTCATA-TAATAATAATTATATTAAGAATTTTATTAA
1 ATTATATATTAT--TTTATTGAATT-ATATTAATAATAATTATATTAA-AATATGATTAA
* *
63237019 ATTATATATTATTTTATTGAATTATATTTAATAATAATTATGTTAAAATATGGTTAA
1 ATTATATATTATTTTATTGAATTATA-TTAATAATAATTATATTAAAATATGATTAA
* *
63237076 ATTATTTATTATTTAATT--ATT-T-TTAATAATAATCT-TATTAAAAT
1 ATTATATATTATTTTATTGAATTATATTAATAATAAT-TATATTAAAAT
63237120 TTAATAACAA
Statistics
Matches: 89, Mismatches: 7, Indels: 15
0.80 0.06 0.14
Matches are distributed among these distances:
52 19 0.21
53 1 0.01
54 1 0.01
55 6 0.07
56 5 0.06
57 40 0.45
58 17 0.19
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (56 bp):
ATTATATATTATTTTATTGAATTATATTAATAATAATTATATTAAAATATGATTAA
Found at i:63237308 original size:16 final size:16
Alignment explanation
Indices: 63237282--63237336 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
63237272 TGAATTACTA
*
63237282 ATTACAACTCTATTCC
1 ATTACAGCTCTATTCC
* *
63237298 ATTATAGCTCTATTCA
1 ATTACAGCTCTATTCC
*
63237314 ATTACAGCCCTATTCC
1 ATTACAGCTCTATTCC
63237330 ATTACAG
1 ATTACAG
63237337 TGAACCAAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.27, G:0.05, T:0.36
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:63244809 original size:13 final size:13
Alignment explanation
Indices: 63244791--63244817 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
63244781 AATAGCTTCG
63244791 GCTACACTTATCT
1 GCTACACTTATCT
63244804 GCTACACTTATCT
1 GCTACACTTATCT
63244817 G
1 G
63244818 ATCAAGGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.11, T:0.37
Consensus pattern (13 bp):
GCTACACTTATCT
Found at i:63244841 original size:63 final size:63
Alignment explanation
Indices: 63244742--63244867 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
63244732 ATAGCTTCGA
63244742 CTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTG
1 CTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTG
* * *
63244805 CTACACTTATCTGATCAAGGACTAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTG
1 CTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTG
63244868 ATCAAGGACA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (63 bp):
CTACACTTATCTGATCAAGGACAAATGAAAGTGATAAGTAATAGCTTCGGCTACACTTATCTG
Found at i:63244908 original size:51 final size:50
Alignment explanation
Indices: 63244804--63244909 Score: 167
Period size: 50 Copynumber: 2.1 Consensus size: 50
63244794 ACACTTATCT
* * *
63244804 GCTACACTTATCTGATCAAGGACTAGTGAAAGTGATAAGTGATAGCTTCG
1 GCTACACTTATCTGATCAAGGACAAATGAAAGTGAAAAGTGATAGCTTCG
*
63244854 GCTACACTTATCTGATCAAGGACAAATGACAAGTGAAAAGTGGTAGCTTCG
1 GCTACACTTATCTGATCAAGGACAAATGA-AAGTGAAAAGTGATAGCTTCG
63244905 GCTAC
1 GCTAC
63244910 CTGATCAATG
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
50 27 0.53
51 24 0.47
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (50 bp):
GCTACACTTATCTGATCAAGGACAAATGAAAGTGAAAAGTGATAGCTTCG
Found at i:63244925 original size:31 final size:31
Alignment explanation
Indices: 63244885--63245033 Score: 210
Period size: 31 Copynumber: 4.8 Consensus size: 31
63244875 ACAAATGACA
63244885 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
63244916 AATGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
63244947 AGTGAAAAGTGGTAGCTCCGGCTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
63244978 AGTGCAAAA-TGGTAGCTCCGACTACCTGATC
1 AGTG-AAAAGTGGTAGCTTCGGCTACCTGATC
* *
63245009 AGCGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
63245034 AAGTGACAAG
Statistics
Matches: 104, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
30 3 0.03
31 97 0.93
32 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:63245206 original size:49 final size:48
Alignment explanation
Indices: 63245133--63245238 Score: 140
Period size: 49 Copynumber: 2.2 Consensus size: 48
63245123 GCATCAGTGA
* * * *
63245133 GATATGTGATTCGTGTAAGACCATAGCTGGGCTACGCCATCGATATGT
1 GATATGTGATACGTGTAAGACCATAGCTAGGCTACGACATCGATATAT
* *
63245181 GATATGTGACTACGTGTAAGGCCATAGCTAGGCTATGACATCGATATAT
1 GATATGTGA-TACGTGTAAGACCATAGCTAGGCTACGACATCGATATAT
63245230 GAATATGTG
1 G-ATATGTG
63245239 TAAGACCATA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
48 9 0.18
49 34 0.68
50 7 0.14
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.29
Consensus pattern (48 bp):
GATATGTGATACGTGTAAGACCATAGCTAGGCTACGACATCGATATAT
Found at i:63245292 original size:42 final size:42
Alignment explanation
Indices: 63245194--63245308 Score: 142
Period size: 42 Copynumber: 2.7 Consensus size: 42
63245184 ATGTGACTAC
* * * * *
63245194 GTGTAAGGCCATAGCTAGGCTATGACATCGATATATGAATAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAAGAT
*
63245236 GTGTAAGACCATAGTTGGGCTATGGCATC-ATTATGTGAAGAT
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA-TATATGAAGAT
**
63245278 GTGTAAGACCATAGTTGAACTATGGCATCGA
1 GTGTAAGACCATAGTTGGGCTATGGCATCGA
63245309 GAAAACGAAG
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 61 0.97
43 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATAGTTGGGCTATGGCATCGATATATGAAGAT
Found at i:63247990 original size:12 final size:12
Alignment explanation
Indices: 63247973--63248002 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
63247963 ATTCATTTGA
63247973 CATTCATGCATT
1 CATTCATGCATT
63247985 CATTCATGCATT
1 CATTCATGCATT
63247997 CATTCA
1 CATTCA
63248003 ACATTGCATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:63256422 original size:69 final size:70
Alignment explanation
Indices: 63256248--63256422 Score: 235
Period size: 71 Copynumber: 2.5 Consensus size: 70
63256238 TTTTCAAGGG
* * * *
63256248 AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTTG
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
63256313 TTTTCA
66 TTTT-A
* ** * *
63256319 AAATTAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTATG
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
63256384 TTTT-
66 TTTTA
* *
63256388 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCT
63256423 TTAATTTTTG
Statistics
Matches: 92, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
69 32 0.35
71 60 0.65
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (70 bp):
AAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTTAATTTATG
TTTTA
Found at i:63256541 original size:71 final size:71
Alignment explanation
Indices: 63256425--63256585 Score: 243
Period size: 71 Copynumber: 2.3 Consensus size: 71
63256415 TTAAGCCTTT
** *
63256425 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGG
1 AATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
63256489 TATTTTC
65 TATTTTC
*
63256496 AATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGG
1 AATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGG
63256561 TATTTTC
65 TATTTTC
* *
63256568 AATTTCTGTTTTCAATTT
1 AATTTTTGTTTTTAATTT
63256586 ACGTTGTTCA
Statistics
Matches: 82, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
71 51 0.62
72 31 0.38
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (71 bp):
AATTTTTGTTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGT
ATTTTC
Found at i:63256689 original size:140 final size:140
Alignment explanation
Indices: 63256518--63257144 Score: 1114
Period size: 140 Copynumber: 4.5 Consensus size: 140
63256508 TTAATTTCAA
63256518 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
63256583 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
63256648 TCAAAATCAG
131 TCAAAATCAG
* *
63256658 CTCATATTGCGAGAGATGAGTTGAGCCTCAGGTCACG-TGAGGTATTTTCAATTTCTATTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
63256722 TTTACGTTGTTCAAGAATCAACTCATATTGCAAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
63256787 TCAAAATCAG
131 TCAAAATCAG
* * *
63256797 CTCATATTGCAAGAGGTGAGTTGAGGCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
63256862 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
63256927 TCAAAATCAG
131 TCAAAATCAG
* *
63256937 CTCATATTGCGAGAGGTGAGTTGAGCTTCAGGTCACACTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
63257002 TTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
63257067 TCAAAATCAG
131 TCAAAATCAG
63257077 CTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
63257141 TCAA
62 TCAA
63257145 AAAAAATTCA
Statistics
Matches: 463, Mismatches: 19, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
139 136 0.29
140 299 0.65
142 22 0.05
143 6 0.01
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:63256718 original size:13 final size:13
Alignment explanation
Indices: 63256700--63256724 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
63256690 TCACGTGAGG
63256700 TATTTTCAATTTC
1 TATTTTCAATTTC
63256713 TATTTTCAATTT
1 TATTTTCAATTT
63256725 ACGTTGTTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:63257000 original size:13 final size:13
Alignment explanation
Indices: 63256982--63257015 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
63256972 CACTGAGGTA
*
63256982 TTTTCAATTTCTG
1 TTTTCAATTTATG
63256995 TTTTCAATTTATG
1 TTTTCAATTTATG
63257008 TTGTTCAA
1 TT-TTCAA
63257016 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:63257239 original size:72 final size:72
Alignment explanation
Indices: 63257064--63257287 Score: 290
Period size: 72 Copynumber: 3.0 Consensus size: 72
63257054 AATTTCTACT
* ** * * * *
63257064 TTTTCAAAA-TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTT
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG---ACACGTTGAGGTAATT
63257127 TCAATTTCTG
63 TCAATTTCTG
63257137 TCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
1 T-TTTC----AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAA
63257202 TTTCAATTTCTG
61 TTTCAATTTCTG
*
63257214 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTAATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
63257279 ATTTCTG
66 ATTTCTG
63257286 TT
1 TT
63257288 CAAAATGAGT
Statistics
Matches: 136, Mismatches: 8, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
72 68 0.50
73 1 0.01
74 4 0.03
76 4 0.03
77 24 0.18
78 4 0.03
79 30 0.22
80 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCA
ATTTCTG
Found at i:63257372 original size:271 final size:270
Alignment explanation
Indices: 63257054--63257558 Score: 712
Period size: 271 Copynumber: 1.9 Consensus size: 270
63257044 TGAACCTTTT
* ** ** *
63257054 AATTTCTACTTTTTCAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCACATGCTG
1 AATTTCTAC-TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAG-C-CAATACACATGCTG
63257119 AGGTATTTTCAATTTCTG-TCTTTCAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCC
63 AGGTATTTTCAATTTCTGTTCTTTCAAAAAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCC
* *
63257183 TCAAGACACGTTGAGGTAATTTCAATTTCTG-TTTTC-AAAATTCAACTCATATTGCGAGAAATG
127 TCAAGACACGCTGAGGT-ATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATG
* *
63257246 AGTTGAGCCTTAAGACACGTTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGAC
191 AGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGAC
63257311 CGCTGAGGTAATTTC
256 CGCTGAGGTAATTTC
* *
63257326 AATTTCTA-TTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCAATAGACATGCTGAG
1 AATTTCTACTTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCAATACACATGCTGAG
* **** *
63257390 GTATTTTCAATTTCTGTTTTTTTTTTAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCA
65 GTATTTTCAATTTCTGTTCTTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
* * **
63257455 AGACATGCTGAGGTATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGT
130 AGACACGCTGAGGTATTTCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGT
*
63257520 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTT
194 TGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
63257559 GTCAAAAAAA
Statistics
Matches: 205, Mismatches: 23, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
268 12 0.06
269 78 0.38
270 19 0.09
271 88 0.43
272 8 0.04
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (270 bp):
AATTTCTACTTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCAATACACATGCTGAGG
TATTTTCAATTTCTGTTCTTTCAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAA
GACACGCTGAGGTATTTCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTG
AGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCAAAATGAGTTGAGCCTCAAGACCGCTG
AGGTAATTTC
Found at i:63257390 original size:120 final size:121
Alignment explanation
Indices: 63257169--63257407 Score: 392
Period size: 120 Copynumber: 2.0 Consensus size: 121
63257159 ATATTGCGAG
* *
63257169 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
* *
63257234 TTGCGAGAAATGAGTTGAGCCTTAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
66 TTGCGAGAAATGAGTTGAGCCATAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
63257290 AAATGAGTTGAGCCTCAAGAC-CGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
* * *
63257354 TTGCGAGAAATTAGTTGAGCCA-ATAGACATGCTGAGGTATTTTCAATTTCTGTT
66 TTGCGAGAAATGAGTTGAGCCATA-AGACACGCTGAGGTAATTTCAATTTCTGTT
63257408 TTTTTTTTAA
Statistics
Matches: 110, Mismatches: 7, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
119 1 0.01
120 88 0.80
121 21 0.19
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (121 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTATTTTCAAAATTCAACTCATA
TTGCGAGAAATGAGTTGAGCCATAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:63257441 original size:77 final size:76
Alignment explanation
Indices: 63257334--63257558 Score: 271
Period size: 77 Copynumber: 3.0 Consensus size: 76
63257324 TCAATTTCTA
* * *
63257334 TTTTCAAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCAATAGACATGCTGAGGTATTTTCA
1 TTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCC-ATAGACATGCTGAGGTATTTTCA
63257399 ATTTCTGTTTTT
65 ATTTCTGTTTTT
* *
63257411 TTTTTAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-TCAAGACATGCTGAGGTATTTT-
1 TTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCAT--AGACATGCTGAGGTATTTTC
63257474 AATTTCTG--TTT
64 AATTTCTGTTTTT
** ** * *
63257485 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCAGGACACGCTGAGGTAATTTC
1 TTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCAT-A-GACATGCTGAGGTATTTTC
63257549 AATTTCTGTT
64 AATTTCTGTT
63257559 GTCAAAAAAA
Statistics
Matches: 129, Mismatches: 13, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
73 1 0.01
74 55 0.43
75 9 0.07
76 8 0.06
77 56 0.43
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (76 bp):
TTTTAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCATAGACATGCTGAGGTATTTTCAA
TTTCTGTTTTT
Found at i:63257519 original size:74 final size:74
Alignment explanation
Indices: 63257290--63257640 Score: 363
Period size: 74 Copynumber: 4.7 Consensus size: 74
63257280 TTTCTGTTCA
* * *
63257290 AAATGAGTTGAGCCTCAAGAC-CGCTGAGGTAATTTCAATTTCT-ATTTTC--AAAATTCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTAATTTCTGTTTTTCAAAAAAATCAACTC
63257351 ATATTGCGAG
65 ATATTGCGAG
* * * ***
63257361 AAATTAGTTGAGCC-AATAGACATGCTGAGGTATTTTCAATTTCTGTTTTTTTTTTAAAAATCAA
1 AAATGAGTTGAGCCTCA-AGACACGCTGAGGTATTTT-AATTTCTG--TTTTTCAAAAAAATCAA
*
63257425 CTCATATTGTGAG
62 CTCATATTGCGAG
*
63257438 AAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTAATTTCTGTTTTTCAAAAAAATCAACTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAAAATCAACTCA
63257503 TATTGCGAG
66 TATTGCGAG
** * * *
63257512 AGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGT-ATTTTAATTTCTGTTTTTCAAAAAAATCAACTC
* *
63257576 GTATTGTGAG
65 ATATTGCGAG
*** * * *
63257586 AGGCGAGTTGAGCCTCATGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAA
1 AAATGAGTTGAGCCTCAAG--ACACGCTGAGGTATTTT-AATTTCTGTTTTTCAA
63257641 TTTCTGCCTT
Statistics
Matches: 238, Mismatches: 28, Indels: 22
0.83 0.10 0.08
Matches are distributed among these distances:
70 1 0.00
71 21 0.09
72 15 0.06
74 96 0.40
75 20 0.08
76 26 0.11
77 58 0.24
78 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (74 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAATTTCTGTTTTTCAAAAAAATCAACTCA
TATTGCGAG
Found at i:63257687 original size:93 final size:93
Alignment explanation
Indices: 63257562--63257733 Score: 231
Period size: 93 Copynumber: 1.8 Consensus size: 93
63257552 TTCTGTTGTC
* * *
63257562 AAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAT-G-TCACACGCCGAGGTATTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCT--TGGCTCACACGCCGAGCTATTTTC
*
63257625 AATTTCCGTTTTTCAATTTCTGCCTTTCAA
64 AATTTCCGTCTTTCAATTTCTGCCTTTCAA
* * * *
63257655 AAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTGGCTCACACGCCGAGCTATTTTCAA
*
63257720 TTTCTGTCTTTCAA
66 TTTCCGTCTTTCAA
63257734 AAAAATCAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
91 1 0.01
92 1 0.01
93 66 0.97
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTTGGCTCACACGCCGAGCTATTTTCAA
TTTCCGTCTTTCAATTTCTGCCTTTCAA
Found at i:63257763 original size:77 final size:77
Alignment explanation
Indices: 63257634--63258015 Score: 354
Period size: 79 Copynumber: 4.7 Consensus size: 77
63257624 CAATTTCCGT
** *
63257634 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
*
63257699 CACGCGCTGAGCTA
64 CACACGCTGAGCTA
* * *
63257713 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGATC
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTC
* *
63257777 ACACACTGAGGTA
65 ACACGCTGAGCTA
* * * * * * *
63257790 TTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGATATGTGAGTTGAGCCTCGGGT
1 --TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
63257855 CACATG-TCGAGGTA
64 CACACGCT-GAGCTA
** *
63257869 TTTTCAAAATCTGTTTTTCAGATTCTATTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTCAATTTCTGTTTTTCA-A----A-----AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
**
63257934 CCTTGGCTCACGTGCTGAGCTA
56 CCTTGGCTCACACGCTGAGCTA
*
63257956 TTTTCAATTTCTATTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTC---TGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
63258016 TTTTTAATTT
Statistics
Matches: 250, Mismatches: 33, Indels: 38
0.78 0.10 0.12
Matches are distributed among these distances:
76 3 0.01
77 64 0.26
78 2 0.01
79 79 0.32
80 6 0.02
81 29 0.12
82 1 0.00
85 1 0.00
87 55 0.22
88 1 0.00
89 1 0.00
90 8 0.03
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (77 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCA
CACGCTGAGCTA
Found at i:63257953 original size:243 final size:239
Alignment explanation
Indices: 63257412--63258017 Score: 720
Period size: 243 Copynumber: 2.5 Consensus size: 239
63257402 TCTGTTTTTT
* * * ** * *
63257412 TTTTAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCC-T--CAAGACATGCTGAGGTATTTT
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGC-TCACGTGCTGAGCTATTTT
* * *
63257474 -AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
65 CAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGCACACACT
* ** *
63257538 GAGGTAATTTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGTGAGAGGCGAGTTGAGCCTCA
130 GAGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCA
* ** *
63257603 TGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGC
195 GGTCACACGCCGAGGTATTTTCAAAATCCGTTTTTCAATTTCTGA
* * * *
63257648 CTTTCAAAAAAAAATCAAGTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA
1 TTTTC-----AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTA
*
63257713 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
61 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG--CA
* * * * * *
63257778 CACACTGAGGTATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGATATGTGAGT
124 CACACTGAGGTA--ATTTCAATTTAT-GTTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGT
* * * *
63257843 TGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGTTTTTCAGA-TTCT-A
186 TGAGCCTCAGGTCACACGCCGAGGTATTTTCAAAATCCGTTTTTCA-ATTTCTGA
63257896 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
1 TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
*
63257961 AATTTCTATTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTT
66 AATTTC---TGTTTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCTT
63258018 TTTAATTTTT
Statistics
Matches: 312, Mismatches: 39, Indels: 27
0.83 0.10 0.07
Matches are distributed among these distances:
236 3 0.01
241 31 0.10
242 1 0.00
243 77 0.25
244 55 0.18
246 25 0.08
247 32 0.10
248 14 0.04
249 73 0.23
250 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.34
Consensus pattern (239 bp):
TTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTC
AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGCACACACTG
AGGTAATTTCAATTTATGTTGTCAAAAAAATCAACTCACATTGCGAGAGGCGAGTTGAGCCTCAG
GTCACACGCCGAGGTATTTTCAAAATCCGTTTTTCAATTTCTGA
Found at i:63257973 original size:87 final size:87
Alignment explanation
Indices: 63257814--63257973 Score: 214
Period size: 87 Copynumber: 1.8 Consensus size: 87
63257804 ATTTTTCAAA
* * * *
63257814 AAAATCAACTCACATTGCGATATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAAT
1 AAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAAT
*
63257879 CTGTTTTTCAGATTCTATTTTC
66 CTATTTTTCAGATTCTATTTTC
* * * **
63257901 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAATT
1 AAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAAA
63257965 TCTATTTTT
65 TCTATTTTT
63257974 TTTCAAAAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
86 1 0.02
87 61 0.98
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (87 bp):
AAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAAAT
CTATTTTTCAGATTCTATTTTC
Done.