Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 201 of 259
Found at i:63968192 original size:14 final size:14
Alignment explanation
Indices: 63968173--63968210 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
63968163 TGTTTAACTC
63968173 AAAATGACTTCT-G
1 AAAATGACTTCTAG
*
63968186 AAAAATGATTTCTAG
1 -AAAATGACTTCTAG
63968201 AAAATGACTT
1 AAAATGACTT
63968211 ACGCTGCTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 20 0.95
15 1 0.05
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.32
Consensus pattern (14 bp):
AAAATGACTTCTAG
Found at i:63981426 original size:17 final size:17
Alignment explanation
Indices: 63981404--63981440 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
63981394 TAAGAAGGAA
63981404 TAATTAAAAATTTTAAT
1 TAATTAAAAATTTTAAT
*
63981421 TAATTAAAATTTTTAAT
1 TAATTAAAAATTTTAAT
63981438 TAA
1 TAA
63981441 AAATCTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TAATTAAAAATTTTAAT
Found at i:63995918 original size:12 final size:12
Alignment explanation
Indices: 63995901--63995925 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
63995891 CAAATATACC
63995901 ACCAGATTTATT
1 ACCAGATTTATT
63995913 ACCAGATTTATT
1 ACCAGATTTATT
63995925 A
1 A
63995926 AGAATAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (12 bp):
ACCAGATTTATT
Found at i:63997894 original size:13 final size:14
Alignment explanation
Indices: 63997871--63997899 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
63997861 CATACCAGAG
63997871 TTATCTATTTATTA
1 TTATCTATTTATTA
63997885 TTAT-TATTTATTA
1 TTATCTATTTATTA
63997898 TT
1 TT
63997900 CTTCTGAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (14 bp):
TTATCTATTTATTA
Found at i:64003173 original size:5 final size:5
Alignment explanation
Indices: 64003165--64003199 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
64003155 TGGAAGACTC
64003165 TATTT TATTT TATTT TATTT TATTT TATTT ATATT
1 TATTT TATTT TATTT TATTT TATTT TATTT -TATT
64003200 AGGATAATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
TATTT
Found at i:64009892 original size:43 final size:42
Alignment explanation
Indices: 64009803--64009895 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
64009793 TATCCATACT
* * *
64009803 GCCAAACAGTCCTATTCCAGCCCAGAATGCCATATCTCTGCA
1 GCCAAACAGTCCTATTCCAGCCCAGAATCCCAAAACTCTGCA
* *
64009845 GCCAAACAGTCCTATTCCAGCCTTAGAATCCCCAAAAC-CTGTA
1 GCCAAACAGTCCTATTCCAGCC-CAGAAT-CCCAAAACTCTGCA
64009888 GCCAAACA
1 GCCAAACA
64009896 CCCATTTTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
42 22 0.50
43 17 0.39
44 5 0.11
ACGTcount: A:0.32, C:0.35, G:0.13, T:0.19
Consensus pattern (42 bp):
GCCAAACAGTCCTATTCCAGCCCAGAATCCCAAAACTCTGCA
Found at i:64011660 original size:15 final size:15
Alignment explanation
Indices: 64011642--64011695 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
64011632 TATTTTATTT
64011642 ATATTAGGATAATTA
1 ATATTAGGATAATTA
*
64011657 ATATTAAGAT-A--A
1 ATATTAGGATAATTA
*
64011669 ATATTAGGATTATTTA
1 ATATTAGGA-TAATTA
*
64011685 ATTTTAGGATA
1 ATATTAGGATA
64011696 TTATTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
12 9 0.29
13 1 0.03
14 1 0.03
15 11 0.35
16 9 0.29
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.43
Consensus pattern (15 bp):
ATATTAGGATAATTA
Found at i:64011715 original size:10 final size:10
Alignment explanation
Indices: 64011695--64011727 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
64011685 ATTTTAGGAT
64011695 ATTAT-TTTA
1 ATTATCTTTA
64011704 ATTATCTTTA
1 ATTATCTTTA
64011714 ATTATCTTTA
1 ATTATCTTTA
64011724 ATTA
1 ATTA
64011728 AATGTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 5 0.22
10 18 0.78
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (10 bp):
ATTATCTTTA
Found at i:64015046 original size:54 final size:54
Alignment explanation
Indices: 64014981--64015320 Score: 495
Period size: 54 Copynumber: 6.3 Consensus size: 54
64014971 TTAGTTTACC
*
64014981 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
64015035 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** *
64015089 AAATTACCAAAATACCCCTGGTTTGTAAAATTATTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
64015143 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
64015197 AAATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACC-CTTGGTTTATA
* * * * *
64015251 AAATTATCAAAATA-CCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
**
64015304 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
64015321 TCGACCTGTA
Statistics
Matches: 260, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
52 1 0.00
53 46 0.18
54 212 0.82
55 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:64015321 original size:27 final size:27
Alignment explanation
Indices: 64014981--64015393 Score: 443
Period size: 27 Copynumber: 15.3 Consensus size: 27
64014971 TTAGTTTACC
*
64014981 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
64015008 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
64015035 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
64015062 AAATTACCAAAATACCATTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
64015089 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
** * *
64015116 AAATTATTAAAATACCATTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
64015143 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
64015170 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
64015197 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
64015224 AAATTACCAAAATACCAC-TGGTTTGTA
1 AAATTACCAAAATACC-CTTGGTTTGTA
* *
64015251 AAATTATCAAAATACCC-TAGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
64015277 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
** * ***
64015304 AAATTACTGAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
*** * **
64015331 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
64015358 AAATTACCAAAGTACCATTGATTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
64015385 GAATTACCA
1 AAATTACCA
64015394 TTTTACCCTC
Statistics
Matches: 325, Mismatches: 59, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
26 25 0.08
27 299 0.92
28 1 0.00
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:64015401 original size:81 final size:80
Alignment explanation
Indices: 64015247--64015429 Score: 199
Period size: 81 Copynumber: 2.3 Consensus size: 80
64015237 ACCACTGGTT
* * * *
64015247 TGTAAAATTATCAAAATACCCTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTACT
1 TGTAAAATTATCGAAATACCCTAGCTTGTAAAATTACCAAAATACCATTGATTTATGAAATTACT
*
64015312 GAAATACCCTCGACC
66 CAAATACCCTCGACC
* * *
64015327 TGTAAAATTATTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCATTGATTTAT-AGAATTA
1 TGTAAAATTATCGAAATACCCTAG-CTTGTAAAATTACCAAAATACCATTGATTTATGA-AATTA
** **
64015391 C-CATTTTACCCTCGATT
64 CTCA-AATACCCTCGACC
**
64015408 TACAAAATTATCGAAATACCCT
1 TGTAAAATTATCGAAATACCCT
64015430 TGTAGGGTAG
Statistics
Matches: 85, Mismatches: 15, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
80 23 0.27
81 62 0.73
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (80 bp):
TGTAAAATTATCGAAATACCCTAGCTTGTAAAATTACCAAAATACCATTGATTTATGAAATTACT
CAAATACCCTCGACC
Found at i:64015449 original size:27 final size:27
Alignment explanation
Indices: 64015419--64015631 Score: 266
Period size: 27 Copynumber: 7.9 Consensus size: 27
64015409 ACAAAATTAT
*
64015419 CGAAATACCCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
64015446 CGAAATACCCCTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
64015473 CGAAATAACCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
** *
64015500 TAAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* *
64015527 CGAAATACTCTTGTAGGGTAGAAATAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
*
64015554 CGAAATACCCCTGTAGGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * * * *
64015581 TGAAATACTCCTATAAGGTAGAATTAC
1 CGAAATACCCCTGTAGGGTAGAAATAC
* * *
64015608 CGAGATACCCTTGTGGGGTA-AAAT
1 CGAAATACCCCTGTAGGGTAGAAAT
64015632 TACCATTTTA
Statistics
Matches: 160, Mismatches: 26, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 3 0.02
27 157 0.98
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (27 bp):
CGAAATACCCCTGTAGGGTAGAAATAC
Found at i:64015498 original size:81 final size:80
Alignment explanation
Indices: 64015420--64015631 Score: 309
Period size: 81 Copynumber: 2.6 Consensus size: 80
64015410 CAAAATTATC
* *
64015420 GAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACCGAAATAACCCT
1 GAAATACCC-TGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATAACCCT
64015485 GTAGGGTAGAATTACT
65 GTAGGGTAGAATTACT
* * *
64015501 AAAATACCCCTGTAGGGTAGAATTACCGAAATACTCTTGTAGGGTAGAAATACCGAAATACCCCT
1 GAAATA-CCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATAACCCT
64015566 GTAGGGTAGAATTACT
65 GTAGGGTAGAATTACT
* * * *
64015582 GAAATACTCCTATAAGGTAGAATTACCGAGATACCCTTGTGGGGTA-AAAT
1 GAAATAC-CCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAAT
64015632 TACCATTTTA
Statistics
Matches: 118, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
80 5 0.04
81 110 0.93
82 3 0.03
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (80 bp):
GAAATACCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATACCGAAATAACCCTG
TAGGGTAGAATTACT
Found at i:64016157 original size:6 final size:6
Alignment explanation
Indices: 64016148--64016268 Score: 79
Period size: 6 Copynumber: 19.8 Consensus size: 6
64016138 TTGCATTCAC
* * * *
64016148 ATTCTG ATTCTG ATTCTG -TTACTTC ATACTG ATTCTA ATTCTG GTTCTG
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATTCTG
* *
64016197 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG A-TCTG -TTACCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * *
64016246 ATTTTG ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
64016269 AGTTTTGATA
Statistics
Matches: 87, Mismatches: 18, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
5 9 0.10
6 67 0.77
7 7 0.08
8 4 0.05
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:64016244 original size:43 final size:43
Alignment explanation
Indices: 64016149--64016248 Score: 123
Period size: 43 Copynumber: 2.3 Consensus size: 43
64016139 TGCATTCACA
* *
64016149 TTCTGATTCTGATTCTGTTACTTCATACTGATTCTAATTCTGG
1 TTCTAATTCTGATTCTGTTACCTCATACTGATTCTAATTCTGG
* * *
64016192 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGA-TCT-G
1 TTCTAATTCTGATTCTGTTACCTCATACTGATTCTAATTCTGG
64016233 TTACCTAATTCTGATT
1 TT--CTAATTCTGATT
64016249 TTGATTCTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
41 3 0.06
42 3 0.06
43 45 0.88
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.48
Consensus pattern (43 bp):
TTCTAATTCTGATTCTGTTACCTCATACTGATTCTAATTCTGG
Found at i:64016274 original size:12 final size:12
Alignment explanation
Indices: 64016240--64016277 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
64016230 CTGTTACCTA
*
64016240 ATTCTGATTTTG
1 ATTCTCATTTTG
64016252 ATTCTCATTTTG
1 ATTCTCATTTTG
64016264 ATTCT-AGTTTTG
1 ATTCTCA-TTTTG
64016276 AT
1 AT
64016278 AATGTTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 1 0.04
12 23 0.96
ACGTcount: A:0.18, C:0.11, G:0.13, T:0.58
Consensus pattern (12 bp):
ATTCTCATTTTG
Found at i:64017639 original size:56 final size:56
Alignment explanation
Indices: 64017573--64017682 Score: 175
Period size: 56 Copynumber: 2.0 Consensus size: 56
64017563 GAGTGTGGAC
* **
64017573 TGTCGTGTTCTCCAAGGAATTTATTTTCATTGGTTGCTATTCTTGAAGGTAAGGTG
1 TGTCATGTTCTCCAAGGAATTTATTGCCATTGGTTGCTATTCTTGAAGGTAAGGTG
* *
64017629 TGTCATGTTCTCCAAGGAATTTATTGCCGTTGGTTGCTATTTTTGAAGGTAAGG
1 TGTCATGTTCTCCAAGGAATTTATTGCCATTGGTTGCTATTCTTGAAGGTAAGG
64017683 AGTTAATTTG
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 49 1.00
ACGTcount: A:0.20, C:0.13, G:0.25, T:0.42
Consensus pattern (56 bp):
TGTCATGTTCTCCAAGGAATTTATTGCCATTGGTTGCTATTCTTGAAGGTAAGGTG
Found at i:64018930 original size:16 final size:16
Alignment explanation
Indices: 64018909--64018940 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
64018899 TAGGATACCC
64018909 TATAAGAATCTATCCT
1 TATAAGAATCTATCCT
64018925 TATAAGAATCTATCCT
1 TATAAGAATCTATCCT
64018941 AAAAAAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.38
Consensus pattern (16 bp):
TATAAGAATCTATCCT
Found at i:64019787 original size:26 final size:26
Alignment explanation
Indices: 64019758--64019839 Score: 155
Period size: 26 Copynumber: 3.2 Consensus size: 26
64019748 TGATAAAAAT
*
64019758 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64019784 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64019810 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
64019836 TGAT
1 TGAT
64019840 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:64025055 original size:20 final size:20
Alignment explanation
Indices: 64025030--64025088 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
64025020 TTTAGAAATG
64025030 GGAGCATTACCGGAATTTAC
1 GGAGCATTACCGGAATTTAC
* *
64025050 GGAGCATTACCGGGACTTAC
1 GGAGCATTACCGGAATTTAC
*
64025070 -GAGCATTACCGAAATTTAC
1 GGAGCATTACCGGAATTTAC
64025089 AAATCAGACA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (20 bp):
GGAGCATTACCGGAATTTAC
Found at i:64027995 original size:30 final size:30
Alignment explanation
Indices: 64027961--64028021 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
64027951 TCCTTAACTC
64027961 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * * *
64027991 AAACTTTTGCATATTTACACTTTTTCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
64028021 A
1 A
64028022 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:64032325 original size:11 final size:10
Alignment explanation
Indices: 64032311--64032350 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
64032301 TTCATTTAAT
64032311 AAATTATTAAA
1 AAATTA-TAAA
64032322 AAATTAT-AA
1 AAATTATAAA
64032331 AAATTAT-AA
1 AAATTATAAA
64032340 AAATTA-AAA
1 AAATTATAAA
64032349 AA
1 AA
64032351 TAAAAAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 21 0.75
10 1 0.04
11 6 0.21
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AAATTATAAA
Found at i:64032334 original size:9 final size:8
Alignment explanation
Indices: 64032316--64032358 Score: 61
Period size: 9 Copynumber: 5.2 Consensus size: 8
64032306 TTAATAAATT
64032316 ATTAAAAA
1 ATTAAAAA
64032324 ATTATAAAA
1 ATTA-AAAA
64032333 ATTATAAAA
1 ATTA-AAAA
64032342 ATTAAAAA
1 ATTAAAAA
64032350 A-TAAAAA
1 ATTAAAAA
64032357 AT
1 AT
64032359 AGTCCAATCG
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.21
8 9 0.27
9 17 0.52
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (8 bp):
ATTAAAAA
Found at i:64039244 original size:41 final size:41
Alignment explanation
Indices: 64039178--64039580 Score: 299
Period size: 41 Copynumber: 9.9 Consensus size: 41
64039168 GTAAATATGT
* * * * *
64039178 AAACGCCGCAAAAAAAAGAGAAATAGCAGCGTTTTTGTCTA
1 AAACGCCACTAAAAACATAGAAATAGCGGCGTTTTTGTCTA
** * *
64039219 AAACGCCACTAAAAACATATCAATAGCGGCGGTTTTATCTA
1 AAACGCCACTAAAAACATAGAAATAGCGGCGTTTTTGTCTA
* **
64039260 AAACGCCACTAAAAAC-TA-ATCAATAGCGTCG-TTTTCACGT-
1 AAACGCCACTAAAAACATAGA--AATAGCGGCGTTTTTGTC-TA
* * * *
64039300 AAACGCCACTAAAAACTTGGGAAATAGTGACGTTTTTGTCCT-
1 AAACGCCACTAAAAACAT-AGAAATAGCGGCGTTTTTGT-CTA
** ** * ** *
64039342 AAACGCCACT-AAAAGTTATCAATAGCGGCATTTTCATCCA
1 AAACGCCACTAAAAACATAGAAATAGCGGCGTTTTTGTCTA
* *
64039382 AAACGCCACTAAAAAGCAGAGAAATAGCGGCGTTTTTGTC-C
1 AAACGCCACTAAAAA-CATAGAAATAGCGGCGTTTTTGTCTA
* *
64039423 AAACGCCACTAAAAAGCATAGAAATAGTGGCGTTTTTGTC-C
1 AAACGCCACTAAAAA-CATAGAAATAGCGGCGTTTTTGTCTA
* ** * *
64039464 AAACGCCAGTAAAAACAGGGAAAATAGCGGCGTTTTTATGTA
1 AAACGCCACTAAAAACATAG-AAATAGCGGCGTTTTTGTCTA
* * *
64039506 AAACACCACTAAAAATAGAGAAATAGCGGCGTTTTTGT-TA
1 AAACGCCACTAAAAACATAGAAATAGCGGCGTTTTTGTCTA
*
64039546 AAATGCCACT-AAAAC-TA-ATCAATAGCGGCGTTTTT
1 AAACGCCACTAAAAACATAGA--AATAGCGGCGTTTTT
64039581 AGAACCAAAC
Statistics
Matches: 292, Mismatches: 55, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
39 20 0.07
40 58 0.20
41 163 0.56
42 47 0.16
43 2 0.01
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.24
Consensus pattern (41 bp):
AAACGCCACTAAAAACATAGAAATAGCGGCGTTTTTGTCTA
Found at i:64039347 original size:123 final size:123
Alignment explanation
Indices: 64039207--64039559 Score: 357
Period size: 123 Copynumber: 2.9 Consensus size: 123
64039197 GAAATAGCAG
*
64039207 CGTTTTTGT-CTAAAACGCCACTAAAAACATATCAATAGCGGCGGTTTTATCTAAAACGCCACTA
1 CGTTTTTGTCCT-AAACGCCACTAAAAACATATCAATAGCGGCGATTTTATCTAAAACGCCACTA
** * * *
64039271 AAAA-CTA-ATCAATAGCGTCGTTTTCACGT-AAACGCCACTAAAAA-CTTGGGAAATAGTGA
65 AAAAGC-AGAGAAATAGCGGCGTTTT--CGTCAAACGCCACTAAAAAGCAT-AGAAATAGTGA
** *
64039330 CGTTTTTGTCCTAAACGCCACT-AAAAGTTATCAATAGCGGC-ATTTTCATCCAAAACGCCACTA
1 CGTTTTTGTCCTAAACGCCACTAAAAACATATCAATAGCGGCGATTTT-ATCTAAAACGCCACTA
* *
64039393 AAAAGCAGAGAAATAGCGGCGTTTTTGTCCAAACGCCACTAAAAAGCATAGAAATAGTGG
65 AAAAGCAGAGAAATAGCGGCGTTTTCGT-CAAACGCCACTAAAAAGCATAGAAATAGTGA
* * * * * *
64039453 CGTTTTTGTCC-AAACGCCAGTAAAAACAGGGA-AAATAGCGGCGTTTTTATGTAAAACACCACT
1 CGTTTTTGTCCTAAACGCCACTAAAAACA--TATCAATAGCGGCGATTTTATCTAAAACGCCACT
* * * *
64039516 AAAAA-TAGAGAAATAGCGGCGTTTTTGTTAAAATGCCACTAAAA
64 AAAAAGCAGAGAAATAGCGGCGTTTTCG-TCAAACGCCACTAAAA
64039560 CTAATCAATA
Statistics
Matches: 195, Mismatches: 23, Indels: 24
0.81 0.10 0.10
Matches are distributed among these distances:
121 6 0.03
122 46 0.24
123 107 0.55
124 31 0.16
125 5 0.03
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (123 bp):
CGTTTTTGTCCTAAACGCCACTAAAAACATATCAATAGCGGCGATTTTATCTAAAACGCCACTAA
AAAGCAGAGAAATAGCGGCGTTTTCGTCAAACGCCACTAAAAAGCATAGAAATAGTGA
Found at i:64041004 original size:41 final size:40
Alignment explanation
Indices: 64040959--64041053 Score: 145
Period size: 41 Copynumber: 2.4 Consensus size: 40
64040949 CATTTTTAAA
* *
64040959 AAAAGCGCCGCTAATTCCCTATTTTTAGCGTCGCTTTTTTT
1 AAAAGCGCCACTAATTCCCTATTTTTAGCGACGC-TTTTTT
*
64041000 AAAAGCGCCACTAATTCTCTATTTTTAGCGACGCTTTTTT
1 AAAAGCGCCACTAATTCCCTATTTTTAGCGACGCTTTTTT
*
64041040 AAAAACGCCACTAA
1 AAAAGCGCCACTAA
64041054 AAGTTTAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 19 0.38
41 31 0.62
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (40 bp):
AAAAGCGCCACTAATTCCCTATTTTTAGCGACGCTTTTTT
Found at i:64041370 original size:11 final size:11
Alignment explanation
Indices: 64041351--64041388 Score: 58
Period size: 11 Copynumber: 3.4 Consensus size: 11
64041341 AACAGTTTAT
*
64041351 TTTCGATTTCA
1 TTTCCATTTCA
64041362 TTTCCATTTCA
1 TTTCCATTTCA
64041373 TTTCCATTTCGA
1 TTTCCATTTC-A
64041385 TTTC
1 TTTC
64041389 ACTTCTGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
11 20 0.80
12 5 0.20
ACGTcount: A:0.16, C:0.24, G:0.05, T:0.55
Consensus pattern (11 bp):
TTTCCATTTCA
Found at i:64041380 original size:17 final size:16
Alignment explanation
Indices: 64041351--64041389 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
64041341 AACAGTTTAT
64041351 TTTCGATTTCATTTCCA
1 TTTC-ATTTCATTTCCA
*
64041368 TTTCATTTCCATTTCGA
1 TTTCATTT-CATTTCCA
64041385 TTTCA
1 TTTCA
64041390 CTTCTGTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.18, C:0.23, G:0.05, T:0.54
Consensus pattern (16 bp):
TTTCATTTCATTTCCA
Found at i:64043930 original size:9 final size:9
Alignment explanation
Indices: 64043907--64044034 Score: 103
Period size: 9 Copynumber: 13.6 Consensus size: 9
64043897 ATTGATCATT
*
64043907 ACTTAAATA
1 ACTTACATA
*
64043916 AATTACATA
1 ACTTACATA
64043925 ACTTACATA
1 ACTTACATA
* *
64043934 ACTAATATA
1 ACTTACATA
64043943 ACTTACATA
1 ACTTACATA
*
64043952 ATTTACATAACA
1 ACTTACAT---A
64043964 ACTTACATA
1 ACTTACATA
*
64043973 ACTCACATA
1 ACTTACATA
*
64043982 TCTTACATA
1 ACTTACATA
*
64043991 ATTTACATA
1 ACTTACATA
* *
64044000 ACTCACTTA
1 ACTTACATA
*
64044009 ACGTACATAACA
1 ACTTACAT---A
64044021 ACTTACATA
1 ACTTACATA
64044030 ACTTA
1 ACTTA
64044035 ACTAATACAT
Statistics
Matches: 92, Mismatches: 21, Indels: 12
0.74 0.17 0.10
Matches are distributed among these distances:
9 76 0.83
12 16 0.17
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (9 bp):
ACTTACATA
Found at i:64043987 original size:39 final size:39
Alignment explanation
Indices: 64043924--64044001 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
64043914 TAAATTACAT
*
64043924 AACTTACATAACTAATATAACTTACATAATTTACATAAC
1 AACTTACATAACTAACATAACTTACATAATTTACATAAC
* *
64043963 AACTTACATAACTCACATATCTTACATAATTTACATAAC
1 AACTTACATAACTAACATAACTTACATAATTTACATAAC
64044002 TCACTTAACG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (39 bp):
AACTTACATAACTAACATAACTTACATAATTTACATAAC
Found at i:64044001 original size:57 final size:57
Alignment explanation
Indices: 64043920--64044032 Score: 154
Period size: 57 Copynumber: 2.0 Consensus size: 57
64043910 TAAATAAATT
* * **
64043920 ACATAACTTACATAACTAATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTAACATAACTCACATAACGTACATAACAACTTACATAACTC
* * * *
64043977 ACATATCTTACATAATTTACATAACTCACTTAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTAACATAACTCACATAACGTACATAACAACTTACATAACT
64044033 TAACTAATAC
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.45, C:0.22, G:0.01, T:0.32
Consensus pattern (57 bp):
ACATAACTTACATAACTAACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:64050115 original size:43 final size:43
Alignment explanation
Indices: 64050060--64050180 Score: 170
Period size: 43 Copynumber: 2.8 Consensus size: 43
64050050 TGGAAAAAGT
* *
64050060 GCCGCTACAAGCCGTGACTTTTAGCGGTGCTTTTCCCACAAAC
1 GCCGCTAAAAGCCGTGACTTTTAGCGGCGCTTTTCCCACAAAC
* *
64050103 GCCTCTAAAAGCCGTGACTTTTAGCGGCGTTTTTCCCACAAAC
1 GCCGCTAAAAGCCGTGACTTTTAGCGGCGCTTTTCCCACAAAC
** *
64050146 GCCGCTAAAAGTTGTGACTTTTTAGCGGCGTTTTT
1 GCCGCTAAAAGCCGTGAC-TTTTAGCGGCGCTTTT
64050181 TTTTTCAATA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
43 54 0.77
44 16 0.23
ACGTcount: A:0.21, C:0.27, G:0.21, T:0.31
Consensus pattern (43 bp):
GCCGCTAAAAGCCGTGACTTTTAGCGGCGCTTTTCCCACAAAC
Found at i:64055162 original size:18 final size:16
Alignment explanation
Indices: 64055139--64055175 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
64055129 TATTATCCAT
64055139 AAAAATATATATAATTAA
1 AAAAATAT-TA-AATTAA
64055157 AAAAATATTAAATTAA
1 AAAAATATTAAATTAA
64055173 AAA
1 AAA
64055176 TAATGTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
17 2 0.11
18 8 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AAAAATATTAAATTAA
Found at i:64055184 original size:16 final size:16
Alignment explanation
Indices: 64055138--64055184 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
64055128 TTATTATCCA
64055138 TAAAAAT-ATATATAAT
1 TAAAAATAATATA-AAT
64055154 TAAAAA-AATATTAAAT
1 TAAAAATAATA-TAAAT
*
64055170 TAAAAATAATGTAAA
1 TAAAAATAATATAAA
64055185 CATATTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 22 0.81
17 5 0.19
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (16 bp):
TAAAAATAATATAAAT
Found at i:64058424 original size:130 final size:130
Alignment explanation
Indices: 64058191--64058452 Score: 524
Period size: 130 Copynumber: 2.0 Consensus size: 130
64058181 AAGGGGCCAT
64058191 CAGGCACATAAGTGATTCTCGGACATGCCGTATCATGTGACCCCCAAGGCTCATGCATGCTCATA
1 CAGGCACATAAGTGATTCTCGGACATGCCGTATCATGTGACCCCCAAGGCTCATGCATGCTCATA
64058256 TAGACACAGCAATCAAAGAACATATATTGCATTGGGAATCAAATGATTTCCACTCATTATTAAGA
66 TAGACACAGCAATCAAAGAACATATATTGCATTGGGAATCAAATGATTTCCACTCATTATTAAGA
64058321 CAGGCACATAAGTGATTCTCGGACATGCCGTATCATGTGACCCCCAAGGCTCATGCATGCTCATA
1 CAGGCACATAAGTGATTCTCGGACATGCCGTATCATGTGACCCCCAAGGCTCATGCATGCTCATA
64058386 TAGACACAGCAATCAAAGAACATATATTGCATTGGGAATCAAATGATTTCCACTCATTATTAAGA
66 TAGACACAGCAATCAAAGAACATATATTGCATTGGGAATCAAATGATTTCCACTCATTATTAAGA
64058451 CA
1 CA
64058453 TAGTATAAAG
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 132 1.00
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (130 bp):
CAGGCACATAAGTGATTCTCGGACATGCCGTATCATGTGACCCCCAAGGCTCATGCATGCTCATA
TAGACACAGCAATCAAAGAACATATATTGCATTGGGAATCAAATGATTTCCACTCATTATTAAGA
Found at i:64061323 original size:13 final size:13
Alignment explanation
Indices: 64061305--64061334 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
64061295 ATTTTTTTAA
*
64061305 TATAAAATATTTC
1 TATAAAATATTAC
64061318 TATAAAATATTAC
1 TATAAAATATTAC
64061331 TATA
1 TATA
64061335 GTGGAATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (13 bp):
TATAAAATATTAC
Found at i:64062059 original size:25 final size:24
Alignment explanation
Indices: 64061981--64062060 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 24
64061971 ACAAATAATT
*
64061981 TAAAATT-TTAAAATTTTC-AAAA
1 TAAAATTCTTAAAACTTTCAAAAA
* *
64062003 TAAAATGTCATAAAAACTAT-AAAAA
1 TAAAAT-TC-TTAAAACTTTCAAAAA
*
64062028 TAGAAATTCTTAAAAGTTTCAAACAA
1 TA-AAATTCTTAAAACTTTCAAA-AA
64062054 TAAAATT
1 TAAAATT
64062061 TTTTAAAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 11
0.73 0.10 0.18
Matches are distributed among these distances:
22 6 0.13
23 1 0.02
24 7 0.16
25 23 0.51
26 8 0.18
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (24 bp):
TAAAATTCTTAAAACTTTCAAAAA
Found at i:64065878 original size:87 final size:87
Alignment explanation
Indices: 64065772--64065942 Score: 279
Period size: 87 Copynumber: 2.0 Consensus size: 87
64065762 ACCAAGGCAC
* * ** * *
64065772 GGTCAAGTTGTTGGTGTCGTTGCCAGGGAGGTTTAGGTGTTAATTTGATTTAGTAGTAAATTGTG
1 GGTCAAGTTGTTGGCGTCGTTGCCAGGGAAGTTTAGGTACTAATATGATTTAATAGTAAATTGTG
64065837 CAGGCTAGTTAGGATAAGTCAT
66 CAGGCTAGTTAGGATAAGTCAT
*
64065859 GGTCAAGTTGTTGGCGTCGTTGCTAGGGAAGTTTAGGTACTAATATGATTTAATAGTAAATTGTG
1 GGTCAAGTTGTTGGCGTCGTTGCCAGGGAAGTTTAGGTACTAATATGATTTAATAGTAAATTGTG
64065924 CAGGCTAGTTAGGATAAGT
66 CAGGCTAGTTAGGATAAGT
64065943 AGTGAATTCG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 77 1.00
ACGTcount: A:0.25, C:0.08, G:0.31, T:0.36
Consensus pattern (87 bp):
GGTCAAGTTGTTGGCGTCGTTGCCAGGGAAGTTTAGGTACTAATATGATTTAATAGTAAATTGTG
CAGGCTAGTTAGGATAAGTCAT
Found at i:64069137 original size:10 final size:10
Alignment explanation
Indices: 64069122--64069170 Score: 64
Period size: 10 Copynumber: 4.9 Consensus size: 10
64069112 AACTTTAGCT
*
64069122 TTTATCTTCA
1 TTTATCTTTA
64069132 TTTATCTTTA
1 TTTATCTTTA
*
64069142 ATTATCTTTA
1 TTTATCTTTA
64069152 TTTAT-TTGTA
1 TTTATCTT-TA
64069162 TTTATCTTT
1 TTTATCTTT
64069171 TAGAATTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
9 2 0.06
10 30 0.88
11 2 0.06
ACGTcount: A:0.20, C:0.10, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:64071151 original size:15 final size:17
Alignment explanation
Indices: 64071125--64071156 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
64071115 TATTCTCTTT
64071125 ATTATCTTTAGA-TGGA
1 ATTATCTTTAGACTGGA
64071141 ATTAT-TTTAGACTGGA
1 ATTATCTTTAGACTGGA
64071157 CTAGTACCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (17 bp):
ATTATCTTTAGACTGGA
Found at i:64084010 original size:15 final size:15
Alignment explanation
Indices: 64083990--64084020 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
64083980 CTACTAATTC
64083990 AAACAGGATTCTTCT
1 AAACAGGATTCTTCT
64084005 AAACAGGATTCTTCT
1 AAACAGGATTCTTCT
64084020 A
1 A
64084021 TCTCTCTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (15 bp):
AAACAGGATTCTTCT
Found at i:64093081 original size:95 final size:96
Alignment explanation
Indices: 64092969--64093142 Score: 224
Period size: 96 Copynumber: 1.8 Consensus size: 96
64092959 TCGTATATTC
* * *
64092969 TATTACTATATTAAAATG-TTTCATTAAATTTGTGTCACCCTTAATCAAATCACCAACTCATTAA
1 TATTACTATATTAAAATGTTTTCATTAAATTGGTGTCACCCTCAATCAAATCACCAACTCAATAA
*
64093033 TGAATTTACTAAAAGCGCCTCATTTTTAATT
66 TGAATTTACCAAAAGCGCCTCATTTTTAATT
* * * * * * * * *
64093064 TATTATTATATTTAAATGTTTTTATTGAGTTGGTGTGACCCTCAATTAAATTACCAATTCAATAA
1 TATTACTATATTAAAATGTTTTCATTAAATTGGTGTCACCCTCAATCAAATCACCAACTCAATAA
64093129 TGAATTTACCAAAA
66 TGAATTTACCAAAA
64093143 ACCCCTGTTT
Statistics
Matches: 65, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
95 16 0.25
96 49 0.75
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (96 bp):
TATTACTATATTAAAATGTTTTCATTAAATTGGTGTCACCCTCAATCAAATCACCAACTCAATAA
TGAATTTACCAAAAGCGCCTCATTTTTAATT
Found at i:64098152 original size:15 final size:16
Alignment explanation
Indices: 64098108--64098152 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
64098098 TTTATATTAT
64098108 AATATAATCATATTTTA
1 AATATAAT-ATATTTTA
* *
64098125 AATATAATGTATTTTC
1 AATATAATATATTTTA
64098141 AAT-TAATATATT
1 AATATAATATATT
64098153 AAATAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 8 0.32
16 9 0.36
17 8 0.32
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (16 bp):
AATATAATATATTTTA
Found at i:64098738 original size:7 final size:7
Alignment explanation
Indices: 64098726--64098755 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
64098716 TATGTAATTA
64098726 ATTTTTT
1 ATTTTTT
64098733 ATTTTTT
1 ATTTTTT
*
64098740 ATTGTTT
1 ATTTTTT
64098747 ATTTTTT
1 ATTTTTT
64098754 AT
1 AT
64098756 ACAATCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (7 bp):
ATTTTTT
Found at i:64101445 original size:34 final size:34
Alignment explanation
Indices: 64101407--64101475 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
64101397 TATAAAATAT
64101407 TATTAAACATACATAATTAATTATTTATATTTAG
1 TATTAAACATACATAATTAATTATTTATATTTAG
*
64101441 TATTAAACATACATAATTATTTATTTATATTTAG
1 TATTAAACATACATAATTAATTATTTATATTTAG
64101475 T
1 T
64101476 CATATAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (34 bp):
TATTAAACATACATAATTAATTATTTATATTTAG
Found at i:64101498 original size:13 final size:12
Alignment explanation
Indices: 64101480--64101509 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
64101470 TTTAGTCATA
64101480 TAATAAATTATAT
1 TAATAAATTAT-T
64101493 TAATAAATTATT
1 TAATAAATTATT
64101505 TAATA
1 TAATA
64101510 TTTCAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATAAATTATT
Found at i:64104256 original size:14 final size:14
Alignment explanation
Indices: 64104231--64104269 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
64104221 TTTTGGTTTT
64104231 TTTCTATTTCAACTG
1 TTTCT-TTTCAACTG
*
64104246 TTTCTTTTCAACTT
1 TTTCTTTTCAACTG
*
64104260 TTTTTTTTCA
1 TTTCTTTTCA
64104270 CTTTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.15, C:0.18, G:0.03, T:0.64
Consensus pattern (14 bp):
TTTCTTTTCAACTG
Found at i:64104272 original size:13 final size:14
Alignment explanation
Indices: 64104237--64104277 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
64104227 TTTTTTTCTA
* *
64104237 TTTCAACTGTTTCT
1 TTTCAACTTTTTTT
64104251 TTTCAACTTTTTTT
1 TTTCAACTTTTTTT
64104265 TTTC-ACTTTTTTT
1 TTTCAACTTTTTTT
64104278 AAAAAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 9 0.36
14 16 0.64
ACGTcount: A:0.12, C:0.17, G:0.02, T:0.68
Consensus pattern (14 bp):
TTTCAACTTTTTTT
Found at i:64104731 original size:18 final size:17
Alignment explanation
Indices: 64104686--64104751 Score: 50
Period size: 19 Copynumber: 3.9 Consensus size: 17
64104676 TTACTCCGGT
64104686 TTAAATAA-TTAATTTA
1 TTAAATAATTTAATTTA
*
64104702 TAAAAATAAATTTAATTATA
1 T-TAAAT-AATTTAATT-TA
64104722 TTAAATAA-TT-A-TTA
1 TTAAATAATTTAATTTA
*
64104736 TTAATATAATATAATT
1 TTAA-ATAATTTAATT
64104752 ATCATAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
14 6 0.15
15 5 0.13
16 3 0.08
17 7 0.18
18 5 0.13
19 10 0.26
20 3 0.08
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTAAATAATTTAATTTA
Found at i:64104732 original size:13 final size:15
Alignment explanation
Indices: 64104714--64104745 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
64104704 AAAATAAATT
64104714 TAATTA-TATTAA-A
1 TAATTATTATTAATA
64104727 TAATTATTATTAATA
1 TAATTATTATTAATA
64104742 TAAT
1 TAAT
64104746 ATAATTATCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 6 0.35
14 6 0.35
15 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATTATTAATA
Found at i:64104760 original size:33 final size:36
Alignment explanation
Indices: 64104686--64104753 Score: 88
Period size: 33 Copynumber: 2.0 Consensus size: 36
64104676 TTACTCCGGT
*
64104686 TTAAATAATTAATTTATAAAAATAAATTTAATTATA
1 TTAAATAATTAATTTATAAAAATAAATATAATTATA
* *
64104722 TTAAATAATT-A-TTATTAATAT-AATATAATTAT
1 TTAAATAATTAATTTATAAAAATAAATATAATTAT
64104754 CATAAATTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 10 0.34
34 8 0.28
35 1 0.03
36 10 0.34
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (36 bp):
TTAAATAATTAATTTATAAAAATAAATATAATTATA
Found at i:64106599 original size:7 final size:7
Alignment explanation
Indices: 64106587--64106614 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
64106577 ATAAAATTGA
64106587 AATTTTT
1 AATTTTT
64106594 AATTTTT
1 AATTTTT
64106601 AATTTTT
1 AATTTTT
64106608 AATTTTT
1 AATTTTT
64106615 GAAAATGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
AATTTTT
Found at i:64119745 original size:11 final size:12
Alignment explanation
Indices: 64119723--64119762 Score: 57
Period size: 11 Copynumber: 3.4 Consensus size: 12
64119713 TATAAATTAC
64119723 AATATT-AATTT
1 AATATTAAATTT
64119734 AAT-TTAAATTT
1 AATATTAAATTT
64119745 AATATTAAATTTT
1 AATATTAAA-TTT
64119758 AATAT
1 AATAT
64119763 ATTTCTATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 2 0.08
11 11 0.42
12 5 0.19
13 8 0.31
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
AATATTAAATTT
Found at i:64122476 original size:20 final size:20
Alignment explanation
Indices: 64122448--64122504 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
64122438 AATACTATGA
* *
64122448 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
64122468 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
64122488 TCCATTTCATTTACTTA
1 ACCATTCCATTTACTTA
64122505 GCATAAAATT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:64127065 original size:19 final size:20
Alignment explanation
Indices: 64127041--64127078 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64127031 GGTACCACCA
64127041 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64127060 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64127079 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64127374 original size:46 final size:45
Alignment explanation
Indices: 64127307--64127474 Score: 162
Period size: 46 Copynumber: 3.6 Consensus size: 45
64127297 CGCCCCTAAG
* *
64127307 TGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCATCCATAAA
* * *
64127353 TGAACTCGGACTCGACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCATAAA
* * * * *
64127400 CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCATCCATAAA
64127446 TGAACTCGGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGTTCGG
64127475 ATGCTCAACC
Statistics
Matches: 99, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 53 0.54
47 27 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCATCCATAAA
Found at i:64127416 original size:93 final size:93
Alignment explanation
Indices: 64127308--64127478 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
64127298 GCCCCTAAGT
* * * * *
64127308 GAACTTGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCGACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64127373 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
64127401 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
64127466 CGAGTTCGGATGC
66 CGAGTTCGGATGC
64127479 TCAACCATCC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:64133350 original size:19 final size:20
Alignment explanation
Indices: 64133326--64133363 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
64133316 GGTACCACCA
64133326 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
64133345 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
64133364 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:64133707 original size:46 final size:46
Alignment explanation
Indices: 64133587--64133714 Score: 154
Period size: 46 Copynumber: 2.8 Consensus size: 46
64133577 TAACCCGCCC
64133587 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTACAT
* * * * *
64133635 CTCA-CGAACTCGAACTCAACTCAACGAGTTCGGA-C-ATTTGCAT
1 CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
64133678 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 -C-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
64133715 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
43 6 0.09
44 2 0.03
45 2 0.03
46 28 0.41
47 28 0.41
48 3 0.04
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
CTAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTACAT
Found at i:64133733 original size:46 final size:45
Alignment explanation
Indices: 64133590--64133733 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
64133580 CCCGCCCCTA
64133590 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATCT
* * * * *
64133637 CA-CGAACTCGAACTCAACTCAACGAGTTCGGACAT-TTGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCT-CAACCATCT
64133683 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCAT-CT
64133729 AGTGA
1 AGTGA
64133734 CATGTCACTT
Statistics
Matches: 77, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
44 8 0.10
45 2 0.03
46 32 0.42
47 30 0.39
48 1 0.01
49 3 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCT
Found at i:64134753 original size:42 final size:42
Alignment explanation
Indices: 64134694--64134789 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
64134684 ATGAGTTTTT
* * *
64134694 GTTTAGCTCTTACGAGCTTTAGTTTAA-CCTTGATGGGTTTCC
1 GTTTAGCTCTTACGAGCTTCAGTTCAACCCTT-ATGGGTTTCA
** *
64134736 GTTTAGCTCTTTTGAGCTTCCGTTCAACCCTTATGGGTTTCA
1 GTTTAGCTCTTACGAGCTTCAGTTCAACCCTTATGGGTTTCA
*
64134778 GTTTAGCACTTA
1 GTTTAGCTCTTA
64134790 TGTGCTTTCG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
42 41 0.91
43 4 0.09
ACGTcount: A:0.17, C:0.21, G:0.20, T:0.43
Consensus pattern (42 bp):
GTTTAGCTCTTACGAGCTTCAGTTCAACCCTTATGGGTTTCA
Found at i:64134806 original size:42 final size:43
Alignment explanation
Indices: 64134721--64134806 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
64134711 TTTAGTTTAA
* * * *
64134721 CCTTGATGGGTTTCCGTTTAGCTCTTTTGAGCTTCCGTTCAAC
1 CCTTGATGGGTTTCAGTTTAGCACTTATGAGCTTCCGTGCAAC
* *
64134764 CCTT-ATGGGTTTCAGTTTAGCACTTATGTGCTTTCGTGCAAC
1 CCTTGATGGGTTTCAGTTTAGCACTTATGAGCTTCCGTGCAAC
64134806 C
1 C
64134807 TTTGGGCTTT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 33 0.89
43 4 0.11
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.41
Consensus pattern (43 bp):
CCTTGATGGGTTTCAGTTTAGCACTTATGAGCTTCCGTGCAAC
Found at i:64138568 original size:44 final size:44
Alignment explanation
Indices: 64138483--64138568 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
64138473 CATAGGATTT
** * *
64138483 CGTGTAAGACCATGTCTGGGATGTTGGCATCGATTTCTATTTTA
1 CGTGTAAGACCATGTCTGGGACATCGGCATCGATCTCTATTTTA
64138527 CGTGTAAGACCATGTCTGGGACATCGGCATCGTATCT-TATTT
1 CGTGTAAGACCATGTCTGGGACATCGGCATCG-ATCTCTATTT
64138569 CGTATAAGAC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
44 34 0.92
45 3 0.08
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.36
Consensus pattern (44 bp):
CGTGTAAGACCATGTCTGGGACATCGGCATCGATCTCTATTTTA
Found at i:64145457 original size:16 final size:16
Alignment explanation
Indices: 64145436--64145466 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
64145426 GAATAGTTAG
64145436 GATACATATGTCATGT
1 GATACATATGTCATGT
64145452 GATACATATGTCATG
1 GATACATATGTCATG
64145467 ACATAGGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (16 bp):
GATACATATGTCATGT
Found at i:64148750 original size:15 final size:15
Alignment explanation
Indices: 64148725--64148757 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
64148715 AACCATTTCA
64148725 AAAAGAAAAGAAGAAC
1 AAAAGAAAAGAA-AAC
64148741 AAAA-AAAAGAAAAC
1 AAAAGAAAAGAAAAC
64148755 AAA
1 AAA
64148758 GAGATGCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 7 0.41
16 4 0.24
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (15 bp):
AAAAGAAAAGAAAAC
Found at i:64148821 original size:15 final size:15
Alignment explanation
Indices: 64148801--64148831 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
64148791 AGCAGTAACC
64148801 AAAATAAAAATAATA
1 AAAATAAAAATAATA
*
64148816 AAAATAAAACTAATA
1 AAAATAAAAATAATA
64148831 A
1 A
64148832 TTTTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.19
Consensus pattern (15 bp):
AAAATAAAAATAATA
Found at i:64149671 original size:35 final size:35
Alignment explanation
Indices: 64149582--64149679 Score: 110
Period size: 35 Copynumber: 2.8 Consensus size: 35
64149572 ACTTACGAAT
* *
64149582 AAGAG-TACATCCCTCCAAAACACACCAATGCTCAT
1 AAGAGCTAC-TCCCTCCGAAACACACCAATGCTCAA
* * *
64149617 AAGAGCTACTCCAAT-CGAAACGCACCAATGTTCAA
1 AAGAGCTACTCC-CTCCGAAACACACCAATGCTCAA
*
64149652 AAGAGCTAGTCCCTCCGAAACACACCAA
1 AAGAGCTACTCCCTCCGAAACACACCAA
64149680 ATAGAGAGTA
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
34 1 0.02
35 47 0.90
36 4 0.08
ACGTcount: A:0.40, C:0.33, G:0.12, T:0.15
Consensus pattern (35 bp):
AAGAGCTACTCCCTCCGAAACACACCAATGCTCAA
Found at i:64150765 original size:18 final size:17
Alignment explanation
Indices: 64150742--64150775 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
64150732 TTAAGTCATC
64150742 CAATTATAATTATTTAAT
1 CAATTATAATT-TTTAAT
*
64150760 CAATTATCATTTTTAA
1 CAATTATAATTTTTAA
64150776 ATTAATAGTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (17 bp):
CAATTATAATTTTTAAT
Found at i:64157494 original size:23 final size:24
Alignment explanation
Indices: 64157467--64157511 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
64157457 CCTTTTTAAT
*
64157467 AAAAATATTTAAAA-TTTAAAAGA
1 AAAAATATATAAAATTTTAAAAGA
64157490 AAAAATATATAAAATTTTAAAA
1 AAAAATATATAAAATTTTAAAA
64157512 TTTTAAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (24 bp):
AAAAATATATAAAATTTTAAAAGA
Found at i:64157519 original size:25 final size:25
Alignment explanation
Indices: 64157491--64157549 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
64157481 TTTAAAAGAA
* *
64157491 AAAATATATAA-AATTTTAAAATTTT
1 AAAATATATAAGAATTAT-AAATTAT
*
64157516 AAAATATAAAAGAATTATAAATTAT
1 AAAATATATAAGAATTATAAATTAT
64157541 AAAATATAT
1 AAAATATAT
64157550 GCATATAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 24 0.83
26 5 0.17
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (25 bp):
AAAATATATAAGAATTATAAATTAT
Found at i:64157536 original size:18 final size:18
Alignment explanation
Indices: 64157510--64157544 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
64157500 AAAATTTTAA
*
64157510 AATTTTAAAATATAAAAG
1 AATTATAAAATATAAAAG
*
64157528 AATTATAAATTATAAAA
1 AATTATAAAATATAAAA
64157545 TATATGCATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (18 bp):
AATTATAAAATATAAAAG
Found at i:64158851 original size:2 final size:2
Alignment explanation
Indices: 64158831--64161921 Score: 1666
Period size: 2 Copynumber: 1559.0 Consensus size: 2
64158821 TTAGAGCTAG
* *
64158831 AT AT AT A- AT AT GAT CT AT AT AT AT AT GAT AC AT AT AT AT A- AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT
* *
64158873 AT AT AT AG AT AT GAT AT A- AT AG AT A- AT AT AT AT AT CAT AT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
* * * * * *
64158915 AT AT AT GT AT GT AT GT AT AT CAT AG AT AT AG AT AT AT AG AT AT
1 AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT
* * * * *
64158958 CT AT AT AT AT GAT AT AT AT CT AT GAT AT AC AT AC AT AC AT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
* *
64159002 AT AT AT GAT AT AT AT -T AT CT AT -T AT AT CAT AT CT AT AT AT AT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
* * *
64159044 AT CT AT AT AT A- ACT TT CAT A- AT AT AT AT -T AT CT AT AT AT AT
1 AT AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
*
64159085 AT AT AT AT AT GAT AT AT -T CT AT AT AT AT AT -T AT AT AT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
64159126 AG AT AT CT AT AT AT AT AT GT AT CT AT AT AT AT GAT AT AT GAT CT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT -AT AT
*
64159170 AT AT AT AT AT AT AT AG AT AT GAT AT A- AT AT AT GA- AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT -AT AT AT AT AT
* *
64159211 AT AT AT CAT AT AT AT A- ACT TT CA- AT A- AT AT AT AT CT AT AT
1 AT AT AT -AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT
* * *
64159251 AT AT AT AG AT A- AT AT AT AT AT AT AG AT CAT AT AT GT CAT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT
* *
64159294 AT AT AT A- AT A- AT AT AT AT -T AT -T GAA AGT -T AT AT AT AG AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT A-T AT AT AT AT AT AT
* * *
64159333 AT CT AT AT AT AT AT AT AT AT CT AT AT CT AT AT AT GAT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT
* * * * *
64159376 GAT CT AT AT AT AT AT AT AG AT AT GT CAT A- AT AT AT AT AG AT AG
1 -AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
* * *
64159419 AT AT AT AT AT -T AT GAA AGT -T AT AT AT AG AT AT CT AT AT AT AT
1 AT AT AT AT AT AT AT -AT A-T AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
64159461 GAT AT AT AT AT CT AT AT CT AT AT AG AT AT AT AT GAT CT AT AT AT
1 -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
* * *
64159505 AT AT AT AT AG AT AT GAT AT A- AT AG AT A- AT AT AT AT AT CT -T
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
64159545 AT AT A- ACT TT CAT A- AT -T AT AT CT AT AT -T AT AT AT AT AT GAC
1 AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT
* * *
64159586 AT AT AT GAT CT AT AT AT AT AT -T AT -T AT CT AT AT AT AT AG AT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
64159627 AT CT AT -T AT AT -T AT AG AT -T CT AT AT AT AT GAT AT AT AT GAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT
* * *
64159668 CT AT AT AT AT AT AG AT AT GAT AT AT AG AT A- AT AT AT AT AT CAT
1 AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT -AT
* * * *
64159711 AT AT A- ACT TT CA- AT AT AT AT AT CT AT CT AT AT A- AT AT AT GAC
1 AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT
* *
64159753 AT AT AT GAT CT AT AT AT AT -T AT AT AT AGT AT CT AT AT AT AT AT
1 AT AT AT -AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT
* *
64159796 GAT AT AT -T GAT CT A- AT AT AT AT AT AG AT AT GAT AT A- AT A-
1 -AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
* *
64159835 AT A- AT AT AT AT CAT AT AT AT ACT TT CAT A- AT AT A- AT CT AT
1 AT AT AT AT AT AT -AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT
* * *
64159875 CT AT AT AT AT AT AT GAC AT AT AT GAT CT -T AT AT -T AT -T AT -T
1 AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
* * *
64159915 AT -T AT AT AT AT CT AT AT AT -T AT AT A- ACT TT CAT -T AT AT CT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT -AT AT AT AT AT
* *
64159955 AT -T AT AT AT AT AT AT GA- AT AT AT GAT CT AT AT AT AT AT AG AT
1 AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT AT AT AT AT AT AT
* * *
64159997 CAT AT AT AT AT AT AT AT AT AT AG AT AG AT AT AT -T AT -T GAA AGT
1 -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT A-T
*
64160040 -T AT AT AT AT GAT AT AT A- AT AG AT A- AT AT AT AT AT CAT AT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
* * * *
64160081 AT A- ACT TT CA- AT A- AT AT AT CT AT CT AT CT AT AT AT AT AT AT
1 AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
64160122 GAT AT AT AT GAT CT AT AT AT AT AT AG AT AT AT AT AT CAT AT AT
1 -AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
* * * *
64160165 AG AT AT CT AT A- AT A- ACT TT CA- AT A- AT AT AT AT AT AT AG AT
1 AT AT AT AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT
*
64160205 AT A- AT A- AT A- AT A- AT AT AT A- AT AT AT AT AG AT AT AT AGT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T
*
64160243 CAT AT AT AT AT AT AG AT AT AT AT AT AT -T AT GA- AT -T AT AT AT
1 -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
* *
64160284 AG AT AT AT A- AT AG AT A- AT AT AT CAT AT AT A- ACT -T AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT A-T AT AT AT AT
* *
64160323 AT -T AT AT CT ACT AT A- AT AT GA- AT AT GAT CT AT AT AT AT A-
1 AT AT AT AT AT A-T AT AT AT AT -AT AT AT -AT AT AT AT AT AT AT
* *
64160362 AC AT AT AT AT A- AT AT AT A- AT AT A- AT AT AT AT -T AT AG AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
64160400 AT AT AT A- AT -T CA- AT A- AT AT AT AT AG AT AT GAT AT A- AT AG
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
* * *
64160439 AT A- AT AT AT AT AT CAT AT AT AT AT GT AT AC AT AT CAT AG AT AT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT -AT AT AT AT
* * *
64160482 AT AT CAT AT AT AT AG AT AT CT AT AT AT -T AT AT CT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
64160524 CAT AT AT AT AT GT AT AT AT ACT A- AT AT AT AT CAT AT -T AT AG
1 -AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT -AT AT AT AT AT
* * * *
64160565 AT AT CT AT AT AT CT AT AT CT AT AT -T AT AT CAT AT -T AT AT AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
* * * *
64160606 AT CAT AT AT GT CA- AT AT AT AT AT AT AG AT AG AT AG AT AT AT -T
1 AT -AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
64160648 AT -T GA- AGT -T AT AT AT AT GAT AT AT A- AT AGT A- AT AT AT AT
1 AT AT -AT A-T AT AT AT AT AT -AT AT AT AT AT A-T AT AT AT AT AT
* * * * * *
64160687 AT CT AT AT AT A- ACT TT CA- AT AA AT AT CT AT CT AT CT AT AT AT
1 AT AT AT AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT AT
*
64160729 AT AT AT GAT AT -T AT AT GAT A- AT AT AT -T A- AT CAT AT TT AT
1 AT AT AT -AT AT AT AT AT -AT AT AT AT AT AT AT AT -AT AT AT AT
* *
64160768 CAT AT -T AT AT AT GAT AT AT AT AT CAT AT AT AT AG AT AT CT AT
1 -AT AT AT AT AT AT -AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
* * *
64160810 AT AT A- ACT TT CA- AT AA AT AT AT AT AT AG AT AT GAT AT A- AT
1 AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT
* * *
64160850 AG AT AT AT A- AT CAT AT AT AT AT AT AG AT CAT AT AT GT CAT AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT
*
64160892 AT AT AT -T AT AG AT AT AT AT AT AT AT GA- AGT -T AT AT AT GAT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT A-T AT AT AT AT -AT
*
64160932 AT AT A- AT AG AT A- AT A- AT AT CAT AT AT A- ACT -T A- AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT A-T AT AT AT AT AT
* *
64160969 AT -T AT AT CT AT AT AT AT AT GAT AT AT -T GAT CT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT AT AT AT AT
* *
64161011 A- AT AT AT AC AT AT A- AT A- AT A- AA AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
64161048 AT A- AT A- AT TT A- AT A- AT AT AA AT GAT AT A- AA AT A- AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT
* * *
64161085 AT CAT A- AT AT AGT AT AC A- AT AT AG AT A- AT CAT AT A- AT AG
1 AT -AT AT AT AT A-T AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
* * * *
64161124 AT ACT AT AT CT AT AT CT AT AT AT AT AT A- AT AT AT GT AA AT A-
1 AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
64161165 AT AT AT AT CAT AT A- AT AA AT CT AT AT CT AT AT AT AT AT AT AT
1 AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
64161207 AT AT AT TT CT AT -T AT A- AT AT CAT AT AT AT AG AT AT AT AT AG
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
* * * * * * *
64161248 AT AT A- AT A- AA AA AT AA AA AA AA AT AG AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * *
64161288 CAT AT CT AT AG AT AT CT AT AT AT CAT AT AT AT -T AT CAT AT CAT
1 -AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT -AT AT -AT
*
64161331 AT AT CAT AT AT AT AT AT AG AT CAT AT AT AT CAT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT AT AT AT
* * * *
64161374 AT AG AT AT AT AT AT CAT AT AT AT AG AT AT CT AT AT AT A- ACT TT
1 AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
*
64161417 CA- AT A- AT AT AT AT AT CAT AT AT AT AT AT AT AT AG AT CAT AT
1 -AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT -AT AT
* * * *
64161458 AT GT CAT AT AT AT AT AT AT AG AT AG AT AT AT AT AT -T AT -T GAA
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT
* *
64161500 AGT -T AT AT AT AG AT AT AT A- AT AG AT AT AT AT AT AT CAT AT AT
1 A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
* * *
64161542 AT A- ACT TT CA- AT A- AT AT AT AT AT CT AT CT AT AT AT AT AT AT
1 AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
64161583 GAT AT AT AT GAT CT AT AT AT AT AT AG AT CAT AT AT AT CAT AT AT
1 -AT AT AT AT -AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT AT
* * * *
64161627 AT A- AT -T AT AT AG AT AG AT AT AT CAT AT AT AT AG AT AT CT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
* * *
64161668 AT AT A- ACT TT CA- AT A- AT AT AT AT AG AT AT GAT AT A- AT AG
1 AT AT AT A-T AT -AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
*
64161707 AT A- AT AT AT AT AT AT AT AT AT CAT AT AT AT AT AT GT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT
* * * *
64161749 AT CAT AG AT AT AT AT CAT AT AT AT AG AT AT CT AT AT AT CT AT AT
1 AT -AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
64161793 CT AT AT AT AT CAT AT AT AT -T AT CT AT AT CAT AT AT AT CAT AT
1 AT AT AT AT AT -AT AT AT AT AT AT AT AT AT -AT AT AT AT -AT AT
* * *
64161835 -T AT AT AT AG AT AT AT -T AG AT AT GAT AT A- AT AG AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT
* *
64161874 AT A- AT AT AT -T CAT AT AT AT AT AT AT GT AT AT AT AT CAT AG AT
1 AT AT AT AT AT AT -AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT
64161916 AT AT AT
1 AT AT AT
64161922 CANNNNNNNN
Statistics
Matches: 2359, Mismatches: 395, Indels: 670
0.69 0.12 0.20
Matches are distributed among these distances:
1 181 0.08
2 1962 0.83
3 215 0.09
4 1 0.00
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.44
Consensus pattern (2 bp):
AT
Found at i:64158865 original size:11 final size:9
Alignment explanation
Indices: 64158831--64161921 Score: 912
Period size: 9 Copynumber: 335.7 Consensus size: 9
64158821 TTAGAGCTAG
64158831 ATATATAAT
1 ATATATAAT
64158840 ATGATCTATATAT
1 AT-A--TATA-AT
64158853 ATATGATACAT
1 ATAT-ATA-AT
64158864 ATATATAAT
1 ATATATAAT
64158873 ATATATAGAT
1 ATATATA-AT
64158883 ATGATATAAT
1 AT-ATATAAT
*
64158893 AGATA-ATAT
1 ATATATA-AT
*
64158902 ATATATCAT
1 ATATATAAT
64158911 ATATAT-AT
1 ATATATAAT
* *
64158919 ATGTATGTAT
1 ATATAT-AAT
* *
64158929 GTATATCAT
1 ATATATAAT
*
64158938 AGATATAGAT
1 ATATATA-AT
*
64158948 ATATA-GAT
1 ATATATAAT
*
64158956 ATCTAT-AT
1 ATATATAAT
64158964 ATATGATATAT
1 ATAT-ATA-AT
* *
64158975 ATCTATGAT
1 ATATATAAT
*
64158984 ATACATACAT
1 ATATATA-AT
*
64158994 ACATAT-AT
1 ATATATAAT
*
64159002 ATATATGAT
1 ATATATAAT
64159011 ATATAT--T
1 ATATATAAT
* *
64159018 ATCTATTAT
1 ATATATAAT
*
64159027 ATCATATCTAT
1 AT-ATAT-AAT
*
64159038 ATATATATCT
1 ATATATA-AT
64159048 ATATATAACT
1 ATATATAA-T
64159058 -T-TCATAAT
1 ATAT-ATAAT
*
64159066 ATATATTAT
1 ATATATAAT
*
64159075 CTATAT-AT
1 ATATATAAT
64159083 ATATATATAT
1 ATATATA-AT
*
64159093 ATGATATATT
1 AT-ATATAAT
*
64159103 CTATAT-AT
1 ATATATAAT
64159111 ATAT-TATAT
1 ATATATA-AT
64159120 ATATATAGAT
1 ATATATA-AT
*
64159130 ATCTAT-AT
1 ATATATAAT
*
64159138 ATATATGTAT
1 ATATAT-AAT
*
64159148 CTATATATAT
1 ATATATA-AT
*
64159158 GATATATGAT
1 -ATATATAAT
*
64159168 CTATATATAT
1 ATATATA-AT
64159178 ATATATAGAT
1 ATATATA-AT
64159188 ATGATATAAT
1 AT-ATATAAT
64159198 ATATGAATAAT
1 ATAT--ATAAT
64159209 ATATATATCAT
1 ATATATA--AT
64159220 ATATATAACT
1 ATATATAA-T
*
64159230 TTCA-ATAAT
1 AT-ATATAAT
*
64159239 ATATAT-CT
1 ATATATAAT
64159247 ATATAT-AT
1 ATATATAAT
*
64159255 ATAGATAAT
1 ATATATAAT
64159264 ATATAT-AT
1 ATATATAAT
* *
64159272 ATAGATCAT
1 ATATATAAT
* *
64159281 ATATGTCAT
1 ATATATAAT
64159290 ATATAT-AT
1 ATATATAAT
64159298 ATA-ATAAT
1 ATATATAAT
64159306 ATATAT--T
1 ATATATAAT
64159313 AT-TGA-AAGTT
1 ATAT-ATAA--T
64159323 ATATATAGAT
1 ATATATA-AT
*
64159333 ATCTAT-AT
1 ATATATAAT
64159341 ATATATATAT
1 ATATATA-AT
* *
64159351 ATCTATATCT
1 ATATATA-AT
*
64159361 ATATATGAT
1 ATATATAAT
*
64159370 ATATATGAT
1 ATATATAAT
*
64159379 CTATAT-AT
1 ATATATAAT
64159387 ATATATAGAT
1 ATATATA-AT
*
64159397 ATGTCATAAT
1 ATAT-ATAAT
64159407 ATATATAGAT
1 ATATATA-AT
*
64159417 AGATAT-AT
1 ATATATAAT
64159425 ATATTATGAAAGTT
1 ATA-TAT--AA--T
64159439 ATATATAGAT
1 ATATATA-AT
*
64159449 ATCTAT-AT
1 ATATATAAT
64159457 ATATGATATAT
1 ATAT-ATA-AT
*
64159468 ATATCTATAT
1 ATATATA-AT
*
64159478 CTATATAGAT
1 ATATATA-AT
*
64159488 ATATATGAT
1 ATATATAAT
*
64159497 CTATATATAT
1 ATATATA-AT
64159507 ATATATAGAT
1 ATATATA-AT
64159517 ATGATAT-A-
1 AT-ATATAAT
*
64159525 ATAGATAAT
1 ATATATAAT
64159534 ATATAT-AT
1 ATATATAAT
*
64159542 CTTATATAACT
1 -ATATATAA-T
64159553 -T-TCATAAT
1 ATAT-ATAAT
*
64159561 -TATAT-CT
1 ATATATAAT
64159568 ATAT-TATAT
1 ATATATA-AT
64159577 ATATATGACAT
1 ATATAT-A-AT
*
64159588 ATATGATCTAT
1 ATAT-AT-AAT
*
64159599 ATATATATT
1 ATATATAAT
*
64159608 AT-TATCTAT
1 ATATAT-AAT
64159617 ATATATAGAT
1 ATATATA-AT
* *
64159627 ATCTATTAT
1 ATATATAAT
64159636 AT-TATAGAT
1 ATATATA-AT
*
64159645 -TCTAT-AT
1 ATATATAAT
64159652 ATATGAT-AT
1 ATAT-ATAAT
*
64159661 ATATGAT-CT
1 ATAT-ATAAT
64159670 ATATATATAT
1 ATATATA-AT
*
64159680 AGATATGATAT
1 ATATAT-A-AT
*
64159691 ATAGATAAT
1 ATATATAAT
64159700 ATATAT-AT
1 ATATATAAT
64159708 CATATATAACT
1 -ATATATAA-T
*
64159719 TTCA-AT-AT
1 AT-ATATAAT
*
64159727 ATATATCTAT
1 ATATAT-AAT
*
64159737 CTATATAAT
1 ATATATAAT
*
64159746 ATATGA-CAT
1 ATAT-ATAAT
*
64159755 ATATGAT-CT
1 ATAT-ATAAT
*
64159764 ATATATATT
1 ATATATAAT
*
64159773 ATATATAGT
1 ATATATAAT
*
64159782 ATCTAT-AT
1 ATATATAAT
*
64159790 ATATATGAT
1 ATATATAAT
*
64159799 ATAT-TGAT
1 ATATATAAT
*
64159807 CTA-AT-AT
1 ATATATAAT
64159814 ATATATAGAT
1 ATATATA-AT
64159824 ATGATAT-A-
1 AT-ATATAAT
64159832 ATA-ATAAT
1 ATATATAAT
*
64159840 ATATATCAT
1 ATATATAAT
*
64159849 ATATATACT
1 ATATATAAT
64159858 -T-TCATAAT
1 ATAT-ATAAT
*
64159866 ATA-AT-CT
1 ATATATAAT
*
64159873 ATCTATATAT
1 ATATATA-AT
* *
64159883 ATATATGAC
1 ATATATAAT
*
64159892 ATATATGAT
1 ATATATAAT
* *
64159901 CT-TATATT
1 ATATATAAT
*
64159909 AT-TATTAT
1 ATATATAAT
64159917 -TATAT-AT
1 ATATATAAT
*
64159924 ATCTAT-AT
1 ATATATAAT
64159932 ATTATATAACT
1 A-TATATAA-T
*
64159943 TTCAT-TATAT
1 AT-ATATA-AT
*
64159953 CTATTATATAT
1 ATA-TATA-AT
64159964 ATATATGAAT
1 ATATAT-AAT
*
64159974 ATATGAT-CT
1 ATAT-ATAAT
64159983 ATATAT-AT
1 ATATATAAT
* *
64159991 ATAGATCAT
1 ATATATAAT
64160000 ATATAT-AT
1 ATATATAAT
64160008 ATATAT-AT
1 ATATATAAT
*
64160016 ATAGATAGAT
1 ATATATA-AT
64160026 ATATTATTGAA-
1 ATA-TA-T-AAT
64160037 AGTTATATATAT
1 A--TATATA-AT
64160049 GATATATAAT
1 -ATATATAAT
*
64160059 AGATA-ATAT
1 ATATATA-AT
*
64160068 ATATATCAT
1 ATATATAAT
64160077 ATATATAACT
1 ATATATAA-T
*
64160087 TTCA-ATAAT
1 AT-ATATAAT
* *
64160096 ATATCTATCT
1 ATATATA-AT
*
64160106 ATCTATATAT
1 ATATATA-AT
*
64160116 ATATATGAT
1 ATATATAAT
*
64160125 ATATATGAT
1 ATATATAAT
*
64160134 CTATAT-AT
1 ATATATAAT
*
64160142 ATATA-GAT
1 ATATATAAT
64160150 ATATAT-AT
1 ATATATAAT
64160158 CATATATAGAT
1 -ATATATA-AT
*
64160169 ATCTATAAT
1 ATATATAAT
*
64160178 A-ACTTTCAAT
1 ATA-TAT-AAT
64160188 A-ATAT-AT
1 ATATATAAT
64160195 ATATATAGAT
1 ATATATA-AT
64160205 ATAATAATAAT
1 AT-AT-ATAAT
64160216 AATATATAAT
1 -ATATATAAT
64160226 ATATATAGAT
1 ATATATA-AT
*
64160236 ATATAGTCAT
1 ATATA-TAAT
64160246 ATATATATAT
1 ATATATA-AT
*
64160256 AGATATATAT
1 ATATATA-AT
64160266 ATATTATGAATT
1 ATA-TAT-AA-T
64160278 ATATATAGAT
1 ATATATA-AT
64160288 ATATAATAGAT
1 ATAT-ATA-AT
64160299 A-ATAT-AT
1 ATATATAAT
64160306 CATATATAACT
1 -ATATATAA-T
*
64160317 -TATAATATT
1 ATAT-ATAAT
* *
64160326 ATATCTACT
1 ATATATAAT
64160335 ATAATATGAAT
1 AT-ATAT-AAT
*
64160346 ATGATCT-AT
1 AT-ATATAAT
*
64160355 ATATATAAC
1 ATATATAAT
64160364 ATATAT-AT
1 ATATATAAT
64160372 AATATATAAT
1 -ATATATAAT
64160382 ATA-AT-AT
1 ATATATAAT
64160389 ATATTATAGAT
1 ATA-TATA-AT
64160400 ATATATAAT
1 ATATATAAT
64160409 -TCA-ATAAT
1 AT-ATATAAT
64160417 ATATATAGAT
1 ATATATA-AT
64160427 ATGATAT-A-
1 AT-ATATAAT
*
64160435 ATAGATAAT
1 ATATATAAT
64160444 ATATAT-AT
1 ATATATAAT
64160452 CATATAT-AT
1 -ATATATAAT
*
64160461 ATGTATACAT
1 ATATATA-AT
*
64160471 ATCATA-GAT
1 AT-ATATAAT
*
64160480 ATATATCAT
1 ATATATAAT
64160489 ATATATAGAT
1 ATATATA-AT
*
64160499 ATCTAT-AT
1 ATATATAAT
64160507 AT-TAT-AT
1 ATATATAAT
*
64160514 CTATAT-AT
1 ATATATAAT
64160522 ATCATAT-AT
1 AT-ATATAAT
*
64160531 ATATGT-AT
1 ATATATAAT
64160539 ATATACTAAT
1 ATATA-TAAT
*
64160549 ATATATCAT
1 ATATATAAT
64160558 AT-TATAGAT
1 ATATATA-AT
*
64160567 ATCTAT-AT
1 ATATATAAT
*
64160575 ATCTAT-AT
1 ATATATAAT
* *
64160583 CTATATTAT
1 ATATATAAT
*
64160592 ATCATATTAT
1 AT-ATATAAT
* *
64160602 ATAGATCAT
1 ATATATAAT
*
64160611 ATATGTCAAT
1 ATATAT-AAT
64160621 ATATAT-AT
1 ATATATAAT
*
64160629 ATAGATAGAT
1 ATATATA-AT
*
64160639 AGATAT-AT
1 ATATATAAT
64160647 -TAT-TGAAGT
1 ATATAT-AA-T
64160656 -TATAT-AT
1 ATATATAAT
64160663 ATGATAT-AT
1 AT-ATATAAT
64160672 A-ATAGTAAT
1 ATATA-TAAT
*
64160681 ATATATATCT
1 ATATATA-AT
64160691 ATATATAACT
1 ATATATAA-T
*
64160701 TTCA-ATAAAT
1 AT-ATAT-AAT
* *
64160711 ATCTATCTAT
1 ATATAT-AAT
*
64160721 CTATATATAT
1 ATATATA-AT
*
64160731 ATATGATATT
1 ATAT-ATAAT
64160741 ATATGATAAT
1 ATAT-ATAAT
64160751 ATAT-TAAT
1 ATATATAAT
64160759 CATAT-T--T
1 -ATATATAAT
*
64160766 ATCATATTAT
1 AT-ATATAAT
64160776 ATATGAT-AT
1 ATAT-ATAAT
*
64160785 ATATATCAT
1 ATATATAAT
64160794 ATATATAGAT
1 ATATATA-AT
*
64160804 ATCTAT-AT
1 ATATATAAT
*
64160812 ATAACTTTCAAT
1 AT-A-TAT-AAT
64160824 A-A-AT-AT
1 ATATATAAT
64160830 ATATATAGAT
1 ATATATA-AT
64160840 ATGATATAAT
1 AT-ATATAAT
64160850 AGATATATAAT
1 --ATATATAAT
64160861 CATATATATAT
1 -ATATATA-AT
* *
64160872 ATAGATCAT
1 ATATATAAT
*
64160881 ATATGTCATAT
1 ATATAT-A-AT
*
64160892 ATATATTAT
1 ATATATAAT
*
64160901 AGATATATAT
1 ATATATA-AT
64160911 ATATATGAAGT
1 ATATAT-AA-T
64160922 -TATAT-AT
1 ATATATAAT
64160929 GATATATAAT
1 -ATATATAAT
*
64160939 AGATAATAAT
1 ATAT-ATAAT
64160949 ATCATAT-AT
1 AT-ATATAAT
64160958 A-ACT-TAAT
1 ATA-TATAAT
*
64160966 A-ATATTAT
1 ATATATAAT
*
64160974 ATCTAT-AT
1 ATATATAAT
*
64160982 ATATATGAT
1 ATATATAAT
*
64160991 ATAT-TGAT
1 ATATATAAT
*
64160999 CTATAT-AT
1 ATATATAAT
64161007 ATATAATATAT
1 ATAT-ATA-AT
*
64161018 ACATATAAT
1 ATATATAAT
*
64161027 A-ATAAAAT
1 ATATATAAT
64161035 ATATAT-AT
1 ATATATAAT
64161043 AATATATAAT
1 -ATATATAAT
*
64161053 A-ATTTAAT
1 ATATATAAT
64161061 A-ATATAA-
1 ATATATAAT
64161068 ATGATATAA-
1 AT-ATATAAT
64161077 A-ATA-AA-
1 ATATATAAT
64161083 ATATCATAAT
1 ATAT-ATAAT
64161093 ATAGTATACAAT
1 ATA-TAT--AAT
*
64161105 ATAGATAAT
1 ATATATAAT
64161114 CATATAATAGAT
1 -ATAT-ATA-AT
*
64161126 ACTATAT-CT
1 A-TATATAAT
*
64161135 ATATCTATAT
1 ATATATA-AT
64161145 ATATATAAT
1 ATATATAAT
*
64161154 ATATGTAA-
1 ATATATAAT
64161162 ATA-ATATAT
1 ATATATA-AT
64161171 ATCATATAAT
1 AT-ATATAAT
* *
64161181 AAATCT-AT
1 ATATATAAT
*
64161189 ATCTAT-AT
1 ATATATAAT
64161197 ATATAT-AT
1 ATATATAAT
64161205 ATATAT-AT
1 ATATATAAT
* * *
64161213 TTCTATTAT
1 ATATATAAT
*
64161222 A-ATATCAT
1 ATATATAAT
64161230 ATATATAGAT
1 ATATATA-AT
64161240 ATATATAGAT
1 ATATATA-AT
64161250 ATA-ATAA-
1 ATATATAAT
*
64161257 A-AAATAA-
1 ATATATAAT
* *
64161264 A-AAAAAAT
1 ATATATAAT
*
64161272 AGATATATAT
1 ATATATA-AT
*
64161282 ATATATCAT
1 ATATATAAT
*
64161291 ATCTATAGAT
1 ATATATA-AT
*
64161301 ATCTATATAT
1 ATATATA-AT
*
64161311 CATATATATT
1 -ATATATAAT
*
64161321 ATCATATCAT
1 AT-ATATAAT
64161331 ATATCATATAT
1 ATAT-ATA-AT
64161342 ATATATAGAT
1 ATATATA-AT
64161352 CATATAT-AT
1 -ATATATAAT
64161361 CATATAT-AT
1 -ATATATAAT
64161370 ATATATAGAT
1 ATATATA-AT
64161380 ATATAT-AT
1 ATATATAAT
64161388 CATATAT-AT
1 -ATATATAAT
* *
64161397 AGATAT-CT
1 ATATATAAT
64161405 ATATATAACT
1 ATATATAA-T
*
64161415 TTCA-ATAAT
1 AT-ATATAAT
64161424 ATATAT-AT
1 ATATATAAT
64161432 CATATATATAT
1 -ATATATA-AT
64161443 ATATATAGAT
1 ATATATA-AT
*
64161453 CATATATGTCAT
1 -ATATA--TAAT
64161465 ATATATATAT
1 ATATATA-AT
*
64161475 ATAGATAGAT
1 ATATATA-AT
*
64161485 ATATATATT
1 ATATATAAT
64161494 AT-TGA-AAGT
1 ATAT-ATAA-T
*
64161503 -TATATATAG
1 ATATATA-AT
64161512 ATATATAAT
1 ATATATAAT
*
64161521 AGATAT-AT
1 ATATATAAT
*
64161529 ATATATCAT
1 ATATATAAT
64161538 ATATATAACT
1 ATATATAA-T
*
64161548 TTCA-ATAAT
1 AT-ATATAAT
*
64161557 ATATATATCT
1 ATATATA-AT
*
64161567 ATCTATATAT
1 ATATATA-AT
*
64161577 ATATATGAT
1 ATATATAAT
*
64161586 ATATATGAT
1 ATATATAAT
*
64161595 CTATATATAT
1 ATATATA-AT
* *
64161605 ATAGATCAT
1 ATATATAAT
*
64161614 ATATATCAT
1 ATATATAAT
64161623 ATATATAAT
1 ATATATAAT
64161632 -TATATAGAT
1 ATATATA-AT
*
64161641 AGATAT-AT
1 ATATATAAT
64161649 CATATAT-AT
1 -ATATATAAT
* *
64161658 AGATAT-CT
1 ATATATAAT
64161666 ATATATAACT
1 ATATATAA-T
*
64161676 TTCA-ATAAT
1 AT-ATATAAT
64161685 ATATATAGAT
1 ATATATA-AT
64161695 ATGATAT-A-
1 AT-ATATAAT
*
64161703 ATAGATAAT
1 ATATATAAT
64161712 ATATATATAT
1 ATATATA-AT
*
64161722 ATATATCAT
1 ATATATAAT
64161731 ATATAT-AT
1 ATATATAAT
*
64161739 ATGTAT-AT
1 ATATATAAT
64161747 ATATCATAGAT
1 ATAT-ATA-AT
*
64161758 ATATATCAT
1 ATATATAAT
64161767 ATATATAGAT
1 ATATATA-AT
*
64161777 ATCTATATAT
1 ATATATA-AT
* *
64161787 CTATATCTAT
1 ATATAT-AAT
*
64161797 ATATATCAT
1 ATATATAAT
*
64161806 ATATATTAT
1 ATATATAAT
* *
64161815 CTATATCAT
1 ATATATAAT
*
64161824 ATATATCAT
1 ATATATAAT
64161833 AT-TATATAT
1 ATATATA-AT
* *
64161842 AGATATATT
1 ATATATAAT
* *
64161851 AGATATGAT
1 ATATATAAT
64161860 ATA-ATAGAT
1 ATATATA-AT
64161869 AATATATAAT
1 -ATATATAAT
*
64161879 ATAT-TCAT
1 ATATATAAT
64161887 ATATAT-AT
1 ATATATAAT
*
64161895 ATATGTATAT
1 ATATATA-AT
64161905 ATATCATAGAT
1 ATAT-ATA-AT
64161916 ATATAT
1 ATATAT
64161922 CANNNNNNNN
Statistics
Matches: 2377, Mismatches: 351, Indels: 707
0.69 0.10 0.21
Matches are distributed among these distances:
6 13 0.01
7 89 0.04
8 495 0.21
9 765 0.32
10 685 0.29
11 272 0.11
12 42 0.02
13 12 0.01
14 4 0.00
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.44
Consensus pattern (9 bp):
ATATATAAT
Found at i:64158986 original size:73 final size:72
Alignment explanation
Indices: 64158866--64161918 Score: 759
Period size: 71 Copynumber: 43.1 Consensus size: 72
64158856 TGATACATAT
* * * *
64158866 ATATA-ATATATATAGATATGATATA-ATAGATAATATATATATCATATATATATATGTATGTAT
1 ATATAGATATATATATATCT-ATATATAT-GAT-ATATATATATGATATATATATATATATGTAT
*
64158929 GTATATCATAG
63 CTATAT-ATAG
* * * * * * *
64158940 ATATAGATATATAGATATCTATATATATGATATATATCTATGATATACATACATACATATATATA
1 ATATAGATATATATATATCTATATATATGATATATATATATGATATATATATATATATGTATCTA
*
64159005 TATGATAT
66 TAT-ATAG
** * *
64159013 ATATTATCTATTATATCATATCTATATATAT-ATCTATATATA--ACTTTCATA-ATATATAT-T
1 ATA-TAGATA-TATAT-ATATCTATATATATGATATATATATATGA-TAT-ATATATATATATGT
*
64159073 ATCTATATATAT
61 ATCTATATATAG
* *
64159085 ATATATATATGATATAT-TCTATATATAT-ATTATATATATATAGATATCTATATATATATGTAT
1 ATATAGATAT-ATATATATCTATATATATGA-TATATATATAT-GATATATATATATATATGTAT
64159148 CTATATATATG
63 CTATATATA-G
* * *
64159159 ATATATGATCTATATATATATATATAGATATGATATA-ATATATGA-ATA-ATATATATAT-CA-
1 ATATA-GA--TATATATATATCTATATATATGATATATATATATGATATATATATATATATGTAT
64159219 -TATATATA-
63 CTATATATAG
* * *
64159227 ACTTTCA-ATA-ATATATATCTATATATAT-ATAGATAATATAT-ATATATAGATCATATATG--
1 A-TAT-AGATATATATATATCTATATATATGATATAT-ATATATGATATATATAT-ATATATGTA
*
64159286 TC-ATATATAT
62 TCTATATATAG
* * * * *
64159296 ATATA-ATA-ATATATAT-TAT-TGA-AAGTTATATATAGAT-ATCTATATATATATATATATCT
1 ATATAGATATATATATATCTATAT-ATATGATATATATATATGATATATATATATATATGTATCT
* *
64159355 ATATCTAT
65 ATATATAG
* * * * * *
64159363 ATAT-GATATATAT-GATCTATATATAT-ATATAGATATGTCATA-ATATATATAGATAG-ATAT
1 ATATAGATATATATATATCTATATATATGATATATATATATGATATATATATATATAT-GTATCT
64159423 ATATATTATG
65 ATATA-TA-G
* *
64159433 A-A-AGTTATATATAGATATCTATATATATGATATATATATCTAT-ATCTATATAGATATATATG
1 ATATAG--ATATATATATATCTATATATATGATATATATA--TATGA--TATATATATATATATG
*
64159495 -ATCTATATATATAT
60 TATC--TATATATAG
** * * * *
64159509 ATATAGATATGATATAATAGATAATATATAT-ATCTTATATAACTTTCATA-ATTATATCTATAT
1 ATATAGATAT-ATAT-ATATCT-ATATATATGAT-ATATAT-A-TATGATATA-TATATATATAT
* *
64159572 -TATATATATATGAC
59 GTATCTATATAT-AG
* * * *
64159586 ATATATGATCTATATATATAT-TAT-TAT-CTATATATATA-GATATCTAT-TATATTATAG-AT
1 ATATA-GATATATATATATCTATATATATGATATATATATATGATATATATATATA-TAT-GTA-
64159645 TCTATATATATG
62 TCTATATATA-G
* * * * * ** *
64159657 ATATATATGATCTATATATATATAGATATGATATATAGATAAT-ATATATATCATATATAACTTT
1 ATATAGAT-ATATATATATCTATATATATGATATATATAT-ATGATATATAT-ATATATATGTAT
* *
64159721 CAATATATAT
63 CTATATATAG
* ** * * * * * * *
64159731 ATCTATCTATATAATATAT-GACATATATGATCTATATATATTATATATAGTATCTATATATATA
1 ATATAGATATAT-ATATATCTATATATATGATATATATATATGATATATA-TATATATATGTATC
*
64159795 TGATATATTG
64 T-ATATATAG
* ** * * * *
64159805 ATCTA-ATATATATATAGATATGATATAATAATA-ATATATATCATATATATACTTTCATAATAT
1 ATATAGATATATATATATCTAT-ATAT-ATGATATATATATATGATATATATA-TAT-AT-ATGT
* *
64159868 AATCTATCTATAT
61 -ATCTATATATAG
* * * * * *
64159881 ATATATATGACATATATGATCT-TATATTATTAT-TAT-TATAT-ATATCTATATAT-TATATAA
1 ATATAGAT-ATATATAT-ATCTATATA-TATGATATATATATATGATATATATATATATATGTAT
* *
64159941 CTTTCAT-TAT
63 CTAT-ATATAG
* * * * * *
64159951 ATCTATTATATATATATAT-GA-ATATATGATCTATATATAT-ATAGATCATATATATA--TATA
1 ATATA-GATATATATATATCTATATATATGATATATATATATGATATAT-ATATATATATGTATC
64160011 TATATATAG
64 TATATATAG
* *
64160020 --ATAGATATATTATTGAAAGT-TATATATATGATATATA-ATA-GATA-ATATATATATCATAT
1 ATATAGATATA-TA-T-ATA-TCTATATATATGATATATATATATGATATATATATATAT-ATGT
* *
64160079 ATATA-ACTTTCA-
61 ATCTATA-TAT-AG
* * * * *
64160091 ATA-ATATATCTATCTATCTATATATAT-ATATGATATATATGATCTATATATATATA-G-ATAT
1 ATATAGATATATATATATCTATATATATGATAT-ATATATATGATATATATATATATATGTATCT
*
64160152 ATATATCAT
65 ATATAT-AG
* * * *
64160161 ATATAGATATCTATAATAACT-T-TCA-ATAATATATATATATAGATATA-ATA-ATA-AT-AAT
1 ATATAGATATATAT-ATATCTATAT-ATATGATATATATATAT-GATATATATATATATATGTAT
* *
64160219 ATATA-ATAT
63 CTATATATAG
* *
64160228 ATATAGATATATAGTCATATATATATATA-GATATATATATATTATGA-AT-TATATATA-G-AT
1 ATATAGATATATA-T-ATATCTATATATATGATATATATATATGAT-ATATATATATATATGTAT
*
64160288 ATATA-ATAG
63 CTATATATAG
* * * *
64160297 ATA-ATATATCATATATAACTTATAATATTAT-ATCTACTATAATATGA-ATATGATCTATATAT
1 ATATAGATAT-ATATATATC-TAT-ATA-TATGATATA-TAT-ATATGATATAT-ATATATATAT
* *
64160359 ATAACATATATATA-
59 GTATC-TATATATAG
* * *
64160373 ATATATA-ATATA-ATATATAT-TATA-GATATATATA-ATTCA-ATA-ATATATATA-G-A--T
1 ATATAGATATATATATATCTATATATATGATATATATATA-TGATATATATATATATATGTATCT
64160427 ATGATAT--
65 AT-ATATAG
*
64160434 A-ATAGATAATATATATATCATATATATATG-TATACATATCATAGATATATATCATATATATAG
1 ATATAGAT-ATATATATATC-TATATATATGATATATATAT-AT-GATATATAT-ATATATAT-G
*
64160497 ATATCTATATATTAT
60 -TATCTATATA-TAG
* * * * * * * *
64160512 ATCTATATATATCATATATATATGTATAT-ATACTAATATATATCATATTATAGATATCTATATA
1 ATATAGATATAT-ATATATCTATATATATGATA-T-ATATATATGATA-TATATATATATATGTA
* *
64160576 TCTATATCTAT
62 TCTATATATAG
* * * * * *
64160587 ATTATATCATATTATATAGATC-ATATATGTCAATATATATATATAGATAGATAGATATATTATT
1 A-TATA-GATA-TATATATATCTATATATAT-GATATATATATAT-GATATATATATATA-TA-T
*
64160651 GAAGT-TATATATATG
59 GTA-TCTATATATA-G
* * * * * *
64160666 ATAT--ATA-ATAGTA-ATATATATATCT-ATATATA-ACTTTCA-ATA-A-ATATCTATCTATC
1 ATATAGATATATA-TATATCTATATATATGATATATATA-TATGATATATATATATATATGTATC
*
64160722 TATATATAT
64 TATATATAG
* * * *
64160731 ATAT-GATAT-TATATGA--TA-ATATATTA-ATCATATTTATCATATTATATATGATATATATA
1 ATATAGATATATATAT-ATCTATATATATGATAT-ATATATATGATA-TATATAT-ATATATGTA
64160790 TCATATATATAG
62 TC-TATATATAG
** * * * * * *
64160802 ATATCTATATATA-ACTTTCAATAAATAT-ATATATAGATATGATATA-ATAGATATAT-AATC-
1 ATATAGATATATATA-TATCTATATATATGATATATATATATGATATATATATATATATGTATCT
*
64160862 ATATATAT
65 ATATATAG
* * * *
64160870 ATATAGAT-CATATATGTCATATATATATTATAGATATATAT-ATATATGA-AGTTATATATG-A
1 ATATAGATATATATATATC-TATATATATGATATATATATATGATATAT-ATA--TATATATGTA
*
64160931 TATATA-ATAG
62 TCTATATATAG
* *
64160941 ATAATA-ATATCATATATAACT-TA-ATA--ATAT-TATATCT-ATATATATATGATATAT-TGA
1 AT-ATAGATAT-ATATATATCTATATATATGATATATATATATGATATATATAT-ATATATGT-A
64160998 TCTATATAT--
62 TCTATATATAG
* * * * *
64161007 ATATA-ATATATACATA--TA-ATA-ATAAAATATATATAT-A-ATATATA-ATA-ATTTAAT-A
1 ATATAGATATATATATATCTATATATATGATATATATATATGATATATATATATATATGT-ATCT
*
64161062 ATATAAATG
65 ATATATA-G
* * *
64161071 ATATA-AAATA-AAATATC-ATA-ATAT-AGTATACA-ATATAGATA-ATCATATA-ATA-G-AT
1 ATATAGATATATATATATCTATATATATGA-TATATATATAT-GATATAT-ATATATATATGTAT
* *
64161126 ACTATATCTAT
63 -CTATATATAG
* * * * * * * * * * * *
64161137 ATCTATATATATATA-ATATATGTAAATAATATATATCATATAATAAATCTATATCTATATATAT
1 ATATAGATATATATATATCTATATATATGATATATAT-ATATGATATATATATATATATGTATCT
*
64161201 ATATATAT
65 ATATATAG
*** * ** ***
64161209 ATATTTCTAT-TATAATATC-ATATATAT-AGATATATATA-GATATA-ATA-A-A-AAATAAAA
1 ATATAGATATATAT-ATATCTATATATATGATATATATATATGATATATATATATATATGTATCT
* *
64161266 AAAAATAG
65 ATATATAG
* * *
64161274 ATATATATATATATCATATCTATAGATAT-CTATATATCATAT-ATAT-TATCATATCATA--TA
1 ATATAGATATATAT-ATATCTATATATATGATATATAT-ATATGATATATAT-ATAT-ATATGTA
*
64161334 TC-ATATATAT
62 TCTATATATAG
* *
64161344 ATATAGAT-CATATATATC-ATATATAT-ATATATAGATAT-ATATATCATATATATA-GATATC
1 ATATAGATATATATATATCTATATATATGATATATATATATGATATAT-ATATATATATG-TATC
64161404 TATATATA-
64 TATATATAG
* * * *
64161412 ACTTTCA-ATAATATATATATC-ATATATAT-ATATATATAGATCATATATGTCATATATA--TA
1 A-TAT-AGAT-ATATATATATCTATATATATGATATATATATATGATATATAT-ATATATATGTA
* *
64161472 TATATAGATAG
62 TCTATATATAG
* * *
64161483 ATATATATAT-TATTGAAAGT-TATATATA-GATATATA-ATA-GATATATATATATCATATATA
1 ATATAGATATATA-T-ATA-TCTATATATATGATATATATATATGATATATATATAT-ATATGTA
*
64161543 TAACT-T-T-CA-
62 T--CTATATATAG
* * *
64161552 ATA-ATATATATATCTATCTATATATAT-ATATGATATATATGATCTATATATATATA-G-ATC-
1 ATATAGATATATATATATCTATATATATGATAT-ATATATATGATATATATATATATATGTATCT
*
64161612 ATATATATC
65 ATATATA-G
* ** * * * * * **
64161621 ATATATATA-ATTATATAGATAGATATATCATATATATAGAT-ATCTATATATA-ACTTTCAATA
1 ATATAGATATA-TATATATCTATATATATGATATATATATATGATATATATATATA-TATGTAT-
*
64161683 ATATATATAG
63 CTATATATAG
* *
64161693 ATAT-GATATAATAGATAATATATATATATAT-ATATCATATATAT-ATATGTATATATATCATA
1 ATATAGATAT-AT--AT-ATATCTATATATATGATAT-ATATATATGATATATATATATAT-AT-
* *
64161755 G-ATATATATCATAT
59 GTATCTATAT-ATAG
* * * *
64161769 ATATAGATATCTATATATCTATATCTAT-ATATATCATATAT-AT-TATCTATATCATATATATC
1 ATATAGATATATATATATCTATATATATGATATAT-ATATATGATATATATATAT-ATATGTATC
*
64161831 -ATAT-TAT
64 TATATATAG
* *
64161838 ATATAGATATATTAGATAT-GATATA-ATAGATAATATATAATAT-ATTCATATATATATATATG
1 ATATAGATATA-TATATATCTATATATAT-GAT-ATATAT-ATATGA-T-ATATATATATATATG
*
64161900 TATATATATCATAG
60 TATCTATAT-ATAG
64161914 ATATA
1 ATATA
64161919 TATCANNNNN
Statistics
Matches: 2259, Mismatches: 368, Indels: 702
0.68 0.11 0.21
Matches are distributed among these distances:
60 4 0.00
61 11 0.00
62 18 0.01
63 9 0.00
64 53 0.02
65 104 0.05
66 89 0.04
67 154 0.07
68 191 0.08
69 228 0.10
70 214 0.09
71 232 0.10
72 151 0.07
73 198 0.09
74 135 0.06
75 120 0.05
76 134 0.06
77 86 0.04
78 84 0.04
79 37 0.02
80 7 0.00
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.44
Consensus pattern (72 bp):
ATATAGATATATATATATCTATATATATGATATATATATATGATATATATATATATATGTATCTA
TATATAG
Found at i:64159069 original size:41 final size:40
Alignment explanation
Indices: 64159024--64159819 Score: 214
Period size: 41 Copynumber: 19.2 Consensus size: 40
64159014 TATTATCTAT
64159024 TATATCATATCTATATATATATCTATATATAACT-TTCATAA
1 TATAT-ATATCTATATATATATCTATATATAA-TGTTCATAA
* *
64159065 TATATATTATCTATATATATATATATATATGATATATTCTATATA
1 TATATA-TATCTATATATATATCTATATAT-A-ATGTTC-ATA-A
* *
64159110 TATATTATATATATATAGATATCTATATATATATGTATCTATATATA
1 TATA-TATATCTATATATATATCTATATATA-ATGT-TC---ATA-A
* * *
64159157 TGATATATGATCTATATATATATATATAGAT-ATGAT-ATAA
1 T-ATATAT-ATCTATATATATATCTATATATAATGTTCATAA
*
64159197 TATATGA-AT-AATATATATATCATATATATAACT-TTCAATAA
1 TATAT-ATATCTATATATATATC-TATATATAA-TGTTC-ATAA
* * * *
64159238 TATATATCTATATATATATAGATAATATATATATATAGATCAT-A
1 TATATA--TATCTATATATATAT-CTATATATA-AT-GTTCATAA
* * * *
64159282 TATGTCATATATATATATAATAATATATATTATTGAAAGTT-AT-A
1 TATAT-ATATCTATATAT-AT-ATCTATA-TA-T-AATGTTCATAA
* * * *
64159326 TATAGATATCTATATATATATATATATCTATATCTAT-ATATGA
1 TATATATATCTATATATATATCTATATATA-ATGT-TCATA--A
*
64159369 TATATATGATCTATATATATA--TATAGAT-ATG-TCATAA
1 TATATAT-ATCTATATATATATCTATATATAATGTTCATAA
* * * *
64159406 TATATATA--GATAGATATATATAT-TATGAAAGTT-AT-A
1 TATATATATCTATATATATATCTATATAT-AATGTTCATAA
* * *
64159442 TATAGATATCTATATATATGATATATATATCTATATCTAT-ATAGA
1 TATATATATCTATATATAT-ATCTATATA--TA-ATGT-TCATA-A
* *
64159487 TATATATGATCTATATATATATATATAGAT-ATG---AT-A
1 TATATAT-ATCTATATATATATCTATATATAATGTTCATAA
* *
64159523 TA-ATAGAT-AATATATATATCT-TATATAACT-TTCAT-A
1 TATATATATCTATATATATATCTATATATAA-TGTTCATAA
* * *
64159559 -AT-TATATCTATATTATATATATATGACATATATGATCTATATA
1 TATATATATCTATA-TATATATCTAT-ATATA-ATGTTC-ATA-A
** * * *
64159602 TATATTATTATCTATATATATAGATATCTATTATATT-ATAGA
1 TATA-TA-TATCTATATATATATCTATATATAATGTTCATA-A
* * * *
64159644 TTCTATATATATGATATATATGATCTATATATATATAGAT-ATGA
1 -TATATATATCT-ATATATAT-ATCTATATATA-AT-GTTCATAA
* *
64159688 TATATAGAT-AATATATATATC-ATATATAACT-TTC--AA
1 TATATATATCTATATATATATCTATATATAA-TGTTCATAA
* * * *
64159724 TATATATATCTATCTATATAATATATGACATATATGATCTATATA
1 TATATATATCTATATATAT-ATCTAT-ATATA-ATGTTC-ATA-A
* * * * *
64159769 TATTATATATAGTATCTATATATATATGATATATTGATC-TAA
1 TA-TATATAT-CTATATATATATCTAT-ATATAATGTTCATAA
64159811 TATATATAT
1 TATATATAT
64159820 AGATATGATA
Statistics
Matches: 579, Mismatches: 83, Indels: 186
0.68 0.10 0.22
Matches are distributed among these distances:
32 4 0.01
33 12 0.02
34 11 0.02
35 10 0.02
36 30 0.05
37 38 0.07
38 24 0.04
39 33 0.06
40 25 0.04
41 73 0.13
42 29 0.05
43 59 0.10
44 65 0.11
45 66 0.11
46 51 0.09
47 28 0.05
48 21 0.04
ACGTcount: A:0.44, C:0.06, G:0.05, T:0.45
Consensus pattern (40 bp):
TATATATATCTATATATATATCTATATATAATGTTCATAA
Found at i:64171942 original size:2 final size:2
Alignment explanation
Indices: 64171924--64178238 Score: 4101
Period size: 2 Copynumber: 3145.5 Consensus size: 2
64171914 NNNNNNNNNN
* * * *
64171924 TA TA T- TA TA TG TA TA TA TA TA GA TA TC TA TA TA TA TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
64171965 TCA TA TA TA TCA TA TA TA TA TA -A TA TA TA GA TA TA TA TA T- TA
1 T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
64172007 T- TGA AA GTA TA TA TA TA TGA TA TA TA TA T- TA CTA T- TA TA TA
1 TA T-A TA -TA TA TA TA TA T-A TA TA TA TA TA TA -TA TA TA TA TA
* * *
64172048 TC TA TA TA TA -A CTT TA -A TA -A TA T- TA TA TC TA TCA TA TA TA
1 TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA
*
64172088 TA TA TGA CA TA TA TGA TA TA TA TA TA TA TA TGA -A TA TA TA T-
1 TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA T-A TA TA TA TA TA
* * * *
64172129 TA TGA AA GT- TA TA TA TA GA TA TC TA TA TA TA TGA TA TA TA TC
1 TA T-A TA -TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
*
64172171 TA TA TA T- TA TA TA TGA TA TA TA TA -A TC TA TA TA TA TA TA TGA
1 TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA T-A
* * * *
64172213 TA TA TA TGA TA -A GA TA TA TA TA TA TA TA GA TA TC TA TA GA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64172255 TGA TA TA TA TC TA TGA TA TA TA TA CA TA TA TA TA TA TGA TA TA
1 T-A TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA
* *
64172298 TA TA T- TA TA T- TA TC TA T- TA T- TA T- TA TCA TA TC TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
64172336 TA TCA TA TA TA TA TGA TA TA TA TA TA TGA TA -A TA TA -A TGA T-
1 TA T-A TA TA TA TA T-A TA TA TA TA TA T-A TA TA TA TA TA T-A TA
* * *
64172377 TA TA TA TGA TA TA GA TA T- TA TA TA TA TGA TA TA TA TC TA GA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
* * * *
64172420 TA TA TA CA TA TA TA TA TGA TA TA TA TA AA TA TA GA TA TA TA GA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64172463 AA T- TA TA TA TA TGA TA TA TA TC TA TGA TA T- TA TA CA -A TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA T-A TA TA TA TA TA TA TA TA
*
64172504 TA TA TA TA TA T- TA TC TA T- TA TA TCA TA T- TA TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA
* * *
64172543 TA TGA AA GT- TA TA TA TA GA TA TC TA TA TA TA TGA TA TA TA -A
1 TA T-A TA -TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
* * *
64172584 TC TA TA TA TA TA TA TGA TA T- TA TGA TC TA TA TA TA TA TA TA GA
1 TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA
* *
64172627 TA TA TA TA TCA TA TA TA TA TA GA TA AA TA TA TA TA T- TA T- TGA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* *
64172669 -A GT- TA TA TA TA TA TA T- TA T- TA TC TA T- TA TA TA TC TA TA
1 TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64172707 TA TA -A CTT TCA -A TA -A TA TA TA TA TC TA TC TA TA TA -A TA TA
1 TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64172747 TA TGA CA TA TA TA TC TA TA TA TA TA TA TGA TA TA TA T- TA TC TA
1 TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
*
64172790 T- TA TA TCA TA TC TA TA TA TA TA TA T- TA T- TGA -A GT- TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA TA TA
* * *
64172828 TA TA GA TA TC TA TA TA TA TGA T- TA -A TA T- TA TC TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
* *
64172868 TA TA TGA TA TA -A TGA TC T- TA TA TA TA TA GA TCA TA TA TA TA
1 TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA T-A TA TA TA TA
*
64172909 TA -A TA TA TA -A TA -A TA -A TA TA T- TA T- TGA AA GT- TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA TA TA TA
* *
64172946 TA TA TA TA TA TA TA TC TA T- TA TA TA TCA TA TA TA TA -A CTT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA -TA TA
* *
64172988 -A TA -A TA TA TC TA T- TA T- TA TA TA TA TA TGA -A TA TA TGA TC
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA
* * *
64173027 TA -A TA TA TGA TA TA TA TA TA GA TA TA GTA TA TA GA TA TC TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA
*
64173070 TA TA TA TA TA TA TCA -A TA TA TA TA AA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64173112 TA GA TA AA TA TA TA -A TA TC TA TA TA TA TGA TA TA TA TA TGA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA T-A TA
* *
64173155 TA TA CA -A TA TA TA TGA TA TA TA TA T- TA TC TA T- TA TA TCA TA
1 TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA
64173196 T- TA TA TA TA T- TA TGA -A T- TA TA TA TA -A TA T- TA TA TA TA
1 TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64173233 TA TA TA TA TC TA TA TA TA TA T- TGA TA TA TA TGA TC TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA
* *
64173276 TA TA GA TCA TA TA TA TA TA TA TA TA TA GA TA -A TA TA TA TA T-
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64173317 TGA AA GT- TA TA TA TA TGA TA TA TA T- TA TC TA T- TA TA TA TC
1 T-A TA -TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
* *
64173357 TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA TC TA TA TA TA TA
1 TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64173398 TA TA TGA CA TA TA TGA TC TA TA TA TA TA TA TA TA TA T- TA TC TA
1 TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
64173441 T- TA TA TCA TA TCA TA TA TA TA TA TA T- TA TGA AA GT- TA TA TA
1 TA TA TA T-A TA T-A TA TA TA TA TA TA TA TA T-A TA -TA TA TA TA
* * *
64173482 TA GA TA TC TA TA TA TA TGA TA TA TA TA T- TA TA TA TA TA TA GA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
* *
64173524 TCA TA TA TA TCA TA TA TA TA TA TA GA TA GA TA TA TA T- TA T- TGA
1 T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* *
64173567 AA GT- TA TA TA TA TGA TA TA TA TA T- TA TC TA T- TA TA TA TCA
1 TA -TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA T-A
* * * *
64173607 TA T- TA -A CTT TCA -A TA TA TA TC T- TC TA TC TA TA TA TA TA TA
1 TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
64173647 -A TGA CA TA TA TGA TC TA TA TA TA TA TA TA GA TCA TA TA TG TCA
1 TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A
* * * *
64173690 TA TA TA TA TA AA TA GA TA TA T- TA T- TGA AA GT- TA TA TA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA TA TA TA TA TA
* * *
64173731 TA TA TA TA GA TA TGA TA TA -A TA GA TA -A TA TA TA TA TA GA TCA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* * * * *
64173773 TA TA TG CA TA TA TA TA TA TA GA TA GA TA TA TA TA T- TGA AA GT-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA
* *
64173815 TA TA TA TA TGA TA TA TA T- TA TA TA TA TA TA TT TA TT TA TA -A
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64173856 TCA TA TA TA TA TA TA TA TA GA TA TC TA TA TA TA TA T- TT TA T-
1 T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
64173897 TA T- TT TA TA TA TA TA GA TA -A TA TA T- TT TA T- TT TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * * *
64173935 TT TA TT TT TT TT TA T- TT TA TA TA TA TA TA TA GA TA AA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
64173976 -A TA TA AA TA TA TA AA TA GA TA -A TA TC TA TA TA TA TA AA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64174016 -A AA TA TA TA TA TA TA GA TA TA TG TA TA TCA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* *
64174058 -A TA TA T- TA T- TGA -A GTA TA TA GA -A TA TA -A TA TC TA TA TA
1 TA TA TA TA TA TA T-A TA -TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64174096 TA TA TA TA TA TA TA AA AA TA TA TA TA TA -A TA -A TA TA -A TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
64174135 TA TA TA TA -A TA TA -A TA TC TA TA TA -A CT- TCA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA
* * * *
64174174 TC TA TC TA TA TA TA TA TGA AA TC TA T- TA TA TA TA TA TA TA TCA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A
*
64174217 TA TA TA TA TA TA TA TA TCA TA TA TA TA TA TA TA TA TA TA TC TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
*
64174260 TA TA TA TA TA TA TA TA TA TA TA TA TGA -A TA TA TGA TC TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA
* * * *
64174303 TA TA TA T- TA TC TA TA TA TA TA TA GA TA TC TA TC TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64174344 TA TA GA TA TC TA TA TA TA TGA TA TA TA TGA TC TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA
* *
64174388 TA TA TA GA TA TGA TA TA -A TA TA TGA TA TA -A TA GA TA -A TA TA
1 TA TA TA TA TA T-A TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
* * *
64174429 TA TA TCA TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TC TA TC
1 TA TA T-A TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA
* * *
64174469 TA TA TA TA TA TA GA TA -A TA TA TA TA TA TA GA TCA TA TA TG TCA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A
* * *
64174512 TA TA TA TA TA TA GA TA GA TA TA TA TA T- TA T- TGA AA GT- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA TA TA
* * * *
64174553 TA TA GA TA TC TA TA TA TGA TA TA TA TA TC TA TA TC TA TA TGA TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA
* * *
64174597 TA TA TGA TC TA TA TA TA TA TA TA GA TA T- TCA TA TA TA TA TA GA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* * *
64174640 TA GA TA TA TA TA T- TA TGA -A T- TA TA TA GA TA TC TA TA TA TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64174680 TGA TA TA TA TC TA TA TC TA TA TA TGA TA TA TA TGA TC TA TA TA
1 T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA
* *
64174723 TA TA TA TA TA GA TA TGA TA TA -A TA -A TA -A TA TA TA TA TC TA
1 TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA
*
64174763 TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64174804 TGA CA TA TA TGA TC TA TA TA TA TA TA TA T- TA TC TA TA TA TA TA
1 T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
64174847 TA GA TA TC TA TC TA TA TA TA TA TA GA TA TC TA TA TA TA TGA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * *
64174890 TA TA TGA TC TA TA TA TA TA TA TA GA TA TGA TA TA -A TA GA TA -A
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
* *
64174932 TA TA TA TA TCA TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TC
1 TA TA TA TA T-A TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA
* * *
64174972 TA TC TA TA TA TA TA TA TGA CA TA TA TGA TC TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA
* * *
64175016 TA TA GA TA TC TA TA TA TA TA TGA TA TA TA TGA TC TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA
* *
64175060 TA TA GA TA TGA TA TA -A TA GA TA -A TA TA TA TA TCA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
* * * *
64175102 -A CTT TCA -A TA -A TA TA TA TC TA TC TA TA TA TA TA TA TGA CA
1 TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * *
64175142 TA TA TGA TC TA TA TA TA TA T- TA TC TA T- TA TA TCA TA TC TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
* * * *
64175184 TA TA TC TA TA TA TA -A CTT TCA -A TA -A TA TA TC TA TC TA TA TA
1 TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA
* * *
64175225 TA TA TA TA TGA CA TA TA TGA TC TA TA TA TA TA TA TA GA TCA TA
1 TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA
* * * * *
64175268 TA TG TCA TA TA TA TA TA TA GA TA GA TA GA TA TA T- TA T- TGA AA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
*
64175310 GT- TA TA TA TA TGA TA TA TA -A TA GA TA -A TA TA TA TA TCA TA
1 -TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * * *
64175350 TA TA TA -A CTT TCA -A TA -A TA TA TC TA TC TA TC TA TA TA TA TA
1 TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64175391 TA TGA TA TA TA TGA TC TA TA TA TA TA TA GA TA TA TA TA TCA TA
1 TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * *
64175434 TA TA TA GA TA TC TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA
*
64175475 TA TA GA TA TGA TA TA -A TA -A TA -A TA TA TA TCA TA TA TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
* * * *
64175516 TA GA TCA TA TA TG TCA TA TA TA TA TA TA GA TA GA TA TA TA TA TA
1 TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64175560 T- TA T- TGA AA GT- TA TA TA TA GA TA TA TA -A TA GA TA -A TA TA
1 TA TA TA T-A TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64175599 TA TCA TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TC TA TC TA
1 TA T-A TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA
* *
64175639 TA TA TA TA TGA TA TA TA TGA TC TA TA TA TA TA TA TA GA TCA TA
1 TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA
* *
64175682 TA TA TCA TA TA TA TA TA TA GA TA TA TA TA TCA TA TA TA TA GA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* * *
64175726 TC TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA GA TA TGA TA
1 TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA
* * *
64175766 TA -A TA GA TA -A TA TA TA TA TCA TA TA TA TA TG TA TA CA TA TCA
1 TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A
* * * * *
64175808 TA GA TA TA TA TCA TA TA TA TA GA TA TC TA TA TA TC TA TA TC TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64175851 TA TA TA TA TCA TA TA TA TA TG TA TA TA TA TCA TA GA TA TA TA TCA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A
* * * *
64175896 TA TA TA TA GA TA TC TA TA TA TC TA TA TC TA TA TA TA TA TCA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * * *
64175939 TA TA TA TA GA TCA TA TA TG TCA TA TA TA TA TA TA TA GA TA GA TA
1 TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
* * *
64175983 GA TA TA T- TA T- TGA AA GT- TA TA TA TA TGA TA TA TA -A TA GA
1 TA TA TA TA TA TA T-A TA -TA TA TA TA TA T-A TA TA TA TA TA TA
* *
64176022 TA -A TA TA TA TA TCA TA TA TA TA -A CTT TCA -A TA -A TA TA TC
1 TA TA TA TA TA TA T-A TA TA TA TA TA -TA T-A TA TA TA TA TA TA
* * *
64176061 TA TC TA TC TA TA TA TA TA TA TGA TA TA TA TGA TC TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA
* *
64176105 TA GA TCA TA TA TA TCA TA TA TA TA TA TA GA TA TA TA TA TCA TA
1 TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * *
64176148 TA TA TA GA TA TC TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA
* *
64176189 TA GA TA TGA TA TA -A TA GA TA -A TA TA TA TCA TA TA TA TA TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* * * *
64176231 GA TCA TA TA TG TCA TA TA TA TA TA TA TA GA TA GA TA TA TA TA TA
1 TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64176275 T- TA T- TGA AA GT- TA TA TA TA GA TA TA TA -A TA GA TA -A TA TA
1 TA TA TA T-A TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64176314 TA TCA TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TC TA TC TA
1 TA T-A TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA
* *
64176354 TA TA TA TA TGA TA TA TA TGA TC TA TA TA TA TA TA TA GA TCA TA
1 TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA
* *
64176397 TA TA TCA TA TA TA TA TA TA GA TA TA TA TA TCA TA TA TA TA GA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* * *
64176441 TC TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA GA TA TGA TA
1 TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA
* * *
64176481 TA -A TA GA TA -A TA TA TA TA TCA TA TA TA TA TG TA TA CA TA TCA
1 TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A
* * * * *
64176523 TA GA TA TA TA TCA TA TA TA TA GA TA TC TA TA TA TC TA TA TC TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64176566 TA TA TA TA TCA TA TA TA TA TG TA TA TA TA TCA TA GA TA TA TA TCA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A
* * * *
64176611 TA TA TA TA AA TA TC TA TA TA TC TA TA TC TA TA TA TA TA TCA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* *
64176654 TA TA T- TA TC TA TA TCA TA TA TA TCA TA TA TA TA TA GA TA TA TA
1 TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA
* * *
64176697 TA GA TA TGA TA TA -A TA GA TA -A TA GA TA -A TA TA TA -A TA TA
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64176736 TA TA TCA TA TA TA TA TA TG TA TA TA TA TCA TA GA TA TA TA TCA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A
* * * *
64176779 TA TC TA TA GA TA TC TA TA TA TCA TA TA TA T- TA TC TA TA TCA TA
1 TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA T-A TA
*
64176822 TA TA TCA TA TA TA TA TA TA TA GA TCA TA TA TA TCA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA
* * *
64176865 TA TA TA GA TA TA TA TA TCA TA TA TA TA GA TA TC TA TA TA TA -A
1 TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
* *
64176907 CTT TCA -A TA -A TA TA TA TA TCA TA TA TA TA TA TA TA TA GA TCA
1 -TA T-A TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A
* * *
64176949 TA TA TG TCA TA TA TA TA TA TA TA GA TA GA TA TA TA TA T- TA T-
1 TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64176990 TGA AA GT- TA TA TA TA GA TA TA TA -A TA GA TA -A TA TA TA TA TCA
1 T-A TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A
* * *
64177032 TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TC TA TC TA TA TA TA
1 TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
64177073 TA TA TA TGA TA TA TA TGA TC TA TA TA TA TA TA GA TCA TA TA TA
1 TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA T-A TA TA TA
* * *
64177116 TCA TA TA TA TA TA TA TA TA GA TA GA TA TA TCA TA TA TA TA GA TA
1 T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* * *
64177160 TC TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA GA TA TGA TA
1 TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA
* *
64177200 TA -A TA GA TA -A TA TA TA TA TA TA TA TA TCA TA TA TA TA TA TG
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA
* * *
64177241 TA TA TA TA TCA TA GA TA TA TA TCA TA TA TA TA GA TA TC TA TA TA
1 TA TA TA TA T-A TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA
* * *
64177285 TC TA TA TC TA TA TA TA TA TCA TA TA TA T- TA TC TA TA TCA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA T-A TA TA
* * *
64177328 TA TCA TA TA TA TA TA TA GA TA TA TA TA GA TA TGA TA TA -A TA GA
1 TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA
*
64177371 TA -A TA TA TA -A TA TA TA TCA TA TA TA TA TA TA TG TA TA TA TA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA
* * * * *
64177412 TCA TA GA TA TA TA TCA TA TA TA TA GA TA TC TA TA TA TC TA TA TC
1 T-A TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
64177456 TA TA TA TA TA TCA TA TA TA T- TA TG TA TA TCA TA TA TA TCA TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA
* * *
64177498 TA TA TA TA GA TA TA TA TA GA TA TGA TA TA -A TA GA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA
* * *
64177539 TA -A TA TA TA TA TCA TA TA TA TA GA TA TC TA TA TA TA -A CTT TCA
1 TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA -TA T-A
* *
64177582 -A TA -A TA TA TA TA TA TA TA TA GA TA TGA TA TA -A TA GA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA
* *
64177621 TA TA TA TA TCA TA TA TA TA TG TA TA TA TA TCA TA GA TA TA TA TCA
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A
* * * * *
64177666 TA TA TA TA GA TA TC TA TA TA TC TA TA TC TA TA TC TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
64177708 TA TCA TA TA TA T- TA TC TA TA TCA TA TA TA TCA TA TA TA TA TA
1 TA T-A TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA TA
* *
64177750 TCA TA TA TA TA TA TG TA TA TA TA TCA TA GA TA TA TA TCA TA TA
1 T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A TA TA
* * * *
64177793 TA TA TA GA TA TC TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TC
1 TA TA TA TA TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA
* * * *
64177834 TA TC TC TA -A TA TA TA TA TCA TA GA TA TA TA TCA TA TA TA TA GA
1 TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A TA TA TA TA TA
* * * *
64177877 TA TC TA TA TA TA -A CTT TCA -A TA -A TA TA TA TA TC TA TC TA TA
1 TA TA TA TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64177918 TA TA TA TGA TA TA TA TGA TC TA TA TA TA TA TC GA TA TA TA TA -A
1 TA TA TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * *
64177961 TA TGA TC TA TA TA TA TA TGA TA CA TA TA TA TA TA GA TA TA GA TA
1 TA T-A TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
* *
64178005 TA TA TA GA TA TGA TA TA -A TA GA TA -A TA TA TA TCA TA TA TA TA
1 TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
* * *
64178047 TG TA TA TA TA TCA T- TGA TA TA TA TCA TA TA TA TA GA TA TC TA
1 TA TA TA TA TA T-A TA T-A TA TA TA T-A TA TA TA TA TA TA TA TA
* *
64178089 TA TA TA -A CTT TCA -A TA -A TA TA TA TA TA GA TA TGA TA TA -A
1 TA TA TA TA -TA T-A TA TA TA TA TA TA TA TA TA TA T-A TA TA TA
* *
64178128 TA GA TA -A TA TA TA TCA TA TA TA TA TG TA TA TA TA TCA TA TA TA
1 TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA
* * * *
64178171 TA GA TA TC TA TA TA TC TA TA TC TA TA TA TA TA TCA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA
* *
64178213 TA TC TA TA TCA TA TA TA TA TA GA TA T
1 TA TA TA TA T-A TA TA TA TA TA TA TA T
64178239 TGTTCAATGG
Statistics
Matches: 4911, Mismatches: 808, Indels: 1188
0.71 0.12 0.17
Matches are distributed among these distances:
1 285 0.06
2 4199 0.86
3 427 0.09
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (2 bp):
TA
Found at i:64171972 original size:11 final size:11
Alignment explanation
Indices: 64171956--64172003 Score: 57
Period size: 11 Copynumber: 4.6 Consensus size: 11
64171946 ATATCTATAT
64171956 ATATATAGATC
1 ATATATAGATC
64171967 ATATAT--ATC
1 ATATATAGATC
* *
64171976 ATATATATATA
1 ATATATAGATC
64171987 ATATATAGAT-
1 ATATATAGATC
64171997 ATATATA
1 ATATATA
64172004 TTATTGAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
9 9 0.27
10 7 0.21
11 17 0.52
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (11 bp):
ATATATAGATC
Found at i:64184396 original size:29 final size:28
Alignment explanation
Indices: 64184361--64184436 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 28
64184351 ATGAGATTGG
64184361 CACTAAGTGTGCGGGTTTAAATTGTACA-A
1 CACTAAGTGTGCGGGTTTAAA--GTACAGA
* *
64184390 CACTAAGTGTGCGAGTTTAAAGTACATGG
1 CACTAAGTGTGCGGGTTTAAAGTACA-GA
64184419 CACTAAGTGTGCGTGGTT
1 CACTAAGTGTGCG-GGTT
64184437 GATTATTAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
CACTAAGTGTGCGGGTTTAAAGTACAGA
Found at i:64184654 original size:174 final size:174
Alignment explanation
Indices: 64184390--64184716 Score: 618
Period size: 174 Copynumber: 1.9 Consensus size: 174
64184380 AATTGTACAA
*
64184390 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATGT
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
*
64184455 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCGAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
64184520 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
131 TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
*
64184564 CACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
1 CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
*
64184629 GTGCGAACTCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
66 GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
64184694 TTTGGACAGCGGAAAAGGTAAGT
131 TTTGGACAGCGGAAAAGGTAAGT
64184717 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
CACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGT
GTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAAT
TTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGG
Found at i:64194632 original size:32 final size:32
Alignment explanation
Indices: 64194591--64194652 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
64194581 CATCTATTTT
64194591 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
64194623 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
64194653 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:64197228 original size:16 final size:16
Alignment explanation
Indices: 64197203--64197235 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
64197193 ACGGTATTTT
*
64197203 ATATTTTATAGTAGCA
1 ATATTCTATAGTAGCA
64197219 ATATTCTATAGTAGCA
1 ATATTCTATAGTAGCA
64197235 A
1 A
64197236 AGGAATAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.39
Consensus pattern (16 bp):
ATATTCTATAGTAGCA
Found at i:64199893 original size:18 final size:18
Alignment explanation
Indices: 64199861--64199908 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
64199851 GGTTTCGCAT
*
64199861 AAAAA-GAAAGTAAATAA
1 AAAAACGAAAGAAAATAA
*
64199878 ATAAACGAAAGAAAATAA
1 AAAAACGAAAGAAAATAA
*
64199896 AAAAATGAAAGAA
1 AAAAACGAAAGAA
64199909 GGGGGAAAGG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.75, C:0.02, G:0.12, T:0.10
Consensus pattern (18 bp):
AAAAACGAAAGAAAATAA
Found at i:64200842 original size:10 final size:10
Alignment explanation
Indices: 64200812--64200852 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
64200802 ATCACAAGTC
64200812 TTGTGATATA
1 TTGTGATATA
*
64200822 GTGTGATATA
1 TTGTGATATA
64200832 TTGTGATATA
1 TTGTGATATA
*
64200842 TATATGATATA
1 T-TGTGATATA
64200853 CGTAGAAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 19 0.70
11 8 0.30
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (10 bp):
TTGTGATATA
Found at i:64221333 original size:13 final size:13
Alignment explanation
Indices: 64221317--64221344 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
64221307 GATATTCATA
64221317 ATTAATATGAATT
1 ATTAATATGAATT
64221330 ATTAATATGAATT
1 ATTAATATGAATT
64221343 AT
1 AT
64221345 AGACTCGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:64221664 original size:17 final size:17
Alignment explanation
Indices: 64221642--64221680 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
64221632 CTGACTCCAT
*
64221642 TTTTAT-TTTCTAGTTTA
1 TTTTATATTT-TAGTATA
64221659 TTTTATATTTTAGTATA
1 TTTTATATTTTAGTATA
64221676 TTTTA
1 TTTTA
64221681 CATCTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (17 bp):
TTTTATATTTTAGTATA
Found at i:64222526 original size:17 final size:17
Alignment explanation
Indices: 64222506--64222539 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
64222496 TATTGTTTAG
*
64222506 TCTTCCTTATTTTCCTT
1 TCTTCATTATTTTCCTT
*
64222523 TCTTCATTTTTTTCCTT
1 TCTTCATTATTTTCCTT
64222540 ATATCAAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (17 bp):
TCTTCATTATTTTCCTT
Found at i:64223566 original size:14 final size:14
Alignment explanation
Indices: 64223547--64223575 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
64223537 TTTTTTACTT
64223547 TGTTATATAGATTA
1 TGTTATATAGATTA
64223561 TGTTATATAGATTA
1 TGTTATATAGATTA
64223575 T
1 T
64223576 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:64223673 original size:21 final size:21
Alignment explanation
Indices: 64223649--64223689 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
64223639 AGATTGATTA
* *
64223649 TATAGATATATCCAACTTTTC
1 TATAGAGATATACAACTTTTC
*
64223670 TATAGAGATATAGAACTTTT
1 TATAGAGATATACAACTTTT
64223690 ATCAGTAATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (21 bp):
TATAGAGATATACAACTTTTC
Found at i:64223721 original size:21 final size:21
Alignment explanation
Indices: 64223697--64223736 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
64223687 TTTATCAGTA
*
64223697 ATTCCATTTCATTTATATTAT
1 ATTCCATATCATTTATATTAT
*
64223718 ATTCTATATCATTTATATT
1 ATTCCATATCATTTATATT
64223737 TTGAAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTCCATATCATTTATATTAT
Found at i:64224343 original size:11 final size:11
Alignment explanation
Indices: 64224327--64224351 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
64224317 CTTTATATAC
64224327 ATATACAATAA
1 ATATACAATAA
64224338 ATATACAATAA
1 ATATACAATAA
64224349 ATA
1 ATA
64224352 CAATAATCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (11 bp):
ATATACAATAA
Found at i:64225181 original size:21 final size:21
Alignment explanation
Indices: 64225157--64225200 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
64225147 GAATCTTTAG
*
64225157 TATTTATTGTATCATTT-TATT
1 TATTTAAT-TATCATTTCTATT
*
64225178 TATTTAATTATCCTTTCTATT
1 TATTTAATTATCATTTCTATT
64225199 TA
1 TA
64225201 ACTATTTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.25, C:0.09, G:0.02, T:0.64
Consensus pattern (21 bp):
TATTTAATTATCATTTCTATT
Found at i:64225364 original size:21 final size:24
Alignment explanation
Indices: 64225338--64225383 Score: 71
Period size: 21 Copynumber: 2.0 Consensus size: 24
64225328 AGGTTCTTTA
64225338 TCATTT-TCATT-TTTTA-ATGAT
1 TCATTTCTCATTCTTTTATATGAT
64225359 TCATTTCTCATTCTTTTATATGAT
1 TCATTTCTCATTCTTTTATATGAT
64225383 T
1 T
64225384 TTTATGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.27
22 5 0.23
23 5 0.23
24 6 0.27
ACGTcount: A:0.22, C:0.13, G:0.04, T:0.61
Consensus pattern (24 bp):
TCATTTCTCATTCTTTTATATGAT
Found at i:64233764 original size:6 final size:6
Alignment explanation
Indices: 64233753--64233823 Score: 59
Period size: 5 Copynumber: 13.2 Consensus size: 6
64233743 GGGATCACTA
64233753 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -CTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* * *
64233796 A-GAAT A-GAAT ACTAA- CCTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT A
64233824 GAATAGAAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
4 3 0.05
5 26 0.47
6 26 0.47
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.31
Consensus pattern (6 bp):
ACTAAT
Found at i:64233775 original size:20 final size:21
Alignment explanation
Indices: 64233749--64233794 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
64233739 AGCCGGGATC
64233749 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
64233770 -CTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
64233790 ACTAA
1 ACTAA
64233795 TAGAATAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.33
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:64233788 original size:11 final size:11
Alignment explanation
Indices: 64233749--64233795 Score: 73
Period size: 11 Copynumber: 4.5 Consensus size: 11
64233739 AGCCGGGATC
64233749 ACTAA-CTAAT
1 ACTAATCTAAT
64233759 ACTAATCTAAT
1 ACTAATCTAAT
64233770 -CTAA-CTAAT
1 ACTAATCTAAT
64233779 ACTAATCTAAT
1 ACTAATCTAAT
64233790 ACTAAT
1 ACTAAT
64233796 AGAATAGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.38
11 16 0.47
ACGTcount: A:0.47, C:0.19, G:0.00, T:0.34
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:64233810 original size:27 final size:27
Alignment explanation
Indices: 64233776--64233831 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
64233766 TAATCTAACT
*
64233776 AATACTAATCTAATACTAATAGAATAG
1 AATACTAACCTAATACTAATAGAATAG
64233803 AATACTAACCTAATACTAATAGAATAG
1 AATACTAACCTAATACTAATAGAATAG
64233830 AA
1 AA
64233832 AAAATAGAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.27
Consensus pattern (27 bp):
AATACTAACCTAATACTAATAGAATAG
Found at i:64233839 original size:14 final size:14
Alignment explanation
Indices: 64233820--64233847 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
64233810 ACCTAATACT
64233820 AATAGAATAGAAAA
1 AATAGAATAGAAAA
64233834 AATAGAATAGAAAA
1 AATAGAATAGAAAA
64233848 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:64237997 original size:15 final size:14
Alignment explanation
Indices: 64237976--64238021 Score: 69
Period size: 15 Copynumber: 3.4 Consensus size: 14
64237966 CAAAAAATAG
64237976 AAATAATAATATAT
1 AAATAATAATATAT
64237990 ATAATAATAATATAT
1 A-AATAATAATATAT
64238005 AAA-AATAATATA-
1 AAATAATAATATAT
64238017 AAATA
1 AAATA
64238022 TTTAGAATAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.10
13 10 0.33
14 3 0.10
15 14 0.47
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
AAATAATAATATAT
Found at i:64238000 original size:18 final size:18
Alignment explanation
Indices: 64237977--64238064 Score: 65
Period size: 18 Copynumber: 4.9 Consensus size: 18
64237967 AAAAAATAGA
64237977 AATAATAATATATATAAT
1 AATAATAATATATATAAT
*
64237995 AATAAT-ATATA-AAAAT
1 AATAATAATATATATAAT
* * *
64238011 AATATAAAATATTTAGAAT
1 AATA-ATAATATATATAAT
* * *
64238030 ATTTAGAATATATATAAT
1 AATAATAATATATATAAT
64238048 AA-AATAGATATAATATA
1 AATAATA-ATAT-ATATA
64238065 TAAATAAATT
Statistics
Matches: 53, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
16 8 0.15
17 8 0.15
18 26 0.49
19 11 0.21
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
AATAATAATATATATAAT
Found at i:64238004 original size:13 final size:13
Alignment explanation
Indices: 64237978--64238021 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
64237968 AAAAATAGAA
64237978 ATAATAAT-ATAT
1 ATAATAATAATAT
64237990 ATAATAATAATAT
1 ATAATAATAATAT
*
64238003 ATAAAAATAATAT
1 ATAATAATAATAT
*
64238016 AAAATA
1 ATAATA
64238022 TTTAGAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
12 8 0.29
13 20 0.71
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATAATAATAATAT
Found at i:64238006 original size:25 final size:25
Alignment explanation
Indices: 64237978--64238071 Score: 70
Period size: 27 Copynumber: 3.8 Consensus size: 25
64237968 AAAAATAGAA
64237978 ATAATAATATATATAATAATAATAT
1 ATAATAATATATATAATAATAATAT
* * *
64238003 ATAAAAATAATATAAAATATTTAGA-AT
1 ATAATAAT-ATATATAATA-ATA-ATAT
* * *
64238030 ATTTAGAATATATATAATAA-AATAG
1 A-TAATAATATATATAATAATAATAT
64238055 AT-ATAATATATA-AATAA
1 ATAATAATATATATAATAA
64238072 ATTGAATATA
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
22 5 0.09
23 9 0.16
24 2 0.04
25 10 0.18
26 9 0.16
27 14 0.25
28 6 0.11
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (25 bp):
ATAATAATATATATAATAATAATAT
Found at i:64238073 original size:21 final size:22
Alignment explanation
Indices: 64238036--64238099 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 22
64238026 GAATATTTAG
64238036 AATATATATAATAAAATAG-ATAT
1 AATATATA-AAT-AAATAGAATAT
*
64238059 AATATATAAATAAATTGAATAT
1 AATATATAAATAAATAGAATAT
* *
64238081 AATGT-TAAATATATA-AATA
1 AATATATAAATAAATAGAATA
64238100 AATTAAACCA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
20 4 0.11
21 13 0.36
22 11 0.31
23 8 0.22
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (22 bp):
AATATATAAATAAATAGAATAT
Found at i:64238504 original size:13 final size:13
Alignment explanation
Indices: 64238488--64238515 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
64238478 GATATTCATA
64238488 ATTAATATGAATT
1 ATTAATATGAATT
64238501 ATTAATATGAATT
1 ATTAATATGAATT
64238514 AT
1 AT
64238516 AGACTCGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (13 bp):
ATTAATATGAATT
Found at i:64238757 original size:29 final size:29
Alignment explanation
Indices: 64238679--64238745 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
64238669 TTAAATTAAA
* * * * *
64238679 ATTTTATATATATATATTTATTAATATAT
1 ATTTAATATTTATCTATATATTTATATAT
*
64238708 ATTTATTATTTATCTATATATTTATATAT
1 ATTTAATATTTATCTATATATTTATATAT
64238737 ATTTAATAT
1 ATTTAATAT
64238746 CTTTTTTTAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (29 bp):
ATTTAATATTTATCTATATATTTATATAT
Found at i:64240019 original size:9 final size:9
Alignment explanation
Indices: 64239939--64240019 Score: 54
Period size: 9 Copynumber: 9.0 Consensus size: 9
64239929 CAAGGTCACG
*
64239939 ATCAATAGC
1 ATCAATATC
* *
64239948 GTCACTATC
1 ATCAATATC
*
64239957 ATCAATAGC
1 ATCAATATC
* * *
64239966 GTCACTAGC
1 ATCAATATC
64239975 ATCAATATC
1 ATCAATATC
* * *
64239984 GTCACTAGC
1 ATCAATATC
64239993 ATCAATATC
1 ATCAATATC
* *
64240002 GTCACTATC
1 ATCAATATC
64240011 ATCAATATC
1 ATCAATATC
64240020 GATACCATCA
Statistics
Matches: 51, Mismatches: 21, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.10, T:0.28
Consensus pattern (9 bp):
ATCAATATC
Found at i:64240029 original size:18 final size:18
Alignment explanation
Indices: 64239939--64240020 Score: 128
Period size: 18 Copynumber: 4.6 Consensus size: 18
64239929 CAAGGTCACG
*
64239939 ATCAATAGCGTCACTATC
1 ATCAATATCGTCACTATC
* *
64239957 ATCAATAGCGTCACTAGC
1 ATCAATATCGTCACTATC
*
64239975 ATCAATATCGTCACTAGC
1 ATCAATATCGTCACTATC
64239993 ATCAATATCGTCACTATC
1 ATCAATATCGTCACTATC
64240011 ATCAATATCG
1 ATCAATATCG
64240021 ATACCATCAA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 61 1.00
ACGTcount: A:0.34, C:0.27, G:0.11, T:0.28
Consensus pattern (18 bp):
ATCAATATCGTCACTATC
Found at i:64249395 original size:20 final size:20
Alignment explanation
Indices: 64249370--64249414 Score: 74
Period size: 20 Copynumber: 2.2 Consensus size: 20
64249360 TCTATATAAT
64249370 TATATTATTAATATT-ATTTA
1 TATATTATTAAT-TTAATTTA
64249390 TATATTATTAATTTAATTTA
1 TATATTATTAATTTAATTTA
64249410 TATAT
1 TATAT
64249415 ATTTAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TATATTATTAATTTAATTTA
Found at i:64249418 original size:15 final size:15
Alignment explanation
Indices: 64249380--64249429 Score: 52
Period size: 15 Copynumber: 3.4 Consensus size: 15
64249370 TATATTATTA
64249380 ATAT-TATTTATATATT
1 ATATATATTTA-AT-TT
64249396 AT-TA-ATTTAATTT
1 ATATATATTTAATTT
*
64249409 ATATATATTTAAATT
1 ATATATATTTAATTT
64249424 ATATAT
1 ATATAT
64249430 TGAAATGATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
13 4 0.13
14 4 0.13
15 20 0.67
16 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
ATATATATTTAATTT
Found at i:64249420 original size:20 final size:20
Alignment explanation
Indices: 64249369--64249425 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
64249359 TTCTATATAA
64249369 TTATAT-TA-TTAATATTAT
1 TTATATATATTTAATATTAT
64249387 TTATATAT-TATTAAT-TTAAT
1 TTATATATAT-TTAATATT-AT
64249407 TTATATATATTTAA-ATTAT
1 TTATATATATTTAATATTAT
64249426 ATATTGAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
18 6 0.18
19 5 0.15
20 21 0.64
21 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
TTATATATATTTAATATTAT
Found at i:64249613 original size:21 final size:21
Alignment explanation
Indices: 64249573--64249611 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
64249563 AAATCATGGA
64249573 TAAATCCAAGCGACTCTTTCT
1 TAAATCCAAGCGACTCTTTCT
64249594 TAAATCCAAGCGA-TCTTT
1 TAAATCCAAGCGACTCTTT
64249612 TCGTAGGCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (21 bp):
TAAATCCAAGCGACTCTTTCT
Found at i:64250668 original size:12 final size:12
Alignment explanation
Indices: 64250650--64250693 Score: 72
Period size: 12 Copynumber: 3.8 Consensus size: 12
64250640 CTGGGAGTGG
64250650 TAAAGTAAATAA
1 TAAAGTAAATAA
*
64250662 AAAAGTAAATAA
1 TAAAGTAAATAA
64250674 TAAA-TAAATAA
1 TAAAGTAAATAA
64250685 TAAAGTAAA
1 TAAAGTAAA
64250694 ATATATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 11 0.38
12 18 0.62
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (12 bp):
TAAAGTAAATAA
Found at i:64250703 original size:23 final size:23
Alignment explanation
Indices: 64250650--64250710 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 23
64250640 CTGGGAGTGG
*
64250650 TAAAGTAAATAAAAAAGTAAATAA
1 TAAA-TAAATAATAAAGTAAATAA
64250674 TAAATAAATAATAAAGTAAAATATA
1 TAAATAAATAATAAAGT-AAATA-A
64250699 TATAAT-AATAAT
1 TA-AATAAATAAT
64250711 CAAATCGCAC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
23 12 0.36
24 9 0.27
25 9 0.27
26 3 0.09
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (23 bp):
TAAATAAATAATAAAGTAAATAA
Found at i:64251904 original size:7 final size:7
Alignment explanation
Indices: 64251869--64251893 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
64251859 ATGGAGCCTT
64251869 AATTTAA
1 AATTTAA
64251876 AATTTAA
1 AATTTAA
64251883 AATTTAA
1 AATTTAA
64251890 AATT
1 AATT
64251894 ATTTAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTTAA
Found at i:64255396 original size:2 final size:2
Alignment explanation
Indices: 64255391--64255552 Score: 145
Period size: 2 Copynumber: 80.5 Consensus size: 2
64255381 TATTGAAAGT
* * *
64255391 TA TA TA TA GA TA TC TA TA TA TA TGA TA TA TA TC TA TGA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA T-A TA TA TA TA TA T-A TA TA TA
* *
64255435 TA CA TA TA TA TA T- TA TA TA TA T- TA TA TA T- TA TC TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
64255473 TA TCA TA TC TA TA TA TA TC TA TA TGA TA TA TA TGA TA TA GA TA
1 TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA TA T-A TA TA TA TA
* *
64255516 -A TA TA TA TGA TA TA TA TA TA GA TA TA TA TA TC TA TA T
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA T
64255553 CAACAAGGTT
Statistics
Matches: 129, Mismatches: 20, Indels: 22
0.75 0.12 0.13
Matches are distributed among these distances:
1 5 0.04
2 112 0.87
3 12 0.09
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:64260496 original size:44 final size:44
Alignment explanation
Indices: 64260446--64260533 Score: 176
Period size: 44 Copynumber: 2.0 Consensus size: 44
64260436 TGGACTGGTA
64260446 ATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGGGATT
1 ATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGGGATT
64260490 ATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGGGATT
1 ATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGGGATT
64260534 TAGCCTGGAC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (44 bp):
ATTCAGATCCAAGCTCATTAGAGTAATTGTCGTTGCAGGGGATT
Found at i:64266298 original size:36 final size:34
Alignment explanation
Indices: 64266247--64266316 Score: 104
Period size: 36 Copynumber: 2.0 Consensus size: 34
64266237 TACTCTGAAG
*
64266247 CATTTTGATTGCTATCAGATAAGTTAAAAGGATAAA
1 CATTTTCATTGCTATCAGAT-AGTTAAAA-GATAAA
*
64266283 CATTTTCATTTCTATCAGATAGTTAAAAGATAAA
1 CATTTTCATTGCTATCAGATAGTTAAAAGATAAA
64266317 ATGAGTGGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 6 0.19
35 8 0.25
36 18 0.56
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (34 bp):
CATTTTCATTGCTATCAGATAGTTAAAAGATAAA
Found at i:64268059 original size:19 final size:18
Alignment explanation
Indices: 64268019--64268060 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
64268009 AAGTAATTAC
*
64268019 TTTTTATAAAATTAATAT
1 TTTTTATAAAATTAATAA
64268037 TTTTTATAAAAATT-ATGAA
1 TTTTTAT-AAAATTAAT-AA
64268056 TTTTT
1 TTTTT
64268061 TCATCACATC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TTTTTATAAAATTAATAA
Found at i:64270077 original size:12 final size:12
Alignment explanation
Indices: 64270057--64270086 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
64270047 AATTCATGTT
64270057 TAATTTTTTT-A
1 TAATTTTTTTAA
64270068 TAATTTTTTTAA
1 TAATTTTTTTAA
64270080 TAATTTT
1 TAATTTT
64270087 ATTACAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (12 bp):
TAATTTTTTTAA
Found at i:64275830 original size:33 final size:32
Alignment explanation
Indices: 64275780--64275845 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
64275770 AAATTTTTGC
* *
64275780 AGACCAATTAAAAATAACCTGTTCATCCATTAA
1 AGACCAATTAAAAATAACATGTT-ATCCACTAA
* *
64275813 AGACCAATTGAAGATAACATGTTATCCACTAA
1 AGACCAATTAAAAATAACATGTTATCCACTAA
64275845 A
1 A
64275846 TGATTCACAG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 9 0.31
33 20 0.69
ACGTcount: A:0.45, C:0.20, G:0.09, T:0.26
Consensus pattern (32 bp):
AGACCAATTAAAAATAACATGTTATCCACTAA
Found at i:64276934 original size:6 final size:7
Alignment explanation
Indices: 64276919--64276943 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
64276909 GACTTGGTTC
64276919 AAAATAA
1 AAAATAA
64276926 AAAATAA
1 AAAATAA
64276933 AAAATAA
1 AAAATAA
64276940 AAAA
1 AAAA
64276944 AGCGGCGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAATAA
Done.