Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 204 of 259
Found at i:64903745 original size:28 final size:27
Alignment explanation
Indices: 64903713--64903769 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 27
64903703 TATATTTCAT
64903713 TTTTTATGAA-ATTTTTATATATTTTAAA
1 TTTTTATGAATA-TTTTATA-ATTTTAAA
*
64903741 TTTTTTTGAATATTTTATAATTTTAAA
1 TTTTTATGAATATTTTATAATTTTAAA
64903768 TT
1 TT
64903770 ATTTTTGACG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 10 0.37
28 16 0.59
29 1 0.04
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (27 bp):
TTTTTATGAATATTTTATAATTTTAAA
Found at i:64905318 original size:31 final size:32
Alignment explanation
Indices: 64905227--64905316 Score: 130
Period size: 31 Copynumber: 2.9 Consensus size: 32
64905217 ATTGATGTAT
* **
64905227 AGGGTTTAATTG-TTATTTTAATTATTTTATG
1 AGGGTTTAATTGATTTTTTTAATTATTTTAAA
*
64905258 AGGGGTTAATTGA-TTTTTTAATTATTTTAAA
1 AGGGTTTAATTGATTTTTTTAATTATTTTAAA
64905289 AGGGTTTAATTGATTTTTTTAATTATTT
1 AGGGTTTAATTGATTTTTTTAATTATTT
64905317 AAGTCTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
31 38 0.73
32 14 0.27
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.57
Consensus pattern (32 bp):
AGGGTTTAATTGATTTTTTTAATTATTTTAAA
Found at i:64905664 original size:29 final size:25
Alignment explanation
Indices: 64905611--64905660 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64905601 TAAAATAAAA
64905611 AGCACACCACTCAATCAATTTTTCT
1 AGCACACCACTCAATCAATTTTTCT
64905636 AGCACACCACTCAATCAATTTTTCT
1 AGCACACCACTCAATCAATTTTTCT
64905661 TTCTTTGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.32, G:0.04, T:0.32
Consensus pattern (25 bp):
AGCACACCACTCAATCAATTTTTCT
Found at i:64908948 original size:19 final size:19
Alignment explanation
Indices: 64908918--64908954 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
64908908 TATACCATTT
64908918 ATTTTCTATAATTATTTTAG
1 ATTTTCTATAA-TATTTTAG
64908938 ATTTT-TATAATATTTTA
1 ATTTTCTATAATATTTTA
64908955 ATAATTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 5 0.29
20 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (19 bp):
ATTTTCTATAATATTTTAG
Found at i:64911169 original size:3 final size:3
Alignment explanation
Indices: 64911161--64911195 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
64911151 TTGACTTCAT
64911161 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
64911196 TTTGAATCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:64920554 original size:23 final size:23
Alignment explanation
Indices: 64920523--64920567 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
64920513 TTACTTTTTC
*
64920523 AAATTATTAATAATTTT-TAAAG
1 AAATTATTAAAAATTTTATAAAG
64920545 AAATTCATTAAAAATTTTATAAA
1 AAATT-ATTAAAAATTTTATAAA
64920568 AAACTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 5 0.25
23 11 0.55
24 4 0.20
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (23 bp):
AAATTATTAAAAATTTTATAAAG
Found at i:64921866 original size:26 final size:28
Alignment explanation
Indices: 64921819--64921872 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
64921809 TTTTTTTATG
*
64921819 TTTAAAATTTTTTTTTCACAAG-TAATA
1 TTTAAAATATTTTTTTCACAAGTTAATA
*
64921846 TTTAAACTATTTTTTTC-CAAGTTAATA
1 TTTAAAATATTTTTTTCACAAGTTAATA
64921873 CCTCCATTAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.35, C:0.09, G:0.04, T:0.52
Consensus pattern (28 bp):
TTTAAAATATTTTTTTCACAAGTTAATA
Found at i:64922517 original size:12 final size:12
Alignment explanation
Indices: 64922500--64922525 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
64922490 CAAAATAGGC
64922500 TTTTAGCGGCGT
1 TTTTAGCGGCGT
64922512 TTTTAGCGGCGT
1 TTTTAGCGGCGT
64922524 TT
1 TT
64922526 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:64922573 original size:41 final size:40
Alignment explanation
Indices: 64922514--64922636 Score: 126
Period size: 40 Copynumber: 3.1 Consensus size: 40
64922504 AGCGGCGTTT
* *
64922514 TTAGCGGCG-TTTGGATAAAAAACGCCACTAAAAATCAAGCA
1 TTAGCGGCGCTTT-TAT-AAAAACGCCGCTAAAAATCAAGCA
* ** *
64922555 TTAGCGGCGCTTTTATAAAAACGCTGCTAAAGGTCGAGCA
1 TTAGCGGCGCTTTTATAAAAACGCCGCTAAAAATCAAGCA
* *
64922595 TTAGCGACGCTTTT-TGGAAAACGCCGCTAAAAAT-AAGCA
1 TTAGCGGCGCTTTTAT-AAAAACGCCGCTAAAAATCAAGCA
64922634 TTA
1 TTA
64922637 CCGACGTTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
39 8 0.12
40 46 0.68
41 11 0.16
42 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.21, T:0.24
Consensus pattern (40 bp):
TTAGCGGCGCTTTTATAAAAACGCCGCTAAAAATCAAGCA
Found at i:64922758 original size:41 final size:41
Alignment explanation
Indices: 64922701--64922944 Score: 389
Period size: 41 Copynumber: 6.0 Consensus size: 41
64922691 TGAGTTTTTG
* * *
64922701 GGGCCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATTCAC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
64922742 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCACTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
64922783 GGGCCTTTAGCGGCGTTTGTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
64922824 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
64922865 GGGCCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTT
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
64922906 GGGCCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
64922945 CCGCTTTTGA
Statistics
Matches: 188, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 188 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:64923647 original size:14 final size:14
Alignment explanation
Indices: 64923628--64923687 Score: 59
Period size: 14 Copynumber: 4.3 Consensus size: 14
64923618 TAAATAAGAT
*
64923628 TTAGGGGTTAGTAG
1 TTAGGGGTTAGGAG
*
64923642 TTAGGGGTTAGGGG
1 TTAGGGGTTAGGAG
*
64923656 TTAGGGGTTA-AAGG
1 TTAGGGGTTAGGA-G
* *
64923670 TTAGAGGTTAAGAG
1 TTAGGGGTTAGGAG
64923684 TTAG
1 TTAG
64923688 TGATTTAGGG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
14 37 0.97
15 1 0.03
ACGTcount: A:0.25, C:0.00, G:0.43, T:0.32
Consensus pattern (14 bp):
TTAGGGGTTAGGAG
Found at i:64923651 original size:7 final size:7
Alignment explanation
Indices: 64923628--64923679 Score: 59
Period size: 7 Copynumber: 7.4 Consensus size: 7
64923618 TAAATAAGAT
64923628 TTAGGGG
1 TTAGGGG
**
64923635 TTAGTAG
1 TTAGGGG
64923642 TTAGGGG
1 TTAGGGG
64923649 TTAGGGG
1 TTAGGGG
64923656 TTAGGGG
1 TTAGGGG
**
64923663 TTAAAGG
1 TTAGGGG
*
64923670 TTAGAGG
1 TTAGGGG
64923677 TTA
1 TTA
64923680 AGAGTTAGTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 38 1.00
ACGTcount: A:0.23, C:0.00, G:0.44, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:64923665 original size:21 final size:21
Alignment explanation
Indices: 64923628--64923686 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
64923618 TAAATAAGAT
* **
64923628 TTAGGGGTTAGTAGTTAGGGG
1 TTAGGGGTTAGGAGTTAAAGG
*
64923649 TTAGGGGTTAGGGGTTAAAGG
1 TTAGGGGTTAGGAGTTAAAGG
* *
64923670 TTAGAGGTTAAGAGTTA
1 TTAGGGGTTAGGAGTTA
64923687 GTGATTTAGG
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.25, C:0.00, G:0.42, T:0.32
Consensus pattern (21 bp):
TTAGGGGTTAGGAGTTAAAGG
Found at i:64927824 original size:43 final size:43
Alignment explanation
Indices: 64927764--64927854 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
64927754 CTTTGAGTTC
* * * * *
64927764 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGACTAAGAAAATGCATTATATATTTT
*
64927806 ATTACCAAGATTTACTTGACTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGACTAAGAAAATGCATTATATATTTT
64927849 ATTACC
1 ATTACC
64927855 TTGCATATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 4 0.10
43 38 0.90
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGACTAAGAAAATGCATTATATATTTT
Found at i:64928118 original size:16 final size:16
Alignment explanation
Indices: 64928099--64928129 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
64928089 TATTATTTGA
64928099 AAAAAATATATTTTTT
1 AAAAAATATATTTTTT
*
64928115 AAAAGATATATTTTT
1 AAAAAATATATTTTT
64928130 AGCGGCGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (16 bp):
AAAAAATATATTTTTT
Found at i:64928256 original size:42 final size:43
Alignment explanation
Indices: 64928127--64928331 Score: 229
Period size: 42 Copynumber: 4.8 Consensus size: 43
64928117 AAGATATATT
* * * *
64928127 TTTAGCGGCGTTTGTGGGAAAAAGTGCCGCTAAAGCTCAAT-ATC
1 TTTAGCGGCGTTTGTGGG-AAAAGCGCCGCTAAAGGTC-TTGGTC
* *
64928171 TTTAGCGGCGTTTGTGGGAAAAGTGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
64928214 TTTAGCGACGTTTGTGGG-GAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * * *
64928256 TTTAGTGGCATTTGTAGGG--AAGCACCGCTAAAGATCATGGTC
1 TTTAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGGTCTTGGTC
*
64928298 TTTAGCGGCGTTTATGGGAAAAGCGCCGCTAAAG
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
64928332 TTAGCGACGC
Statistics
Matches: 139, Mismatches: 18, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
41 3 0.02
42 66 0.47
43 52 0.37
44 18 0.13
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:64928434 original size:22 final size:21
Alignment explanation
Indices: 64928402--64928446 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
64928392 TTAGTGGCGT
*
64928402 TAAAAAACGCCGCTAAAGGCC
1 TAAAAAACGCCGCTAAAAGCC
64928423 TAAAAAAGCGCCGCTAAAAGCC
1 TAAAAAA-CGCCGCTAAAAGCC
64928445 TA
1 TA
64928447 TTTTGGTGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.44, C:0.27, G:0.18, T:0.11
Consensus pattern (21 bp):
TAAAAAACGCCGCTAAAAGCC
Found at i:64928544 original size:14 final size:12
Alignment explanation
Indices: 64928504--64928539 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
64928494 ATAAAGAGAG
*
64928504 AAAAATAATGTAA
1 AAAAATAAT-TTA
64928517 AAAAATAATTTA
1 AAAAATAATTTA
64928529 AAAAATAATTT
1 AAAAATAATTT
64928540 TTAAAGTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 13 0.59
13 9 0.41
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (12 bp):
AAAAATAATTTA
Found at i:64929099 original size:18 final size:18
Alignment explanation
Indices: 64929072--64929109 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
64929062 AAATTTTAAC
64929072 TTTTACTCAAAAATA-TT
1 TTTTACTCAAAAATACTT
64929089 TTTTAACTCAAAAATACTT
1 TTTT-ACTCAAAAATACTT
64929108 TT
1 TT
64929110 AAAAAACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.21
18 11 0.58
19 4 0.21
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (18 bp):
TTTTACTCAAAAATACTT
Found at i:64929592 original size:19 final size:20
Alignment explanation
Indices: 64929565--64929609 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
64929555 ATTATACACC
* *
64929565 AAAAAATAT-GAATTTAATT
1 AAAATATATAGAATTCAATT
64929584 AAAATATATAGAATTCAATT
1 AAAATATATAGAATTCAATT
*
64929604 TAAATA
1 AAAATA
64929610 ATTTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.36
Consensus pattern (20 bp):
AAAATATATAGAATTCAATT
Found at i:64930478 original size:89 final size:89
Alignment explanation
Indices: 64930323--64930502 Score: 270
Period size: 89 Copynumber: 2.0 Consensus size: 89
64930313 AAAGCAAATG
* * *
64930323 AATTTTGATCATCAAACAGTCATGAACCAACATCCCAAATTCAGAAACATTTACATGTGAATCTG
1 AATTTTGATCATCAAACAATCATGAACCAACATCCCAAATTCAAAAACATTTACATGTGAACCTG
*
64930388 TCAAAGCAGAAATAATATTGTAGC
66 TCAAAGCAGAAATAACATTGTAGC
* * * * *
64930412 AATTTTGATTATCGAACAATCATGAACCAGCATCCCAAATTTAAAAAGATTTACATGTGAACCTG
1 AATTTTGATCATCAAACAATCATGAACCAACATCCCAAATTCAAAAACATTTACATGTGAACCTG
*
64930477 TCAAAGCAGAAATAGCATTGTAGC
66 TCAAAGCAGAAATAACATTGTAGC
64930501 AA
1 AA
64930503 ATGGAGTGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.42, C:0.18, G:0.13, T:0.27
Consensus pattern (89 bp):
AATTTTGATCATCAAACAATCATGAACCAACATCCCAAATTCAAAAACATTTACATGTGAACCTG
TCAAAGCAGAAATAACATTGTAGC
Found at i:64937509 original size:46 final size:46
Alignment explanation
Indices: 64937421--64937542 Score: 149
Period size: 46 Copynumber: 2.6 Consensus size: 46
64937411 ATCTCAAGTC
64937421 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCATCTCGTA-GCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGACTATCATCTCG-AGGCT
* *
64937469 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGACTAT-CATCTCGAGGCT
* * *
64937515 GATGTATGTTCTAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
64937543 AGCCCTCATT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
45 2 0.03
46 47 0.70
47 14 0.21
48 4 0.06
ACGTcount: A:0.22, C:0.26, G:0.20, T:0.31
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGACTATCATCTCGAGGCT
Found at i:64937599 original size:48 final size:45
Alignment explanation
Indices: 64937411--64937599 Score: 148
Period size: 46 Copynumber: 4.0 Consensus size: 45
64937401 TTTGGCTCGT
* * *
64937411 ATCTCAAGTCGATGCCATGTCCCAGACATGGTCTTACACT-GACTATC
1 ATCTCATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAG-CTCTC
* * *
64937458 ATCTCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGCT-TAC
1 ATCTCAT-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-C
* * * * * * *
64937504 GTCTCGAGGCTGATGTATGTTCTAGACATGTCTTACACTAGCCCTC
1 ATCTC-ATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
* *
64937550 ATTTCAATGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTC
1 ATCTC-ATGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC
64937598 AT
1 AT
64937600 AATGTGGTCA
Statistics
Matches: 113, Mismatches: 22, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 58 0.51
47 31 0.27
48 23 0.20
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (45 bp):
ATCTCATGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC
Found at i:64943781 original size:50 final size:50
Alignment explanation
Indices: 64943655--64943848 Score: 167
Period size: 51 Copynumber: 3.8 Consensus size: 50
64943645 GTTATGAGAA
* * *
64943655 CACATGTGTAGTACTATGTGCAGGCTACTATGTGT-TGAAGACGGTT-TTAGCT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTAT-CAGA---TTGTTAGAT
* * * * *
64943707 CACGTGTCTAGTACTAAATGCAGGCTACTACGTGTATCAGATTGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGAT
* * * * * *
64943757 CACATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAGCTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTG-TTAGAT
* * * *
64943808 CACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGA
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGA
64943849 GAGCTTCGGT
Statistics
Matches: 117, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 2 0.02
50 40 0.34
51 41 0.35
52 33 0.28
53 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATTGTTAGAT
Found at i:64943823 original size:51 final size:51
Alignment explanation
Indices: 64943706--64943856 Score: 178
Period size: 51 Copynumber: 3.0 Consensus size: 51
64943696 CGGTTTTAGC
* * * * * * * *
64943706 TCACGTGTCTAGTACTAAATGCAGGCTACTACGTGTATCAGATTG-TTAGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
* * *
64943756 TCACATGTGTAGTACTAAGTACAGGCTACTATGCGTACCCGATAGCTTCGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
* *
64943807 TCACGTGTGTAGTACTAAGTGTAGGCTACTATGCGTACCAGAGAGCTTCG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCG
64943857 GTTACAAGGG
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 36 0.43
51 48 0.57
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.29
Consensus pattern (51 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAGCTTCGA
Found at i:64947793 original size:29 final size:30
Alignment explanation
Indices: 64947746--64947813 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
64947736 CGGCCCAAGA
* *
64947746 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
64947776 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
64947806 GCAAATAT
1 GTAAATAT
64947814 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:64950064 original size:46 final size:46
Alignment explanation
Indices: 64950012--64950239 Score: 296
Period size: 46 Copynumber: 5.0 Consensus size: 46
64950002 AGTGTGCTCT
* *
64950012 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
64950058 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
64950104 CTGATATGAAATGAATAAGACCATGGTTGAAATATACTATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * ** *
64950150 GTGACATGAAATGAACAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
64950196 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
64950240 TCATGTCAAA
Statistics
Matches: 163, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.01
46 162 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:64955822 original size:2 final size:2
Alignment explanation
Indices: 64955815--64955852 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
64955805 AAATGTAGCT
64955815 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
64955853 AGCATTCCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:64958760 original size:20 final size:19
Alignment explanation
Indices: 64958717--64958760 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
64958707 AATGACTATT
*
64958717 TTTTAATATTTAAAATATA
1 TTTTAATATTTAAAATAAA
* *
64958736 GTTTATATATTTAAATTAAA
1 TTTTA-ATATTTAAAATAAA
64958756 TTTTA
1 TTTTA
64958761 CAAAAACTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTTAATATTTAAAATAAA
Found at i:64959089 original size:29 final size:29
Alignment explanation
Indices: 64959035--64959092 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
64959025 TTATAAGGAT
*
64959035 TGTATCAAATTAGTCTCTCTATTATTAAA
1 TGTATCAAATTAGTCTCTCTACTATTAAA
* *
64959064 TGTATCAATTTAGTCTTTAC-ACTATTAAA
1 TGTATCAAATTAGTCTCT-CTACTATTAAA
64959093 AAGAATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 24 0.96
30 1 0.04
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (29 bp):
TGTATCAAATTAGTCTCTCTACTATTAAA
Found at i:64959681 original size:20 final size:21
Alignment explanation
Indices: 64959638--64959685 Score: 73
Period size: 20 Copynumber: 2.3 Consensus size: 21
64959628 AAATTAGAAA
64959638 AAAATAAATAAAAACTTTTAC
1 AAAATAAATAAAAACTTTTAC
64959659 AAAA-AAATAAAAACTTCTT-C
1 AAAATAAATAAAAACTT-TTAC
64959679 AAAATAA
1 AAAATAA
64959686 GTGAAAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 17 0.68
21 8 0.32
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (21 bp):
AAAATAAATAAAAACTTTTAC
Found at i:64960412 original size:8 final size:8
Alignment explanation
Indices: 64960396--64960438 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
64960386 ATCTTAAATT
64960396 TAAATATA
1 TAAATATA
*
64960404 TATATATA
1 TAAATATA
*
64960412 TAAATAAA
1 TAAATATA
*
64960420 TAAATATT
1 TAAATATA
64960428 TAAAATATA
1 T-AAATATA
64960437 TA
1 TA
64960439 TACTAATAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAAATATA
Found at i:64960457 original size:29 final size:31
Alignment explanation
Indices: 64960389--64960517 Score: 101
Period size: 29 Copynumber: 4.2 Consensus size: 31
64960379 TAATTTAATC
64960389 TTAAATTTAAATATATATATATATAAATAAA
1 TTAAATTTAAATATATATATATATAAATAAA
* *
64960420 TAAATATTTAAA-ATATATATA-CT-AATAAA
1 TTAA-ATTTAAATATATATATATATAAATAAA
*
64960449 TTTAAATTTAAAT-TTTATATTAATATTAATATTAAA
1 -TTAAATTTAAATATATATA-T-ATA-TAA-A-TAAA
*
64960485 -TAAATTTAATTATAT-TATAT-TAAATAAA
1 TTAAATTTAAATATATATATATATAAATAAA
*
64960513 ATAAA
1 TTAAA
64960518 AATCCCCCAC
Statistics
Matches: 79, Mismatches: 7, Indels: 26
0.71 0.06 0.23
Matches are distributed among these distances:
28 4 0.05
29 23 0.29
30 8 0.10
31 13 0.16
32 9 0.11
33 2 0.03
34 13 0.16
35 3 0.04
36 4 0.05
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (31 bp):
TTAAATTTAAATATATATATATATAAATAAA
Found at i:64960511 original size:24 final size:28
Alignment explanation
Indices: 64960457--64960512 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 28
64960447 AATTTAAATT
64960457 TAAATTTTATATTAATATTAATATTAAA
1 TAAATTTTATATTAATATTAATATTAAA
64960485 TAAA-TTTA-ATT-ATATT-ATATTAAA
1 TAAATTTTATATTAATATTAATATTAAA
64960509 TAAA
1 TAAA
64960513 ATAAAAATCC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 12 0.43
25 5 0.18
26 3 0.11
27 4 0.14
28 4 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
TAAATTTTATATTAATATTAATATTAAA
Found at i:64960586 original size:26 final size:25
Alignment explanation
Indices: 64960555--64960612 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
64960545 CCACCACCGT
*
64960555 ACTTCAACAT-CCATCTTTCCATGCAA
1 ACTTCAACATGCCATC-GTCC-TGCAA
64960581 ACTTCAA-ATGCCATCGTCCTGCAA
1 ACTTCAACATGCCATCGTCCTGCAA
*
64960605 ATTTCAAC
1 ACTTCAAC
64960613 CTCCCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 11 0.39
25 5 0.18
26 12 0.43
ACGTcount: A:0.31, C:0.33, G:0.07, T:0.29
Consensus pattern (25 bp):
ACTTCAACATGCCATCGTCCTGCAA
Found at i:64981046 original size:1 final size:1
Alignment explanation
Indices: 64981040--64981072 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
64981030 TACTTTGCCT
64981040 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
64981073 GGGAGAGGCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:64982813 original size:132 final size:132
Alignment explanation
Indices: 64982004--64982795 Score: 1449
Period size: 132 Copynumber: 6.0 Consensus size: 132
64981994 ATGTATTGGC
*
64982004 ATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
1 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
64982069 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
66 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
64982134 AT
131 AT
64982136 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
1 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
64982201 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
66 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
64982266 AT
131 AT
64982268 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
1 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
64982333 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
66 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
64982398 AT
131 AT
* *
64982400 ATCAGATCCTGTCTTCCTATATTGATAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATTT
1 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
* *
64982465 TGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
66 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
64982530 AT
131 AT
* * *
64982532 ATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATTT
1 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
* *
64982597 TGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
66 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
64982662 AT
131 AT
* * *
64982664 ATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGAAGATGCAGATCTTGTCTTCCCATTT
1 ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
* *
64982729 TGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
66 TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
64982794 AT
131 AT
64982796 TGTAGATCTT
Statistics
Matches: 652, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
132 652 1.00
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
ATCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATAT
TGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
AT
Found at i:64982838 original size:46 final size:44
Alignment explanation
Indices: 64982755--64982841 Score: 111
Period size: 44 Copynumber: 1.9 Consensus size: 44
64982745 CGCAGAAAGC
* * * *
64982755 AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATTGT
1 AGATCTTGCCTTCATGTATTGACGCGAAGCAGATCGAAGATTGT
*
64982799 AGATCTTGCCTTCCTGTAGTTGACAGCGAAGCAGATCGAAGAT
1 AGATCTTGCCTTCATGTA-TTGAC-GCGAAGCAGATCGAAGAT
64982842 GGCAGATTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 16 0.44
45 4 0.11
46 16 0.44
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
AGATCTTGCCTTCATGTATTGACGCGAAGCAGATCGAAGATTGT
Found at i:64986358 original size:46 final size:46
Alignment explanation
Indices: 64986306--64986433 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
64986296 GCTCTCTGAA
64986306 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
**
64986352 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** *
64986398 ATGAAATGTGTAAGATAATGGTTGAAA-AGACCATGG
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
64986434 TTGAAAGATA
Statistics
Matches: 75, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
45 8 0.11
46 67 0.89
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:64986433 original size:15 final size:16
Alignment explanation
Indices: 64986415--64986449 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
64986405 GTGTAAGATA
64986415 ATGGTTGAAA-AGACC
1 ATGGTTGAAAGAGACC
*
64986430 ATGGTTGAAAGATACC
1 ATGGTTGAAAGAGACC
64986446 ATGG
1 ATGG
64986450 CAACATGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.37, C:0.11, G:0.29, T:0.23
Consensus pattern (16 bp):
ATGGTTGAAAGAGACC
Found at i:64986436 original size:61 final size:61
Alignment explanation
Indices: 64986358--64986485 Score: 229
Period size: 61 Copynumber: 2.1 Consensus size: 61
64986348 TGATATGAAA
*
64986358 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGATAATGGT
1 TGAA-AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACAATGGT
*
64986420 TGAAAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGT
1 TGAAAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACAATGGT
64986481 TGAAA
1 TGAAA
64986486 GATACCATCG
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
61 60 0.94
62 4 0.06
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (61 bp):
TGAAAAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACAATGGT
Found at i:64986476 original size:46 final size:46
Alignment explanation
Indices: 64986420--64986778 Score: 454
Period size: 46 Copynumber: 7.8 Consensus size: 46
64986410 AGATAATGGT
*
64986420 TGAA-AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
** * *
64986465 TGTGTAAGACCATGGTTGAAAGATACCATCGCAACATGATATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
** ** *
64986511 TGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* * *
64986557 AGAATAAGACCATGGTTGAGAGATACCATGGCAACATGACAAGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
* ***
64986603 TGAATAAGACCATAGTTGAAAGATACCATGGCAGTGTGACATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
64986649 TGAATAAGACCATGGTTGAAAGATACCATGGCAA-AGTGACATGAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACA-TGACATGAAA
* *
64986695 AGAATAAGACCATGGTTGAAAGATACCATGGCAACACGACA-GAAAA
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-AAA
* * * * * *
64986741 TGAGTAAGACAATAGTTGAAAGACACTATGGCATCATG
1 TGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
64986779 TCAAAGATAA
Statistics
Matches: 276, Mismatches: 34, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
45 3 0.01
46 272 0.99
47 1 0.00
ACGTcount: A:0.42, C:0.14, G:0.23, T:0.20
Consensus pattern (46 bp):
TGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACATGAAA
Found at i:64986503 original size:107 final size:107
Alignment explanation
Indices: 64986317--64986541 Score: 387
Period size: 107 Copynumber: 2.1 Consensus size: 107
64986307 TGAAATGTGT
64986317 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
* *
64986382 ACCATGGCAACATGATATGAAATGTGTAAGATAATGGTTGAA
66 ACCATCGCAACATGATATGAAATGTGTAAGACAATGGTTGAA
**
64986424 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
*
64986489 ACCATCGCAACATGATATGAAATGTGTAAGACCATGGTTGAA
66 ACCATCGCAACATGATATGAAATGTGTAAGACAATGGTTGAA
*
64986531 AGATACCATGG
1 A-AGACCATGG
64986542 CAATGTGATA
Statistics
Matches: 111, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
107 103 0.93
108 8 0.07
ACGTcount: A:0.40, C:0.13, G:0.24, T:0.23
Consensus pattern (107 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGAATAAGACCATGGTTGAAAGAT
ACCATCGCAACATGATATGAAATGTGTAAGACAATGGTTGAA
Found at i:64986588 original size:138 final size:137
Alignment explanation
Indices: 64986424--64986763 Score: 509
Period size: 138 Copynumber: 2.5 Consensus size: 137
64986414 AATGGTTGAA
* * *
64986424 AAGACCATGGTTGAAAGATACCATGGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAATGAGTAAGACCATAGTTGAAAGAT
* ** * *
64986489 ACCATCGCAACATGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGATATG
65 ACCATCGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAAGTGACATG
64986554 AAAAGAAT
130 AAAAGAAT
* *
64986562 AAGACCATGGTTGAGAGATACCATGGCAACATGACAAGAAATGAATAAGACCATAGTTGAAAGAT
1 AAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGAAATGAGTAAGACCATAGTTGAAAGAT
* ***
64986627 ACCATGGCAGTGTGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAAGTGACATG
65 ACCATCGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAAGTGACATG
64986692 AAAAGAAT
130 AAAAGAAT
* *
64986700 AAGACCATGGTTGAAAGATACCATGGCAACACGACAGAAAATGAGTAAGACAATAGTTGAAAGA
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAG-AAATGAGTAAGACCATAGTTGAAAGA
64986764 CACTATGGCA
Statistics
Matches: 182, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
137 2 0.01
138 179 0.98
139 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.20
Consensus pattern (137 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAATGAGTAAGACCATAGTTGAAAGATA
CCATCGCAACATGACATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAAGTGACATGA
AAAGAAT
Found at i:64992655 original size:19 final size:20
Alignment explanation
Indices: 64992617--64992670 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 20
64992607 AACGCCACTT
64992617 TTTGCATT-CATTTCATTCA
1 TTTGCATTACATTTCATTCA
64992636 TTTGCATTACATTTCA-TCA
1 TTTGCATTACATTTCATTCA
* * *
64992655 TATGTATTAAATTTCA
1 TTTGCATTACATTTCA
64992671 CGAAATGACC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 24 0.77
20 7 0.23
ACGTcount: A:0.28, C:0.17, G:0.06, T:0.50
Consensus pattern (20 bp):
TTTGCATTACATTTCATTCA
Found at i:64992848 original size:24 final size:24
Alignment explanation
Indices: 64992794--64992840 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
64992784 TTAGAAAGAT
*
64992794 AAGAACAGATGCAAAAGGAAATGC
1 AAGAACAGATGCAAAAGCAAATGC
64992818 AAGAACAGATGCAAACA-CAAATG
1 AAGAACAGATGCAAA-AGCAAATG
64992841 TAATAACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.55, C:0.15, G:0.21, T:0.09
Consensus pattern (24 bp):
AAGAACAGATGCAAAAGCAAATGC
Found at i:64993138 original size:83 final size:82
Alignment explanation
Indices: 64992987--64993144 Score: 271
Period size: 83 Copynumber: 1.9 Consensus size: 82
64992977 ATGACAATGT
*
64992987 AGATCCTCCTACCCCCTGGTTTCACCCTGACAAATGCTCAAACGCAACACGAGATGCACACGCAA
1 AGATCCTCCTACCCCCTGGTTTCACCCTGAAAAATGCTCAAACGCAACACGAGATGCACACGCAA
64993052 AGGCCATCCGTTACTGA
66 AGGCCATCCGTTACTGA
* * *
64993069 AGATCCTCTCTACCCCCTGGTTTCACTCTGAAAAATGCTCAAACGCAACCCGAGATGCACACGCG
1 AGATCCTC-CTACCCCCTGGTTTCACCCTGAAAAATGCTCAAACGCAACACGAGATGCACACGCA
64993134 AAGGCCATCCG
65 AAGGCCATCCG
64993145 ATACAATCAG
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
82 8 0.11
83 63 0.89
ACGTcount: A:0.28, C:0.35, G:0.18, T:0.18
Consensus pattern (82 bp):
AGATCCTCCTACCCCCTGGTTTCACCCTGAAAAATGCTCAAACGCAACACGAGATGCACACGCAA
AGGCCATCCGTTACTGA
Found at i:65002328 original size:133 final size:132
Alignment explanation
Indices: 65002083--65002494 Score: 549
Period size: 133 Copynumber: 3.1 Consensus size: 132
65002073 GTGAATTTAC
** * * * *
65002083 AGATCTTATCTCCATGATATAACAATGGAGCAGATCTAAGATGGCGAATGTTATCTCCCTAAAGT
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGCGAATCTTATCTCCCT-AAGT
* *
65002148 AGCAAGGGAGC-GAATTCAAGCCACTAGCCTTGTCTCACTGAA-CAGCAGTGGAGCAAACTGAAG
65 AGCAAGGGAGCAG-ATTCAAGCCACTAGCCTTGTCTCCCT-AAGCAGCAGTGGAGCAGACTGAAG
65002211 ATTGT
128 ATTGT
* *
65002216 AGATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGGTGAATCTTATCTCCCTGAAGT
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGCGAATCTTATCTCCCT-AAGT
* * *
65002281 AGCAAGGGAGCAGATTCAAGCCACTAACCTTGTCCCCCTAAGTAGCAGTGGAGCAGACTGAAGAT
65 AGCAAGGGAGCAGATTCAAGCCACTAGCCTTGTCTCCCTAAGCAGCAGTGGAGCAGACTGAAGAT
65002346 TGT
130 TGT
* * * * *
65002349 AGATCTTATCTCTATGAGGTAGCAATGGAGCAGATCGAGGACGACAAATCTTATCTCCCTAAGGC
1 AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAA-GT
* * * * *
65002414 AGCAAGGGAGCAGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAATAGAGCAGGCTGGAGAT
65 AGCAAGGGAGCAGATTCAAGCCACTAGCCTTGTCTCCCTAAGCAGCAGTGGAGCAGACTGAAGAT
*
65002479 TAT
130 TGT
65002482 AGATCTTATCTCC
1 AGATCTTATCTCC
65002495 TTAAGCATTA
Statistics
Matches: 245, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
132 4 0.02
133 240 0.98
134 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (132 bp):
AGATCTTATCTCCATGAGGTAGCAATGGAGCAGATCGAAGACGGCGAATCTTATCTCCCTAAGTA
GCAAGGGAGCAGATTCAAGCCACTAGCCTTGTCTCCCTAAGCAGCAGTGGAGCAGACTGAAGATT
GT
Found at i:65002378 original size:45 final size:45
Alignment explanation
Indices: 65002191--65002382 Score: 149
Period size: 45 Copynumber: 4.3 Consensus size: 45
65002181 CTCACTGAAC
* * * *
65002191 AGCAGTGGAGCAAACTGAAGATTGTAGATCTTATCTCCATGAGGT
1 AGCAATGGAGCAGACTGAAGACTGTAGATCTTATCTCCATGAAGT
* * *
65002236 AGCAATGGAGTAGA-TCGAAGACGGT-GAATCTTATCTCCCTGAAGT
1 AGCAATGGAGCAGACT-GAAGACTGTAG-ATCTTATCTCCATGAAGT
* * * * ** * * * *
65002281 AGCAAGGGAGCAGATTCAAGCCACTA-ACCTTGTCCCCCT-AAGT
1 AGCAATGGAGCAGACTGAAGACTGTAGATCTTATCTCCATGAAGT
* * * *
65002324 AGCAGTGGAGCAGACTGAAGATTGTAGATCTTATCTCTATGAGGT
1 AGCAATGGAGCAGACTGAAGACTGTAGATCTTATCTCCATGAAGT
65002369 AGCAATGGAGCAGA
1 AGCAATGGAGCAGA
65002383 TCGAGGACGA
Statistics
Matches: 110, Mismatches: 31, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
43 22 0.20
44 20 0.18
45 67 0.61
46 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.23
Consensus pattern (45 bp):
AGCAATGGAGCAGACTGAAGACTGTAGATCTTATCTCCATGAAGT
Found at i:65002599 original size:266 final size:264
Alignment explanation
Indices: 65002083--65002578 Score: 582
Period size: 266 Copynumber: 1.9 Consensus size: 264
65002073 GTGAATTTAC
* * * * * * *
65002083 AGATCTTATCTCCATGATATAACAATGGAGCAGATCTAAGATGGCGAATGTTATCTCCCTAAAGT
1 AGATCTTATCTCCATGAGATAACAATGGAGCAGATCGAAGACGACAAATCTTATCTCCCTAAAGC
* *
65002148 AGCAAGGGAGCGAATTCAAGCCACTAGCCTTGTCTCACTGAACAGCAGTGGAGCAAACTGAAGAT
66 AGCAAGGGAGCGAATTCAAGCCACTAGCCTTGTCTCACTGAACAGCAATAGAGCAAACTGAAGAT
* * * *** *
65002213 TGTAGATCTTATCTCCATGAGGTAGCAATGGAGTAGATCGAAGACGGTGAATCTTATCTCCCTGA
131 TATAGATCTTATCTCCATAAGGTAGC-A-GGAGCAGATCGAAGACGAAAAATATTATCTCCCTGA
* * * * *
65002278 AGTAGCAAGGGAGCAGATTCAAGCCACTAACCTTGTCCCCCTAAGTAGCAGTGGAGCAGACTGAA
194 AGTAGCAAGGAAACAAATTCAAGCCACTAACCTTATCCCCCTAAGTAGCAGTGGAGCAAACTGAA
65002343 GATTGT
259 GATTGT
* * * * *
65002349 AGATCTTATCTCTATGAGGTAGCAATGGAGCAGATCGAGGACGACAAATCTTATCTCCCTAAGGC
1 AGATCTTATCTCCATGAGATAACAATGGAGCAGATCGAAGACGACAAATCTTATCTCCCTAAAGC
* * ** *
65002414 AGCAAGGGAGC-AGATTCAAGCCACTAGCCTTGTCTCCCTGAGCAGCAATAGAGCAGGCTGGAGA
66 AGCAAGGGAGCGA-ATTCAAGCCACTAGCCTTGTCTCACTGAACAGCAATAGAGCAAACTGAAGA
* * **
65002478 TTATAGATCTTATCTCCTTAAGCATTAGC-GGAGCAGATCGAAGACGAAAAATATTATCTTTCTG
130 TTATAGATCTTATCTCCATAAG--GTAGCAGGAGCAGATCGAAGACGAAAAATATTATCTCCCTG
* * * *
65002542 AGGTAGTAAGGAAACAAATTTAAGCCACTAGCCTTAT
193 AAGTAGCAAGGAAACAAATTCAAGCCACTAACCTTAT
65002579 TTTCCTAAAG
Statistics
Matches: 189, Mismatches: 38, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
265 58 0.31
266 127 0.67
268 4 0.02
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24
Consensus pattern (264 bp):
AGATCTTATCTCCATGAGATAACAATGGAGCAGATCGAAGACGACAAATCTTATCTCCCTAAAGC
AGCAAGGGAGCGAATTCAAGCCACTAGCCTTGTCTCACTGAACAGCAATAGAGCAAACTGAAGAT
TATAGATCTTATCTCCATAAGGTAGCAGGAGCAGATCGAAGACGAAAAATATTATCTCCCTGAAG
TAGCAAGGAAACAAATTCAAGCCACTAACCTTATCCCCCTAAGTAGCAGTGGAGCAAACTGAAGA
TTGT
Found at i:65002758 original size:44 final size:44
Alignment explanation
Indices: 65002672--65002782 Score: 136
Period size: 44 Copynumber: 2.5 Consensus size: 44
65002662 AGACGACGGA
*
65002672 CCTTATCTTCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACAAGT
1 CCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACAA-T
* *
65002717 -CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAAAGGCACAAT
1 CCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTC-AAGCCACAAT
** *
65002760 CCTTATCTCTTTAAAGTTGCAGT
1 CCTTATCTCCCTGAAGTTGCAGT
65002783 AGAATAGGAT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 3 0.05
44 55 0.95
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CCTTATCTCCCTGAAGTTGCAGTGAAGCAGATTCAAGCCACAAT
Found at i:65006100 original size:50 final size:51
Alignment explanation
Indices: 65006023--65006151 Score: 181
Period size: 50 Copynumber: 2.5 Consensus size: 51
65006013 GACCATGGCA
*
65006023 ACAAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGA-AAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAA-TG
* *
65006074 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
65006124 ACAAGTGAAAAGTGGTAGCTTCAGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
65006152 CTGATCAGTG
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:65006165 original size:31 final size:31
Alignment explanation
Indices: 65006127--65006275 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
65006117 ACAAATGACA
* *
65006127 AGTGAAAAGTGGTAGCTTCAGCTACCTGATC
1 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
* *
65006158 AGTGAAAAATGGTAGCTTCTGCTACCTAATC
1 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
* *
65006189 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
* *
65006220 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
*
65006251 AGTGAATAATGGTAGCTTCGGCTAC
1 AGTGAAAAATGGTAGCTTCGGCTAC
65006276 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (31 bp):
AGTGAAAAATGGTAGCTTCGGCTACCTGATC
Found at i:65010229 original size:22 final size:24
Alignment explanation
Indices: 65010188--65010853 Score: 240
Period size: 26 Copynumber: 26.7 Consensus size: 24
65010178 AAGAAAAATG
65010188 AAATAAATAATATAAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
*
65010212 AAATAAAT-A-ATAAGACAATTTTA
1 AAATAAATAATATAAAACAA-TTTA
*
65010235 AGTGAAT-AATATATAGAAAAACAAGTTTA
1 A---AATAAATA-ATA-TAAAACAA-TTTA
* *
65010264 AAATAGATACTATAAAAAGCAATTTA
1 AAATAAATAATAT-AAAA-CAATTTA
* *
65010290 AAATAAATAGTATCAAACAATTTA
1 AAATAAATAATATAAAACAATTTA
* *
65010314 AAATCATTAATATACAAAACAA--TA
1 AAATAAATAATAT--AAAACAATTTA
* * *
65010338 AAAT-AAT-ATATAGAGCAACTTA
1 AAATAAATAATATAAAACAATTTA
* *
65010360 AAATATAAT-TTATAAAAAAATTTA
1 AAATA-AATAATATAAAACAATTTA
* * * *
65010384 TAAT-AA-CATATAAAA-AGTTCA
1 AAATAAATAATATAAAACAATTTA
* *
65010405 AAATAAATAATATGTGAAAAATAAATCTA
1 AAATAAATAATA--T--AAAA-CAATTTA
* *
65010434 AAATAAATAATATATATAATAGTTTA
1 AAATAAATAATATA-A-AACAATTTA
* * **
65010460 ATATAAGTAATATATGA-AATCTTA
1 AAATAAATAATATAAAACAAT-TTA
65010484 AAATAAATAATAATAAAA-AGATTTA
1 AAATAAATAAT-ATAAAACA-ATTTA
* * * *
65010509 CAGTAAATAATAAAAAAGAATTTA
1 AAATAAATAATATAAAACAATTTA
* * * *
65010533 AATCAGTTAA-CATATAAAACAGTAT-
1 AA--A-TAAATAATATAAAACAATTTA
* * *
65010558 AACTAAATAAGATATAA-AA-TTA
1 AAATAAATAATATAAAACAATTTA
* * *
65010580 AAATAGATACTATATATATAATAGTTTA
1 AAATA-A-A-TA-ATATAAAACAATTTA
*
65010608 AAATAAATAATATATAAAAAATATTTA
1 AAATAAAT-A-ATATAAAACA-ATTTA
*
65010635 AAATAAATAATATGTAAAACAGTTTA
1 AAATAAATAATA--TAAAACAATTTA
* * *
65010661 AAATAACTAATGCA-AAAAAAACTTA
1 AAATAAATAAT--ATAAAACAATTTA
* *
65010686 AAATAAA-AATATAAAATAACTTA
1 AAATAAATAATATAAAACAATTTA
* *
65010709 AAATAATGTACA-ATAAAACAATTTG
1 AAATAA-ATA-ATATAAAACAATTTA
* * *
65010734 AAATGAATACTATAAAA-AATTTT
1 AAATAAATAATATAAAACAATTTA
* *
65010757 AAATAAATAATACATAAAATAGTTTA
1 AAATAAATAAT--ATAAAACAATTTA
* * * *
65010783 AAAGAACTAATATGTAAAAAAAATCTA
1 AAATAAATAATA--T-AAAACAATTTA
*
65010810 AAATAAATAATATATAAAACTATTTA
1 AAATAAAT-A-ATATAAAACAATTTA
65010836 AAATAATATATATATAAA
1 AAATAA-ATA-ATATAAA
65010854 TAAAATAAAT
Statistics
Matches: 482, Mismatches: 97, Indels: 124
0.69 0.14 0.18
Matches are distributed among these distances:
20 5 0.01
21 8 0.02
22 38 0.08
23 50 0.10
24 84 0.17
25 70 0.15
26 133 0.28
27 54 0.11
28 11 0.02
29 29 0.06
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (24 bp):
AAATAAATAATATAAAACAATTTA
Found at i:65010268 original size:26 final size:24
Alignment explanation
Indices: 65010188--65010399 Score: 102
Period size: 24 Copynumber: 8.7 Consensus size: 24
65010178 AAGAAAAATG
*
65010188 AAATAA-ATAATATAAAACAATTTA
1 AAATAATAT-ATAAAAAACAATTTA
* *
65010212 AAATAA-ATA-ATAAGACAATTTTA
1 AAATAATATATAAAAAACAA-TTTA
65010235 AGTGAATAATATATAGAAAAACAAGTTTA
1 A---AATAATATATA-AAAAACAA-TTTA
*
65010264 AAATAGATACTATAAAAAGCAATTTA
1 AAATA-ATA-TATAAAAAACAATTTA
**
65010290 AAATAA-ATAGTATCAAACAATTTA
1 AAATAATATA-TAAAAAACAATTTA
* *
65010314 AAATCATTAATATACAAAACAA--TA
1 AAAT-AAT-ATATAAAAAACAATTTA
* * *
65010338 AAATAATATAT--AGAGCAACTTA
1 AAATAATATATAAAAAACAATTTA
*
65010360 AAAT-ATAATTTATAAAAA-AATTTA
1 AAATAAT-ATATA-AAAAACAATTTA
* *
65010384 TAATAACATATAAAAA
1 AAATAATATATAAAAA
65010400 GTTCAAAATA
Statistics
Matches: 147, Mismatches: 21, Indels: 41
0.70 0.10 0.20
Matches are distributed among these distances:
20 5 0.03
21 2 0.01
22 21 0.14
23 14 0.10
24 42 0.29
25 5 0.03
26 26 0.18
27 16 0.11
28 5 0.03
29 11 0.07
ACGTcount: A:0.60, C:0.06, G:0.05, T:0.29
Consensus pattern (24 bp):
AAATAATATATAAAAAACAATTTA
Found at i:65010760 original size:23 final size:24
Alignment explanation
Indices: 65010686--65010765 Score: 65
Period size: 23 Copynumber: 3.4 Consensus size: 24
65010676 AAAAAACTTA
* * * *
65010686 AAATAAA-AATATAAAATAACTTA
1 AAATAAATACTATAAAACAATTTG
* *
65010709 AAATAATGTACAATAAAACAATTTG
1 AAATAA-ATACTATAAAACAATTTG
* *
65010734 AAATGAATACTATAAAA-AATTTT
1 AAATAAATACTATAAAACAATTTG
65010757 AAATAAATA
1 AAATAAATA
65010766 ATACATAAAA
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
23 19 0.43
24 9 0.20
25 16 0.36
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (24 bp):
AAATAAATACTATAAAACAATTTG
Found at i:65010859 original size:53 final size:53
Alignment explanation
Indices: 65010747--65010859 Score: 140
Period size: 53 Copynumber: 2.1 Consensus size: 53
65010737 TGAATACTAT
* * *
65010747 AAAAAATTTTAAATAAATAATACATAAAATAGTTTAAAAGAACTAATATGTAA
1 AAAAAATCTAAAATAAATAATACATAAAATAGTTTAAAAGAACTAATATATAA
* *
65010800 AAAAAATCTAAAATAAATAATATATAAAACTA-TTTAAAATAA-TATATATATAA
1 AAAAAATCTAAAATAAATAATACATAAAA-TAGTTTAAAAGAACTA-ATATATAA
*
65010853 ATAAAAT
1 AAAAAAT
65010860 AAATAAGTAA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
52 2 0.04
53 48 0.92
54 2 0.04
ACGTcount: A:0.63, C:0.04, G:0.03, T:0.31
Consensus pattern (53 bp):
AAAAAATCTAAAATAAATAATACATAAAATAGTTTAAAAGAACTAATATATAA
Found at i:65020891 original size:11 final size:11
Alignment explanation
Indices: 65020877--65020928 Score: 68
Period size: 11 Copynumber: 4.5 Consensus size: 11
65020867 AGATAAATAT
65020877 TATTTTATTAA
1 TATTTTATTAA
65020888 TATTTTATTAA
1 TATTTTATTAA
*
65020899 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
65020912 TATTTTATTAT
1 TATTTTATTAA
65020923 TATTTT
1 TATTTT
65020929 TTTATTATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
11 23 0.64
12 6 0.17
13 7 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:65020933 original size:11 final size:11
Alignment explanation
Indices: 65020874--65020937 Score: 65
Period size: 11 Copynumber: 5.6 Consensus size: 11
65020864 ATTAGATAAA
65020874 TATTATTTTAT
1 TATTATTTTAT
*
65020885 TAATATTTTAT
1 TATTATTTTAT
*
65020896 TAATATTTTAAT
1 TATTATTTT-AT
* *
65020908 AAGATATTTTAT
1 TA-TTATTTTAT
*
65020920 TATTATTTTTT
1 TATTATTTTAT
65020931 TATTATT
1 TATTATT
65020938 ACTGGGCCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
11 33 0.72
12 6 0.13
13 7 0.15
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.66
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:65024116 original size:46 final size:46
Alignment explanation
Indices: 65024064--65024271 Score: 283
Period size: 46 Copynumber: 4.5 Consensus size: 46
65024054 GCTTTCTGAA
** *
65024064 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** *
65024110 ATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
**
65024156 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
65024202 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * *
65024248 A-GAAAATGAGTAAGATCATAGTTG
1 ATG-AAATGAATAAGACCATGGTTG
65024272 TGACACTATG
Statistics
Matches: 146, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 145 0.99
ACGTcount: A:0.41, C:0.13, G:0.25, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:65026069 original size:42 final size:42
Alignment explanation
Indices: 65026023--65026277 Score: 228
Period size: 48 Copynumber: 5.6 Consensus size: 42
65026013 CATATTTCAA
* * *
65026023 CTATGGTCTTACACATCTTCACATAAT-GTTGCCATAGTCCAG
1 CTATGGTCTTACACATATTCACAT-ATCGATGCCATAGCCCAG
65026065 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
*
65026107 CTATGGTCGTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT---AT-TCACATATCGATGCCATAGCCCAG
* * *
65026156 TTATGGTCTTACACAGATCACATATCACATATCGATGCCATAACCCAA
1 CTATGGTCTTACAC--AT---AT-TCACATATCGATGCCATAGCCCAG
*
65026204 CTATGGTCTTACACGGATCACATATCACATATCGATGCCATAGCCTAG
1 CTATGGTCTTACAC--AT---AT-TCACATATCGATGCCATAGCCCAG
65026252 CTATGGTCTTACACGA-A-TCACATATC
1 CTATGGTCTTACAC-ATATTCACATATC
65026278 TCACTGATGC
Statistics
Matches: 190, Mismatches: 15, Indels: 17
0.86 0.07 0.08
Matches are distributed among these distances:
41 11 0.06
42 49 0.26
43 1 0.01
45 2 0.01
47 2 0.01
48 89 0.47
49 36 0.19
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (42 bp):
CTATGGTCTTACACATATTCACATATCGATGCCATAGCCCAG
Found at i:65026195 original size:48 final size:49
Alignment explanation
Indices: 65026076--65026429 Score: 366
Period size: 48 Copynumber: 7.2 Consensus size: 49
65026066 TATGGTCTTA
*
65026076 CACATATTCACATATCGATGCCATAGCCCAGCTATGGTCGTACAC-GTAAT
1 CACATA-TCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAG-AAT
*
65026126 CACATATCACATATCGATGCCATAGCCCAGTTATGGTCTTACACAG-AT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* * *
65026174 CACATATCACATATCGATGCCATAACCCAACTATGGTCTTACAC-GGAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
*
65026222 CACATATCACATATCGATGCCATAGCCTAGCTATGGTCTTACAC-GAAT
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* * * * * * *
65026270 CACATATCTCA-CT-GATGCCATACCCCAGATATGGTCTTATACAGTAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* * * * * ** *
65026317 CATATATCACA-CT-GATGTCATATCCCAGATATGGTCTTATGCAGAAG
1 CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
* *
65026364 CACATAATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATA-AGGAAAT
1 CACAT-ATCACA--TAT-CGATGCCATAGCCCAGCTATGGTCTTACACA-G-AAT
65026418 CACATATCACAT
1 CACATATCACAT
65026430 GTTGTCATGG
Statistics
Matches: 264, Mismatches: 29, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
46 25 0.09
47 49 0.19
48 105 0.40
49 36 0.14
50 7 0.03
51 3 0.01
52 1 0.00
53 31 0.12
54 7 0.03
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (49 bp):
CACATATCACATATCGATGCCATAGCCCAGCTATGGTCTTACACAGAAT
Found at i:65026403 original size:53 final size:52
Alignment explanation
Indices: 65026267--65026410 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 52
65026257 GTCTTACACG
* *
65026267 AATCACATATCTCACTGATGCCATACCCCAGATATGGTCTTATACAGTAGCATAT
1 AATCACAT-TCTC-C-GATGCCATACCCCAGATATGGTCTTATACAGAAGCACAT
* * *
65026322 -ATCACA--CT--GATGTCATATCCCAGATATGGTCTTATGCAGAAGCACAT
1 AATCACATTCTCCGATGCCATACCCCAGATATGGTCTTATACAGAAGCACAT
* *
65026369 AATCACATCTCTCCGATGCCATAGCCCAGCTATGGTCTTATA
1 AATCACAT-TCTCCGATGCCATACCCCAGATATGGTCTTATA
65026411 AGGAAATCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 14
0.76 0.09 0.14
Matches are distributed among these distances:
47 34 0.46
48 6 0.08
51 4 0.05
53 24 0.32
54 6 0.08
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (52 bp):
AATCACATTCTCCGATGCCATACCCCAGATATGGTCTTATACAGAAGCACAT
Found at i:65030058 original size:22 final size:21
Alignment explanation
Indices: 65030019--65030063 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
65030009 CAAAACCATG
*
65030019 AACCTTAAATCTAGAATCTCAA
1 AACCTTAAATCTAAAATC-CAA
65030041 AACCTTAAA-CTCAAAATCCAA
1 AACCTTAAATCT-AAAATCCAA
65030062 AA
1 AA
65030064 ATTGAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.51, C:0.24, G:0.02, T:0.22
Consensus pattern (21 bp):
AACCTTAAATCTAAAATCCAA
Found at i:65030201 original size:27 final size:27
Alignment explanation
Indices: 65030137--65030206 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
65030127 TTGTAACCTT
*
65030137 GAACTCTAAA-CTTAAATCTTGAATCCC
1 GAAC-CTAAACCTTAAATCTTAAATCCC
* * **
65030164 GAACTTGAACCTTAAATCTTAAATTTC
1 GAACCTAAACCTTAAATCTTAAATCCC
*
65030191 GAACCTAAACCCTAAA
1 GAACCTAAACCTTAAA
65030207 CCTCGAGGTT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 3 0.09
27 31 0.91
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (27 bp):
GAACCTAAACCTTAAATCTTAAATCCC
Found at i:65031468 original size:28 final size:28
Alignment explanation
Indices: 65031436--65031499 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
65031426 ATGTTTATGT
* *
65031436 GAATTTTTAAATATTGTTAACACTGTTA
1 GAATTTTTAAAAATTATTAACACTGTTA
* *
65031464 GAATTTTTAAAAATTATTAATATTGTTA
1 GAATTTTTAAAAATTATTAACACTGTTA
*
65031492 AAATTTTT
1 GAATTTTT
65031500 TATCAAATCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.03, G:0.08, T:0.50
Consensus pattern (28 bp):
GAATTTTTAAAAATTATTAACACTGTTA
Found at i:65032700 original size:12 final size:12
Alignment explanation
Indices: 65032669--65032719 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
65032659 CAAAAACAAT
65032669 ATAA-AAATGAA
1 ATAATAAATGAA
*
65032680 ATAAATAAATAAA
1 AT-AATAAATGAA
*
65032693 ATAATAAA-GGA
1 ATAATAAATGAA
65032704 ATAATAAATGAA
1 ATAATAAATGAA
65032716 ATAA
1 ATAA
65032720 CAAAGAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
11 11 0.33
12 14 0.42
13 8 0.24
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.22
Consensus pattern (12 bp):
ATAATAAATGAA
Found at i:65032816 original size:3 final size:3
Alignment explanation
Indices: 65032808--65032954 Score: 91
Period size: 3 Copynumber: 49.3 Consensus size: 3
65032798 ATGACTTACA
* * ** * * *
65032808 AAT AAT AAT TAT AAT AAA AAT AAT AGC AAT AAT AAT GAT GAT ACT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * **
65032855 AAT GAT AAT AAT AAT AGT AAT AAT AAT AAT ACT AAC GAT AAT AAT AGC
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
65032903 AAT AAT AAT AAA AAT AGA- AAT CAT AAT AGT AGT AAT AAC ACT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT
65032948 AAT AAT A
1 AAT AAT A
65032955 GGAATAATCA
Statistics
Matches: 105, Mismatches: 36, Indels: 6
0.71 0.24 0.04
Matches are distributed among these distances:
2 2 0.02
3 102 0.97
4 1 0.01
ACGTcount: A:0.59, C:0.05, G:0.07, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:65035362 original size:21 final size:21
Alignment explanation
Indices: 65035324--65035363 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
65035314 ATTTTTAAAT
*
65035324 TTTAAAAAATTATAAAAATTA
1 TTTAAAAAAGTATAAAAATTA
* *
65035345 TTTAAAAAGGTATGAAAAT
1 TTTAAAAAAGTATAAAAAT
65035364 AAAAAAAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.35
Consensus pattern (21 bp):
TTTAAAAAAGTATAAAAATTA
Found at i:65037285 original size:36 final size:37
Alignment explanation
Indices: 65037231--65037313 Score: 123
Period size: 36 Copynumber: 2.2 Consensus size: 37
65037221 GTTGACGGAA
*
65037231 GAGATATTGAGATAGAGGAGGTGGATGGAAGCCATGTT
1 GAGATATT-AGATAGAGGAGGAGGATGGAAGCCATGTT
**
65037269 GAGATATTA-ATAGAGGAGGAGGATGGAAGGGATGTT
1 GAGATATTAGATAGAGGAGGAGGATGGAAGCCATGTT
65037305 GAGATATTA
1 GAGATATTA
65037314 TAGTTATTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
36 33 0.79
37 1 0.02
38 8 0.19
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (37 bp):
GAGATATTAGATAGAGGAGGAGGATGGAAGCCATGTT
Found at i:65038530 original size:20 final size:21
Alignment explanation
Indices: 65038492--65038535 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
65038482 CCTTCTATAG
65038492 AAAAATTAAATTTAA-TTTTA
1 AAAAATTAAATTTAATTTTTA
*
65038512 AAAAATTAAA-TTAATTTTTT
1 AAAAATTAAATTTAATTTTTA
65038532 AAAA
1 AAAA
65038536 GATAAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
AAAAATTAAATTTAATTTTTA
Found at i:65038535 original size:19 final size:20
Alignment explanation
Indices: 65038492--65038529 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
65038482 CCTTCTATAG
65038492 AAAAATTAAATTTAATTTTA
1 AAAAATTAAATTTAATTTTA
65038512 AAAAATTAAA-TTAATTTT
1 AAAAATTAAATTTAATTTT
65038530 TTAAAAGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAAATTAAATTTAATTTTA
Found at i:65038893 original size:13 final size:14
Alignment explanation
Indices: 65038877--65038906 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
65038867 AGAAAATAAC
65038877 TTTC-GAAAAATGA
1 TTTCTGAAAAATGA
65038890 TTTCTGAAAAATGA
1 TTTCTGAAAAATGA
65038904 TTT
1 TTT
65038907 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (14 bp):
TTTCTGAAAAATGA
Found at i:65039534 original size:22 final size:21
Alignment explanation
Indices: 65039487--65039541 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
65039477 AATAAAATTG
*
65039487 AAATATTAAA-TA-ATTTATT
1 AAATAATAAATTATATTTATT
65039506 AAATAATAAATTATATTTATT
1 AAATAATAAATTATATTTATT
* *
65039527 ATACTAATAATTTAT
1 A-AATAATAAATTAT
65039542 TAAATGACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.30
20 2 0.07
21 8 0.27
22 11 0.37
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (21 bp):
AAATAATAAATTATATTTATT
Found at i:65039558 original size:22 final size:21
Alignment explanation
Indices: 65039496--65039569 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 21
65039486 GAAATATTAA
*
65039496 ATAATTTATTAAATAATAAAT
1 ATAATTTATTAAATACTAAAT
65039517 -TATATTTATT--ATACT--A-
1 ATA-ATTTATTAAATACTAAAT
65039533 ATAATTTATTAAATGACTAAAT
1 ATAATTTATTAAAT-ACTAAAT
* *
65039555 ATAAATAATTAAATA
1 ATAATTTATTAAATA
65039570 TGTATGTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 16
0.69 0.05 0.26
Matches are distributed among these distances:
16 7 0.17
17 3 0.07
18 2 0.05
19 7 0.17
20 2 0.05
21 9 0.21
22 12 0.29
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (21 bp):
ATAATTTATTAAATACTAAAT
Found at i:65041044 original size:34 final size:35
Alignment explanation
Indices: 65041005--65041077 Score: 96
Period size: 34 Copynumber: 2.1 Consensus size: 35
65040995 CCTATAGTTT
65041005 TTTAGGG-TTAGGATTTTGGTAAAAATAAGTTA-GG
1 TTTAGGGTTTAGG-TTTTGGTAAAAATAAGTTAGGG
* * *
65041039 TTTAGGGTTTAGGTTTTTGTTAAAATAGGTTAGGG
1 TTTAGGGTTTAGGTTTTGGTAAAAATAAGTTAGGG
65041074 TTTA
1 TTTA
65041078 AAAAGTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 23 0.68
35 11 0.32
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (35 bp):
TTTAGGGTTTAGGTTTTGGTAAAAATAAGTTAGGG
Found at i:65041275 original size:99 final size:98
Alignment explanation
Indices: 65041172--65041751 Score: 333
Period size: 99 Copynumber: 5.6 Consensus size: 98
65041162 AATTTAGGAC
* * *
65041172 TTAGGGTTTATAGTTTTAAACAAATTAAGTAAATTAGGATTCTAGGATTTTAAATAAATTAAGTT
1 TTAGGGTTTATATTTTTAAA-AAATTAAGTAAATTAGGGTTTTAGGATTTTAAATAAATTAAGTT
65041237 AATGTTTAAAATAAATTAAATTAGGGTTATTAAA
65 AATGTTTAAAATAAATTAAATTAGGGTTATTAAA
* * *
65041271 TTAGGATTTAT-TTTTATAAATAGATTAAGTTAATTAGGGTTTTAAGG-TTTTAAATAAATTAAG
1 TTAGGGTTTATATTTT-TAAA-AAATTAAGTAAATTAGGGTTTT-AGGATTTTAAATAAATTAAG
*
65041334 TTAGA-GTTTAAAATAGATTAAATTAGCGTTTTGAGTTTATTAAA
63 TTA-ATGTTTAAAATAAATTAAATTA--G----G-G-TTATTAAA
** *
65041378 TTAGGGTTTATATTTTTTGGTTAAAATTAATTAAATTAGGGTTTTAGGATTTTAAATAAA-T---
1 TTAGGGTTTATA-TTTTT--AAAAAATTAAGTAAATTAGGGTTTTAGGATTTTAAATAAATTAAG
* *
65041439 TTAGTGTTTAAAATAAATTAAATTAGGGTTTTGGGTTTATCAAA
63 TTAATGTTTAAAATAAATTAAATTA-------GGG-TTATTAAA
* * * *
65041483 TTAGGGTTTATGTGTTTTAGTTAAAATTAATTAAATTAGGGTTATAAGG-TTTTAAATAAATTAA
1 TTAGGGTTTATAT-TTTTA--AAAAATTAAGTAAATTAGGGTT-TTAGGATTTTAAATAAATTAA
** * *** * *
65041547 GTTAGGGTTTAAATTAGGGGT---TT-GGATTTATCAAA
62 GTTAATGTTTAAAATA-AATTAAATTAGG-GTTATTAAA
* * * *
65041582 TTAGGGCTTT-TATTTTTTAAATAGATTAAGTAAATTAGGGCTCTAAGG-CTTTAAATAAATTAA
1 TTAGGG-TTTATA-TTTTTAAA-AAATTAAGTAAATTAGGG-TTTTAGGATTTTAAATAAATTAA
** * **
65041645 GTTAGGGTTTAAAGTAAATTAAATTAAGGTTCTGGGTTAGCAAA
62 GTTAATGTTTAAAATAAATTAAATT-A------GGGTTATTAAA
* * * * *
65041689 TTAGGGCTTATGTTTTTTAAATAGATTGAGTAAATTAGGGTTTTAGGGTTTTAAATAAATTAA
1 TTAGGGTTTAT-ATTTTTAAA-AAATTAAGTAAATTAGGGTTTTAGGATTTTAAATAAATTAA
65041752 ATTAGGGTTT
Statistics
Matches: 385, Mismatches: 46, Indels: 92
0.74 0.09 0.18
Matches are distributed among these distances:
97 2 0.01
98 53 0.14
99 93 0.24
100 10 0.03
101 1 0.00
104 1 0.00
105 80 0.21
106 14 0.04
107 74 0.19
108 7 0.02
109 47 0.12
110 3 0.01
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (98 bp):
TTAGGGTTTATATTTTTAAAAAATTAAGTAAATTAGGGTTTTAGGATTTTAAATAAATTAAGTTA
ATGTTTAAAATAAATTAAATTAGGGTTATTAAA
Found at i:65041347 original size:22 final size:22
Alignment explanation
Indices: 65041317--65041364 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
65041307 GGGTTTTAAG
* *
65041317 GTTTTAAATAAATTAAGTTAGA
1 GTTTAAAATAAATTAAATTAGA
* *
65041339 GTTTAAAATAGATTAAATTAGC
1 GTTTAAAATAAATTAAATTAGA
65041361 GTTT
1 GTTT
65041365 TGAGTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.42
Consensus pattern (22 bp):
GTTTAAAATAAATTAAATTAGA
Found at i:65041376 original size:107 final size:108
Alignment explanation
Indices: 65041263--65041762 Score: 461
Period size: 107 Copynumber: 4.8 Consensus size: 108
65041253 TAAATTAGGG
* *
65041263 TTATTAAATTAGGATTTAT-TTTTATAAATAGATTAAGTTAATTAGGGTTTTAAGGTTTTAAATA
1 TTATCAAATTAGGGTTTATGTTTTATAAATAGATTAAGTTAATTAGGGTTTTAAGGTTTTAAATA
* * *
65041327 AATTAAGTTAGAGTTTAAAATAGATTAAATTAGCGTTTTGAGT
66 AATTAAGTTAGGGTTTAAAATAAATTAAATTAGGGTTTTGAGT
* * * *** *
65041370 TTATTAAATTAGGGTTTATATTTTTTGGTTAAAATTAA-TTAAATTAGGGTTTT-AGGATTTTAA
1 TTATCAAATTAGGGTTTATGTTTTATAAAT-AGATTAAGTT-AATTAGGGTTTTAAGG-TTTTAA
* *
65041433 ATAAA-T---TTAGTGTTTAAAATAAATTAAATTAGGGTTTTGGGT
63 ATAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGGGTTTTGAGT
* *
65041475 TTATCAAATTAGGGTTTATGTGTTTTAGTTAA-A-ATTAA-TTAAATTAGGGTTATAAGGTTTTA
1 TTATCAAATTAGGGTTTA--TGTTTTA-TAAATAGATTAAGTT-AATTAGGGTTTTAAGGTTTTA
* *
65041537 AATAAATTAAGTTAGGG-TT----TAAATT--A--GGGGTTTGGA-T
62 AATAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGGGTTTTGAGT
* * * *
65041574 TTATCAAATTAGGGCTTTTAT-TTTT-TAAATAGATTAAGTAAATTAGGGCTCTAAGGCTTTAAA
1 TTATCAAATTAGGG--TTTATGTTTTATAAATAGATTAAGTTAATTAGGGTTTTAAGGTTTTAAA
* * * *
65041637 TAAATTAAGTTAGGGTTTAAAGTAAATTAAATTAAGGTTCTG-GG
64 TAAATTAAGTTAGGGTTTAAAATAAATTAAATTAGGGTTTTGAGT
* * * * * *
65041681 TTAGCAAATTAGGGCTTATGTTTTTTAAATAGATTGAGTAAATTAGGGTTTTAGGGTTTTAAATA
1 TTATCAAATTAGGGTTTATGTTTTATAAATAGATTAAGTTAATTAGGGTTTTAAGGTTTTAAATA
*
65041746 AATTAAATTAGGGTTTA
66 AATTAAGTTAGGGTTTA
65041763 GTTTTTTTAA
Statistics
Matches: 325, Mismatches: 39, Indels: 58
0.77 0.09 0.14
Matches are distributed among these distances:
96 3 0.01
97 1 0.00
98 44 0.14
99 19 0.06
100 7 0.02
101 4 0.01
102 1 0.00
103 6 0.02
104 6 0.02
105 84 0.26
106 9 0.03
107 92 0.28
108 15 0.05
109 34 0.10
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.44
Consensus pattern (108 bp):
TTATCAAATTAGGGTTTATGTTTTATAAATAGATTAAGTTAATTAGGGTTTTAAGGTTTTAAATA
AATTAAGTTAGGGTTTAAAATAAATTAAATTAGGGTTTTGAGT
Found at i:65041484 original size:105 final size:103
Alignment explanation
Indices: 65041325--65041749 Score: 380
Period size: 105 Copynumber: 4.1 Consensus size: 103
65041315 AGGTTTTAAA
* * * * * *
65041325 TAAATTAAGTTAGAGTTTAAAATAGATTAAATTAGCGTTTTGAGTTTATTAAATTAGGGTTTATA
1 TAAATAAATTTAGAGTTTAAAATAAATTAAATTAGGGTTTTGGGTTTATCAAATTAGGGTTTATA
***
65041390 TTTTTTGGTTAAAATTAATTAAATTAGGGTTTTAGGATTT
66 TTTTTTAAAT-AAATTAATTAAATTAGGGTTTTAGG-TTT
* *
65041430 TAAATAAATTTAGTGTTTAAAATAAATTAAATTAGGGTTTTGGGTTTATCAAATTAGGGTTTATG
1 TAAATAAATTTAGAGTTTAAAATAAATTAAATTAGGGTTTTGGGTTTATCAAATTAGGGTTTATA
* ** *
65041495 TGTTTTAGTTAAAATTAATTAAATTAGGGTTATAAGGTTT
66 TTTTTTAAAT-AAATTAATTAAATTAGGGTT-TTAGGTTT
*** * *
65041535 TAAATAAA-TTA-AG-TTAGGGT---TTAAATTAGGGGTTTGGATTTATCAAATTAGGGCTTT-T
1 TAAATAAATTTAGAGTTTAAAATAAATTAAATTAGGGTTTTGGGTTTATCAAATTAGGG-TTTAT
* * * * *
65041593 ATTTTTTAAATAGATTAAGTAAATTAGGGCTCTAAGGCTT
65 ATTTTTTAAATAAATTAATTAAATTAGGG-TTTTAGGTTT
* * * * * *
65041633 TAAATAAATTAAGTTAGGGTTTAAAGTAAATTAAATTAAGGTTCTGGG-TTAGCAAATTAGGGCT
1 TAAATAAA-T---TTAGAGTTTAAAATAAATTAAATTAGGGTTTTGGGTTTATCAAATTAGGGTT
* * * *
65041697 TATGTTTTTTAAATAGATTGAGTAAATTAGGGTTTTAGGGTTT
62 TATATTTTTTAAATAAATTAATTAAATTAGGGTTTTA-GGTTT
65041740 TAAATAAATT
1 TAAATAAATT
65041750 AAATTAGGGT
Statistics
Matches: 266, Mismatches: 39, Indels: 32
0.79 0.12 0.09
Matches are distributed among these distances:
98 31 0.12
99 40 0.15
100 3 0.01
102 4 0.02
103 5 0.02
104 4 0.02
105 102 0.38
106 10 0.04
107 53 0.20
108 14 0.05
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (103 bp):
TAAATAAATTTAGAGTTTAAAATAAATTAAATTAGGGTTTTGGGTTTATCAAATTAGGGTTTATA
TTTTTTAAATAAATTAATTAAATTAGGGTTTTAGGTTT
Found at i:65041603 original size:21 final size:22
Alignment explanation
Indices: 65041554--65041603 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
65041544 TAAGTTAGGG
*
65041554 TTTAAATTAGGGGTTTGGATTT
1 TTTAAATTAGGGCTTTGGATTT
* * *
65041576 ATCAAATTAGGGCTTT-TATTT
1 TTTAAATTAGGGCTTTGGATTT
65041597 TTTAAAT
1 TTTAAAT
65041604 AGATTAAGTA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.28, C:0.04, G:0.18, T:0.50
Consensus pattern (22 bp):
TTTAAATTAGGGCTTTGGATTT
Found at i:65041665 original size:22 final size:21
Alignment explanation
Indices: 65041625--65041675 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
65041615 ATTAGGGCTC
*
65041625 TAAGGCTTTAAATAAATTAAGT
1 TAAGG-TTTAAATAAATTAAAT
*
65041647 TAGGGTTTAAAGTAAATTAAAT
1 TAAGGTTTAAA-TAAATTAAAT
65041669 TAAGGTT
1 TAAGGTT
65041676 CTGGGTTAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 6 0.24
22 19 0.76
ACGTcount: A:0.43, C:0.02, G:0.18, T:0.37
Consensus pattern (21 bp):
TAAGGTTTAAATAAATTAAAT
Found at i:65041771 original size:30 final size:30
Alignment explanation
Indices: 65041719--65041798 Score: 76
Period size: 30 Copynumber: 2.7 Consensus size: 30
65041709 ATAGATTGAG
** * *
65041719 TAAATTAGGGTTTTAG-GGTTTTAAATAAAT
1 TAAATTAGGG-TTTAGTTTTTTTAAAAAAAA
65041749 TAAATTAGGGTTTAGTTTTTTTAAAAAAAA
1 TAAATTAGGGTTTAGTTTTTTTAAAAAAAA
*
65041779 TAACATT-GTGTTTA-TTTTTT
1 TAA-ATTAGGGTTTAGTTTTTT
65041799 AACAAAATTG
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
29 11 0.26
30 29 0.67
31 3 0.07
ACGTcount: A:0.35, C:0.01, G:0.15, T:0.49
Consensus pattern (30 bp):
TAAATTAGGGTTTAGTTTTTTTAAAAAAAA
Found at i:65042046 original size:126 final size:125
Alignment explanation
Indices: 65041821--65042191 Score: 530
Period size: 126 Copynumber: 2.9 Consensus size: 125
65041811 TATTTTTACT
* *
65041821 CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACACTTCAAGCAGGATG
1 CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATG
*
65041886 TACTGTCAGCAAAAATACAA-AAAAAAGCTCCCACGTAGACACTCTTTTGCTACAATAGTTC
66 TAATGTCAGCAAAAATA-AAGAAAAAAGCTCCCACGT-GACACTCTTTTGCTACAATAGTTC
*
65041947 CTGAAAAAATAATTTTGAG-AGAACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGTAGGAT
1 CTGAAAAAATAATTTTGAGAAG-ACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGAT
*
65042011 GTAATGTCAGCAAAAATAAAGAAAAAAGCTCCCACGTGGACACTCTTTTGCTACAATAGTTT
65 GTAATGTCAGCAAAAATAAAGAAAAAAGCTCCCACGT-GACACTCTTTTGCTACAATAGTTC
* * * * * * * *
65042073 TTGAAAAAATAATTTTTAGAAGATGTATCTGAATAAATAGTATCAAAAACGGTTCAAGAAAGATG
1 CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATG
* * * *
65042138 CAATGTCAGCAAAAATACAGAAAAAAGCTCCCACGTGAACGCTCTTTTTCTACA
66 TAATGTCAGCAAAAATAAAGAAAAAAGCTCCCACGTG-ACACTCTTTTGCTACA
65042192 GCAATTCATG
Statistics
Matches: 223, Mismatches: 18, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
125 5 0.02
126 216 0.97
127 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.26
Consensus pattern (125 bp):
CTGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGAAGGATG
TAATGTCAGCAAAAATAAAGAAAAAAGCTCCCACGTGACACTCTTTTGCTACAATAGTTC
Found at i:65047561 original size:6 final size:6
Alignment explanation
Indices: 65047550--65047574 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
65047540 AACGATGCTT
65047550 TAAATA TAAATA TAAATA TAAATA T
1 TAAATA TAAATA TAAATA TAAATA T
65047575 GACAAAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TAAATA
Found at i:65048747 original size:20 final size:19
Alignment explanation
Indices: 65048704--65048747 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
65048694 AATGACTTTT
*
65048704 TTTTAATATTTAAAATATA
1 TTTTAATATTTAAAATAAA
* *
65048723 GTTTATATATTTAAATTAAA
1 TTTTA-ATATTTAAAATAAA
65048743 TTTTA
1 TTTTA
65048748 CAAAAACTTC
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (19 bp):
TTTTAATATTTAAAATAAA
Found at i:65049648 original size:19 final size:19
Alignment explanation
Indices: 65049624--65049675 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 19
65049614 AAAAAAAGCG
65049624 AATAAAATTTTTTACAAAA-
1 AATAAAATTTTTT-CAAAAT
*
65049643 AATAAAATTTCTTCAAAAT
1 AATAAAATTTTTTCAAAAT
65049662 AAGTGAAAATTTTT
1 AA-T-AAAATTTTT
65049676 CTCTTTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 5 0.18
19 14 0.50
20 1 0.04
21 8 0.29
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (19 bp):
AATAAAATTTTTTCAAAAT
Found at i:65050454 original size:24 final size:24
Alignment explanation
Indices: 65050421--65050466 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
65050411 TTTTATATTA
65050421 ATATTAATATTAAATAAATATAATT
1 ATATTAATATTAAATAAA-ATAATT
65050446 ATATT-ATATTAAATAAAATAA
1 ATATTAATATTAAATAAAATAA
65050467 AAATCGCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 4 0.19
24 12 0.57
25 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
ATATTAATATTAAATAAAATAATT
Found at i:65050536 original size:26 final size:25
Alignment explanation
Indices: 65050505--65050562 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
65050495 CCACCACTGT
*
65050505 ACTTCAACAT-CCATCTTTCCATGCAA
1 ACTTCAACATGCCATC-GTCC-TGCAA
65050531 ACTTCAA-ATGCCATCGTCCTGCAA
1 ACTTCAACATGCCATCGTCCTGCAA
*
65050555 ATTTCAAC
1 ACTTCAAC
65050563 CTCCCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
24 11 0.39
25 5 0.18
26 12 0.43
ACGTcount: A:0.31, C:0.33, G:0.07, T:0.29
Consensus pattern (25 bp):
ACTTCAACATGCCATCGTCCTGCAA
Found at i:65050962 original size:25 final size:24
Alignment explanation
Indices: 65050925--65050973 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
65050915 GGTGGGGGGT
*
65050925 TTATTTTCTTTAATACTAATATAA
1 TTATTTTATTTAATACTAATATAA
*
65050949 TTATATTTATTTAATATTAATATAA
1 TTAT-TTTATTTAATACTAATATAA
65050974 ATACAAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (24 bp):
TTATTTTATTTAATACTAATATAA
Found at i:65053288 original size:28 final size:28
Alignment explanation
Indices: 65053227--65053288 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
65053217 TAACTCAAAT
* * *
65053227 AATTTAATTAAGTATAAAAATAATCTAT
1 AATTTAATTAAATATAAAAATAACCTAA
** *
65053255 TTTTTAATTAAATATTAAAATAACCTAA
1 AATTTAATTAAATATAAAAATAACCTAA
65053283 AATTTA
1 AATTTA
65053289 CAGTAAAAAT
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (28 bp):
AATTTAATTAAATATAAAAATAACCTAA
Found at i:65053533 original size:17 final size:16
Alignment explanation
Indices: 65053513--65053581 Score: 57
Period size: 18 Copynumber: 3.9 Consensus size: 16
65053503 TTTCTTTTCT
65053513 TTTTTTTAACTTTTATA
1 TTTTTTTAA-TTTTATA
* *
65053530 TTTTTCTTTAATTTTTTCC
1 -TTTT-TTTAATTTTAT-A
65053549 TTTTTTTAAGTTTTATA
1 TTTTTTTAA-TTTTATA
*
65053566 TTTTTTCTTATTTTAT
1 TTTTTT-TAATTTTAT
65053582 TTTGTTTATT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
17 17 0.40
18 20 0.48
19 5 0.12
ACGTcount: A:0.17, C:0.07, G:0.01, T:0.74
Consensus pattern (16 bp):
TTTTTTTAATTTTATA
Found at i:65053604 original size:14 final size:14
Alignment explanation
Indices: 65053564--65053611 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
65053554 TTAAGTTTTA
*
65053564 TATTTTTTCTTATT
1 TATTTTTTGTTATT
*
65053578 T-TATTTTGTTTATT
1 TATTTTTTG-TTATT
65053592 TATTTTTTGTTATT
1 TATTTTTTGTTATT
*
65053606 AATTTT
1 TATTTT
65053612 AAAAAATTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 5 0.18
14 17 0.61
15 6 0.21
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.77
Consensus pattern (14 bp):
TATTTTTTGTTATT
Found at i:65053684 original size:15 final size:15
Alignment explanation
Indices: 65053664--65053693 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
65053654 TTTTTTAAAA
65053664 TTTTAAATATTATTT
1 TTTTAAATATTATTT
65053679 TTTTAAATATTATTT
1 TTTTAAATATTATTT
65053694 AATTTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTAAATATTATTT
Found at i:65053727 original size:14 final size:15
Alignment explanation
Indices: 65053702--65053734 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
65053692 TTAATTTGTT
65053702 TTATAATATTTTAAA
1 TTATAATATTTTAAA
65053717 TTATAAT-TTTTAAA
1 TTATAATATTTTAAA
65053731 TTAT
1 TTAT
65053735 TTGTAAAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTATAATATTTTAAA
Found at i:65054000 original size:20 final size:19
Alignment explanation
Indices: 65053958--65054000 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
65053948 TATTTAAAAG
*
65053958 TTAAAAAATAATATTTTAT
1 TTAAAAAATAATATTTTAA
65053977 TTAAAAAAGTAA-ATTTTGAA
1 TTAAAAAA-TAATATTTT-AA
65053997 TTAA
1 TTAA
65054001 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (19 bp):
TTAAAAAATAATATTTTAA
Found at i:65054107 original size:20 final size:19
Alignment explanation
Indices: 65054058--65054107 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 19
65054048 TTATTTTAAT
65054058 ATATATATTAAAAAGTAAAA
1 ATATATATT-AAAAGTAAAA
* *
65054078 ATTTAAATTAAAAGTTAAAA
1 ATATATATTAAAAG-TAAAA
65054098 ATATATATTA
1 ATATATATTA
65054108 TAAAATCACA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (19 bp):
ATATATATTAAAAGTAAAA
Found at i:65054568 original size:40 final size:40
Alignment explanation
Indices: 65054538--65054614 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
65054528 AGTGTTGGTT
*
65054538 ATAATTTTTTTATTATAGTACACATTTATAAATTTATATA
1 ATAATTTTTTAATTATAGTACACATTTATAAATTTATATA
* *
65054578 ATAATTTTTTAATTTTAGTACACATTCATAAATTTAT
1 ATAATTTTTTAATTATAGTACACATTTATAAATTTAT
65054615 GTACTTAATA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.39, C:0.06, G:0.03, T:0.52
Consensus pattern (40 bp):
ATAATTTTTTAATTATAGTACACATTTATAAATTTATATA
Found at i:65054661 original size:32 final size:32
Alignment explanation
Indices: 65054625--65054690 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
65054615 GTACTTAATA
65054625 TATATTTTTAATAGATAAAGACAAAAAAGATT
1 TATATTTTTAATAGATAAAGACAAAAAAGATT
65054657 TATATTTTTAATAGATAAAGACAAAAAAGATT
1 TATATTTTTAATAGATAAAGACAAAAAAGATT
65054689 TA
1 TA
65054691 CTTAATAGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.53, C:0.03, G:0.09, T:0.35
Consensus pattern (32 bp):
TATATTTTTAATAGATAAAGACAAAAAAGATT
Found at i:65054911 original size:16 final size:17
Alignment explanation
Indices: 65054889--65054926 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
65054879 AAAAACGTAA
*
65054889 AAAAATTTAAATATATT
1 AAAATTTTAAATATATT
65054906 AAAATTTTAAATATATT
1 AAAATTTTAAATATATT
65054923 AAAA
1 AAAA
65054927 GAAAATGTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAATTTTAAATATATT
Found at i:65054994 original size:17 final size:17
Alignment explanation
Indices: 65054981--65055019 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
65054971 ATATTTAGAT
65054981 ATATTAAAATTTTAAAC
1 ATATTAAAATTTTAAAC
65054998 ATATTAAAATTTATAAGAC
1 ATATTAAAATTT-TAA-AC
65055017 ATA
1 ATA
65055020 ATTTCAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 12 0.60
18 3 0.15
19 5 0.25
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (17 bp):
ATATTAAAATTTTAAAC
Found at i:65055070 original size:32 final size:35
Alignment explanation
Indices: 65055029--65055100 Score: 105
Period size: 33 Copynumber: 2.1 Consensus size: 35
65055019 AATTTCAAAA
*
65055029 AAAAATAATA-TTCAAATTTTAAAAAATA-ATT-T
1 AAAAATAATATTTAAAATTTTAAAAAATATATTAT
*
65055061 AAAAATAATATTTAAAATTTTAAAATATATATTAT
1 AAAAATAATATTTAAAATTTTAAAAAATATATTAT
65055096 AAAAA
1 AAAAA
65055101 AATTCAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
32 10 0.29
33 16 0.46
34 3 0.09
35 6 0.17
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (35 bp):
AAAAATAATATTTAAAATTTTAAAAAATATATTAT
Found at i:65055085 original size:20 final size:22
Alignment explanation
Indices: 65055056--65055099 Score: 65
Period size: 20 Copynumber: 2.1 Consensus size: 22
65055046 TTTAAAAAAT
65055056 AATTTAAAAATA-ATATT-TAA
1 AATTTAAAAATATATATTATAA
*
65055076 AATTTTAAAATATATATTATAA
1 AATTTAAAAATATATATTATAA
65055098 AA
1 AA
65055100 AAATTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 11 0.52
21 5 0.24
22 5 0.24
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AATTTAAAAATATATATTATAA
Found at i:65055100 original size:23 final size:22
Alignment explanation
Indices: 65055056--65055132 Score: 59
Period size: 23 Copynumber: 3.5 Consensus size: 22
65055046 TTTAAAAAAT
*
65055056 AATTTAAAAATA-ATATTT-AA
1 AATTTTAAAATATATATTTAAA
65055076 AATTTTAAAATATATATTATAAA
1 AATTTTAAAATATATATT-TAAA
** * *
65055099 AAAATTCAAATATACATTTTAAA
1 AATTTTAAAATATATA-TTTAAA
**
65055122 TTTTTTAAAAT
1 AATTTTAAAAT
65055133 TAATAACAAA
Statistics
Matches: 43, Mismatches: 10, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
20 11 0.26
21 5 0.12
22 1 0.02
23 24 0.56
24 2 0.05
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTTTAAAATATATATTTAAA
Found at i:65055168 original size:19 final size:18
Alignment explanation
Indices: 65055141--65055181 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
65055131 ATTAATAACA
65055141 AAAATAAATAAACAAA-AT
1 AAAATAAATAAA-AAATAT
65055159 AAAATAAAATAAAAAATAT
1 AAAAT-AAATAAAAAATAT
65055178 AAAA
1 AAAA
65055182 CTTTAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (18 bp):
AAAATAAATAAAAAATAT
Found at i:65065413 original size:23 final size:24
Alignment explanation
Indices: 65065387--65065442 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 24
65065377 AAAAAAATAA
65065387 TGAAAAAAATTAAACATT-G-AAAT
1 TGAAAAAAA-TAAACATTAGAAAAT
* *
65065410 TGAAAAAGATAAACTTTAGAAAAT
1 TGAAAAAAATAAACATTAGAAAAT
*
65065434 TTAAAAAAA
1 TGAAAAAAA
65065443 ACCCAAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 7 0.26
23 9 0.33
24 11 0.41
ACGTcount: A:0.62, C:0.04, G:0.09, T:0.25
Consensus pattern (24 bp):
TGAAAAAAATAAACATTAGAAAAT
Found at i:65070594 original size:58 final size:60
Alignment explanation
Indices: 65070500--65070621 Score: 142
Period size: 58 Copynumber: 2.1 Consensus size: 60
65070490 TCATTCTTTT
* * *
65070500 TTTTTTCATTTTCATTTAGGAGAAAACCACATTCATTACTATATGATTC-CATTTATCCA
1 TTTTTTCATTTTCATTTAGGAGAAAACCACAATCATTACCAAATGATTCACATTTATCCA
* * * * *
65070559 TTTTTT-ATTTTCAATTT-GGAGAAAACTATAATCATTTCCAAATGTTTCACATTTCTCCA
1 TTTTTTCATTTTC-ATTTAGGAGAAAACCACAATCATTACCAAATGATTCACATTTATCCA
65070618 TTTT
1 TTTT
65070622 CACCATTTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
58 30 0.57
59 23 0.43
ACGTcount: A:0.30, C:0.17, G:0.07, T:0.47
Consensus pattern (60 bp):
TTTTTTCATTTTCATTTAGGAGAAAACCACAATCATTACCAAATGATTCACATTTATCCA
Found at i:65074736 original size:19 final size:18
Alignment explanation
Indices: 65074689--65074780 Score: 71
Period size: 19 Copynumber: 4.9 Consensus size: 18
65074679 TAAAAAAACG
65074689 TAAAAAATCATT-AAAATT
1 TAAAAAAT-ATTAAAAATT
65074707 TAAAAAA-ATTAAAAATT
1 TAAAAAATATTAAAAATT
*
65074724 TAAAAAATTATTAGAAATT
1 TAAAAAA-TATTAAAAATT
* * *
65074743 AATTAAAAATAATAAAATTT
1 --TAAAAAATATTAAAAATT
* *
65074763 TATAAAATTTATAAAAAT
1 TAAAAAATAT-TAAAAAT
65074781 ACTTTATTAT
Statistics
Matches: 58, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
16 3 0.05
17 13 0.22
18 13 0.22
19 15 0.26
20 8 0.14
21 6 0.10
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.35
Consensus pattern (18 bp):
TAAAAAATATTAAAAATT
Found at i:65074773 original size:9 final size:9
Alignment explanation
Indices: 65074700--65074778 Score: 54
Period size: 9 Copynumber: 8.6 Consensus size: 9
65074690 AAAAAATCAT
65074700 TAAAATTTA
1 TAAAATTTA
* *
65074709 AAAAAATTA
1 TAAAATTTA
65074718 -AAAATTTA
1 TAAAATTTA
*
65074726 -AAAAATTA
1 TAAAATTTA
*
65074734 TTAGAAATTAA
1 -TA-AAATTTA
* *
65074745 TTAAAAATAA
1 -TAAAATTTA
65074755 TAAAATTTTA
1 TAAAA-TTTA
65074765 TAAAATTTA
1 TAAAATTTA
65074774 TAAAA
1 TAAAA
65074779 ATACTTTATT
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
8 14 0.25
9 21 0.37
10 14 0.25
11 8 0.14
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.35
Consensus pattern (9 bp):
TAAAATTTA
Found at i:65076153 original size:24 final size:26
Alignment explanation
Indices: 65076113--65076164 Score: 81
Period size: 24 Copynumber: 2.1 Consensus size: 26
65076103 AGAATTTTTA
65076113 ATAAAATTTATATATTTTTTAAAAAT
1 ATAAAATTTATATATTTTTTAAAAAT
*
65076139 ATAAAATTTA-A-ATTTTTTATAAAT
1 ATAAAATTTATATATTTTTTAAAAAT
65076163 AT
1 AT
65076165 TTTGAATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 14 0.56
25 1 0.04
26 10 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
ATAAAATTTATATATTTTTTAAAAAT
Found at i:65076174 original size:19 final size:19
Alignment explanation
Indices: 65076152--65076214 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
65076142 AAATTTAAAT
65076152 TTTTTATAAA-TATTTTGAA
1 TTTTTA-AAATTATTTTGAA
*
65076171 TTTTAAAAATTATTTTGAAA
1 TTTTTAAAATTATTTTG-AA
* *
65076191 ATTTGAAAATTATTTTGAA
1 TTTTTAAAATTATTTTGAA
65076210 TTTTT
1 TTTTT
65076215 TTATAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
18 3 0.08
19 17 0.46
20 17 0.46
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTTAAAATTATTTTGAA
Found at i:65076174 original size:20 final size:20
Alignment explanation
Indices: 65076088--65076220 Score: 71
Period size: 20 Copynumber: 6.5 Consensus size: 20
65076078 AAATCTTAAC
65076088 TTTTTATAAAT-TTTTAGAAT
1 TTTTTATAAATATTTT-GAAT
*
65076108 TTTTAATAAA-ATTTAT-ATAT
1 TTTTTATAAATATTT-TGA-AT
* *
65076128 TTTTTAAAAATATAAAATTTAAAT
1 TTTTTATAAATAT----TTTGAAT
65076152 TTTTTATAAATATTTTGAA-
1 TTTTTATAAATATTTTGAAT
* *
65076171 -TTTTAAAAATTATTTTGAAA
1 TTTTTATAAA-TATTTTGAAT
* *
65076191 ATTTGA-AAATTATTTTGAATT
1 TTTTTATAAA-TATTTTGAA-T
65076212 TTTTTATAA
1 TTTTTATAA
65076221 TTTTTGTGGA
Statistics
Matches: 89, Mismatches: 10, Indels: 26
0.71 0.08 0.21
Matches are distributed among these distances:
18 8 0.09
19 10 0.11
20 40 0.45
21 11 0.12
22 2 0.02
24 15 0.17
25 3 0.03
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
TTTTTATAAATATTTTGAAT
Found at i:65080801 original size:207 final size:206
Alignment explanation
Indices: 65080291--65081310 Score: 1279
Period size: 207 Copynumber: 5.0 Consensus size: 206
65080281 TATAGCTTGC
* * * * * *
65080291 GACAAATCTTCAATCATATGCCTCATCTTTGACAACTCTTTTTCTTGGCTTTGA-TTT-TC-TCT
1 GACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCTTCT
* * * ** *
65080353 TGACCTTTTATATGTCCATTCATGGCTTAAAAGTGA-TTTCTAATATAAGTTATAGGATCTAATT
66 TGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTC-AATATAAGTCCTAAGATCTAATT
* * * *
65080417 A-AGCTCTGATACCAAAATTGATGTCGTAAATTATTAGGTTGATTGAAAAACCTAAATAGCTAAA
130 AGA-CTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCT-AA
65080481 AAAAATTAAAATGT
193 AAAAATTAAAATGT
* * *
65080495 --CAATTCTTCTATCATA-GTCTCATCTCTGACAATTCTATTTGTTGGCTTTGATTTGCTCTTCA
1 GACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCTTC-
* * * * *
65080557 TTAATCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATACAAGTCATAAAATCTAATT
65 TTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTAATT
* *
65080622 AGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGCTGAGTGGAAATTCTAAATAGCTAAAA
130 AGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTAAAA
*
65080687 ATATTAAAATGT
195 AAATTAAAATGT
* * *
65080699 GACAATTCTTCTATCATATGCCTCATCTCTGACAACTCTATTTCTTAGCTTTGATTTTCTCTTAC
1 GACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCTT-C
*
65080764 TTTACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTAATT
65 TTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTAATT
* *
65080829 ATG-CTCTGATACCAAAAATGATGTGGTAAATTATTAAGTTGAGTGGAAAATCTAAATAGCTAAA
130 A-GACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTAAA
*
65080893 AAAATTAAAATGG
194 AAAATTAAAATGT
* * * * *
65080906 GACAATTCTTCTATCATGCGCCTCATCTCTAACCACTTTATTTGTTGGTTTTGATTTTCTCTTCC
1 GACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCTT-C
* * * * *
65080971 TTGACCTCTTGTATGTTCAGTCATGGCTTAAAAGCGATTTCCAATATAAGTCCTAGGATCTAATT
65 TTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTAATT
* * * * *
65081036 AGGCTTTGATATCAAAATTGATGTGGTTAATTATTAGGTTGAGTGAAAAATCTAAATAG--AAAA
130 AGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTAAAA
*
65081099 AAATTTTAAAATGC
195 AAA--TTAAAATGT
* * * * *
65081113 GACAATTCTTCTATCATGCCCCTCATCTTTTACAACTCTATTTGTTGGCTTTGATTTTCTTTTCC
1 GACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCTT-C
* * * * *
65081178 TTGACCTCTTGTATTTCCAATCATAGCTTAAAAGTGATTTCCAATATAAGTCCTAAGATTTGATT
65 TTGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTAATT
* * * * * *
65081243 AGGCTTTGATACAAAAAATGATGTGGTAAATTATTAGGTTGAGTGGAAAGTCTAAATTGCTAAAA
130 AGACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTAAAA
65081308 AAA
195 AAA
65081311 ATAGGAGATA
Statistics
Matches: 716, Mismatches: 84, Indels: 27
0.87 0.10 0.03
Matches are distributed among these distances:
201 30 0.04
202 16 0.02
203 2 0.00
204 17 0.02
205 111 0.16
206 22 0.03
207 509 0.71
208 2 0.00
209 7 0.01
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (206 bp):
GACAATTCTTCTATCATACGCCTCATCTCTGACAACTCTATTTGTTGGCTTTGATTTTCTCTTCT
TGACCTCTTGTATGTCCAATCATGGCTTAAAAGTGATTTTCAATATAAGTCCTAAGATCTAATTA
GACTCTGATACCAAAATTGATGTGGTAAATTATTAGGTTGAGTGGAAAATCTAAATAGCTAAAAA
AATTAAAATGT
Found at i:65089793 original size:37 final size:39
Alignment explanation
Indices: 65089751--65089826 Score: 111
Period size: 37 Copynumber: 2.0 Consensus size: 39
65089741 AAGGCAAAAT
* * *
65089751 TGACATTATATATTTT-TAA-TTATATTTTAAAATTTAA
1 TGACATTATATATTTTCAAAGTAATATATTAAAATTTAA
65089788 TGACATTATATATTTTCAAAGTAATATATTAAAATTTAA
1 TGACATTATATATTTTCAAAGTAATATATTAAAATTTAA
65089827 CAAATTTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 16 0.47
38 2 0.06
39 16 0.47
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.49
Consensus pattern (39 bp):
TGACATTATATATTTTCAAAGTAATATATTAAAATTTAA
Found at i:65091942 original size:23 final size:23
Alignment explanation
Indices: 65091907--65091959 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
65091897 AAAATTATAC
* *
65091907 CATCTTGGGTCTTACCATTTTCT
1 CATCTTTGGTCTTACCATTTGCT
* *
65091930 CATCTTTGTTCTTACTATTTGCT
1 CATCTTTGGTCTTACCATTTGCT
*
65091953 TATCTTT
1 CATCTTT
65091960 ATTATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.09, T:0.55
Consensus pattern (23 bp):
CATCTTTGGTCTTACCATTTGCT
Found at i:65098875 original size:129 final size:132
Alignment explanation
Indices: 65098566--65098984 Score: 329
Period size: 131 Copynumber: 3.2 Consensus size: 132
65098556 GGCAATCGTG
* * * * ** * * * *
65098566 GAATCGTGCCCTAAT-GTGCTGGGTTGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTCC
1 GAATCGTGCCCT-ATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTC
* * * * * * * * * * * * * *
65098630 AAAATTTCACGCATGTCTTCTAAAAATCATTTAAAATGAAGGCAA-TATTCGGTGATTGACAATT
65 GAAGTTTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAAG-AAGTGTTCGATGTTTGGCAGTT
65098694 CGG-
129 CGGA
* * * * * * * *
65098697 GAATCATGCCCTATCGTGCTGGGTTGTGACTTCTCGTTTGCTCAAAACAATCGAATATTCCTT-T
1 GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCG
* * *
65098761 AGGTTTTCACTCATGTTTAT-TAAAAA-CCTTTCAAAAC-AAAGGA-TGTTCGATGTTTGGC-GA
66 AAG-TTTCACTCACGTTT-TCTAAAAACCCTTT-AAAACGAAAGAAGTGTTCGATGTTTGGCAG-
*
65098821 TT-TGA
127 TTCGGA
* *
65098826 GAATCGTGCCCTATCGTGCTGGGTTGCG-CTTTTTCATTCGCCCTAAACAATCGAAGATCCCTTC
1 GAATCGTGCCCTATCGTGCTGGGTTGCGAC-TTCTCATTCGCCCAAAACAATCGAAGATCCCTTC
*
65098890 GAAGTTTCATTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAGTTC
65 GAAGTTTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAGTTC
*
65098955 GGG
130 GGA
*
65098958 GAATAGTGCCCTATCGTGCTGGGTTGC
1 GAATCGTGCCCTATCGTGCTGGGTTGC
65098985 AATCTCCTGT
Statistics
Matches: 233, Mismatches: 41, Indels: 27
0.77 0.14 0.09
Matches are distributed among these distances:
128 3 0.01
129 89 0.38
130 22 0.09
131 90 0.39
132 29 0.12
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.33
Consensus pattern (132 bp):
GAATCGTGCCCTATCGTGCTGGGTTGCGACTTCTCATTCGCCCAAAACAATCGAAGATCCCTTCG
AAGTTTCACTCACGTTTTCTAAAAACCCTTTAAAACGAAAGAAGTGTTCGATGTTTGGCAGTTCG
GA
Found at i:65100941 original size:26 final size:26
Alignment explanation
Indices: 65100894--65100967 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 26
65100884 TTTCTCACCC
**
65100894 CAATTTTACCGTA-GTAAAATTTTGA
1 CAATTTTACCCCAGGTAAAATTTTGA
*
65100919 TAATTTTACCCCAGGTAAAATTTTGA
1 CAATTTTACCCCAGGTAAAATTTTGA
* * *
65100945 CGATTTTACCCCTGATAAAATTT
1 CAATTTTACCCCAGGTAAAATTT
65100968 CGAGAAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 10 0.24
26 31 0.76
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (26 bp):
CAATTTTACCCCAGGTAAAATTTTGA
Found at i:65101128 original size:12 final size:12
Alignment explanation
Indices: 65101111--65101144 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
65101101 GGATTGTAAG
65101111 TTTCCATTTTCA
1 TTTCCATTTTCA
*
65101123 TTTCCATTTCCA
1 TTTCCATTTTCA
*
65101135 TTTTCATTTT
1 TTTCCATTTT
65101145 TGGAAACCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.15, C:0.24, G:0.00, T:0.62
Consensus pattern (12 bp):
TTTCCATTTTCA
Found at i:65103323 original size:21 final size:20
Alignment explanation
Indices: 65103289--65103335 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
65103279 CTAAAATGTG
*
65103289 AATTTAATTGAATTGAATATA
1 AATTTAATTAAATTGAAT-TA
* *
65103310 AATTTTATTAAATTGAGTTA
1 AATTTAATTAAATTGAATTA
65103330 AATTTA
1 AATTTA
65103336 CCCGTATAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.47
Consensus pattern (20 bp):
AATTTAATTAAATTGAATTA
Found at i:65103852 original size:25 final size:24
Alignment explanation
Indices: 65103798--65103892 Score: 86
Period size: 25 Copynumber: 3.9 Consensus size: 24
65103788 GGCTCTTTGT
* *
65103798 GAGCATCCCGATTAATGGCTCTCC
1 GAGCTTCCCGATTAATGGCTCTCA
*
65103822 GAAGCTTCCTGATTAATGGCTCTTCA
1 G-AGCTTCCCGATTAATGGCTC-TCA
* * *
65103848 GAGCTACCCG-TTATTGGCTCACA
1 GAGCTTCCCGATTAATGGCTCTCA
*
65103871 TGAGCTTCTCGATT-ATGGCTCT
1 -GAGCTTCCCGATTAATGGCTCT
65103893 TATGAGTTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
23 2 0.04
24 24 0.43
25 27 0.48
26 3 0.05
ACGTcount: A:0.20, C:0.27, G:0.21, T:0.32
Consensus pattern (24 bp):
GAGCTTCCCGATTAATGGCTCTCA
Done.