Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 207 of 259
Found at i:65739096 original size:146 final size:145
Alignment explanation
Indices: 65738564--65739099 Score: 554
Period size: 146 Copynumber: 3.6 Consensus size: 145
65738554 TAGTCAATGC
* * * *
65738564 CAACCTTTAAAAAGGGTTGGGATAGACCTAGT-TAAGGCCAACCTTT-GAAAAAGTTTGCGATAG
1 CAACC-TTAAAAA-GGTTGAGATAGA-CTTGTCTAAGG-CAACCTTTAAAAAAAG-TTGGGATAG
* * * * ** * * * *
65738627 ACCTGTTTAAGGCAGCCTTAAAAGGGTTGGTATAGTTCTTGTTTAACGCAACTTTTAAAAACGAT
61 ACCTGTCTAAGGCAACCTTAAAAAGGTTGGGATAAATCTTGTCTAAGGCAACTTTTAAAAAAGGT
* *
65738692 TGGGATAGAGCCGTCTAAGG
126 TGGGATAGACCCGTTTAAGG
* *
65738712 CAACCTTAAAAAGGTTGAGATAGACCTTGTCTAAGACAACCTATAAAAAAAGGTTGGGATAGACC
1 CAACCTTAAAAAGGTTGAGATAGA-CTTGTCTAAGGCAACCTTTAAAAAAA-GTTGGGATAGACC
* * * * * * * * * *
65738777 TATCTAAGGCAACCTTAAACAGGCTAGGATAGACCATGTCTAAGGCAACCTTAAAAAAAAGTTGG
64 TGTCTAAGGCAACCTTAAAAAGGTTGGGATAAATCTTGTCTAAGGCAACTTTTAAAAAAGGTTGG
* *
65738842 AATAGACCCGTTCAAGG
129 GATAGACCCGTTTAAGG
* *
65738859 CAACCTTAAAAAGGTTGGGATAGACTATGTCTAAGGCAACTTTTAAAAAAAGTTGGGATAGACCT
1 CAACCTTAAAAAGGTTGAGATAGACT-TGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCT
* *
65738924 GTCTAAGGCAGCCTTAAAATGGTTGGGATAAATCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGG
65 GTCTAAGGCAACCTTAAAAAGGTTGGGATAAATCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGG
*
65738989 ATAGACCCGTTTAAAG
130 ATAGACCCGTTTAAGG
* * * * * * *
65739005 CAACTTTAGAAAGGTTGAGATAAATCTTGTCTAAGGTAACCTTTAAAAAAAGTTAGGATAAACCC
1 CAACCTTAAAAAGGTTGAGATAGA-CTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCT
* ** * *
65739070 GTTTAAGATAACCTGAAAAAGATTGGGATA
65 GTCTAAGGCAACCTTAAAAAGGTTGGGATA
65739100 GACACGTATA
Statistics
Matches: 320, Mismatches: 63, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
146 181 0.57
147 133 0.42
148 6 0.02
ACGTcount: A:0.37, C:0.15, G:0.22, T:0.26
Consensus pattern (145 bp):
CAACCTTAAAAAGGTTGAGATAGACTTGTCTAAGGCAACCTTTAAAAAAAGTTGGGATAGACCTG
TCTAAGGCAACCTTAAAAAGGTTGGGATAAATCTTGTCTAAGGCAACTTTTAAAAAAGGTTGGGA
TAGACCCGTTTAAGG
Found at i:65749163 original size:37 final size:37
Alignment explanation
Indices: 65749108--65749202 Score: 131
Period size: 37 Copynumber: 2.6 Consensus size: 37
65749098 TTTATATTAA
*
65749108 AAAACCCTAAAATTCTAAACCCCAAACCCATA-ATCAC
1 AAAACCCTAAAATCCTAAACCCCAAACCCATATA-CAC
* *
65749145 AAAATCCTAAAATCCTAAACCCTAAACCCATATACAC
1 AAAACCCTAAAATCCTAAACCCCAAACCCATATACAC
65749182 AAAACCCTAAAA-CCTTAAACC
1 AAAACCCTAAAATCC-TAAACC
65749203 ATAATGTGAC
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
36 2 0.04
37 49 0.94
38 1 0.02
ACGTcount: A:0.49, C:0.34, G:0.00, T:0.17
Consensus pattern (37 bp):
AAAACCCTAAAATCCTAAACCCCAAACCCATATACAC
Found at i:65751293 original size:49 final size:47
Alignment explanation
Indices: 65751202--65751426 Score: 317
Period size: 47 Copynumber: 4.7 Consensus size: 47
65751192 TTAGGATTCT
* * *
65751202 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
65751249 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
65751298 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
65751345 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
65751392 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
65751427 TCCCGAAGGG
Statistics
Matches: 162, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.01
47 116 0.72
49 45 0.28
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:65751302 original size:96 final size:94
Alignment explanation
Indices: 65751202--65751426 Score: 308
Period size: 96 Copynumber: 2.4 Consensus size: 94
65751192 TTAGGATTCT
65751202 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGGATGTGAA-AGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
* * *
65751266 GTGTATATATATGTGATAAGGCCTAATGGCCG
65 GTG--TATATATGTGACAAGGCCGAATGGCCA
* * *
65751298 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGGATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
65751363 TGTATATATGTGACAGGGCCGAGTGGCCA
66 TGTATATATGTGACAAGGCCGAATGGCCA
* * * *
65751392 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGGATGTGAAAGTGCATATATGAGATAAG
65751427 TCCCGAAGGG
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
94 54 0.46
95 1 0.01
96 62 0.53
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
ATGTGATGGATGTGAAAGTGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGACAAGGCCGAATGGCCA
Found at i:65751601 original size:37 final size:37
Alignment explanation
Indices: 65751545--65751623 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
65751535 CCGAGCTCTA
* * *
65751545 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
65751582 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
65751619 AAGAC
1 AAGAC
65751624 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:65753451 original size:30 final size:30
Alignment explanation
Indices: 65753415--65753475 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
65753405 AGGCATACAT
65753415 ATCCCAACCCTTATACAAAGAGTTGGCCAA
1 ATCCCAACCCTTATACAAAGAGTTGGCCAA
65753445 ATCCCAACCCTTATACAAAGAGTTGGCCAA
1 ATCCCAACCCTTATACAAAGAGTTGGCCAA
65753475 A
1 A
65753476 GCATAGTCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.30, G:0.13, T:0.20
Consensus pattern (30 bp):
ATCCCAACCCTTATACAAAGAGTTGGCCAA
Found at i:65753604 original size:132 final size:134
Alignment explanation
Indices: 65753445--65754021 Score: 734
Period size: 141 Copynumber: 4.2 Consensus size: 134
65753435 AGTTGGCCAA
*
65753445 ATCCCAACCCTTATACAAAGAGTTGGCCAAAGCA-T-AGTCTATCCCAACACTTAGGAAAGTGTT
1 ATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATTCACTCTATCCCAACACTTAGGAAAGTGTT
*
65753508 GCCACAAAAGTGTCATCTTAGGACTACAGAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCAT
66 GCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCAT
65753573 ACAT
131 ACAT
* * * *
65753577 ACCCCAACCCTTATACAAAGAGTTGGCCAAAGC-GT-AGTCTATCCCAACACTTAGGAAAGTGTC
1 ATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATTCACTCTATCCCAACACTTAGGAAAGTGTT
* * *
65753640 GCCACGAAAGTGTCATCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCATCGCCTTAGGCAT
66 GCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCAT
65753705 ACAT
131 ACAT
* * * *
65753709 ATCCCAACCCTTATATAAAGAGTTGCCCAAAGTGTATGTTCGCAACTCTATCCCAACACTTAAGA
1 ATCCCAACCCTTATACAAAGAGTTGGCCAAA--GCA--TT--C-ACTCTATCCCAACACTTAGGA
* * * *
65753774 AAGT-TTCGTCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAACTCTTATTCAAGTGTTGCC
59 AAGTGTT-GCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCC
65753838 TTAGGCATACAT
123 TTAGGCATACAT
*
65753850 ATCCCAACCCTTATACAAAGAGTTGCCCAAAGCGTATGTTCGCAACTCTATCCCAACACTTAGGA
1 ATCCCAACCCTTATACAAAGAGTTGGCCAAAGC--A--TT--C-ACTCTATCCCAACACTTAGGA
* * * * * *
65753915 AAGCGTTGCCCCAAAAGTGTCGTCTTAGGACTAGAC-AAAGCCAACTCTTATTTAAGTGTTGCCT
59 AAGTGTTGCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCT
*
65753979 TAGGCATGCAT
124 TAGGCATACAT
* *
65753990 ATTCCAACCCTTAAACAAAGAGTTGGCCAAAG
1 ATCCCAACCCTTATACAAAGAGTTGGCCAAAG
65754022 AATATGTTGG
Statistics
Matches: 398, Mismatches: 33, Indels: 20
0.88 0.07 0.04
Matches are distributed among these distances:
132 153 0.38
134 1 0.00
137 1 0.00
139 1 0.00
140 67 0.17
141 173 0.43
142 2 0.01
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (134 bp):
ATCCCAACCCTTATACAAAGAGTTGGCCAAAGCATTCACTCTATCCCAACACTTAGGAAAGTGTT
GCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCAT
ACAT
Found at i:65753840 original size:273 final size:274
Alignment explanation
Indices: 65753482--65754060 Score: 804
Period size: 273 Copynumber: 2.1 Consensus size: 274
65753472 CAAAGCATAG
*
65753482 TCTATCCCAACACTTAGGAAAGTGTTGCCACAAAAGTGTCATCTTAGGACTACAGAAAAGCCAAC
1 TCTATCCCAACACTTAGGAAAGTGTTGCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAAC
*
65753547 TCTTATTCAAGCGTTGCCTTAGGCATACATACCCCAACCCTTATACAAAGAGTTGGCCAAAGCGT
66 TCTTATTCAAGCGTTGCCTTAGGCATACATACCCCAACCCTTATACAAAGAGTTGCCCAAAGCGT
* *
65753612 A-G-TCTATCCCAACACTTAGGAAAGTGTCGCCACGAAAGTGTCATCTTAGGACTACACAAAAGC
131 ATGATCTATCCCAACACTTAGGAAAGCGTCGCCACAAAAGTGTCATCTTAGGACTACAC-AAAGC
* *
65753675 CAACTCTTATTCAAGCATCGCCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGCCCAAA
195 CAACTCTTATTCAAGCATCGCCTTAGGCATACATATCCCAACCCTTAAACAAAGAGTTGCCCAAA
**
65753740 GTGTATGTTCGCAAC
260 GAATATGTTCGCAAC
* * * *
65753755 TCTATCCCAACACTTAAGAAAGT-TTCGTCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAA
1 TCTATCCCAACACTTAGGAAAGTGTT-GCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAA
* *
65753819 CTCTTATTCAAGTGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGCG
65 CTCTTATTCAAGCGTTGCCTTAGGCATACATACCCCAACCCTTATACAAAGAGTTGCCCAAAGCG
* * * *
65753884 TATGTTCGCAACTCTATCCCAACACTTAGGAAAGCGTTGCCCCAAAAGTGTCGTCTTAGGACTAG
130 TA---T-G--A-TCTATCCCAACACTTAGGAAAGCGTCGCCACAAAAGTGTCATCTTAGGACTAC
* ** * * *
65753949 ACAAAGCCAACTCTTATTTAAGTGTTGCCTTAGGCATGCATATTCCAACCCTTAAACAAAGAGTT
188 ACAAAGCCAACTCTTATTCAAGCATCGCCTTAGGCATACATATCCCAACCCTTAAACAAAGAGTT
* * * *
65754014 GGCCAAAGAATATGTTGGCCAG
253 GCCCAAAGAATATGTTCGCAAC
65754036 TCTATCCCAACACTTAGGAAAGTGT
1 TCTATCCCAACACTTAGGAAAGTGT
65754061 CACCCATAAA
Statistics
Matches: 266, Mismatches: 29, Indels: 13
0.86 0.09 0.04
Matches are distributed among these distances:
272 2 0.01
273 120 0.45
278 1 0.00
281 93 0.35
282 50 0.19
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.25
Consensus pattern (274 bp):
TCTATCCCAACACTTAGGAAAGTGTTGCCACAAAAGTGTCATCTTAGGACTACACAAAAGCCAAC
TCTTATTCAAGCGTTGCCTTAGGCATACATACCCCAACCCTTATACAAAGAGTTGCCCAAAGCGT
ATGATCTATCCCAACACTTAGGAAAGCGTCGCCACAAAAGTGTCATCTTAGGACTACACAAAGCC
AACTCTTATTCAAGCATCGCCTTAGGCATACATATCCCAACCCTTAAACAAAGAGTTGCCCAAAG
AATATGTTCGCAAC
Found at i:65754028 original size:140 final size:141
Alignment explanation
Indices: 65753614--65754081 Score: 656
Period size: 141 Copynumber: 3.3 Consensus size: 141
65753604 CAAAGCGTAG
* * *
65753614 TCTATCCCAACACTTAGGAAAGTGTCGCCACGAAAGTGTCATCTTAGGACTACACAAAAGCCAAC
1 TCTATCCCAACACTTAGGAAAGTGTTGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
** * * *
65753679 TCTTATTCAAGCATCGCCTTAGGCATACATATCCCAACCCTTATATAAAGAGTTGCCCAAAGTGT
66 TCTTATTCAAGTGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAGT
65753744 ATGTTCGCAAC
131 ATGTTCGCAAC
* * *
65753755 TCTATCCCAACACTTAAGAAAGT-TTCGTCACAAAAGTGTCGTCTTAGGACTATACAAAAGCCAA
1 TCTATCCCAACACTTAGGAAAGTGTT-GCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAA
*
65753819 CTCTTATTCAAGTGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGCG
65 CTCTTATTCAAGTGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAG
65753884 TATGTTCGCAAC
130 TATGTTCGCAAC
* * *
65753896 TCTATCCCAACACTTAGGAAAGCGTTGCCCCAAAAGTGTCGTCTTAGGACTAGAC-AAAGCCAAC
1 TCTATCCCAACACTTAGGAAAGTGTTGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
* * * * * *
65753960 TCTTATTTAAGTGTTGCCTTAGGCATGCATATTCCAACCCTTAAACAAAGAGTTGGCCAAAGAAT
66 TCTTATTCAAGTGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAGT
* * *
65754025 ATGTTGGCCAG
131 ATGTTCGCAAC
**
65754036 TCTATCCCAACACTTAGGAAAGTGTCACC-CATAAA-TGTCGTCTTAG
1 TCTATCCCAACACTTAGGAAAGTGTTGCCACA-AAAGTGTCGTCTTAG
65754082 CACTGTTTTG
Statistics
Matches: 295, Mismatches: 29, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
139 13 0.04
140 105 0.36
141 175 0.59
142 2 0.01
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.26
Consensus pattern (141 bp):
TCTATCCCAACACTTAGGAAAGTGTTGCCACAAAAGTGTCGTCTTAGGACTACACAAAAGCCAAC
TCTTATTCAAGTGTTGCCTTAGGCATACATATCCCAACCCTTATACAAAGAGTTGCCCAAAGAGT
ATGTTCGCAAC
Found at i:65758112 original size:14 final size:15
Alignment explanation
Indices: 65758093--65758148 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
65758083 AATCTTTAAT
65758093 GATATG-CAATCTTA
1 GATATGACAATCTTA
65758107 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
65758124 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
65758142 GATATGA
1 GATATGA
65758149 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:65758115 original size:19 final size:19
Alignment explanation
Indices: 65758091--65758162 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
65758081 ATAATCTTTA
65758091 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65758110 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65758127 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
65758145 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
65758163 AGATATATTT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:65758137 original size:35 final size:37
Alignment explanation
Indices: 65758091--65758162 Score: 121
Period size: 35 Copynumber: 2.0 Consensus size: 37
65758081 ATAATCTTTA
65758091 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
65758127 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGA
65758163 AGATATATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
35 19 0.56
36 5 0.15
37 10 0.29
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:65758195 original size:21 final size:22
Alignment explanation
Indices: 65758154--65758197 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
65758144 TATGATATGC
*
65758154 AATCTTAGAAGATATATTTTGT
1 AATCTTAGAAGATATAATTTGT
*
65758176 AATCTTAG-AGATTTAATTTGT
1 AATCTTAGAAGATATAATTTGT
65758197 A
1 A
65758198 GATACCTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (22 bp):
AATCTTAGAAGATATAATTTGT
Found at i:65760342 original size:43 final size:41
Alignment explanation
Indices: 65760294--65760406 Score: 145
Period size: 41 Copynumber: 2.7 Consensus size: 41
65760284 AAAAACGACA
* * *
65760294 CTAAAAGCCATGACTTTTAGCGACGTTTGAAAAAAAAGTGCCG
1 CTAAAAGTCATGGCTTTTAGCGACATTTG-AAAAAAAGT-CCG
* * *
65760337 TTAAAAGTCATGGTTTTTAGCGACATTTGTAAAAAAGTCCG
1 CTAAAAGTCATGGCTTTTAGCGACATTTGAAAAAAAGTCCG
*
65760378 CTAAAAGTCATGGCTTTTAGCGGCATTTG
1 CTAAAAGTCATGGCTTTTAGCGACATTTG
65760407 TTGGGAAAGT
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 29 0.48
42 8 0.13
43 24 0.39
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (41 bp):
CTAAAAGTCATGGCTTTTAGCGACATTTGAAAAAAAGTCCG
Found at i:65760383 original size:41 final size:42
Alignment explanation
Indices: 65760294--65760481 Score: 154
Period size: 43 Copynumber: 4.5 Consensus size: 42
65760284 AAAAACGACA
* * * *
65760294 CTAAAAGCCATGACTTTTAGCGACGTTTGAAAAAAAAGTGCCG
1 CTAAAAGTCATGGCTTTTAGCGACATTTG-TAAAAAAGTGCCG
* *
65760337 TTAAAAGTCATGGTTTTTAGCGACATTTGTAAAAAAGT-CCG
1 CTAAAAGTCATGGCTTTTAGCGACATTTGTAAAAAAGTGCCG
* ***
65760378 CTAAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAGTGCCG
1 CTAAAAGTCATGGCTTTTAGCGACATTTG-TAAAAAAGTGCCG
* * *
65760421 CT-AAA---ATGGCTTTTAGCGGCGTTTCTAGGAAAAA-TGCCG
1 CTAAAAGTCATGGCTTTTAGCGACATTTGTA--AAAAAGTGCCG
* * *
65760460 CTAAAACTCAAGGGTTTTAGCG
1 CTAAAAGTCATGGCTTTTAGCG
65760482 GCGTTTTTTC
Statistics
Matches: 118, Mismatches: 19, Indels: 16
0.77 0.12 0.10
Matches are distributed among these distances:
38 1 0.01
39 25 0.21
40 6 0.05
41 29 0.25
42 17 0.14
43 40 0.34
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
CTAAAAGTCATGGCTTTTAGCGACATTTGTAAAAAAGTGCCG
Found at i:65760484 original size:43 final size:41
Alignment explanation
Indices: 65760375--65760487 Score: 122
Period size: 39 Copynumber: 2.7 Consensus size: 41
65760365 GTAAAAAAGT
* * * * *
65760375 CCGCTAAAAGTCATGGCTTTTAGCGGCATTTGTTGGGAAAGTG
1 CCGCTAAAA-TCA-GGCTTTTAGCGGCGTTTCTAGGAAAAATG
65760418 CCGCTAAAAT--GGCTTTTAGCGGCGTTTCTAGGAAAAATG
1 CCGCTAAAATCAGGCTTTTAGCGGCGTTTCTAGGAAAAATG
*
65760457 CCGCTAAAACTCAAGGGTTTTAGCGGCGTTT
1 CCGCTAAAA-TC-AGGCTTTTAGCGGCGTTT
65760488 TTTCCACAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
39 33 0.55
40 1 0.02
42 1 0.02
43 25 0.42
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (41 bp):
CCGCTAAAATCAGGCTTTTAGCGGCGTTTCTAGGAAAAATG
Found at i:65760613 original size:31 final size:32
Alignment explanation
Indices: 65760559--65760640 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 32
65760549 TTCCTGCATT
* ** * *
65760559 AAAATCCAACCAAATCCAACAAATATAGCAT-
1 AAAATACAACCAAAAACAGCAAATATACCATA
* *
65760590 AAAATACAGCCAAAAACAGCAAATTTACCATAA
1 AAAATACAACCAAAAACAGCAAATATACCAT-A
65760623 AAAATACAACCAAAAACA
1 AAAATACAACCAAAAACA
65760641 TTAATTCTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
31 24 0.59
33 17 0.41
ACGTcount: A:0.60, C:0.23, G:0.04, T:0.13
Consensus pattern (32 bp):
AAAATACAACCAAAAACAGCAAATATACCATA
Found at i:65761348 original size:13 final size:14
Alignment explanation
Indices: 65761323--65761351 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
65761313 TGATGAATTG
65761323 AATTAAACAATTAT
1 AATTAAACAATTAT
65761337 AATTAAAC-ATTAT
1 AATTAAACAATTAT
65761350 AA
1 AA
65761352 CTATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:65762376 original size:24 final size:24
Alignment explanation
Indices: 65762343--65762499 Score: 233
Period size: 24 Copynumber: 6.4 Consensus size: 24
65762333 CTAGAGGCCT
*
65762343 AGCCTCTTTTAATAACTGGGGCAAA
1 AGCC-CTTTTAATAACTGGGGCATA
65762368 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
* *
65762392 AGCCCTTTTGATAACTGGGGCACA
1 AGCCCTTTTAATAACTGGGGCATA
*
65762416 AGCCCTTTTTTAATAACTGGGGCACA
1 AGCCC--TTTTAATAACTGGGGCATA
65762442 AGCCCTTTTAATAACTGGGGCATA
1 AGCCCTTTTAATAACTGGGGCATA
*
65762466 AGCCCTTTTTAATAACTAGGGCATA
1 AGCCC-TTTTAATAACTGGGGCATA
65762491 AGCCCTTTT
1 AGCCCTTTT
65762500 GCACTTCCTC
Statistics
Matches: 123, Mismatches: 6, Indels: 7
0.90 0.04 0.05
Matches are distributed among these distances:
24 73 0.59
25 27 0.22
26 23 0.19
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAACTGGGGCATA
Found at i:65762431 original size:74 final size:75
Alignment explanation
Indices: 65762349--65762499 Score: 259
Period size: 74 Copynumber: 2.0 Consensus size: 75
65762339 GCCTAGCCTC
* *
65762349 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCC-TTTTGATAACTGGGGC
1 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTAGGGC
65762413 ACAAGCCCTT
66 ACAAGCCCTT
*
65762423 TTTTAATAACTGGGGCACAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTAGGGC
1 TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTAGGGC
*
65762488 ATAAGCCCTT
66 ACAAGCCCTT
65762498 TT
1 TT
65762500 GCACTTCCTC
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
74 47 0.65
75 25 0.35
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (75 bp):
TTTTAATAACTGGGGCAAAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTAGGGC
ACAAGCCCTT
Found at i:65762448 original size:50 final size:49
Alignment explanation
Indices: 65762343--65762499 Score: 244
Period size: 50 Copynumber: 3.2 Consensus size: 49
65762333 CTAGAGGCCT
65762343 AGCCTCTTTTAATAACTGGGGCAAAAGCCC-TTTTAATAACTGGGGCATA
1 AGCC-CTTTTAATAACTGGGGCAAAAGCCCTTTTTAATAACTGGGGCATA
* * *
65762392 AGCCCTTTTGATAACTGGGGCACAAGCCCTTTTTTAATAACTGGGGCACA
1 AGCCCTTTTAATAACTGGGGCAAAAGCCC-TTTTTAATAACTGGGGCATA
* *
65762442 AGCCCTTTTAATAACTGGGGCATAAGCCCTTTTTAATAACTAGGGCATA
1 AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTTAATAACTGGGGCATA
65762491 AGCCCTTTT
1 AGCCCTTTT
65762500 GCACTTCCTC
Statistics
Matches: 99, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
48 23 0.23
49 31 0.31
50 45 0.45
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (49 bp):
AGCCCTTTTAATAACTGGGGCAAAAGCCCTTTTTAATAACTGGGGCATA
Found at i:65762574 original size:20 final size:20
Alignment explanation
Indices: 65762549--65762615 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
65762539 TTATGAATAC
65762549 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
65762569 ATCATGTGCATACCATACAT
1 ATCATGTGCATATCATACAT
*
65762589 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
65762609 ACCATGT
1 ATCATGT
65762616 TTATCAAAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:65762684 original size:25 final size:25
Alignment explanation
Indices: 65762652--65762699 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65762642 ATATATAAAC
* * *
65762652 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAACGGTCATTTTTA
65762677 CCTAGGGGCAAAACGGTCATTTT
1 CCTAGGGGCAAAACGGTCATTTT
65762700 CATATTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (25 bp):
CCTAGGGGCAAAACGGTCATTTTTA
Found at i:65769645 original size:9 final size:9
Alignment explanation
Indices: 65769631--65769852 Score: 114
Period size: 9 Copynumber: 24.0 Consensus size: 9
65769621 TATTTATGTA
65769631 TTATGTAAG
1 TTATGTAAG
*
65769640 TTATGTAAA
1 TTATGTAAG
65769649 TTATGTAAG
1 TTATGTAAG
* * **
65769658 GTATTTATC
1 TTATGTAAG
*
65769667 TTATGTAAA
1 TTATGTAAG
65769676 TTATGTAAG
1 TTATGTAAG
* *
65769685 ATATGATATATAT
1 -T-T-ATGTA-AG
65769698 TTATGT-A-
1 TTATGTAAG
65769705 TTATGTAAG
1 TTATGTAAG
*
65769714 TTATGTAAA
1 TTATGTAAG
65769723 TTATGTAAG
1 TTATGTAAG
* **
65769732 TTATTTATC
1 TTATGTAAG
*
65769741 TTATGTAAA
1 TTATGTAAG
65769750 TTATGTAAG
1 TTATGTAAG
** *
65769759 ACATGATACG
1 TTATG-TAAG
65769769 TCATTATGT-A-
1 ---TTATGTAAG
65769779 TTATGTAAG
1 TTATGTAAG
*
65769788 TTATGTAAA
1 TTATGTAAG
65769797 TTATGTAAG
1 TTATGTAAG
*
65769806 ATATGATGTATAT
1 -T-T-ATGTA-AG
*
65769819 TTATAT-A-
1 TTATGTAAG
65769826 TTATGTAAG
1 TTATGTAAG
*
65769835 TTATGTAAA
1 TTATGTAAG
65769844 TTATGTAAG
1 TTATGTAAG
65769853 ATATTTATCT
Statistics
Matches: 159, Mismatches: 36, Indels: 36
0.69 0.16 0.16
Matches are distributed among these distances:
7 17 0.11
8 5 0.03
9 105 0.66
10 11 0.07
11 4 0.03
12 12 0.08
13 5 0.03
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.46
Consensus pattern (9 bp):
TTATGTAAG
Found at i:65769655 original size:47 final size:47
Alignment explanation
Indices: 65769593--65769856 Score: 225
Period size: 47 Copynumber: 5.5 Consensus size: 47
65769583 AGGGATTATC
*
65769593 TTATGTAAATCATGTAAGATATGATATATATTTATGTATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAG
* *
65769640 TTATGTAAATTATGTAAGGTAT--T-TAT-CTTATGTAAATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATATTTATGT--ATTATGTAAG
* * * * * * **
65769685 ATATGATATATATTTATGTATTATG-TAAGTTATGTAAATTATGTAAGTTATTTATC
1 TTATG-TA-A-A-TTATGTA--A-GATATGATATAT-ATTTATGT-A-TTATGTAAG
* **
65769741 TTATGTAAATTATGTAAGACATGATACGTCA-TTATGTATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATAT-ATTTATGTATTATGTAAG
* *
65769788 TTATGTAAATTATGTAAGATATGATGTATATTTATATATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAG
65769835 TTATGTAAATTATGTAAGATAT
1 TTATGTAAATTATGTAAGATAT
65769857 TTATCTTATG
Statistics
Matches: 176, Mismatches: 24, Indels: 34
0.75 0.10 0.15
Matches are distributed among these distances:
43 6 0.03
44 3 0.02
45 15 0.09
46 3 0.02
47 89 0.51
48 2 0.01
49 14 0.08
50 8 0.05
51 3 0.02
52 8 0.05
53 2 0.01
54 3 0.02
55 4 0.02
56 16 0.09
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (47 bp):
TTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAG
Found at i:65769709 original size:74 final size:74
Alignment explanation
Indices: 65769588--65769805 Score: 375
Period size: 74 Copynumber: 2.9 Consensus size: 74
65769578 ATAAAAGGGA
*
65769588 TTATCTTATGTAAATCATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
65769653 GTAAGGTAT
66 GTAAGGTAT
65769662 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
1 TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
*
65769727 GTAAGTTAT
66 GTAAGGTAT
* **
65769736 TTATCTTATGTAAATTATGTAAGACATGATACGTCA-TTATGTATTATGTAAGTTATGTAAATTA
1 TTATCTTATGTAAATTATGTAAGATATGATATAT-ATTTATGTATTATGTAAGTTATGTAAATTA
65769800 TGTAAG
65 TGTAAG
65769806 ATATGATGTA
Statistics
Matches: 138, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
74 137 0.99
75 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.15, T:0.46
Consensus pattern (74 bp):
TTATCTTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTAT
GTAAGGTAT
Found at i:65769797 original size:121 final size:121
Alignment explanation
Indices: 65769667--65769945 Score: 479
Period size: 121 Copynumber: 2.3 Consensus size: 121
65769657 GGTATTTATC
65769667 TTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAG
* *
65769732 TTATTTATCTTATGTAAATTATGTAAGACATGATACGTCA-TTATGTATTATGTAAG
66 ATATTTATCTTATGTAAATTATGTAAGACATGATACAT-ATTTATGTATTATGTAAG
* *
65769788 TTATGTAAATTATGTAAGATATGATGTATATTTATATATTATGTAAGTTATGTAAATTATGTAAG
1 TTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAG
* *
65769853 ATATTTATCTTATGTAAATTGTGTAAGACATGATATATATTTATGTATTATGTAAG
66 ATATTTATCTTATGTAAATTATGTAAGACATGATACATATTTATGTATTATGTAAG
*
65769909 TTATGTAAATTATATAAGATATGATATATATTTATGT
1 TTATGTAAATTATGTAAGATATGATATATATTTATGT
65769946 TGATGGGATT
Statistics
Matches: 148, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
120 1 0.01
121 147 0.99
ACGTcount: A:0.37, C:0.02, G:0.14, T:0.46
Consensus pattern (121 bp):
TTATGTAAATTATGTAAGATATGATATATATTTATGTATTATGTAAGTTATGTAAATTATGTAAG
ATATTTATCTTATGTAAATTATGTAAGACATGATACATATTTATGTATTATGTAAG
Found at i:65769866 original size:74 final size:74
Alignment explanation
Indices: 65769788--65769930 Score: 241
Period size: 74 Copynumber: 1.9 Consensus size: 74
65769778 ATTATGTAAG
* * *
65769788 TTATGTAAATTATGTAAGATATGATGTATATTTATATATTATGTAAGTTATGTAAATTATGTAAG
1 TTATGTAAATTATGTAAGACATGATATATATTTATATATTATGTAAGTTATGTAAATTATATAAG
65769853 ATATTTATC
66 ATATTTATC
* *
65769862 TTATGTAAATTGTGTAAGACATGATATATATTTATGTATTATGTAAGTTATGTAAATTATATAAG
1 TTATGTAAATTATGTAAGACATGATATATATTTATATATTATGTAAGTTATGTAAATTATATAAG
65769927 ATAT
66 ATAT
65769931 GATATATATT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 64 1.00
ACGTcount: A:0.38, C:0.01, G:0.14, T:0.46
Consensus pattern (74 bp):
TTATGTAAATTATGTAAGACATGATATATATTTATATATTATGTAAGTTATGTAAATTATATAAG
ATATTTATC
Found at i:65770161 original size:13 final size:14
Alignment explanation
Indices: 65770130--65770161 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
65770120 TTTTTCGTGA
65770130 TTAAAATAAAATAT
1 TTAAAATAAAATAT
65770144 TTAAAATAAAAT-T
1 TTAAAATAAAATAT
65770157 TTAAA
1 TTAAA
65770162 TACAATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
TTAAAATAAAATAT
Found at i:65770234 original size:95 final size:95
Alignment explanation
Indices: 65770076--65770383 Score: 418
Period size: 86 Copynumber: 3.2 Consensus size: 95
65770066 AATAATGATT
65770076 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
65770141 TATTTAAAATAAAATTTTAAATACAATTTA
66 TATTTAAAATAAAATTTTAAATACAATTTA
*
65770171 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCCTGA-T----T-AAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
65770230 -A--TAAAATAAAATTTTAAATACAATTTA
66 TATTTAAAATAAAATTTTAAATACAATTTA
* * *
65770257 ATTTAATTAGGTAATTTAAAATTAAAATAAAAGTAGACAAAGTATTTATCGTGATTAAATTAAAA
1 ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTG-----ATTAAAA
*
65770322 TAAAATAATATCTTCAAAATAAAACTTTAAATACAATTTA
61 T--AA-AATAT-TT-AAAATAAAATTTTAAATACAATTTA
65770362 ATTTAATTAGGTAATTTAAAAA
1 ATTTAATTAGGTAATTTAAAAA
65770384 ATATTTAAAA
Statistics
Matches: 187, Mismatches: 7, Indels: 28
0.84 0.03 0.13
Matches are distributed among these distances:
86 75 0.40
88 1 0.01
89 3 0.02
90 1 0.01
91 1 0.01
92 1 0.01
94 1 0.01
95 53 0.28
96 1 0.01
99 1 0.01
100 2 0.01
101 1 0.01
104 1 0.01
105 45 0.24
ACGTcount: A:0.53, C:0.04, G:0.06, T:0.36
Consensus pattern (95 bp):
ATTTAATTAGGTAATTTAAAAATAAAATAAAAGTAGACAAAATATTTTTCGTGATTAAAATAAAA
TATTTAAAATAAAATTTTAAATACAATTTA
Found at i:65771872 original size:27 final size:26
Alignment explanation
Indices: 65771834--65771884 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
65771824 CAATCACATA
*
65771834 GTATTTTCTCTCAAAAGAAAGAAAGTT
1 GTATTTTCTCTC-AAACAAAGAAAGTT
65771861 GTATTTTCTCTCAAACAAAGAAAG
1 GTATTTTCTCTCAAACAAAGAAAG
65771885 CTGGTTCCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (26 bp):
GTATTTTCTCTCAAACAAAGAAAGTT
Found at i:65773659 original size:14 final size:14
Alignment explanation
Indices: 65773640--65773666 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
65773630 AAACTTCAGA
65773640 ATTTATGTATTTAG
1 ATTTATGTATTTAG
65773654 ATTTATGTATTTA
1 ATTTATGTATTTA
65773667 TATCAACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.00, G:0.11, T:0.59
Consensus pattern (14 bp):
ATTTATGTATTTAG
Found at i:65774855 original size:26 final size:24
Alignment explanation
Indices: 65774826--65774876 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
65774816 TTAGATAAAA
65774826 TTTGAAATCTTGAAAATTATTGAAAT
1 TTTGAAATCTTGAAAA-T-TTGAAAT
*
65774852 TTTGAAATCTTTAAAATTTGAAAT
1 TTTGAAATCTTGAAAATTTGAAAT
65774876 T
1 T
65774877 ATTTAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 8 0.33
25 1 0.04
26 15 0.62
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (24 bp):
TTTGAAATCTTGAAAATTTGAAAT
Found at i:65774881 original size:17 final size:17
Alignment explanation
Indices: 65774825--65774882 Score: 55
Period size: 16 Copynumber: 3.4 Consensus size: 17
65774815 ATTAGATAAA
*
65774825 ATTTGAAATCTTGAAAATT
1 ATTTAAAAT-TTG-AAATT
* *
65774844 ATTGAAATTTTGAAA-T
1 ATTTAAAATTTGAAATT
*
65774860 CTTTAAAATTTGAAATT
1 ATTTAAAATTTGAAATT
65774877 ATTTAA
1 ATTTAA
65774883 TATATATAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
16 13 0.42
17 9 0.29
18 3 0.10
19 6 0.19
ACGTcount: A:0.43, C:0.03, G:0.09, T:0.45
Consensus pattern (17 bp):
ATTTAAAATTTGAAATT
Found at i:65775063 original size:14 final size:15
Alignment explanation
Indices: 65775039--65775091 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 15
65775029 ACCCCTAAAT
65775039 CCCTAAACTCATAAC
1 CCCTAAACTCATAAC
*
65775054 CCCT-AACTCATAAA
1 CCCTAAACTCATAAC
* * * *
65775068 CCTTAGACCCTTAAC
1 CCCTAAACTCATAAC
65775083 CCCTAAACT
1 CCCTAAACT
65775092 TTAAACTCTA
Statistics
Matches: 28, Mismatches: 9, Indels: 2
0.72 0.23 0.05
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.36, C:0.40, G:0.02, T:0.23
Consensus pattern (15 bp):
CCCTAAACTCATAAC
Found at i:65775285 original size:22 final size:22
Alignment explanation
Indices: 65775260--65775322 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 22
65775250 CCTTGAGATA
*
65775260 TTAACTCATAAACTATAAACCC
1 TTAACTCATAAACCATAAACCC
* *
65775282 TTAAACT-TTAAACCCTAAACCC
1 TT-AACTCATAAACCATAAACCC
* * *
65775304 ATAATTCATAAACCTTAAA
1 TTAACTCATAAACCATAAA
65775323 ATATAAACTC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
21 3 0.09
22 25 0.78
23 4 0.12
ACGTcount: A:0.46, C:0.25, G:0.00, T:0.29
Consensus pattern (22 bp):
TTAACTCATAAACCATAAACCC
Found at i:65775288 original size:15 final size:14
Alignment explanation
Indices: 65775268--65775301 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
65775258 TATTAACTCA
65775268 TAAACTATAAACCC
1 TAAACTATAAACCC
*
65775282 TTAAACTTTAAACCC
1 -TAAACTATAAACCC
65775297 TAAAC
1 TAAAC
65775302 CCATAATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.47, C:0.26, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAACTATAAACCC
Found at i:65775341 original size:25 final size:25
Alignment explanation
Indices: 65775309--65775356 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
65775299 AACCCATAAT
* *
65775309 TCATAAACCTTAAAATATAAACTCA
1 TCATAAACCCTAAAACATAAACTCA
*
65775334 TCATAAACCCTAAACCATAAACT
1 TCATAAACCCTAAAACATAAACT
65775357 ATATACTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (25 bp):
TCATAAACCCTAAAACATAAACTCA
Found at i:65775725 original size:41 final size:41
Alignment explanation
Indices: 65775649--65775780 Score: 167
Period size: 41 Copynumber: 3.2 Consensus size: 41
65775639 ATGTTTTTGT
* *
65775649 GGCGCTTTTTAAAAAAACGCCGCTATAAATC-GAGCATTAGC
1 GGCG-TTTTTAAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* *
65775690 GGCGTTTTTCAAAAAGCGACGCTATAGATCTGAGCATTAGC
1 GGCGTTTTTAAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* * *
65775731 GGCGTTTTAAAAAAAGTGCCGCTATAGGTCTGAGCATTAGC
1 GGCGTTTTTAAAAAAGCGCCGCTATAGATCTGAGCATTAGC
* *
65775772 AGCGCTTTT
1 GGCGTTTTT
65775781 GGTAAAACGC
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 22 0.28
41 56 0.72
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (41 bp):
GGCGTTTTTAAAAAAGCGCCGCTATAGATCTGAGCATTAGC
Found at i:65777209 original size:12 final size:11
Alignment explanation
Indices: 65777187--65777275 Score: 51
Period size: 12 Copynumber: 7.6 Consensus size: 11
65777177 AACATATGTA
65777187 AATAA-ATAAT
1 AATAATATAAT
65777197 AATAATGATAAT
1 AATAAT-ATAAT
*
65777209 AAATAATATAAAA
1 -AATAATAT-AAT
65777222 AATAATAATAAT
1 AATAAT-ATAAT
65777234 AGA-AATATAAAT
1 A-ATAATAT-AAT
*
65777246 AGATAA-ATAAA
1 A-ATAATATAAT
65777257 AATTAGATA-AAT
1 AA-TA-ATATAAT
65777269 AATAATA
1 AATAATA
65777276 GTATTTGAAT
Statistics
Matches: 64, Mismatches: 4, Indels: 22
0.71 0.04 0.24
Matches are distributed among these distances:
10 9 0.14
11 9 0.14
12 32 0.50
13 14 0.22
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.28
Consensus pattern (11 bp):
AATAATATAAT
Found at i:65777239 original size:15 final size:15
Alignment explanation
Indices: 65777190--65777276 Score: 53
Period size: 15 Copynumber: 6.0 Consensus size: 15
65777180 ATATGTAAAT
65777190 AAATAATAATAAT-G
1 AAATAATAATAATAG
*
65777204 ATAATAAATAAT-ATAAA
1 A-AAT-AATAATAAT-AG
65777221 AAATAATAATAATAG
1 AAATAATAATAATAG
65777236 AAAT-AT-A-AATAG
1 AAATAATAATAATAG
* *
65777248 ATA-AATAAAAATTAG
1 AAATAATAATAA-TAG
*
65777263 ATA-AATAATAATAG
1 AAATAATAATAATAG
65777277 TATTTGAATA
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
12 9 0.15
13 2 0.03
14 8 0.13
15 29 0.48
16 11 0.18
17 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAATAATAATAATAG
Found at i:65777253 original size:14 final size:15
Alignment explanation
Indices: 65777236--65777270 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
65777226 ATAATAATAG
*
65777236 AAATATAAA-TAGAT
1 AAATAAAAATTAGAT
65777250 AAATAAAAATTAGAT
1 AAATAAAAATTAGAT
65777265 AAATAA
1 AAATAA
65777271 TAATAGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AAATAAAAATTAGAT
Found at i:65779033 original size:143 final size:143
Alignment explanation
Indices: 65778812--65779622 Score: 1077
Period size: 143 Copynumber: 5.7 Consensus size: 143
65778802 CTTCAAGGAG
* * * *
65778812 ATAAGAATT-ACTGTCTTCAGTCTGCGCCGCTGCAACTTCAGGGGGATAAGACTGGTGGCTTCAA
1 ATAAG-ATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAA
** * * *
65778876 TCCACTCCACTGCAACTTTAGGAAGATAAGATCCGCCATAATTTGTAGCTTTAATATGTTCCACT
65 TCTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACT
* *
65778941 GCAATTCTAGGGAA
130 GCAACTCCAGGGAA
* * * *
65778955 ATAAGATTCACTTTCTTCAGTCTGCTCCACTGTAACTTCAGGGAGATAAGGCTAGTAGCTTCAAT
1 ATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* * * *
65779020 CTGCTCCAGTGCAACTTCAGAAAGATAAGATCCGCCATAATCTATAGCTTCAATCTGTTCCACTG
66 CTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
65779085 CAACTCCAGGGAA
131 CAACTCCAGGGAA
* * * * *
65779098 ATAAGATTCACTTTTTTCAATCTGCTTCGCTGCAACTTTAGGGAGATAAGGCTGGTAGCTTCAAT
1 ATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* * * * *
65779163 CTGCTTCACCGCAACTTCAAGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTATTCTACTG
66 CTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
65779228 CAACTCCAGGGAA
131 CAACTCCAGGGAA
* * * * *
65779241 ATGAGATTCACTTTTTTCAGTCTGCTTCACTGCAATTTCAGGGAGATAAGGCTGGTGGCTTCAAT
1 ATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* * * *
65779306 CTGCTCCACTACAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCATTCTGTTTCAATG
66 CTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
65779371 CAACTCCAGGGAA
131 CAACTCCAGGGAA
* * * *
65779384 ATAAGATTCGCTTTCTTCAGTCTGTTCTGCTGCAACTTCAGGGAAATAAGGCTGGTGGCTTCAAT
1 ATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* * * *** *
65779449 CTGCTCCACTACAA-TATTAGAAAGATAAGATCAATCATAATTTGTAGCTTCAATTTGTTCCACT
66 CTGCTCCACTGCAACT-TCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACT
*
65779513 GCAACTCTAGGGAA
130 GCAACTCCAGGGAA
* * *
65779527 ATAAGATTCGCTTTCTTCAGTCTGCTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGATTCAAT
1 ATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
* * * *
65779592 CTGCTCCACTGCTACTTTAGGGAGATGAGAT
66 CTGCTCCACTGCAACTTCAGGAAGATAAGAT
65779623 TTGTAGATTT
Statistics
Matches: 586, Mismatches: 79, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
142 4 0.01
143 581 0.99
144 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (143 bp):
ATAAGATTCACTTTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTCAAT
CTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTCAATCTGTTCCACTG
CAACTCCAGGGAA
Found at i:65779036 original size:44 final size:45
Alignment explanation
Indices: 65778969--65779334 Score: 153
Period size: 44 Copynumber: 7.8 Consensus size: 45
65778959 GATTCACTTT
* *
65778969 CTTCAGTCTGCTCCACTGTAACTTCAGGGAGATAAGGCT-AGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAAGTAG
* ** *
65779013 CTTCAATCTGCTCCAGTGCAACTTCAGAAAGATAAGATCCGCCATAATCTATAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-TAA---GTAG
* * * ** * * **
65779067 CTTCAATCTGTTCCACTGCAACTCCAGGGAAATAAGATTCACTTT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAAGTAG
* * * * *
65779112 TTTCAATCTGCTTCGCTGCAACTTTAGGGAGATAAGGCT-GGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAAGTAG
* * * *
65779156 CTTCAATCTGCTTCACCGCAACTTCAAGAAGATAAGATCCGCCATAATTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-TAA---GTAG
** * * * * ** * * **
65779210 CTTCAATCTATTCTACTGCAACTCCAGGGAAATGAGATTCACTTT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAAGTAG
* * * * * *
65779255 TTTCAGTCTGCTTCACTGCAATTTCAGGGAGATAAGGCT-GGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAAGTAG
* *
65779299 CTTCAATCTGCTCCACTACAACTTCAGGAAGATAAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG
65779335 ATCCGCCATA
Statistics
Matches: 226, Mismatches: 76, Indels: 40
0.66 0.22 0.12
Matches are distributed among these distances:
44 93 0.41
45 59 0.26
48 6 0.03
49 2 0.01
50 2 0.01
51 1 0.00
54 63 0.28
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.29
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAAGTAG
Found at i:65786348 original size:19 final size:20
Alignment explanation
Indices: 65786326--65786377 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 20
65786316 GGTCATTTCG
* *
65786326 TGAAATTTAATGCATATG-A
1 TGAAATGTAATGCAGATGCA
65786345 TGAAATGTAATGCAGATGCA
1 TGAAATGTAATGCAGATGCA
65786365 TGAAATG-AATGCA
1 TGAAATGTAATGCA
65786378 AAAAGAGGCA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 22 0.73
20 8 0.27
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.29
Consensus pattern (20 bp):
TGAAATGTAATGCAGATGCA
Found at i:65789012 original size:3 final size:3
Alignment explanation
Indices: 65789004--65789171 Score: 175
Period size: 3 Copynumber: 56.7 Consensus size: 3
65788994 TAAATAAATA
* * *
65789004 AAT AAT AAT AAT -AT AAT AGT AA- AA- AAT AAT AGT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
*
65789049 AAT AAT AAT AAAT AAT AAT AGT AAAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT -AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT
* * *
65789096 AAT AGT AAT AAT AAT AAT GAT AAT AAAT AAT -AT AAA AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT
* * * *
65789141 AAT AAT AGT AGT AGT AGT AA- AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
65789172 AACAATGATA
Statistics
Matches: 142, Mismatches: 16, Indels: 14
0.83 0.09 0.08
Matches are distributed among these distances:
2 10 0.07
3 124 0.87
4 8 0.06
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:65789477 original size:15 final size:15
Alignment explanation
Indices: 65789457--65789486 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65789447 CATTTTATTT
*
65789457 ATATTAGGATAATTA
1 ATATTAAGATAATTA
65789472 ATATTAAGATAATTA
1 ATATTAAGATAATTA
65789487 TAAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:65791551 original size:13 final size:12
Alignment explanation
Indices: 65791533--65791562 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
65791523 AAAACAAATG
65791533 AATAATATGTAA
1 AATAATATGTAA
65791545 CAATAATATGTAA
1 -AATAATATGTAA
65791558 AATAA
1 AATAA
65791563 CATAAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (12 bp):
AATAATATGTAA
Found at i:65791964 original size:26 final size:24
Alignment explanation
Indices: 65791926--65791974 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
65791916 ACATAAATAA
*
65791926 ATTTAAAAGAATATATATATAAAG
1 ATTTAAAAGAATATATACATAAAG
*
65791950 ATTTAAAAGAAAATATTTACATAAA
1 ATTTAAAAG--AATATATACATAAA
65791975 ATAATACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 9 0.43
26 12 0.57
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (24 bp):
ATTTAAAAGAATATATACATAAAG
Found at i:65794109 original size:14 final size:15
Alignment explanation
Indices: 65794077--65794132 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 15
65794067 AAAATAGTAC
65794077 ATATTATTTTATCGATT
1 ATATTATTTTAT-G-TT
65794094 ATATTA-TTTATGTT
1 ATATTATTTTATGTT
65794108 AT-TATATTTTAT-TT
1 ATAT-TATTTTATGTT
65794122 ATA-TATTTTAT
1 ATATTATTTTAT
65794133 TACATATCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
13 9 0.25
14 10 0.28
15 6 0.17
16 5 0.14
17 6 0.17
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (15 bp):
ATATTATTTTATGTT
Found at i:65794128 original size:13 final size:14
Alignment explanation
Indices: 65794081--65794133 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 14
65794071 TAGTACATAT
**
65794081 TATTTTATCGATTA
1 TATTTTATTTATTA
65794095 TATTATTTATGTTATTA
1 TA-T-TTTAT-TTATTA
65794112 TATTTTATTTA-TA
1 TATTTTATTTATTA
65794125 TATTTTATT
1 TATTTTATT
65794134 ACATATCATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
13 11 0.32
14 5 0.15
15 6 0.18
16 6 0.18
17 6 0.18
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (14 bp):
TATTTTATTTATTA
Found at i:65794158 original size:14 final size:14
Alignment explanation
Indices: 65794091--65794159 Score: 63
Period size: 13 Copynumber: 4.9 Consensus size: 14
65794081 TATTTTATCG
65794091 ATTATAT-TATTTAT
1 ATTATATATATTT-T
*
65794105 GTTAT-TATATTTT
1 ATTATATATATTTT
65794118 ATT-TATATATTTT
1 ATTATATATATTTT
65794131 ATTACATATCATATTTT
1 ATT--ATAT-ATATTTT
*
65794148 GTTATATATATT
1 ATTATATATATT
65794160 ATTCCTTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
12 1 0.02
13 15 0.33
14 14 0.30
15 4 0.09
16 3 0.07
17 9 0.20
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (14 bp):
ATTATATATATTTT
Found at i:65801183 original size:16 final size:17
Alignment explanation
Indices: 65801164--65801203 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
65801154 AATCTTATTT
65801164 TTATATAATTATT-TTA
1 TTATATAATTATTGTTA
65801180 TTATAT-ATTATTGTTA
1 TTATATAATTATTGTTA
*
65801196 TTTTATAA
1 TTATATAA
65801204 AATATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 6 0.29
16 14 0.67
17 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TTATATAATTATTGTTA
Found at i:65801197 original size:21 final size:21
Alignment explanation
Indices: 65801172--65801212 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65801162 TTTTATATAA
* *
65801172 TTATTTTATTATATATTATTG
1 TTATTTTATAAAATATTATTG
65801193 TTATTTTATAAAATATTATT
1 TTATTTTATAAAATATTATT
65801213 ATTTCTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTTTATAAAATATTATTG
Found at i:65801201 original size:18 final size:17
Alignment explanation
Indices: 65801140--65801253 Score: 56
Period size: 18 Copynumber: 6.4 Consensus size: 17
65801130 TATATTGTTA
*
65801140 TTTATTTTAT-TTTTAAT
1 TTTATTTTATATATT-AT
*
65801157 CTTATTTTTATATAATTAT
1 TTTA-TTTTATAT-ATTAT
65801176 TTTA--TTATATATTAT
1 TTTATTTTATATATTAT
* *
65801191 TGTTATTTTATAAAATAT
1 T-TTATTTTATATATTAT
*
65801209 TATTATTTCTCAT-TCTTAT
1 T-TTATTT-T-ATATATTAT
*
65801228 TTATATATTATTATATTAT
1 TT-TATTTTA-TATATTAT
*
65801247 ATTATTT
1 TTTATTT
65801254 ATTTATATAT
Statistics
Matches: 73, Mismatches: 13, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
15 6 0.08
16 9 0.12
17 4 0.05
18 29 0.40
19 21 0.29
20 4 0.05
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.65
Consensus pattern (17 bp):
TTTATTTTATATATTAT
Found at i:65801247 original size:13 final size:13
Alignment explanation
Indices: 65801159--65801261 Score: 51
Period size: 13 Copynumber: 8.2 Consensus size: 13
65801149 TTTTTAATCT
*
65801159 TATTTTTATA-TA
1 TATTATTATATTA
*
65801171 -ATTATTTTATTA
1 TATTATTATATTA
65801183 TA-TATTAT-TGT-
1 TATTATTATAT-TA
**
65801194 TATT-TTATAAAA
1 TATTATTATATTA
*
65801206 TATTATTAT-TTC
1 TATTATTATATTA
* *
65801218 TCATTCTTATTTATA
1 T-ATTATTATAT-TA
65801233 TATTATTATATTA
1 TATTATTATATTA
65801246 TATTATT-TATTTA
1 TATTATTATA-TTA
65801259 TAT
1 TAT
65801262 ATACGTATAT
Statistics
Matches: 68, Mismatches: 12, Indels: 21
0.67 0.12 0.21
Matches are distributed among these distances:
11 14 0.21
12 16 0.24
13 27 0.40
14 9 0.13
15 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (13 bp):
TATTATTATATTA
Found at i:65801303 original size:16 final size:15
Alignment explanation
Indices: 65801279--65801321 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
65801269 TATACTTTCA
*
65801279 TATTATATATTATAAT
1 TATTTTATATTAT-AT
*
65801295 TATTTTATATTATGT
1 TATTTTATATTATAT
*
65801310 CATTTTATATTA
1 TATTTTATATTA
65801322 CTACGTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (15 bp):
TATTTTATATTATAT
Found at i:65801511 original size:21 final size:21
Alignment explanation
Indices: 65801487--65801537 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
65801477 ATCATCAATT
*
65801487 ACTTATTTTGTAT-TATTCTAA
1 ACTTATTTT-TATATATTATAA
*
65801508 ACTTATGTTTATATATTATAA
1 ACTTATTTTTATATATTATAA
*
65801529 AATTATTTT
1 ACTTATTTT
65801538 ATTATAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 3 0.12
21 22 0.88
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (21 bp):
ACTTATTTTTATATATTATAA
Found at i:65801687 original size:19 final size:20
Alignment explanation
Indices: 65801665--65801706 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
65801655 ATATATTGCA
*
65801665 TATTAAATACTAT-TTTTAT
1 TATTAAATACCATATTTTAT
65801684 TATTAAATACCATATTTTAT
1 TATTAAATACCATATTTTAT
65801704 TAT
1 TAT
65801707 ACGAATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTAAATACCATATTTTAT
Found at i:65805992 original size:19 final size:19
Alignment explanation
Indices: 65805970--65806011 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
65805960 CATGCATTTC
65805970 CATTGCATTGCATCATGTG
1 CATTGCATTGCATCATGTG
*
65805989 CATTGCATTGCATCATTTG
1 CATTGCATTGCATCATGTG
65806008 CATT
1 CATT
65806012 AGATTTTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.17, T:0.40
Consensus pattern (19 bp):
CATTGCATTGCATCATGTG
Found at i:65809946 original size:44 final size:44
Alignment explanation
Indices: 65809897--65810431 Score: 781
Period size: 44 Copynumber: 12.2 Consensus size: 44
65809887 TCCTTGAAGC
* * *
65809897 AGATAACAGATTTGGCGTCTCTGTAACGGCAGAGAGCAAATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * *
65809941 AGATAATAGATTTGGCGTATCTGTAGCGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* **
65809985 AGATAACAGATTTGGCGTCTTTGTAGCGATGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
65810029 AGATAACAGATTTGGCGTCTCTATAGTGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
65810073 AGAT----GATTTGGCATCTCTATAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
65810113 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
65810157 AGATAACAGATTTGGCGTCTCCGTAGCGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
65810201 AGATAACAGATTTGGCGTCTCTGTAGCGGCAGAGAGCAAATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* **
65810245 AGATAATAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATAAA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* * *
65810289 AAATAACAGATTTGGCGTCTCTATAGCGGCGGAAAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* *
65810333 AGATAACAGATTTGGCGTCTTTGTAGTGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
* ** *
65810377 AGATGACAGATTTGGCGTCTCTGTATTGGCAGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
*
65810421 AAATAACAGAT
1 AGATAACAGAT
65810432 CGGTGTTCCT
Statistics
Matches: 442, Mismatches: 45, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
40 38 0.09
44 404 0.91
ACGTcount: A:0.31, C:0.16, G:0.31, T:0.22
Consensus pattern (44 bp):
AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGCAGATCGA
Found at i:65815593 original size:25 final size:25
Alignment explanation
Indices: 65815559--65815609 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
65815549 GTTTAGGGGC
*
65815559 AAAATTGTAATTTTCCCTAAATATG
1 AAAATTGTAATTTTCCCAAAATATG
*
65815584 AAAATTGTAATTTTTCCAAAATATG
1 AAAATTGTAATTTTCCCAAAATATG
65815609 A
1 A
65815610 TTTTGGGTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (25 bp):
AAAATTGTAATTTTCCCAAAATATG
Found at i:65816114 original size:47 final size:47
Alignment explanation
Indices: 65815998--65816216 Score: 206
Period size: 47 Copynumber: 4.7 Consensus size: 47
65815988 CGGATATTTG
* * *
65815998 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTATGGATGCGAAC--
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATGA--GATG-TAACTA
*
65816046 -G--TCCGAACTCGTTGAGTTGAGTCCAAGTTCGTGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATGAGATGTAACTA
* * * *
65816090 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC--
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCA-TGA--GATG-TAACTA
* *
65816139 -G--TCCAAACTCGTTGAGTTGAGTCCGAGTTCATGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATGAGATGTAACTA
*
65816183 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCA
1 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCA
65816217 CCTATGGATA
Statistics
Matches: 141, Mismatches: 16, Indels: 29
0.76 0.09 0.16
Matches are distributed among these distances:
42 6 0.04
43 8 0.06
45 34 0.24
46 28 0.20
47 55 0.39
48 3 0.02
50 4 0.03
51 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCATGAGATGTAACTA
Found at i:65816158 original size:93 final size:93
Alignment explanation
Indices: 65815998--65816260 Score: 438
Period size: 93 Copynumber: 2.8 Consensus size: 93
65815988 CGGATATTTG
*
65815998 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
65816062 TTGAGTCCAAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
*
65816090 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCAAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
65816155 TTGAGTCCGAGTTCATGAGATGTAACTA
66 TTGAGTCCGAGTTCATGAGATGTAACTA
* * * * *
65816183 GGCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACCTATGGATACGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
65816248 TTGAGTCCGAGTT
66 TTGAGTCCGAGTT
65816261 TGCTTATGGG
Statistics
Matches: 160, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
92 33 0.21
93 127 0.79
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAGATGTAACTA
Found at i:65816163 original size:46 final size:46
Alignment explanation
Indices: 65816002--65816269 Score: 239
Period size: 46 Copynumber: 5.8 Consensus size: 46
65815992 TATTTGGGCA
65816002 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
65816047 TCCGAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
*
65816092 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * *
65816140 TCCAAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * * *
65816185 CATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACCTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * **
65816233 CCCGAGCTCGTTGAGTTGAGTCCGAGTTTGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
65816270 GCGGGTTACA
Statistics
Matches: 180, Mismatches: 24, Indels: 37
0.75 0.10 0.15
Matches are distributed among these distances:
42 6 0.03
43 8 0.04
45 34 0.19
46 60 0.33
47 54 0.30
48 5 0.03
50 7 0.04
51 6 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:65823644 original size:15 final size:15
Alignment explanation
Indices: 65823624--65823653 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65823614 CATTTTATTT
*
65823624 ATATTAGGATAATTA
1 ATATTAAGATAATTA
65823639 ATATTAAGATAATTA
1 ATATTAAGATAATTA
65823654 TGAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:65824621 original size:12 final size:12
Alignment explanation
Indices: 65824601--65824630 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
65824591 CTACTTCCCC
65824601 TTTACTGTTATT
1 TTTACTGTTATT
*
65824613 TTTATTGTTATT
1 TTTACTGTTATT
65824625 TTTACT
1 TTTACT
65824631 ATTTTACAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (12 bp):
TTTACTGTTATT
Found at i:65825084 original size:20 final size:20
Alignment explanation
Indices: 65825052--65825090 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
65825042 CATTCAATTA
65825052 ATTTATATTTGGTTTATTTTT
1 ATTTATATTTGGTTT-TTTTT
65825073 ATTTAT-TTTGGTTTTTTT
1 ATTTATATTTGGTTTTTTT
65825091 GGGTGTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.74
Consensus pattern (20 bp):
ATTTATATTTGGTTTTTTTT
Found at i:65825753 original size:133 final size:133
Alignment explanation
Indices: 65825357--65826179 Score: 1153
Period size: 133 Copynumber: 6.2 Consensus size: 133
65825347 ACTGCAACTT
* * *
65825357 CTCCGCTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTATTACC-CTACGAC-TTAGGG
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT-CCACTACAACTTTAGGG
* * * * * *
65825420 AGTTA--A-GGCTTGCTTAAATCTGCTTCACCGCAACTTTAGGAAGCCAAGATTCATCGTCTTCA
65 AGCTAGGATGG-TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCG
65825482 ATTTG
129 ATTTG
* * ** *
65825487 CTCCACTGCAACTTCATGGAAACAAGATCTACAATCTTCAGCCTGTTACC-CTACGAC-TTAGGG
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACT-CCACTACAACTTTAGGG
* * * * * * *
65825550 AGTTA--A-GGCTTGCTTAAATCTACTTCACCGTAATTTCAGGAAGCCGAGATTCGTCGTCTTCG
65 AGCTAGGATGG-TGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCG
65825612 ATTTG
129 ATTTG
* * *
65825617 CTCCACTACAACTTCATGGAGACAAGATTTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
* * * *
65825682 GCTAGGATGGTGGGTTAAATCTGCTTCACTACAACTTCAAGAAGCCAAAATTCGTCGTCTTCGAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
65825747 TTG
131 TTG
*
65825750 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCTACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
* * *
65825815 GCTAGTATGGTGGCTTAAATCTGCTTTACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCAAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
65825880 TTG
131 TTG
* * *
65825883 CTCCACTACAATTTTAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
* * *
65825948 GCTAGGATGGTGGCTTAAATCTGCTTCACTACAACTTCAAGAAGCCAAGATTCGTCATCTTCGAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
65826013 TTG
131 TTG
*
65826016 CTCCACTGCGACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
* *
65826081 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCATTGTCTTCGAT
66 GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
*
65826146 CTG
131 TTG
*
65826149 CTCCACTGCAACTTCATGGAGACAAGATCTA
1 CTCCACTGCAACTTCAGGGAGACAAGATCTA
65826180 TAGAATCAGT
Statistics
Matches: 627, Mismatches: 61, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
129 2 0.00
130 167 0.27
131 10 0.02
133 446 0.71
134 2 0.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (133 bp):
CTCCACTGCAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTACTCCACTACAACTTTAGGGA
GCTAGGATGGTGGCTTAAATCTGCTTCACTGCAACTTCAGGAAGCCAAGATTCGTCGTCTTCGAT
TTG
Found at i:65832898 original size:16 final size:16
Alignment explanation
Indices: 65832854--65832899 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 16
65832844 TAGAAAGAAT
65832854 TATATGTATAAAATAA
1 TATATGTATAAAATAA
*
65832870 TATAAGGT-T--AATAA
1 TAT-ATGTATAAAATAA
65832884 TATATGTATAAAATAA
1 TATATGTATAAAATAA
65832900 AATTGATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
13 3 0.12
14 9 0.38
16 9 0.38
17 3 0.12
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (16 bp):
TATATGTATAAAATAA
Found at i:65834355 original size:20 final size:20
Alignment explanation
Indices: 65834323--65834361 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
65834313 CATTCAATTA
65834323 ATTTATATTTGGTTTATTTTT
1 ATTTATATTTGGTTT-TTTTT
65834344 ATTTAT-TTTGGTTTTTTT
1 ATTTATATTTGGTTTTTTT
65834362 GGGTGTTGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 8 0.44
21 6 0.33
ACGTcount: A:0.15, C:0.00, G:0.10, T:0.74
Consensus pattern (20 bp):
ATTTATATTTGGTTTTTTTT
Found at i:65836378 original size:20 final size:20
Alignment explanation
Indices: 65836355--65836393 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
65836345 TCTATATGAA
65836355 AAGTACATTATAACATTTAT
1 AAGTACATTATAACATTTAT
** *
65836375 AAGTAGTTTATAACTTTTA
1 AAGTACATTATAACATTTA
65836394 ATGGGTATAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (20 bp):
AAGTACATTATAACATTTAT
Found at i:65838398 original size:27 final size:27
Alignment explanation
Indices: 65838368--65838422 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
65838358 TCCAAGCCAA
65838368 TTTAGACTTAGCAGTTCTTCATACTTT
1 TTTAGACTTAGCAGTTCTTCATACTTT
*
65838395 TTTAGACTTAGCAGTTCTTCATGCTTT
1 TTTAGACTTAGCAGTTCTTCATACTTT
65838422 T
1 T
65838423 GTGTCAATCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (27 bp):
TTTAGACTTAGCAGTTCTTCATACTTT
Found at i:65839704 original size:21 final size:22
Alignment explanation
Indices: 65839680--65839720 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
65839670 ATTACATATT
*
65839680 TTTAGTTTTA-ATTTTTTAAAA
1 TTTAGTTTTAGAATTTTTAAAA
*
65839701 TTTATTTTTAGAATTTTTAA
1 TTTAGTTTTAGAATTTTTAA
65839721 CCAGTCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (22 bp):
TTTAGTTTTAGAATTTTTAAAA
Found at i:65851899 original size:286 final size:286
Alignment explanation
Indices: 65851387--65851933 Score: 1015
Period size: 286 Copynumber: 1.9 Consensus size: 286
65851377 AAAAAAAAAA
* *
65851387 ATTCAAAATAACAGAAAGGCCATAAGCGTAGCAGACAAGAACTTTATTCAAGAATCATATCAAGA
1 ATTCAAAATAACAAAAAGGCCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGA
*
65851452 TATACGAGCGAGACAAAAGTAAAATAACATGACAACTAAAACTGTAAGACATGGATCAGCTTAGC
66 TATACGAGCGAGACAAAAGTAAAATAAAATGACAACTAAAACTGTAAGACATGGATCAGCTTAGC
65851517 AGGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTT
131 AGGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTT
*
65851582 AGCAGTCCCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGC
196 AGCAGTACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGC
65851647 ATAAGGAACTAAATAAATAAATAAGC
261 ATAAGGAACTAAATAAATAAATAAGC
*
65851673 ATTCAAAATAACAAAAAGGTCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGA
1 ATTCAAAATAACAAAAAGGCCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGA
* *
65851738 TATACGAGCGAGACAAAAAGTAAAATAAAATGATAACTAAGACTGTAAGACATGGATCAGCTTAG
66 TATACGAGCGAGAC-AAAAGTAAAATAAAATGACAACTAAAACTGTAAGACATGGATCAGCTTAG
65851803 CAGGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACT
130 CAGGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACT
65851868 TAGCAG-ACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAG
195 TAGCAGTACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAG
65851932 CA
260 CA
65851934 GGCGTTTTAT
Statistics
Matches: 253, Mismatches: 7, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
286 135 0.53
287 118 0.47
ACGTcount: A:0.46, C:0.16, G:0.14, T:0.24
Consensus pattern (286 bp):
ATTCAAAATAACAAAAAGGCCATAAGCATAGCAGACAAGAACTTTATTCAAGAATCATATCAAGA
TATACGAGCGAGACAAAAGTAAAATAAAATGACAACTAAAACTGTAAGACATGGATCAGCTTAGC
AGGAAATCAATCTTTCTCTCATCTTTAAAGAAATGTCAAAGTTTACAGAAGTAGTCAATCAACTT
AGCAGTACCTAATTTTCAAGAGTAAATAATTAAAATTACAATATAAAACAGTCCCTCAAATTAGC
ATAAGGAACTAAATAAATAAATAAGC
Found at i:65859946 original size:55 final size:53
Alignment explanation
Indices: 65859838--65860022 Score: 183
Period size: 55 Copynumber: 3.4 Consensus size: 53
65859828 ATTAGGGTTT
* * * *
65859838 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTTAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGAC-ATT-GATAAG-TTCATAAGGC
* ** * *
65859893 AAGGAAATTATGTAAGACCATGTCAAGACATGACATTGATAAGTTACTATAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTT-C-ATAAGGC
* * * * * *
65859948 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAGGC
65860001 AAGGATACCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
65860023 GCAATGGTAA
Statistics
Matches: 105, Mismatches: 22, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
52 2 0.02
53 31 0.30
54 4 0.04
55 68 0.65
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGACATTGATAAGTTCATAAGGC
Found at i:65864606 original size:19 final size:15
Alignment explanation
Indices: 65864560--65864601 Score: 77
Period size: 15 Copynumber: 2.9 Consensus size: 15
65864550 CGATGAATTT
65864560 ATTGAAATTATATTG
1 ATTGAAATTATATTG
65864575 ATTGAAATTATATTG
1 ATTGAAATTATATTG
65864590 ATTG-AATTATAT
1 ATTGAAATTATAT
65864602 AATATATATG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.40, C:0.00, G:0.12, T:0.48
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:65869352 original size:22 final size:23
Alignment explanation
Indices: 65869326--65869371 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
65869316 CAACCAAACC
65869326 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
65869348 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
65869371 A
1 A
65869372 CGTCATTACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:65869377 original size:23 final size:23
Alignment explanation
Indices: 65869333--65869377 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
65869323 ACCAATTCAA
*
65869333 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
65869356 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
65869378 TACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:65872946 original size:18 final size:18
Alignment explanation
Indices: 65872925--65872967 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
65872915 GTTAATTTGA
* *
65872925 TTAATTTGGGTAATTCGG
1 TTAATTTGAGTAATTCAG
* *
65872943 TTAATTCGATTAATTCAG
1 TTAATTTGAGTAATTCAG
65872961 TTAATTT
1 TTAATTT
65872968 TATACTTATT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (18 bp):
TTAATTTGAGTAATTCAG
Found at i:65872965 original size:27 final size:27
Alignment explanation
Indices: 65872908--65872966 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
65872898 TTTATACAAA
* **
65872908 TAATTCGGTTAATTTGATTAATTTGGG
1 TAATTCGGTTAATTCGATTAATTCAGG
*
65872935 TAATTCGGTTAATTCGATTAATTCAGT
1 TAATTCGGTTAATTCGATTAATTCAGG
65872962 TAATT
1 TAATT
65872967 TTATACTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.07, G:0.17, T:0.47
Consensus pattern (27 bp):
TAATTCGGTTAATTCGATTAATTCAGG
Found at i:65873100 original size:28 final size:29
Alignment explanation
Indices: 65873043--65873103 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
65873033 CAAATTAACC
* ***
65873043 AAAAAAATTTCGGTTCGGTTAATTTTTTA
1 AAAAAAATTTCAGTTCGGTTAATCAGTTA
65873072 AAAAAAATTTCAGTTCGGTTAA-CAGTTA
1 AAAAAAATTTCAGTTCGGTTAATCAGTTA
65873100 AAAA
1 AAAA
65873104 TTTTGAAGGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
28 7 0.25
29 21 0.75
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (29 bp):
AAAAAAATTTCAGTTCGGTTAATCAGTTA
Found at i:65875569 original size:24 final size:23
Alignment explanation
Indices: 65875524--65875569 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
65875514 AAAATAGTTT
* *
65875524 TAAAAAAAAATCTGTTTGATAAA
1 TAAAAAAAAATATGTTTAATAAA
*
65875547 TAAAAAAAAATATTTTTCAATAA
1 TAAAAAAAAATATGTTT-AATAA
65875570 TGAAAACTGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
TAAAAAAAAATATGTTTAATAAA
Found at i:65876626 original size:37 final size:37
Alignment explanation
Indices: 65876571--65876646 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
65876561 ATATTATGAG
65876571 TTTGATTGCATTTTACATCAAAGAGCAAACAATCCTT
1 TTTGATTGCATTTTACATCAAAGAGCAAACAATCCTT
*
65876608 TTTGGTTGCATTTTACATCAAAGAGCAAACAATCCTT
1 TTTGATTGCATTTTACATCAAAGAGCAAACAATCCTT
65876645 TT
1 TT
65876647 ATGTTAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (37 bp):
TTTGATTGCATTTTACATCAAAGAGCAAACAATCCTT
Found at i:65877346 original size:13 final size:13
Alignment explanation
Indices: 65877330--65877392 Score: 89
Period size: 12 Copynumber: 5.1 Consensus size: 13
65877320 AATGGAAGAT
65877330 GGAAAATGGG-AAG
1 GGAAAA-GGGAAAG
65877343 GG-AAAGGGAAAG
1 GGAAAAGGGAAAG
65877355 GG-AAAGGGAAAG
1 GGAAAAGGGAAAG
65877367 GGAAAAGGGAAAG
1 GGAAAAGGGAAAG
65877380 GG-AAAGGGAAAG
1 GGAAAAGGGAAAG
65877392 G
1 G
65877393 AAAGGAGAGA
Statistics
Matches: 48, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
11 3 0.06
12 31 0.65
13 14 0.29
ACGTcount: A:0.49, C:0.00, G:0.49, T:0.02
Consensus pattern (13 bp):
GGAAAAGGGAAAG
Found at i:65877351 original size:6 final size:6
Alignment explanation
Indices: 65877340--65877397 Score: 100
Period size: 6 Copynumber: 9.7 Consensus size: 6
65877330 GGAAAATGGG
65877340 AAGGGA AAGGGA AAGGGA AAGGGA AAGGGAA AAGGGA AAGGGA AAGGGA
1 AAGGGA AAGGGA AAGGGA AAGGGA AAGGG-A AAGGGA AAGGGA AAGGGA
65877389 AA-GGA AAGG
1 AAGGGA AAGG
65877398 AGAGATTGGA
Statistics
Matches: 50, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.10
6 39 0.78
7 6 0.12
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (6 bp):
AAGGGA
Found at i:65877373 original size:25 final size:24
Alignment explanation
Indices: 65877340--65877397 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 24
65877330 GGAAAATGGG
65877340 AAGGGAAAGGGAAAGGGAAAGGGA
1 AAGGGAAAGGGAAAGGGAAAGGGA
65877364 AAGGGAAAAGGGAAAGGGAAAGGGA
1 AAGGG-AAAGGGAAAGGGAAAGGGA
65877389 AA-GGAAAGG
1 AAGGGAAAGG
65877398 AGAGATTGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
23 5 0.15
24 7 0.21
25 21 0.64
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (24 bp):
AAGGGAAAGGGAAAGGGAAAGGGA
Found at i:65877417 original size:31 final size:31
Alignment explanation
Indices: 65877340--65877397 Score: 109
Period size: 31 Copynumber: 1.9 Consensus size: 31
65877330 GGAAAATGGG
65877340 AAGGGAAAGGGAAAGGGAAAGGGAAAGGGAA
1 AAGGGAAAGGGAAAGGGAAAGGGAAAGGGAA
65877371 AAGGGAAAGGGAAAGGGAAA-GGAAAGG
1 AAGGGAAAGGGAAAGGGAAAGGGAAAGG
65877398 AGAGATTGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 7 0.26
31 20 0.74
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (31 bp):
AAGGGAAAGGGAAAGGGAAAGGGAAAGGGAA
Found at i:65885486 original size:36 final size:37
Alignment explanation
Indices: 65885436--65885507 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 37
65885426 ATAAAGTTTC
*
65885436 GGATAACTGAGTATTGAAATTATTAT-TTCTTAGGAT
1 GGATAACTGAGTATTGAAATTAGTATATTCTTAGGAT
* *
65885472 GGATAACTTG-GTATTGTACTTAGTATATTCTTAGGA
1 GGATAAC-TGAGTATTGAAATTAGTATATTCTTAGGA
65885508 GGGCTTGTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 20 0.65
37 11 0.35
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.42
Consensus pattern (37 bp):
GGATAACTGAGTATTGAAATTAGTATATTCTTAGGAT
Found at i:65892101 original size:15 final size:15
Alignment explanation
Indices: 65892081--65892136 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
65892071 TAAAAATAAT
65892081 TGAAAA-AAATAACAA
1 TGAAAATAAATAA-AA
*
65892096 TGAAAATAGATAGAAA
1 TGAAAATAAATA-AAA
65892112 TG-AAATAAAATAAAA
1 TGAAAAT-AAATAAAA
65892127 T-AAAATAAAT
1 TGAAAATAAAT
65892137 CGATATGACG
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
14 4 0.11
15 18 0.51
16 12 0.34
17 1 0.03
ACGTcount: A:0.70, C:0.02, G:0.09, T:0.20
Consensus pattern (15 bp):
TGAAAATAAATAAAA
Found at i:65895412 original size:2 final size:2
Alignment explanation
Indices: 65895405--65895437 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
65895395 ATAATGTAAA
65895405 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
65895438 ACTAATAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:65895658 original size:24 final size:26
Alignment explanation
Indices: 65895629--65895691 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 26
65895619 ATATACGAAG
*
65895629 CAATTTAAAGTAGA-TAATATA-AA-A
1 CAATTTAAAATA-ATTAATATATAATA
65895653 CAATTTAAAATAATTAATATATAATA
1 CAATTTAAAATAATTAATATATAATA
*
65895679 TAATTTAAAATAA
1 CAATTTAAAATAA
65895692 AATAAAGCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 1 0.03
24 18 0.53
25 2 0.06
26 13 0.38
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (26 bp):
CAATTTAAAATAATTAATATATAATA
Found at i:65895976 original size:28 final size:28
Alignment explanation
Indices: 65895930--65896017 Score: 74
Period size: 28 Copynumber: 3.1 Consensus size: 28
65895920 AAAATAACAG
*
65895930 TATGTAAAGACTTAAAAAACAAATAATGTA
1 TATG-AAAGA-TTTAAAAACAAATAATGTA
* * *
65895960 TATGAAAGATTTAAAAATGACAGTAA-ATA
1 TATGAAAGATTTAAAAA-CA-AATAATGTA
*
65895989 TAT-AAAAATTT-AAAACAAATAATGTA
1 TATGAAAGATTTAAAAACAAATAATGTA
65896015 TAT
1 TAT
65896018 ATGTATAAAG
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
25 4 0.09
26 6 0.13
27 4 0.09
28 14 0.30
29 11 0.23
30 8 0.17
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (28 bp):
TATGAAAGATTTAAAAACAAATAATGTA
Found at i:65896729 original size:16 final size:16
Alignment explanation
Indices: 65896708--65896778 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
65896698 GTTTGGTTCA
*
65896708 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
65896724 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
*
65896740 CTGTAATGGAATAGAT
1 CTGTAATGGAATAGAG
*
65896756 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
65896772 CTGTAAT
1 CTGTAAT
65896779 AAGTAATTCA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.37, C:0.07, G:0.27, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:65896817 original size:46 final size:44
Alignment explanation
Indices: 65896760--65896853 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
65896750 ATAGATCTGT
65896760 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTGTTTGGTTGAATGG
***
65896806 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
65896850 AATG
1 AATG
65896854 ATGTTGTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 23 0.51
45 3 0.07
46 19 0.42
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
Found at i:65897047 original size:17 final size:17
Alignment explanation
Indices: 65897025--65897057 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
65897015 AATTATTATT
65897025 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
65897042 AAATATAATTTAATAA
1 AAATATAATTTAATAA
65897058 CATTCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:65897583 original size:18 final size:18
Alignment explanation
Indices: 65897560--65897594 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
65897550 ACGTGGTAGT
*
65897560 CCAACTAGATTTTAAGTG
1 CCAACTAGATCTTAAGTG
65897578 CCAACTAGATCTTAAGT
1 CCAACTAGATCTTAAGT
65897595 ATATCTGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (18 bp):
CCAACTAGATCTTAAGTG
Found at i:65897653 original size:40 final size:40
Alignment explanation
Indices: 65897602--65897846 Score: 391
Period size: 40 Copynumber: 6.1 Consensus size: 40
65897592 AGTATATCTG
* * * *
65897602 TTAATACATACTTTATCAGGGTAAATTATACAATTTTCTG
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
65897642 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
* * *
65897682 TTAATACATACTTTATCCGGATAAATTATACAGTTTTCTG
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
65897722 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
65897762 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
* * * *
65897802 TTAATATATACTTCATCCGGATAAATTATACAGTTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
65897842 TTAAT
1 TTAAT
65897847 GTGCTTGTGA
Statistics
Matches: 191, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 191 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (40 bp):
TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
Found at i:65897813 original size:120 final size:120
Alignment explanation
Indices: 65897598--65897846 Score: 435
Period size: 120 Copynumber: 2.1 Consensus size: 120
65897588 CTTAAGTATA
* *
65897598 TCTGTTAATACATACTTTATCAGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGG
1 TCTGTTAATACATACTTTACCAGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
*
65897663 TAAATTATACAGTTTTCTATTAATACATACTTTATCCGGATAAATTATACAGTTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
* *
65897718 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTATTAATACATACTTTACCCGGG
1 TCTGTTAATACATACTTTACCAGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
*
65897783 TAAATTATACAGTTTTCTATTAATATATACTTCATCCGGATAAATTATACAGTTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
*
65897838 TCTATTAAT
1 TCTGTTAAT
65897847 GTGCTTGTGA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 122 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.42
Consensus pattern (120 bp):
TCTGTTAATACATACTTTACCAGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAGTTT
Found at i:65901686 original size:21 final size:22
Alignment explanation
Indices: 65901653--65901695 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
65901643 TTTTAACTTG
65901653 AGAAATCAATTTTTG-ATATAAA
1 AGAAATC-ATTTTTGCATATAAA
65901675 AGAAAT-ATTTTTGCATATAAA
1 AGAAATCATTTTTGCATATAAA
65901696 TTTCTAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 7 0.35
22 6 0.30
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.37
Consensus pattern (22 bp):
AGAAATCATTTTTGCATATAAA
Found at i:65903435 original size:9 final size:9
Alignment explanation
Indices: 65903423--65903454 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
65903413 ACAAATATTA
65903423 AAAATAAAC
1 AAAATAAAC
65903432 AAAATAAAC
1 AAAATAAAC
65903441 AAAATAAAC
1 AAAATAAAC
65903450 AAAAT
1 AAAAT
65903455 GCACCAAGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAATAAAC
Found at i:65923905 original size:11 final size:11
Alignment explanation
Indices: 65923891--65923935 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
65923881 AGATAAATAT
65923891 TATTTTATTAA
1 TATTTTATTAA
*
65923902 TATTTTAATAAGA
1 TATTTT-ATTA-A
*
65923915 TATTTTATTAT
1 TATTTTATTAA
65923926 TATTTTATTA
1 TATTTTATTA
65923936 GTATATAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:65926131 original size:46 final size:46
Alignment explanation
Indices: 65926064--65926373 Score: 469
Period size: 46 Copynumber: 6.7 Consensus size: 46
65926054 AGTGTGCTCT
*
65926064 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCACGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
65926110 CTGATATTAAATGTGTAAGACCATGGTTGAAAGATACCATGACAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
65926156 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
65926202 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
65926248 CTGATATGAGATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * ** *
65926294 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
65926340 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
65926374 CACTATGACA
Statistics
Matches: 244, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
45 1 0.00
46 243 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:65932904 original size:28 final size:27
Alignment explanation
Indices: 65932841--65932905 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
65932831 TCATAACTTA
*
65932841 TTTATAAAAAAAATTACTTTCTAAAGT
1 TTTATAAAAAAAATTACTTTATAAAGT
**
65932868 TATGGTAAAAAAAATTA-TTTATAAGAAGT
1 T-TTATAAAAAAAATTACTTTAT-A-AAGT
65932897 TTTATAAAA
1 TTTATAAAA
65932906 TGCTTGGATA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
27 5 0.17
28 20 0.67
29 5 0.17
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (27 bp):
TTTATAAAAAAAATTACTTTATAAAGT
Found at i:65936544 original size:20 final size:20
Alignment explanation
Indices: 65936519--65936560 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
65936509 GACTAAATTG
*
65936519 AAAAATTGTAAAATTCATGA
1 AAAAATTCTAAAATTCATGA
* *
65936539 AAAAATTCTAAATTTTATGA
1 AAAAATTCTAAAATTCATGA
65936559 AA
1 AA
65936561 TACATGGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.33
Consensus pattern (20 bp):
AAAAATTCTAAAATTCATGA
Found at i:65937284 original size:23 final size:23
Alignment explanation
Indices: 65937257--65937304 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
65937247 TTTCTGATTA
*
65937257 ATGGCTC-TCTGGAACTTTCCGAT
1 ATGGCTCGT-TGGAACTTCCCGAT
*
65937280 ATGGCTCGTTTGAACTTCCCGAT
1 ATGGCTCGTTGGAACTTCCCGAT
65937303 AT
1 AT
65937305 ATATGGCTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 21 0.95
24 1 0.05
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (23 bp):
ATGGCTCGTTGGAACTTCCCGAT
Found at i:65937344 original size:25 final size:24
Alignment explanation
Indices: 65937217--65937347 Score: 63
Period size: 25 Copynumber: 5.2 Consensus size: 24
65937207 CAGCTCTTAT
* * *
65937217 GAGCGTTCCGATTAAAGGTTCTTTG
1 GAGC-TTCCGATTAATGGCTCTTCG
*
65937242 TGAGCTTTCTGATTAATGGCTC-TCTG
1 -GAGC-TTCCGATTAATGGCTCTTC-G
* *
65937268 GAACTTTCCGA-T-ATGGCTCGTT-T
1 GAGC-TTCCGATTAATGGCTC-TTCG
* * *
65937291 GAACTTCCCGATATATATGGCTATCCG
1 GAGCTT-CCGAT-TA-ATGGCTCTTCG
65937318 GAGCTTCCTGATTAATGGCTCTTCG
1 GAGCTTCC-GATTAATGGCTCTTCG
65937343 GAGCT
1 GAGCT
65937348 ACTCGTTATT
Statistics
Matches: 81, Mismatches: 14, Indels: 21
0.70 0.12 0.18
Matches are distributed among these distances:
22 2 0.02
23 15 0.19
24 1 0.01
25 26 0.32
26 23 0.28
27 14 0.17
ACGTcount: A:0.19, C:0.21, G:0.24, T:0.36
Consensus pattern (24 bp):
GAGCTTCCGATTAATGGCTCTTCG
Found at i:65937460 original size:25 final size:24
Alignment explanation
Indices: 65937351--65937461 Score: 66
Period size: 25 Copynumber: 4.5 Consensus size: 24
65937341 CGGAGCTACT
**
65937351 CGTTAT-TGGCTCGCATGAGCTTC
1 CGTTATATGGCTCATATGAGCTTC
* * *
65937374 C-TAATTATGGCTCCTATAAGCTTC
1 CGTTA-TATGGCTCATATGAGCTTC
* * *
65937398 CGTTTATATAGCCTGAAAT-AGCTTCC
1 CG-TTATAT-GGCTCATATGAGCTT-C
* *
65937424 CGTTACAAGGCTCATATGAGCTTC
1 CGTTATATGGCTCATATGAGCTTC
65937448 TCGTTATATGGCTC
1 -CGTTATATGGCTC
65937462 GAAAGAGAAA
Statistics
Matches: 64, Mismatches: 16, Indels: 14
0.68 0.17 0.15
Matches are distributed among these distances:
22 2 0.03
23 2 0.03
24 22 0.34
25 28 0.44
26 10 0.16
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (24 bp):
CGTTATATGGCTCATATGAGCTTC
Found at i:65941061 original size:19 final size:18
Alignment explanation
Indices: 65941037--65941090 Score: 72
Period size: 19 Copynumber: 2.8 Consensus size: 18
65941027 CTTCCAAGAT
65941037 CCACACGGCCTGGCCATTC
1 CCACACGG-CTGGCCATTC
*
65941056 CCACACAGGTTGGCCATTC
1 CCACAC-GGCTGGCCATTC
65941075 CCACACGGGCTGGCCA
1 CCACAC-GGCTGGCCA
65941091 CACACTCATG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 29 0.94
20 2 0.06
ACGTcount: A:0.19, C:0.43, G:0.24, T:0.15
Consensus pattern (18 bp):
CCACACGGCTGGCCATTC
Found at i:65947359 original size:20 final size:21
Alignment explanation
Indices: 65947321--65947360 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65947311 GATATTATAT
65947321 TTTTATAATTGAATAGAAAAG
1 TTTTATAATTGAATAGAAAAG
*
65947342 TTTTATAATT-ATTAGAAAA
1 TTTTATAATTGAATAGAAAA
65947361 CCATAATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.42
Consensus pattern (21 bp):
TTTTATAATTGAATAGAAAAG
Found at i:65948856 original size:31 final size:31
Alignment explanation
Indices: 65948819--65948880 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
65948809 AGTAGAGGGA
65948819 TGGTGGGGATGATGGAGTCTAGAGGGGGAGC
1 TGGTGGGGATGATGGAGTCTAGAGGGGGAGC
65948850 TGGTGGGGATGATGGAGTCTAGAGGGGGAGC
1 TGGTGGGGATGATGGAGTCTAGAGGGGGAGC
65948881 CCCCTATTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.06, G:0.55, T:0.19
Consensus pattern (31 bp):
TGGTGGGGATGATGGAGTCTAGAGGGGGAGC
Found at i:65951897 original size:18 final size:18
Alignment explanation
Indices: 65951874--65951928 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
65951864 CGAATAAAAC
*
65951874 TTGAGAAAATTGAGAGAG
1 TTGAGAGAATTGAGAGAG
65951892 TTGAGAGAATT-A-AGAG
1 TTGAGAGAATTGAGAGAG
65951908 TTTAGAGAGAATTGAGAGAG
1 -TT-GAGAGAATTGAGAGAG
65951928 T
1 T
65951929 AAAATTTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
16 4 0.12
17 3 0.09
18 19 0.59
19 2 0.06
20 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (18 bp):
TTGAGAGAATTGAGAGAG
Found at i:65951907 original size:9 final size:9
Alignment explanation
Indices: 65951874--65951926 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
65951864 CGAATAAAAC
*
65951874 TTGAGAAAA
1 TTGAGAGAA
*
65951883 TTGAGAGAG
1 TTGAGAGAA
65951892 TTGAGAGAA
1 TTGAGAGAA
* *
65951901 TTAAGAG-T
1 TTGAGAGAA
65951909 TTAGAGAGAA
1 TT-GAGAGAA
65951919 TTGAGAGA
1 TTGAGAGA
65951927 GTAAAATTTG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
8 2 0.06
9 31 0.89
10 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (9 bp):
TTGAGAGAA
Found at i:65952841 original size:21 final size:21
Alignment explanation
Indices: 65952817--65952858 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
65952807 AGGACTAAAG
65952817 TAAACAAAAAAGTTTAAATAC
1 TAAACAAAAAAGTTTAAATAC
65952838 TAAACAAAAAAGTTTAAATAC
1 TAAACAAAAAAGTTTAAATAC
65952859 CAAAATAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.10, G:0.05, T:0.24
Consensus pattern (21 bp):
TAAACAAAAAAGTTTAAATAC
Found at i:65953158 original size:25 final size:25
Alignment explanation
Indices: 65953130--65953178 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
65953120 TATTATTTTT
65953130 AATTTAATAT-TTAATAATTTTATAC
1 AATTTAATATATTAA-AATTTTATAC
* *
65953155 AATTTTATTTATTAAAATTTTATA
1 AATTTAATATATTAAAATTTTATA
65953179 TATAGTCACC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 17 0.81
26 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
AATTTAATATATTAAAATTTTATAC
Found at i:65954425 original size:18 final size:18
Alignment explanation
Indices: 65954402--65954440 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
65954392 TTTTTTATAT
65954402 TTTTAGCATTTCTTTTAA
1 TTTTAGCATTTCTTTTAA
* * *
65954420 TTTTAGGATTTTTTTTTA
1 TTTTAGCATTTCTTTTAA
65954438 TTT
1 TTT
65954441 CAAAGGGTAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.18, C:0.05, G:0.08, T:0.69
Consensus pattern (18 bp):
TTTTAGCATTTCTTTTAA
Found at i:65954436 original size:19 final size:19
Alignment explanation
Indices: 65954389--65954437 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
65954379 TTTGTATCTT
*
65954389 ATTTTTTTTATATTTTTAGC
1 ATTTTTTTT-TAATTTTAGC
* *
65954409 A-TTTCTTTTAATTTTAGG
1 ATTTTTTTTTAATTTTAGC
65954427 ATTTTTTTTTA
1 ATTTTTTTTTA
65954438 TTTCAAAGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 9 0.38
19 14 0.58
20 1 0.04
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.69
Consensus pattern (19 bp):
ATTTTTTTTTAATTTTAGC
Found at i:65956116 original size:18 final size:18
Alignment explanation
Indices: 65956089--65956140 Score: 68
Period size: 18 Copynumber: 2.8 Consensus size: 18
65956079 AAAAATTAAT
65956089 TTAAATTTAATATGCACAA
1 TTAAA-TTAATATGCACAA
*
65956108 TTAAATTAATATGTACAA
1 TTAAATTAATATGCACAA
**
65956126 TTATTTTAATATGCA
1 TTAAATTAATATGCA
65956141 TGTTATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 24 0.83
19 5 0.17
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAAATTAATATGCACAA
Found at i:65956329 original size:26 final size:25
Alignment explanation
Indices: 65956299--65956348 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
65956289 ACATTGTTTC
* *
65956299 TAAATTTAAAATTTTTAAATCTATT
1 TAAAATTAAAATTTTTAAATATATT
65956324 TAAAATTAAAATTTTTAAATATATT
1 TAAAATTAAAATTTTTAAATATATT
65956349 ATATGTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
TAAAATTAAAATTTTTAAATATATT
Found at i:65966566 original size:15 final size:16
Alignment explanation
Indices: 65966528--65966575 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
65966518 TAGCCCCCCT
*
65966528 CTCTCCTTTCCCCTCTC
1 CTCTCCTTT-CTCTCTC
65966545 C-CTCCTTTCTCT-TC
1 CTCTCCTTTCTCTCTC
65966559 CTCTCCTTTCTTCTCTC
1 CTCTCCTTTC-TCTCTC
65966576 TTTTTTTTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 3 0.11
15 11 0.41
16 10 0.37
17 3 0.11
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (16 bp):
CTCTCCTTTCTCTCTC
Done.