Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 208 of 259
Found at i:65981055 original size:22 final size:20
Alignment explanation
Indices: 65981004--65981057 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 20
65980994 ATATATTTGG
65981004 TAATA-ATA-ATATAAAATAA
1 TAATATATACATA-AAAATAA
*
65981023 TAATATGTACATAAAAATACA
1 TAATATATACATAAAAATA-A
65981044 TATATATATACATA
1 TA-ATATATACATA
65981058 TAATAAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
19 5 0.17
20 8 0.28
21 6 0.21
22 10 0.34
ACGTcount: A:0.59, C:0.06, G:0.02, T:0.33
Consensus pattern (20 bp):
TAATATATACATAAAAATAA
Found at i:65981067 original size:21 final size:21
Alignment explanation
Indices: 65981012--65981069 Score: 55
Period size: 21 Copynumber: 2.7 Consensus size: 21
65981002 GGTAATAATA
* *
65981012 ATATAAAATAATA-ATATGTAC
1 ATATAATA-AATATATATATAC
* *
65981033 ATAAAAATACATATATATATAC
1 AT-ATAATAAATATATATATAC
65981055 ATATAATAAATATAT
1 ATATAATAAATATAT
65981070 GTAATAATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
21 16 0.55
22 13 0.45
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (21 bp):
ATATAATAAATATATATATAC
Found at i:65981177 original size:17 final size:17
Alignment explanation
Indices: 65981155--65981215 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
65981145 ACAATAATAT
65981155 AAAATA-ATGATATGTAC
1 AAAATATAT-ATATGTAC
65981172 AAAATATATATATGTAC
1 AAAATATATATATGTAC
*
65981189 ATAATATAGT-TA--TA-
1 AAAATATA-TATATGTAC
65981203 AAAATATATATAT
1 AAAATATATATAT
65981216 TAAATTCAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 2 0.05
17 23 0.61
18 3 0.08
ACGTcount: A:0.54, C:0.03, G:0.07, T:0.36
Consensus pattern (17 bp):
AAAATATATATATGTAC
Found at i:65981998 original size:16 final size:15
Alignment explanation
Indices: 65981977--65982014 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
65981967 TTTTTGTTGT
65981977 TTTTTTTGCTGGAAAA
1 TTTTTTTGCT-GAAAA
65981993 TTTTTTTGCTGAAAA
1 TTTTTTTGCTGAAAA
65982008 TTTTTTT
1 TTTTTTT
65982015 TTGCTCTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.61
Consensus pattern (15 bp):
TTTTTTTGCTGAAAA
Found at i:65982019 original size:17 final size:17
Alignment explanation
Indices: 65981976--65982015 Score: 66
Period size: 16 Copynumber: 2.5 Consensus size: 17
65981966 TTTTTTGTTG
65981976 TTTTTTTTGCTGGAAAA
1 TTTTTTTTGCTGGAAAA
65981993 -TTTTTTTGCT-GAAAA
1 TTTTTTTTGCTGGAAAA
65982008 TTTTTTTT
1 TTTTTTTT
65982016 TGCTCTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.20, C:0.05, G:0.12, T:0.62
Consensus pattern (17 bp):
TTTTTTTTGCTGGAAAA
Found at i:65982266 original size:29 final size:31
Alignment explanation
Indices: 65982228--65982360 Score: 100
Period size: 30 Copynumber: 4.5 Consensus size: 31
65982218 TTCTAGGGCT
65982228 AAATGTAATTTTTA-GAAAATTTA-GGGTTA
1 AAATGTAATTTTTAGGAAAATTTAGGGGTTA
* * *
65982257 AAATGCAA-TTTAAGGAAAGTTTAGGGGTCT-
1 AAATGTAATTTTTAGGAAAATTTAGGGGT-TA
* * * * * *
65982287 AAGTG-AAATTTAAAGAAAGTTTAAGGGTTA
1 AAATGTAATTTTTAGGAAAATTTAGGGGTTA
* *
65982317 AAATG-AA-ATTTAGGAAAAGTTTAGGGGTCA
1 AAATGTAATTTTTAGGAAAA-TTTAGGGGTTA
65982347 AAATGTAATTTTTA
1 AAATGTAATTTTTA
65982361 TTTTTTAAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
28 4 0.05
29 25 0.30
30 46 0.56
31 3 0.04
32 4 0.05
ACGTcount: A:0.42, C:0.02, G:0.22, T:0.34
Consensus pattern (31 bp):
AAATGTAATTTTTAGGAAAATTTAGGGGTTA
Found at i:65982299 original size:30 final size:31
Alignment explanation
Indices: 65982242--65982357 Score: 127
Period size: 30 Copynumber: 3.9 Consensus size: 31
65982232 GTAATTTTTA
* *
65982242 GAAAATTTA-GGGT-TAAAATGCAATTTAAG
1 GAAAGTTTAGGGGTCTAAAATGAAATTTAAG
* *
65982271 GAAAGTTTAGGGGTCT-AAGTGAAATTTAAA
1 GAAAGTTTAGGGGTCTAAAATGAAATTTAAG
*
65982301 GAAAGTTTAAGGGT-TAAAATGAAATTT-AG
1 GAAAGTTTAGGGGTCTAAAATGAAATTTAAG
*
65982330 GAAAAGTTTAGGGGTC-AAAATGTAATTT
1 G-AAAGTTTAGGGGTCTAAAATGAAATTT
65982358 TTATTTTTTA
Statistics
Matches: 73, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
29 11 0.15
30 61 0.84
31 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.24, T:0.31
Consensus pattern (31 bp):
GAAAGTTTAGGGGTCTAAAATGAAATTTAAG
Found at i:65982357 original size:60 final size:59
Alignment explanation
Indices: 65982228--65982357 Score: 172
Period size: 60 Copynumber: 2.2 Consensus size: 59
65982218 TTCTAGGGCT
** * *
65982228 AAATGTAATTTTTAGAAAATTTAGGGTTAAAATGCAATTTAAGGAAAGTTTAGGGGTCT
1 AAATGTAATTTAAAGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAGGGGTCA
* * *
65982287 AAGTGAAATTTAAAGAAAGTTTAAGGGTTAAAATGAAATTT-AGGAAAAGTTTAGGGGTCA
1 AAATGTAATTTAAAGAAAATTT-AGGGTTAAAATGAAATTTAAGG-AAAGTTTAGGGGTCA
65982347 AAATGTAATTT
1 AAATGTAATTT
65982358 TTATTTTTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
59 20 0.33
60 40 0.67
ACGTcount: A:0.42, C:0.02, G:0.22, T:0.33
Consensus pattern (59 bp):
AAATGTAATTTAAAGAAAATTTAGGGTTAAAATGAAATTTAAGGAAAGTTTAGGGGTCA
Found at i:65982386 original size:24 final size:23
Alignment explanation
Indices: 65982354--65982399 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
65982344 TCAAAATGTA
65982354 ATTTTTATTTTTTAAAAAATTTTT
1 ATTTTTATTTTTT-AAAAATTTTT
*
65982378 ATTTTTATTTTTTTAAAATTTT
1 ATTTTTATTTTTTAAAAATTTT
65982400 GAAAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
ATTTTTATTTTTTAAAAATTTTT
Found at i:65983219 original size:19 final size:19
Alignment explanation
Indices: 65983197--65983253 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
65983187 ATTCCTAATA
*
65983197 TATATTGTATATGTTTATT
1 TATATTGTATATATTTATT
*
65983216 TATATTATGTATATATATATT
1 TATA-T-TGTATATATTTATT
65983237 TAGTA-TGTATATATTTA
1 TA-TATTGTATATATTTA
65983254 GTATTATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 15 0.47
20 1 0.03
21 14 0.44
22 2 0.06
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (19 bp):
TATATTGTATATATTTATT
Found at i:65983252 original size:15 final size:15
Alignment explanation
Indices: 65983224--65983257 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
65983214 TTTATATTAT
65983224 GTATATATATATTTA
1 GTATATATATATTTA
*
65983239 GTATGTATATATTTA
1 GTATATATATATTTA
65983254 GTAT
1 GTAT
65983258 TATTATGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
GTATATATATATTTA
Found at i:65983264 original size:21 final size:19
Alignment explanation
Indices: 65983202--65983273 Score: 72
Period size: 21 Copynumber: 3.6 Consensus size: 19
65983192 TAATATATAT
*
65983202 TGTATATGTTTATTTATATTA
1 TGTATATATTTA-TT-TATTA
* *
65983223 TGTATATATATATTTAGTA
1 TGTATATATTTATTTATTA
65983242 TGTATATATTTAGTATTATTA
1 TGTATATATTTA-T-TTATTA
*
65983263 TGTCTATATTT
1 TGTATATATTT
65983274 TTCATTCCTA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
19 15 0.35
20 3 0.07
21 25 0.58
ACGTcount: A:0.31, C:0.01, G:0.10, T:0.58
Consensus pattern (19 bp):
TGTATATATTTATTTATTA
Found at i:65983588 original size:14 final size:15
Alignment explanation
Indices: 65983569--65983597 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65983559 GTTATAAATA
65983569 GTTATT-TTTTTAAT
1 GTTATTATTTTTAAT
65983583 GTTATTATTTTTAAT
1 GTTATTATTTTTAAT
65983598 ATGTATAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (15 bp):
GTTATTATTTTTAAT
Found at i:65985979 original size:26 final size:26
Alignment explanation
Indices: 65985931--65985981 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
65985921 CAGAGGTCTA
*
65985931 TTGAGTTTAAGTGGGTCTAAGAACCC
1 TTGAGTTTAAGTGGGTCGAAGAACCC
* * *
65985957 TTGAGTTTGAGTTGGTCGGAGAACC
1 TTGAGTTTAAGTGGGTCGAAGAACC
65985982 ATGAGCAGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.31, T:0.31
Consensus pattern (26 bp):
TTGAGTTTAAGTGGGTCGAAGAACCC
Found at i:65990903 original size:17 final size:17
Alignment explanation
Indices: 65990881--65990915 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
65990871 AACATTCAAG
65990881 TTAATGATATAATTTTA
1 TTAATGATATAATTTTA
65990898 TTAATGATATAATTTTA
1 TTAATGATATAATTTTA
65990915 T
1 T
65990916 CTTTATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
TTAATGATATAATTTTA
Found at i:65991115 original size:16 final size:16
Alignment explanation
Indices: 65991082--65991115 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
65991072 ACATATTGTT
* *
65991082 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
65991098 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
65991114 AA
1 AA
65991116 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:65993940 original size:21 final size:21
Alignment explanation
Indices: 65993914--65993954 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
65993904 AGACGAGCAA
* *
65993914 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
65993935 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
65993955 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:65995892 original size:16 final size:16
Alignment explanation
Indices: 65995859--65995892 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
65995849 GGAGATTGTT
* *
65995859 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
65995875 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
65995891 AA
1 AA
65995893 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:65998400 original size:16 final size:16
Alignment explanation
Indices: 65998375--65998413 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
65998365 TTAAAAAACC
*
65998375 AAAAATAAAACAGAAAT
1 AAAAA-AAAACACAAAT
65998392 AAAAAAAAACACAAAT
1 AAAAAAAAACACAAAT
65998408 AAAAAA
1 AAAAAA
65998414 CCCAAAATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.82, C:0.08, G:0.03, T:0.08
Consensus pattern (16 bp):
AAAAAAAAACACAAAT
Found at i:66001713 original size:15 final size:16
Alignment explanation
Indices: 66001691--66001733 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
66001681 GAGAAAAAAG
*
66001691 AGCAAAAAAAAATTCC
1 AGCAAAAAAAATTTCC
66001707 AGCAAAAAAAATTTCC
1 AGCAAAAAAAATTTCC
66001723 AGCAAAAAAAA
1 AGCAAAAAAAA
66001734 CCAAAAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.65, C:0.16, G:0.07, T:0.12
Consensus pattern (16 bp):
AGCAAAAAAAATTTCC
Found at i:66002306 original size:15 final size:16
Alignment explanation
Indices: 66002273--66002306 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
66002263 TTTTATTTGT
66002273 AATTGGTCTAAACAAA
1 AATTGGTCTAAACAAA
*
66002289 AATTGGTCTTAA-AAA
1 AATTGGTCTAAACAAA
66002304 AAT
1 AAT
66002307 AATAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (16 bp):
AATTGGTCTAAACAAA
Found at i:66002314 original size:11 final size:11
Alignment explanation
Indices: 66002298--66002327 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
66002288 AAATTGGTCT
66002298 TAAAAAAATAA
1 TAAAAAAATAA
66002309 TAAAAAAATAA
1 TAAAAAAATAA
66002320 TAAAAAAA
1 TAAAAAAA
66002328 ATATTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (11 bp):
TAAAAAAATAA
Found at i:66002314 original size:12 final size:12
Alignment explanation
Indices: 66002299--66002335 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
66002289 AATTGGTCTT
66002299 AAAAAAATAAT-
1 AAAAAAATAATA
66002310 AAAAAAATAATA
1 AAAAAAATAATA
*
66002322 AAAAAAATATTA
1 AAAAAAATAATA
66002334 AA
1 AA
66002336 TTTTAAAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 11 0.46
12 13 0.54
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAAAAATAATA
Found at i:66002572 original size:17 final size:17
Alignment explanation
Indices: 66002513--66002574 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 17
66002503 TTCGAATTTA
*
66002513 ATATATATATTTT-T-T
1 ATATATATATTTTGTAC
* *
66002528 ATA-ACTATATTATATAC
1 ATATA-TATATTTTGTAC
66002545 ATATATATATTTTGTAC
1 ATATATATATTTTGTAC
66002562 ATATCAT-TATTTT
1 ATAT-ATATATTTT
66002575 ATATTATTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
14 1 0.03
15 10 0.26
16 1 0.03
17 23 0.61
18 3 0.08
ACGTcount: A:0.37, C:0.06, G:0.02, T:0.55
Consensus pattern (17 bp):
ATATATATATTTTGTAC
Found at i:66002713 original size:3 final size:3
Alignment explanation
Indices: 66002705--66002730 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
66002695 TTTATGTACA
66002705 TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TA
66002731 CAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:66002714 original size:19 final size:19
Alignment explanation
Indices: 66002636--66002719 Score: 68
Period size: 19 Copynumber: 4.3 Consensus size: 19
66002626 TAATATTTTC
*
66002636 TTTTATTGTAGATATTATTA
1 TTTTA-TGTACATATTATTA
66002656 TTATTAT-TACATACTT-TTA
1 TT-TTATGTACATA-TTATTA
*
66002675 TTATATG--CATATATATGTA
1 TTTTATGTACATAT-TAT-TA
66002694 TTTTATGTACATATTATTA
1 TTTTATGTACATATTATTA
66002713 TTATTAT
1 TT-TTAT
66002720 TATTATTATT
Statistics
Matches: 52, Mismatches: 3, Indels: 18
0.71 0.04 0.25
Matches are distributed among these distances:
16 1 0.02
17 5 0.10
18 4 0.08
19 22 0.42
20 12 0.23
21 8 0.15
ACGTcount: A:0.32, C:0.05, G:0.06, T:0.57
Consensus pattern (19 bp):
TTTTATGTACATATTATTA
Found at i:66012382 original size:72 final size:73
Alignment explanation
Indices: 66012265--66013016 Score: 911
Period size: 72 Copynumber: 10.1 Consensus size: 73
66012255 TGATGCTTTT
*
66012265 ATTTCTG-TTTCAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
66012329 TAATTTCA
66 TATTTTCA
* * *
66012337 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATAAGTTGAGCCTCAAGACACATTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
66012401 TATTTTCA
66 TATTTTCA
* * **
66012409 ATATCTACTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 ATTTCT-GTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
66012474 GTATTTTCA
65 GTATTTTCA
* *
66012483 ATTTCTGTTCAATTTATGTTTTTCAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAG
1 ATTTCTGTT---TTCA--------AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
*
66012548 ACACATTGAGGTATTTTCA
55 ACACGTTGAGGTATTTTCA
* * * *
66012567 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGTTAAAG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
66012631 TATTTTCA
66 TATTTTCA
* *
66012639 ATTTCTGTTTTC-AAAATTCAACTGATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
66012703 TAATTTCA
66 TATTTTCA
* * *
66012711 ATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
66012775 TATTTTCA
66 TATTTTCA
* * *
66012783 ATTTCTGTTTTTCAAAAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACATGCTG
1 ATTTCTG-TTTTC--AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTG
66012848 AGGTATTTTCA
63 AGGTATTTTCA
* * ** * *
66012859 ATTTTTATCTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 ATTTCTGT-TTTC---AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTT
*
66012924 GAGGTAATTTCA
62 GAGGTATTTTCA
* * *** * **
66012936 ATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCG
1 ATTTCTGTTTTC-AAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG--ACACGTTG
66013001 AGGTATTTTCA
63 AGGTATTTTCA
66013012 ATTTC
1 ATTTC
66013017 CATTTTTTAA
Statistics
Matches: 608, Mismatches: 50, Indels: 40
0.87 0.07 0.06
Matches are distributed among these distances:
72 265 0.44
73 16 0.03
74 101 0.17
75 1 0.00
76 95 0.16
77 63 0.10
81 2 0.00
84 65 0.11
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (73 bp):
ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TATTTTCA
Found at i:66012547 original size:84 final size:85
Alignment explanation
Indices: 66012417--66012575 Score: 275
Period size: 84 Copynumber: 1.9 Consensus size: 85
66012407 CAATATCTAC
* ** *
66012417 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
1 TTTTCAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
66012482 AATTTCTGTTCAATTTATGT
66 AATTTCTGTTCAATTTATGT
66012502 TTTTC-AAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
1 TTTTCAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
66012566 AATTTCTGTT
66 AATTTCTGTT
66012576 TTCAAAATTC
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
84 65 0.93
85 5 0.07
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (85 bp):
TTTTCAAAAAATCAACTCATATTGCAAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTC
AATTTCTGTTCAATTTATGT
Found at i:66013175 original size:169 final size:167
Alignment explanation
Indices: 66012867--66013178 Score: 441
Period size: 169 Copynumber: 1.9 Consensus size: 167
66012857 CAATTTTTAT
*
66012867 CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAAT
1 CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAAT
* * *
66012932 TTCAATTTCTGTTGTCAAAAAAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACAC
66 TTCAATTTCTGTTGTCAAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGATCACAC
*
66012997 GCCGAGGTATTTTCAATTTCCATTTTTTAATTTCTGC
131 ACCGAGGTATTTTCAATTTCCATTTTTTAATTTCTGC
* * *
66013034 CTTTC-AAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCT
1 CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGCT
* * *
66013097 ATTTTCAATTTCTGCCTT-TCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGAT
63 AATTTCAATTTCTG--TTGTCAAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGAT
* *
66013161 TACACACTGAGGTATTTT
126 CACACACCGAGGTATTTT
66013179 TTCAATTTAT
Statistics
Matches: 127, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
165 2 0.02
166 39 0.31
167 5 0.04
168 23 0.18
169 56 0.44
170 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (167 bp):
CTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGCTAAT
TTCAATTTCTGTTGTCAAAAAAATCAACTCATATTACGAGAGGCGAGTTGAGCCTCAGATCACAC
ACCGAGGTATTTTCAATTTCCATTTTTTAATTTCTGC
Found at i:66013252 original size:79 final size:78
Alignment explanation
Indices: 66013035--66014098 Score: 561
Period size: 79 Copynumber: 13.1 Consensus size: 78
66013025 AATTTCTGCC
* * * * * *
66013035 TTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTA-T
1 TTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
* **
66013099 TTTCAATTTCTGCC
65 TTTCAATTTATGTT
* * * * * * *
66013113 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCTTCAGATTACACACTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA-TT
*
66013178 TTTCAATTTATATT
65 TTTCAATTTATGTT
* * * *
66013192 TTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTT
* *
66013257 TCAAAATCTATTTTCAATTTCT
66 T-----TC-AATTT--ATGT-T
* * * *
66013279 GTTCATCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTA
1 -TT--TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA
66013344 -TTTTCAATTTATGTT
63 TTTTTCAATTTATGTT
** * * ** * *
66013359 CGTC--AAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTCTCGGGCCACATACCAAGGT-CT
1 TTTCAAAAAAATCAACTCATATTG-CGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
* *
66013420 TTTCAAATTCTGTTTTT
65 TTTC-AATT-T-ATGTT
* * * * * * *
66013437 AATTTCTATTTTTCAAAAAA-AAAATCA-ACT-C-ATATTGTGAGAGGTGAGTTGAGCCTTGGCT
1 --TTTC-A------AAAAAATCAACTCATATTGCGAGA--G-G-T----GAGTTGAGCCTCGGGT
* *
66013498 CACACGCTGAGGTA-TTTTCAATTTCTGTT
49 CACACGCCGAGGTATTTTTCAATTTATGTT
** * * * * * *
66013527 CGTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCGAGCCACATGCCGAAGTCTTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCG-AG----G
* * *
66013590 TCAAATTCTATTTTTAATTTCTATT
61 T---A---T-TTTTCAATTTATGTT
* *
66013615 TTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
1 TTTCAA-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATT
*
66013680 TTTCAATTTCTGTTTTT
65 TTTCAATTTATG---TT
** * * * * *
66013697 TTTTTAAAAAATTAACTCATATTACGAGAGATGAGTTGAGGCTCGGGTCACGCGCCGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTT
* * *
66013762 TTTAATTTCTATT
66 TTCAATTTATGTT
*** * * *
66013775 TTTCAAAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTA-
1 TTTC-AAAAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT
*
66013838 TTTTCAATTTCTGTT
64 TTTTCAATTTATGTT
* * *
66013853 TTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCGGGTCACACACCGAGGTA
1 TTTC---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTA
*
66013918 TTTTTCAATTTCTGTT
63 TTTTTCAATTTATGTT
* * *
66013934 TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTA-
1 TTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTAT
*
66013998 TTTTCAATTTTTTTGGCTT
64 TTTTCAA--TTTAT-G-TT
* * * * *
66014017 TTT--TAAAAATCAACTCATAATT-CGAGAGGTGAGTTAAACTTCGGGT-AGCATC-CCGAGCTA
1 TTTCAAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTGAGCCTCGGGTCA-CA-CGCCGAGGTA
*
66014077 -TTTTCAATTTCTTGTT
63 TTTTTCAATTT-ATGTT
66014093 TTTCAA
1 TTTCAA
66014099 TAAAGAATAA
Statistics
Matches: 767, Mismatches: 141, Indels: 156
0.72 0.13 0.15
Matches are distributed among these distances:
75 68 0.09
76 12 0.02
77 55 0.07
78 36 0.05
79 183 0.24
80 118 0.15
81 90 0.12
82 8 0.01
83 15 0.02
84 6 0.01
85 3 0.00
86 4 0.01
87 4 0.01
88 25 0.03
89 8 0.01
90 57 0.07
91 45 0.06
92 4 0.01
93 26 0.03
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (78 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCCGAGGTATTT
TTCAATTTATGTT
Found at i:66013423 original size:75 final size:76
Alignment explanation
Indices: 66013265--66013425 Score: 193
Period size: 75 Copynumber: 2.1 Consensus size: 76
66013255 TTTCAAAATC
* *
66013265 TATTTTCAATTTCTGTTCATCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCT
1 TATTTTCAATTTATGTTCATC-AAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTGGGCT
* **
66013330 CACACGCTGAGG
65 CACACACCAAGG
* *
66013342 TATTTTCAATTTATGTTCGTC-AAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTCTCGGGC
1 TATTTTCAATTTATGTTCATCAAAAAATCAACTCATATTG-CAAGAGGTGAGTTGAGCCT-GGGC
*
66013405 -CACATACCAAGG
64 TCACACACCAAGG
*
66013417 TCTTTTCAA
1 TATTTTCAA
66013426 ATTCTGTTTT
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
75 50 0.68
76 4 0.05
77 19 0.26
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (76 bp):
TATTTTCAATTTATGTTCATCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTGGGCTC
ACACACCAAGG
Found at i:66013502 original size:168 final size:168
Alignment explanation
Indices: 66013117--66014051 Score: 778
Period size: 168 Copynumber: 5.6 Consensus size: 168
66013107 TCTGCCTTTC
* * * * *
66013117 AAAAAAATCAACTCATATTACGAGAGGTGAGTTGAG-CTTCAGATTACACACTGAGGTATTTTTT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCACACGCTGAGGTA-TTTTT
* ** * * * *
66013181 CAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATG
64 CAATTTATGTTCGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACATG
* * * * * * **
66013246 TCGAGGTATTTTCAAAATCTATTTTCAATTTCTGTTCATC--
127 CCAAGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAA
*
66013286 AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTA-TTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTTCA
*
66013350 ATTTATGTTCGTCAAAAATCAACTCATATTGTC-AGAGGTGAGTTGAGTCTCGGGCCACATACCA
66 ATTTATGTTCGTCAAAAATCAACTCATATTG-CGAGAGGTGAGTTGAGTCTCGGGCCACATGCCA
*
66013414 AGGTCTTTTCAAATTCTGTTTTTAATTTCTATTTTTCAAA
130 AGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTC-AA
*
66013454 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTA-TTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTTCA
* * *
66013518 ATTTCTGTTCGTCAAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCGAGCCACATGCCGA
66 ATTTATGTTCGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACATGCC-A
66013583 A-GTCTTTTCAAATTCTATTTTTAATTTCTATTTTTC-A
130 AGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAA
* * *
66013620 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTTC
* ** * * * * * * *
66013684 AATTTCTGTTTTTTTTTTAAAAAATTAACTCATATTACGAGAGATGAGTTGAGGCTCGGGTCACG
65 AATTTATG-----TTCGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACA
* *
66013749 CGCCGAGG-----T---A---T-TTTTTAATTTCTATTTTTC-A
125 TGCCAAGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAA
**** * *
66013780 AAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTA-TTTTC
1 AAAAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTTC
* ** * ** *
66013843 AATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTCGGGTCACA
65 AATTTATGTTCGTC-----AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACA
** * * *
66013908 CACCGAGG-----T---A---T-TTTTCAATTTCTGTTTTTCAA
125 TGCCAAGGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAA
* *
66013940 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG-TCACACGCTGAGGTA-TTTTC
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGGTATTTTTC
* ** *
66014003 AATTTTTTTGGCTTTTTTAAAAATCAACTCATAATT-CGAGAGGTGAGTT
65 AA--TTTAT-G-TTCGTCAAAAATCAACTCAT-ATTGCGAGAGGTGAGTT
66014052 AAACTTCGGG
Statistics
Matches: 669, Mismatches: 67, Indels: 70
0.83 0.08 0.09
Matches are distributed among these distances:
154 5 0.01
159 108 0.16
160 129 0.19
161 2 0.00
162 4 0.01
163 1 0.00
164 6 0.01
165 72 0.11
166 55 0.08
167 33 0.05
168 153 0.23
169 50 0.07
170 3 0.00
171 1 0.00
172 47 0.07
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (168 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTTCA
ATTTATGTTCGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCGGGCCACATGCCAA
GGTCTTTTCAAATTCTATTTTTAATTTCTATTTTTCAA
Found at i:66013591 original size:75 final size:75
Alignment explanation
Indices: 66013456--66013598 Score: 189
Period size: 75 Copynumber: 1.9 Consensus size: 75
66013446 TTTTCAAAAA
* * * * * *
66013456 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCACACGCCGAAGTATTTTCAAAT
66013521 TCTGTTCGTC
66 TCTGTTCGTC
* * *
66013531 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGTCTCGAGC-CACATGCCGAAGTCTTTTCAAA
1 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCG-GCTCACACGCCGAAGTATTTTCAAA
66013595 TTCT
65 TTCT
66013599 ATTTTTAATT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
75 56 0.97
76 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31
Consensus pattern (75 bp):
AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGCTCACACGCCGAAGTATTTTCAAAT
TCTGTTCGTC
Found at i:66013706 original size:80 final size:80
Alignment explanation
Indices: 66013598--66014007 Score: 499
Period size: 80 Copynumber: 5.2 Consensus size: 80
66013588 TTTCAAATTC
* * *
66013598 TATTTTT-AATTTCT-ATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCA
1 TATTTTTCAATTTCTGTTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66013661 GGTCACACGCCGAGG
66 GGTCACACGCCGAGG
*** * * * *
66013676 TATTTTTCAATTTCTGTTTTTTTTTTAAAAAATTAACTCATATTACGAGAGATGAGTTGAGGCTC
1 TATTTTTCAATTTCTG-TTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
66013741 GGGTCACGCGCCGAGG
65 AGGTCACACGCCGAGG
* * *
66013757 TATTTTTTAATTTCT-ATTTTTCAAAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTC
1 TATTTTTCAATTTCTGTTTTTTAAAAAAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTC
** * * *
66013820 AAATCACGCACTGAGG
65 AGGTCACACGCCGAGG
* * *
66013836 TA-TTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAACCTC
1 TATTTTTCAATTTCTGTTTTT-TAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* *
66013900 GGGTCACACACCGAGG
65 AGGTCACACGCCGAGG
* *
66013916 TATTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCA
1 TATTTTTCAATTTCTGTTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
*
66013981 GGTCACACGCTGAGG
66 GGTCACACGCCGAGG
66013996 TA-TTTTCAATTT
1 TATTTTTCAATTT
66014008 TTTTGGCTTT
Statistics
Matches: 281, Mismatches: 43, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
78 18 0.06
79 74 0.26
80 104 0.37
81 85 0.30
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (80 bp):
TATTTTTCAATTTCTGTTTTTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
GGTCACACGCCGAGG
Found at i:66013819 original size:160 final size:158
Alignment explanation
Indices: 66013600--66014062 Score: 619
Period size: 160 Copynumber: 2.9 Consensus size: 158
66013590 TCAAATTCTA
*
66013600 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTC
1 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
* *
66013665 ACACGCCGAGGTATTTTTCAATTTCTGTTTTTTTTTTAAAAAATTAACTCATATTACGAGAGATG
66 ACACGCTGAGGTA-TTTTCAATTTCTGTTTTTTTTTTAAAAAATCAACTCATATT-CGAGAGATG
** * *
66013730 AGTTGAGGCTCGGGTCACGCGCCGAGGTAT
129 AGTTGAACCTCGGGTCACACACCGAGGTAT
**
66013760 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCAAAT
1 TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATT-GCGAGAGGTGAGTTGAGCCTCAGGT
* * *****
66013824 CACGCACTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGATG
65 CACACGCTGAGGTATTTTCAATTTCTGTTTTTTTTTTAAAAAATCAACTCATATT-CGAGAGATG
66013889 AGTTGAACCTCGGGTCACACACCGAGGTAT
129 AGTTGAACCTCGGGTCACACACCGAGGTAT
* * *
66013919 TTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGT
1 TTTTTAATTTCTATTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT
* *
66013984 CACACGCTGAGGTATTTTCAATTT-T-TTTGGCTTTTTT-AAAAATCAACTCATAATTCGAGAGG
65 CACACGCTGAGGTATTTTCAATTTCTGTTT--TTTTTTTAAAAAATCAACTCAT-ATTCGAGAGA
* *
66014046 TGAGTTAAACTTCGGGT
127 TGAGTTGAACCTCGGGT
66014063 AGCATCCCGA
Statistics
Matches: 265, Mismatches: 32, Indels: 13
0.85 0.10 0.04
Matches are distributed among these distances:
158 3 0.01
159 124 0.47
160 137 0.52
161 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (158 bp):
TTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTC
ACACGCTGAGGTATTTTCAATTTCTGTTTTTTTTTTAAAAAATCAACTCATATTCGAGAGATGAG
TTGAACCTCGGGTCACACACCGAGGTAT
Found at i:66014025 original size:80 final size:79
Alignment explanation
Indices: 66013620--66014053 Score: 404
Period size: 80 Copynumber: 5.4 Consensus size: 79
66013610 CTATTTTTCA
* *
66013620 AAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTTCA
*
66013685 ATTTCTGTTTTTTTTT
66 ATTT-T-TTTGTTTTT
* * * * * * * * *
66013701 TAAAAAATTAACTCATATTACGAGAGATGAGTTGAGGCTCGGGTCACGCGCCGAGGTATTTTTTA
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTTCA
* **
66013766 ATTTCTATT-TTTCA
66 ATTT-TTTTGTTTTT
* ** * * *
66013780 AAAAAAATCAACTCATATTAG-GAGAGGTGAGTTGAGCCTCAAATCACGCACTGAGGTA-TTTTC
1 AAAAAAATCAACTCATATT-GCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTTC
*
66013843 AA--TTTCTGTTTTT
65 AATTTTTTTGTTTTT
* * *
66013856 CAAAAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAA-CCTCGGGTCACACACCGAGGTATT
1 ----AAAAAAATCAACTCATATTGCGAGAGGTGAGTT-AAGCCTCAGGTCACACGCCGAGGTATT
*
66013920 TTTCAA--TTTCTGTTTTT
61 TTTCAATTTTTTTGTTTTT
*
66013937 CAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTA-TTT
1 ---AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTT
66014001 TCAATTTTTTTGGCTTTTT
63 TCAATTTTTTT-G-TTTTT
*
66014020 -TAAAAATCAACTCATAATT-CGAGAGGTGAGTTAA
1 AAAAAAATCAACTCAT-ATTGCGAGAGGTGAGTTAA
66014054 ACTTCGGGTA
Statistics
Matches: 297, Mismatches: 41, Indels: 32
0.80 0.11 0.09
Matches are distributed among these distances:
75 2 0.01
76 4 0.01
78 6 0.02
79 89 0.30
80 105 0.35
81 85 0.29
82 1 0.00
83 5 0.02
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (79 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCCGAGGTATTTTTCA
ATTTTTTTGTTTTT
Found at i:66014025 original size:159 final size:155
Alignment explanation
Indices: 66013432--66014098 Score: 645
Period size: 159 Copynumber: 4.1 Consensus size: 155
66013422 TCAAATTCTG
*
66013432 TTTTT-AATTTCTATTTTTCAAAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TG
1 TTTTTCAATTTCTATTTTTC--AAAAAAAATCAACTCATATTG-GAGAGGTGAGTTGAGCCTCAG
* *
66013495 GCTCACACGCTGAGGTATTTTCAATTTCTG-TTC---GTCAAAAATCAACTCATATTGCGAGAGA
63 G-TCACACGCTGAGGTATTTTCAATTTCTGTTTCTTTTTTAAAAATCAACTCATATT-CGAGAGA
** * * * *
66013556 TGAGTTGAGTCTCGAGCCACATGCCGAAGTCTTTTCAAA
126 TGAGTTGAACCTCGGGTCACA-CCCG-AG----GT---A
*
66013595 TTCTATTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC
1 ---T-TTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATTG-GAGAGGTGAGTTGAGCCTC
* * *
66013660 AGGTCACACGCCGAGGTATTTTTCAATTTCTGTTTTTTTTTTAAAAAATTAACTCATATTACGAG
61 AGGTCACACGCTGAGGTA-TTTTCAATTTCTGTTTCTTTTTT-AAAAATCAACTCATATT-CGAG
** *
66013725 AGATGAGTTGAGGCTCGGGTCACGCGCCGAGGTA
123 AGATGAGTTGAACCTCGGGTCACAC-CCGAGGTA
* **
66013759 TTTTTTAATTTCTATTTTTCAAAAAAAATCAACTCATATTAGGAGAGGTGAGTTGAGCCTCAAAT
1 TTTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATT-GGAGAGGTGAGTTGAGCCTCAGGT
* * ****
66013824 CACGCACTGAGGTATTTTCAATTTCTGTTT-TTCAAAAAAAAAATCAACTCATATTGCGAGAGAT
65 CACACGCTGAGGTATTTTCAATTTCTGTTTCTT--TTTTAAAAATCAACTCATATT-CGAGAGAT
66013888 GAGTTGAACCTCGGGTCACACACCGAGGTA
127 GAGTTGAACCTCGGGTCACAC-CCGAGGTA
* *
66013918 TTTTTCAATTTCTGTTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
1 TTTTTCAATTTCTATTTTTC-AAAAAAAATCAACTCATATTG-GAGAGGTGAGTTGAGCCTCAGG
*
66013983 TCACACGCTGAGGTATTTTCAATTT-T-TTTGGCTTTTTTAAAAATCAACTCATAATTCGAGAGG
64 TCACACGCTGAGGTATTTTCAATTTCTGTTT--CTTTTTTAAAAATCAACTCAT-ATTCGAGAGA
* * *
66014046 TGAGTTAAACTTCGGGT-AGCATCCCGAGCTA
126 TGAGTTGAACCTCGGGTCA-CA-CCCGAGGTA
*
66014077 -TTTTCAATTTCTTGTTTTTCAA
1 TTTTTCAATTTC-TATTTTTCAA
66014099 TAAAGAATAA
Statistics
Matches: 436, Mismatches: 43, Indels: 52
0.82 0.08 0.10
Matches are distributed among these distances:
158 19 0.04
159 138 0.32
160 137 0.31
161 4 0.01
164 1 0.00
166 55 0.13
167 20 0.05
168 16 0.04
171 3 0.01
172 43 0.10
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (155 bp):
TTTTTCAATTTCTATTTTTCAAAAAAAATCAACTCATATTGGAGAGGTGAGTTGAGCCTCAGGTC
ACACGCTGAGGTATTTTCAATTTCTGTTTCTTTTTTAAAAATCAACTCATATTCGAGAGATGAGT
TGAACCTCGGGTCACACCCGAGGTA
Found at i:66014600 original size:17 final size:17
Alignment explanation
Indices: 66014578--66014623 Score: 76
Period size: 16 Copynumber: 2.8 Consensus size: 17
66014568 GAGAAAAAAG
66014578 AGCAAAAAAAAAATTCC
1 AGCAAAAAAAAAATTCC
*
66014595 AGC-AAAAAAAATTTCC
1 AGCAAAAAAAAAATTCC
66014611 AGCAAAAAAAAAA
1 AGCAAAAAAAAAA
66014624 CTAAAAAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 15 0.58
17 11 0.42
ACGTcount: A:0.67, C:0.15, G:0.07, T:0.11
Consensus pattern (17 bp):
AGCAAAAAAAAAATTCC
Found at i:66015195 original size:15 final size:16
Alignment explanation
Indices: 66015162--66015195 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
66015152 TTTTATTTGT
66015162 AATTGGTCTAAACAAA
1 AATTGGTCTAAACAAA
*
66015178 AATTGGTCTTAA-AAA
1 AATTGGTCTAAACAAA
66015193 AAT
1 AAT
66015196 AAAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (16 bp):
AATTGGTCTAAACAAA
Found at i:66015202 original size:9 final size:8
Alignment explanation
Indices: 66015187--66015212 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
66015177 AAATTGGTCT
66015187 TAAAAAAA
1 TAAAAAAA
66015195 TAAAAAAA
1 TAAAAAAA
66015203 TAAAAAAA
1 TAAAAAAA
66015211 TA
1 TA
66015213 TTAAATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (8 bp):
TAAAAAAA
Found at i:66022927 original size:25 final size:25
Alignment explanation
Indices: 66022893--66022946 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
66022883 CATAAACATA
*
66022893 TCATACAAAGCAATAATTGCCAAAT
1 TCATACAAAGCAATAATTACCAAAT
66022918 TCATACAAAGCAATAATTACCAAAT
1 TCATACAAAGCAATAATTACCAAAT
66022943 TCAT
1 TCAT
66022947 TCATTCTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.48, C:0.20, G:0.06, T:0.26
Consensus pattern (25 bp):
TCATACAAAGCAATAATTACCAAAT
Found at i:66026504 original size:55 final size:54
Alignment explanation
Indices: 66026443--66026586 Score: 182
Period size: 55 Copynumber: 2.6 Consensus size: 54
66026433 AGGGAATGAA
* **
66026443 GCCAAAGTGAAAACTCACAAAGGGTGCTTTGAGACTT-CTTAAAATAAAAAAAGGG
1 GCCAAAGTGAAAACCCACAAAGGGTGCTTTGAGACTTGAATAAAA-AAAAAAA-GG
* * ***
66026498 GCCAAAGTGAAAACCCACAAAGGGTACTTTGGGACTTGAATAAAAATGGAAAGG
1 GCCAAAGTGAAAACCCACAAAGGGTGCTTTGAGACTTGAATAAAAAAAAAAAGG
*
66026552 GCCAAAGTGAAAACCCACAAAGGGCGCTTTGAGAC
1 GCCAAAGTGAAAACCCACAAAGGGTGCTTTGAGAC
66026587 CCAATAATAA
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
54 34 0.44
55 38 0.49
56 5 0.06
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (54 bp):
GCCAAAGTGAAAACCCACAAAGGGTGCTTTGAGACTTGAATAAAAAAAAAAAGG
Found at i:66028030 original size:180 final size:179
Alignment explanation
Indices: 66027711--66028451 Score: 923
Period size: 180 Copynumber: 4.2 Consensus size: 179
66027701 ACATTGGTAA
* * * * * ***
66027711 AAATTGAAGATCTTATTTCCCTGAAGTTGCAGTGGAGTAGATCTTTGGAGATGGTGAATCTTATC
1 AAATTGAAGATTTTATCTCCCTGAAGTTACAATGGAGCAGATCTTCACAGATGGTGAATCTTATC
* * * * * * *
66027776 TCCATGTATCGGTAATGGAGCAGATTTTACCACCAAGCCTTACCTCTCTAAGGTAGCAAGAGAGT
66 TCCATGTATCGGCAATGGAGCAGATTTAACCACTAAACCTTATCTCTCTGAGGTAGCAAGAGAGC
*
66027841 AGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
131 AAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* *
66027890 AGAATTAAAGATTTTATCTCCCTGAAGTTACAACGGAGCAGATCTTCACAGATGGCT-AATCTTA
1 A-AATTGAAGATTTTATCTCCCTGAAGTTACAATGGAGCAGATCTTCACAGATGG-TGAATCTTA
* *
66027954 TCTCCATGTATCGGCAATGGAGCAGATTTAAGCC-TTAAACCTTATCTCTTTGAGGTAGCAAGAG
64 TCTCCATGTATCGGCAATGGAGCAGATTTAA-CCACTAAACCTTATCTCTCTGAGGTAGCAAGAG
* * *
66028018 AGCAAGTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTG
128 AGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* * * *
66028070 AAGATTGAAGGTTTTATCTCCCT-AA---ACAGTAGTGGAGCAAATC--GA-AGACGGTGAATCT
1 AA-ATTGAAGATTTTATCTCCCTGAAGTTACA--A-TGGAGCAGATCTTCACAGATGGTGAATCT
* * *
66028128 TATCTCCGTGTATCGGCAATGGAGCAGATTTTACCACT-AACCTCATCTCTCTGAGGTAGCAAGA
62 TATCTCCATGTATCGGCAATGGAGCAGATTTAACCACTAAACCTTATCTCTCTGAGGTAGCAAGA
* *
66028192 GAGCAAGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACCG
127 GAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
* * **
66028245 AAGATTGAAGATTCTATCTCCCTGAAGTTGCAGGGGAGCAGATCTTCACAGATGGCT-AATCTTA
1 AA-ATTGAAGATTTTATCTCCCTGAAGTTACAATGGAGCAGATCTTCACAGATGG-TGAATCTTA
* * * *
66028309 TCTCTATGTATCGGCAATGGAGCAGATTTAAGCC-TTAAGCCTTATCTCTCTGAAGTAGCAAGAG
64 TCTCCATGTATCGGCAATGGAGCAGATTTAA-CCACTAAACCTTATCTCTCTGAGGTAGCAAGAG
*
66028373 AGCAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
128 AGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
66028425 AAAATTGAAGATTTTATCTCCCT-AAGT
1 -AAATTGAAGATTTTATCTCCCTGAAGT
66028452 AGTAGCGGAG
Statistics
Matches: 484, Mismatches: 58, Indels: 40
0.83 0.10 0.07
Matches are distributed among these distances:
175 96 0.20
176 56 0.12
177 1 0.00
178 2 0.00
179 60 0.12
180 264 0.55
181 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (179 bp):
AAATTGAAGATTTTATCTCCCTGAAGTTACAATGGAGCAGATCTTCACAGATGGTGAATCTTATC
TCCATGTATCGGCAATGGAGCAGATTTAACCACTAAACCTTATCTCTCTGAGGTAGCAAGAGAGC
AAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTG
Found at i:66028051 original size:43 final size:43
Alignment explanation
Indices: 66027994--66028077 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
66027984 AGCCTTAAAC
* *
66027994 CTTATCTCTTTGAGGTAGCAAGAGAGCA-AGTTGAAGATTGAGT
1 CTTATCTCTTTGAGGTAGCAAGAAAGCAGA-CTGAAGATTGAGT
66028037 CTTATCT-TTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGA
1 CTTATCTCTT-TGAGGTAGCAAGAAAGCAGACTGAAGATTGA
66028078 AGGTTTTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
42 2 0.05
43 34 0.92
44 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (43 bp):
CTTATCTCTTTGAGGTAGCAAGAAAGCAGACTGAAGATTGAGT
Found at i:66028354 original size:355 final size:356
Alignment explanation
Indices: 66027763--66028513 Score: 1130
Period size: 355 Copynumber: 2.1 Consensus size: 356
66027753 CTTTGGAGAT
* *
66027763 GGTGAATCTTATCTCCATGTATCGGTAATGGAGCAGATTTTACCACCAAGCCTTACCTCTCTAAG
1 GGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTCACCTCTCTAAG
* * *
66027828 GTAGCAAGAGAGTAGGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAGA
66 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACCGAGA
*
66027893 ATTAAAGATTTTATCTCCCTGAAGTTACAACGGAGCAGATCTTCACAGATGGCTAATCTTATCTC
131 ATTAAAGATTCTATCTCCCTGAAGTTACAACGGAGCAGATCTTCACAGATGGCTAATCTTATCTC
* *
66027958 CATGTATCGGCAATGGAGCAGATTTAAGCCTTAAACCTTATCTCTTTGAGGTAGCAAGAGAGCAA
196 CATGTATCGGCAATGGAGCAGATTTAAGCCTTAAACCTTATCTCTCTGAAGTAGCAAGAGAGCAA
* * * *
66028023 GTTGAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTGAAGATTGAAGGTTTTATC
261 GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAAATTGAAGATTTTATC
*
66028088 TCCCTAAACAGTAGTGGAGCAAATCGAAGAC
326 TCCCTAAACAGTAGCGGAGCAAATCGAAGAC
* * * *
66028119 GGTGAATCTTATCTCCGTGTATCGGCAATGGAGCAGATTTTACCACTAA-CCTCATCTCTCTGAG
1 GGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTCACCTCTCTAAG
*
66028183 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACCGA-A
66 GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACCGAGA
* * **
66028247 GATTGAAGATTCTATCTCCCTGAAGTTGCAGGGGAGCAGATCTTCACAGATGGCTAATCTTATCT
131 -ATTAAAGATTCTATCTCCCTGAAGTTACAACGGAGCAGATCTTCACAGATGGCTAATCTTATCT
* *
66028312 CTATGTATCGGCAATGGAGCAGATTTAAGCCTTAAGCCTTATCTCTCTGAAGTAGCAAGAGAGCA
195 CCATGTATCGGCAATGGAGCAGATTTAAGCCTTAAACCTTATCTCTCTGAAGTAGCAAGAGAGCA
* *
66028377 GGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAAATTGAAGATTTTAT
260 AGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAAATTGAAGATTTTAT
** * ** *
66028442 CTCCCTAAGTAGTAGCGGAGCAGATCGGGGAT
325 CTCCCTAAACAGTAGCGGAGCAAATCGAAGAC
**** *
66028474 AACAAATCTTATCTTCATGTA-CTGGCAATGGAGCAGATTT
1 GGTGAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTT
66028514 AAGTCACCAG
Statistics
Matches: 355, Mismatches: 38, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
354 2 0.01
355 307 0.86
356 46 0.13
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (356 bp):
GGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTACCACCAAGCCTCACCTCTCTAAG
GTAGCAAGAGAGCAAGTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACCGAGA
ATTAAAGATTCTATCTCCCTGAAGTTACAACGGAGCAGATCTTCACAGATGGCTAATCTTATCTC
CATGTATCGGCAATGGAGCAGATTTAAGCCTTAAACCTTATCTCTCTGAAGTAGCAAGAGAGCAA
GTTGAAGAATGAGTCTTATCTTCCTGAGGTAGCAAGAAAGCAGACTGAAAATTGAAGATTTTATC
TCCCTAAACAGTAGCGGAGCAAATCGAAGAC
Found at i:66029566 original size:26 final size:24
Alignment explanation
Indices: 66029535--66029584 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
66029525 AAATAAAAAA
*
66029535 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
66029561 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
66029585 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:66029604 original size:21 final size:21
Alignment explanation
Indices: 66029555--66029613 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
66029545 ATAATAAATC
*
66029555 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
66029575 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
66029597 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
66029614 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:66032219 original size:14 final size:14
Alignment explanation
Indices: 66032202--66032251 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
66032192 TTTTATGTGT
66032202 TTTTTTTATTTCTG
1 TTTTTTTATTTCTG
* *
66032216 TTTTATT-TTT-GG
1 TTTTTTTATTTCTG
* *
66032228 TTTTTTAATTTCTA
1 TTTTTTTATTTCTG
66032242 TTTTTTTATT
1 TTTTTTTATT
66032252 CTAATGGGCC
Statistics
Matches: 27, Mismatches: 7, Indels: 4
0.71 0.18 0.11
Matches are distributed among these distances:
12 6 0.22
13 6 0.22
14 15 0.56
ACGTcount: A:0.12, C:0.04, G:0.06, T:0.78
Consensus pattern (14 bp):
TTTTTTTATTTCTG
Found at i:66032219 original size:26 final size:25
Alignment explanation
Indices: 66032189--66032248 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
66032179 CTGATTTTGG
* *
66032189 GTTTTTTATGTGTTTTTTTTATTTCT
1 GTTTTTT-TGTGGTTTTTTAATTTCT
*
66032215 GTTTTATTTTTGGTTTTTTAATTTCT
1 GTTTT-TTTGTGGTTTTTTAATTTCT
*
66032241 ATTTTTTT
1 GTTTTTTT
66032249 ATTCTAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 3 0.10
26 24 0.83
27 2 0.07
ACGTcount: A:0.10, C:0.03, G:0.10, T:0.77
Consensus pattern (25 bp):
GTTTTTTTGTGGTTTTTTAATTTCT
Found at i:66036254 original size:25 final size:26
Alignment explanation
Indices: 66036226--66036282 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
66036216 ATTTTGGGTT
*
66036226 TTTTATTTGT-GTGTTTTT-ATTTCTG
1 TTTTATTTGTGGT-TTTTTAATTTCTA
*
66036251 TTTTATTTTTGGTTTTTTAATTTCTA
1 TTTTATTTGTGGTTTTTTAATTTCTA
66036277 TTTTAT
1 TTTTAT
66036283 ATTCTAATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.12, C:0.04, G:0.11, T:0.74
Consensus pattern (26 bp):
TTTTATTTGTGGTTTTTTAATTTCTA
Found at i:66036948 original size:2 final size:2
Alignment explanation
Indices: 66036941--66036965 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
66036931 TGTAACAAAC
66036941 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
66036966 AAGGTTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:66039901 original size:57 final size:57
Alignment explanation
Indices: 66039813--66039927 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
66039803 TGTATTGGCT
66039813 GCCAATACACCCCTAATCAGTAGGGCCCCACTTAATCCCCTTTAATCCTTTGTTTTG
1 GCCAATACACCCCTAATCAGTAGGGCCCCACTTAATCCCCTTTAATCCTTTGTTTTG
*
66039870 GCCAATACACCCCTAATCAGTAGGGCCCCACTTAATCCCTTTTAATCCTTTGTTTTG
1 GCCAATACACCCCTAATCAGTAGGGCCCCACTTAATCCCCTTTAATCCTTTGTTTTG
66039927 G
1 G
66039928 TTTAGGGTAT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.23, C:0.32, G:0.13, T:0.32
Consensus pattern (57 bp):
GCCAATACACCCCTAATCAGTAGGGCCCCACTTAATCCCCTTTAATCCTTTGTTTTG
Found at i:66042954 original size:16 final size:16
Alignment explanation
Indices: 66042933--66043000 Score: 127
Period size: 16 Copynumber: 4.2 Consensus size: 16
66042923 GATTTGCTAT
66042933 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
66042949 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
66042965 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
66042981 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
66042997 TACA
1 TACA
66043001 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:66045710 original size:68 final size:70
Alignment explanation
Indices: 66045622--66045755 Score: 184
Period size: 68 Copynumber: 1.9 Consensus size: 70
66045612 TAATAAATTT
* * * * *
66045622 AATATTAAATTTAATTTAATACTTATCTTA-AT-AGTATTTTATT-AATTTAATATTAAAGTGAT
1 AATATTAAATTTAATATAATACTTATC-AAGATAAATATTATATTAAATTTAATATTAAAGCGAT
66045684 TATCTC
65 TATCTC
*
66045690 AATATTAAATTTAATATAATATTTATCAAGATAAATATTATATTAAATTTAATATTAAAGCGATT
1 AATATTAAATTTAATATAATACTTATCAAGATAAATATTATATTAAATTTAATATTAAAGCGATT
66045755 A
66 A
66045756 AGTTTAATTA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
67 1 0.02
68 27 0.47
69 9 0.16
70 20 0.35
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.46
Consensus pattern (70 bp):
AATATTAAATTTAATATAATACTTATCAAGATAAATATTATATTAAATTTAATATTAAAGCGATT
ATCTC
Found at i:66054069 original size:23 final size:22
Alignment explanation
Indices: 66054017--66054070 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
66054007 ACACAACCGT
66054017 GAATTTTTTGGACTTTTTAACA
1 GAATTTTTTGGACTTTTTAACA
* * *
66054039 GAAATTTTTGTACCTTTTTTACTA
1 GAATTTTTTGGA-CTTTTTAAC-A
66054063 -AATTTTTT
1 GAATTTTTT
66054071 CAAAGTTGTA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 10 0.38
23 15 0.58
24 1 0.04
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.56
Consensus pattern (22 bp):
GAATTTTTTGGACTTTTTAACA
Found at i:66061032 original size:21 final size:21
Alignment explanation
Indices: 66061006--66061046 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
66060996 AGACGAGCAA
* *
66061006 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
66061027 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
66061047 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:66066817 original size:122 final size:122
Alignment explanation
Indices: 66066587--66066843 Score: 342
Period size: 122 Copynumber: 2.1 Consensus size: 122
66066577 TACCTAACTG
* *
66066587 AATTTTAATACGACATTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAATTCACTGG
1 AATTTTAATACGACACTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
** * *
66066652 TCAGAATTGTGGTCCCAAAACCACTTTTTCTGACATCATTGAAAAT-GAGTTATTACA
66 TCAGAATTGTGGTCCCAAAACCACGATTTCCGACATCACTGAAAATAG-GTTATTACA
* * *
66066709 AATTTTGATATGACACTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCATTGG
1 AATTTTAATACGACACTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
** *
66066774 TCTA-AATTGTGG-CCACAAAATTACGATTTCCGACA-CTACTGAAAATAGGTTGTTACA
66 TC-AGAATTGTGGTCC-CAAAACCACGATTTCCGACATC-ACTGAAAATAGGTTATTACA
66066831 AATTTTAATACGA
1 AATTTTAATACGA
66066844 AATTGTAGTC
Statistics
Matches: 117, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
121 3 0.03
122 112 0.96
123 2 0.02
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (122 bp):
AATTTTAATACGACACTCTAATAACCTTATAAATATTAAATAAATAATATTTACTAACTCACTGG
TCAGAATTGTGGTCCCAAAACCACGATTTCCGACATCACTGAAAATAGGTTATTACA
Found at i:66069749 original size:15 final size:15
Alignment explanation
Indices: 66069731--66069761 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
66069721 AAAATAAGGT
66069731 TTTTTAAAATATTTA
1 TTTTTAAAATATTTA
*
66069746 TTTTTATAATATTTA
1 TTTTTAAAATATTTA
66069761 T
1 T
66069762 CTAAAATTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (15 bp):
TTTTTAAAATATTTA
Found at i:66075567 original size:36 final size:36
Alignment explanation
Indices: 66075520--66075592 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
66075510 AATTAATTAG
66075520 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
1 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
66075556 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
1 TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
66075592 T
1 T
66075593 TTCTTTATTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (36 bp):
TGAGTATTGTTACAATTGAATTTGCCACGTTTATTC
Found at i:66076205 original size:68 final size:68
Alignment explanation
Indices: 66076091--66076233 Score: 268
Period size: 68 Copynumber: 2.1 Consensus size: 68
66076081 CACTCACTTG
*
66076091 TGGTAGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
1 TGGTGGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
66076156 GGA
66 GGA
*
66076159 TGGTGGAAACATCTGAGAAGGCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
1 TGGTGGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
66076224 GGA
66 GGA
66076227 TGGTGGA
1 TGGTGGA
66076234 CTAAGCTTGA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 73 1.00
ACGTcount: A:0.28, C:0.12, G:0.32, T:0.28
Consensus pattern (68 bp):
TGGTGGAAACATCTGAGAAGCCAAGTAAGCTTGAGTGTCCCAAGTTTGATGGTAGTGATTTTCGA
GGA
Found at i:66077049 original size:20 final size:18
Alignment explanation
Indices: 66077020--66077064 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 18
66077010 AACGAAAAGC
66077020 AGGG-AAAGAAAGAAAGAA
1 AGGGAAAAGAAAG-AAGAA
66077038 AGGAGAAAAGAAAGAAGAA
1 AGG-GAAAAGAAAGAAGAA
66077057 AGGGAAAA
1 AGGGAAAA
66077065 TTCAAGGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 8 0.32
19 9 0.36
20 8 0.32
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (18 bp):
AGGGAAAAGAAAGAAGAA
Found at i:66079604 original size:23 final size:22
Alignment explanation
Indices: 66079518--66079602 Score: 75
Period size: 21 Copynumber: 3.9 Consensus size: 22
66079508 CCTGATCAGT
*
66079518 ATACGACACATAAAGTGCCTAA
1 ATACGACACACAAAGTGCCTAA
* * *
66079540 A-ACGACACACGAGGTGCCT-T
1 ATACGACACACAAAGTGCCTAA
* * *
66079560 ATATGACACACGAGGTGCCTGAA
1 ATACGACACACAAAGTGCCT-AA
*
66079583 ATACGACACATAAAGTGCCT
1 ATACGACACACAAAGTGCCT
66079603 GATCGATAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 1 0.02
21 32 0.64
22 1 0.02
23 16 0.32
ACGTcount: A:0.38, C:0.25, G:0.20, T:0.18
Consensus pattern (22 bp):
ATACGACACACAAAGTGCCTAA
Found at i:66080001 original size:15 final size:15
Alignment explanation
Indices: 66079976--66080033 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
66079966 TCATATATAT
*
66079976 TATATAATTCAAACAA
1 TATA-AATTCAATCAA
66079992 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
66080007 AATAATTTCAATCAA
1 TATAAATTCAATCAA
66080022 TATAAATTCAAT
1 TATAAATTCAAT
66080034 AAATTCATCG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
15 33 0.89
16 4 0.11
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.34
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:66080318 original size:24 final size:22
Alignment explanation
Indices: 66080269--66080318 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
66080259 AATTTTCCAT
* *
66080269 TTTCTCCCCTTCTTTCTTTCTT
1 TTTCTCCCCTTCTCTCTTTCTA
*
66080291 TTTCTCCCCTGCTCTCTGTTTCTA
1 TTTCTCCCCT--TCTCTCTTTCTA
66080315 TTTC
1 TTTC
66080319 CTTTCATTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 10 0.43
24 13 0.57
ACGTcount: A:0.02, C:0.36, G:0.04, T:0.58
Consensus pattern (22 bp):
TTTCTCCCCTTCTCTCTTTCTA
Found at i:66080353 original size:5 final size:5
Alignment explanation
Indices: 66080340--66080371 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
66080330 TTCTTTAGTT
66080340 TATATA TATAA TATAA TATAA TATAA TATAA T
1 TATA-A TATAA TATAA TATAA TATAA TATAA T
66080372 TAAAACATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TATAA
Found at i:66080407 original size:8 final size:8
Alignment explanation
Indices: 66080394--66080422 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
66080384 TATCTTTATT
66080394 ATATAATA
1 ATATAATA
66080402 ATATAATA
1 ATATAATA
66080410 ATATAATA
1 ATATAATA
66080418 ATATA
1 ATATA
66080423 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:66083974 original size:20 final size:20
Alignment explanation
Indices: 66083941--66083986 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
66083931 AAATTTCATT
66083941 GAAGG-ATTGCCGAACTCAA
1 GAAGGAATTGCCGAACTCAA
* *
66083960 GAAGGAATTGTCGAACTTAA
1 GAAGGAATTGCCGAACTCAA
66083980 GAAGGAA
1 GAAGGAA
66083987 GAATTCCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.41, C:0.13, G:0.28, T:0.17
Consensus pattern (20 bp):
GAAGGAATTGCCGAACTCAA
Found at i:66084783 original size:23 final size:23
Alignment explanation
Indices: 66084753--66084797 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
66084743 GGAAAGAAAG
66084753 ATAAAGAATCATCATCTTTTTCA
1 ATAAAGAATCATCATCTTTTTCA
66084776 ATAAAGAATCATCATCTTTTTC
1 ATAAAGAATCATCATCTTTTTC
66084798 CCATGCACCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (23 bp):
ATAAAGAATCATCATCTTTTTCA
Found at i:66086928 original size:46 final size:46
Alignment explanation
Indices: 66086876--66087332 Score: 567
Period size: 46 Copynumber: 10.0 Consensus size: 46
66086866 GCTTTCTGAA
* **
66086876 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGGC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * *
66086922 ATGAAATGAATAAGACCATGGTTGAAAGACACCATGGAAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
66086968 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACACGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
66087014 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
66087060 ATAAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
66087106 ATGAAATGTGTAAAACCATGGTTGAAAGATACCAAGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
66087152 ATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGA-
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
** * ** * ** * *
66087197 CGGGAATGAATAAGACCATGGTTGAAAGATAACATGGCAATGTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * * *
66087243 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGAAACCTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * *
66087289 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
66087333 TCGAAGATAA
Statistics
Matches: 358, Mismatches: 51, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
45 36 0.10
46 322 0.90
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:66098194 original size:5 final size:5
Alignment explanation
Indices: 66098184--66098216 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
66098174 ATTTGTGTGT
66098184 TTTTA TTTTA TTTTA -TTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
66098217 TTCACAGTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:66098202 original size:14 final size:14
Alignment explanation
Indices: 66098185--66098215 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
66098175 TTTGTGTGTT
66098185 TTTATTTTATTTTA
1 TTTATTTTATTTTA
66098199 TTTATTTTATTTTA
1 TTTATTTTATTTTA
66098213 TTT
1 TTT
66098216 TTTCACAGTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:66102784 original size:39 final size:39
Alignment explanation
Indices: 66102730--66102809 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
66102720 CTTAAATTAT
66102730 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
1 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
66102769 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
1 CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
66102808 CA
1 CA
66102810 CCGGATTCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (39 bp):
CAAAAACATCACGGTCAGTCATATTAAGATTATCAAGCC
Found at i:66110612 original size:12 final size:12
Alignment explanation
Indices: 66110595--66110628 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
66110585 CGGCCCACCC
66110595 ATATTAATTTTT
1 ATATTAATTTTT
*
66110607 ATATTATTTTTT
1 ATATTAATTTTT
66110619 ATA-TAATTTT
1 ATATTAATTTT
66110629 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:66110795 original size:30 final size:30
Alignment explanation
Indices: 66110752--66110813 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
66110742 CTTAACAAGA
66110752 AAATGCCTATAAAATAATAACAAAATTAAC
1 AAATGCCTATAAAATAATAACAAAATTAAC
* *
66110782 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTATAAAATAATAACAAAATTAAC
66110812 AA
1 AA
66110814 TAAATAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.60, C:0.11, G:0.03, T:0.26
Consensus pattern (30 bp):
AAATGCCTATAAAATAATAACAAAATTAAC
Found at i:66111619 original size:18 final size:17
Alignment explanation
Indices: 66111579--66111634 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 17
66111569 AATTAAACTC
66111579 AATTCAAATAATTAATTT
1 AATT-AAATAATTAATTT
66111597 AATTATAA-AATTAATTT
1 AATTA-AATAATTAATTT
*
66111614 ATATTAAATAAATAATTT
1 A-ATTAAATAATTAATTT
66111632 AAT
1 AAT
66111635 AAAAAAATAC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
17 15 0.44
18 19 0.56
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTAAATAATTAATTT
Found at i:66113620 original size:112 final size:112
Alignment explanation
Indices: 66113476--66113716 Score: 428
Period size: 112 Copynumber: 2.1 Consensus size: 112
66113466 AAAATTGTAC
*
66113476 TTTCGCCCCCTTAAAAATAATAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAGGCTA
1 TTTCGCCCCC-TAAAAATAATAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAAGCTA
*
66113541 TTCAAATGGTGAAATTGCATTTTTACTATAGTAAAAATTACAATTTAA
65 TTCAAATGGTGAAATTACATTTTTACTATAGTAAAAATTACAATTTAA
*
66113589 TTTCGCCCCCTAAAAATAATAAAAATTTGATTTAATCCATTAAAAATTATAAGAATATAAGCTAT
1 TTTCGCCCCCTAAAAATAATAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAAGCTAT
* *
66113654 TCAAATGGTGAAATTACATTTTTACTGTCGTAAAAATTACAATTTAA
66 TCAAATGGTGAAATTACATTTTTACTATAGTAAAAATTACAATTTAA
66113701 TTTCGCCCCCTAAAAA
1 TTTCGCCCCCTAAAAA
66113717 AATTTCTAGC
Statistics
Matches: 123, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
112 113 0.92
113 10 0.08
ACGTcount: A:0.43, C:0.14, G:0.08, T:0.35
Consensus pattern (112 bp):
TTTCGCCCCCTAAAAATAATAAAAATTTGATTTAATCCATTAAAAATTATAAAAATATAAGCTAT
TCAAATGGTGAAATTACATTTTTACTATAGTAAAAATTACAATTTAA
Found at i:66122828 original size:35 final size:35
Alignment explanation
Indices: 66122776--66122858 Score: 109
Period size: 35 Copynumber: 2.4 Consensus size: 35
66122766 CCCCAAATCT
*
66122776 TTAAACCA-TGAATCCCAAACTCATAACACGTAAA-C
1 TTAAACCATTGAA-CCCAAACCCATAACAC-TAAACC
*
66122811 TTGAACCATTGAACCCAAACCCATAACACTAAACC
1 TTAAACCATTGAACCCAAACCCATAACACTAAACC
66122846 TTAAACC-TTGAAC
1 TTAAACCATTGAAC
66122859 ACTAAATTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
34 10 0.23
35 29 0.67
36 4 0.09
ACGTcount: A:0.43, C:0.30, G:0.06, T:0.20
Consensus pattern (35 bp):
TTAAACCATTGAACCCAAACCCATAACACTAAACC
Found at i:66122872 original size:21 final size:21
Alignment explanation
Indices: 66122827--66122884 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
66122817 CATTGAACCC
66122827 AAACCCAT-AACACTAAACCTT
1 AAACCC-TGAACACTAAACCTT
* *
66122848 AAACCTTGAACACTAAA-TTT
1 AAACCCTGAACACTAAACCTT
*
66122868 CAAACCCTGAACCCTAA
1 -AAACCCTGAACACTAA
66122885 GCCTCGAGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 3 0.10
21 28 0.90
ACGTcount: A:0.45, C:0.31, G:0.03, T:0.21
Consensus pattern (21 bp):
AAACCCTGAACACTAAACCTT
Found at i:66123398 original size:10 final size:10
Alignment explanation
Indices: 66123362--66123414 Score: 70
Period size: 10 Copynumber: 5.1 Consensus size: 10
66123352 TCTAAATTTT
66123362 ATTTTTTAAA
1 ATTTTTTAAA
66123372 ATATTTTTAGAA
1 AT-TTTTTA-AA
*
66123384 CTTTTTTAAA
1 ATTTTTTAAA
*
66123394 ATTTTTTATA
1 ATTTTTTAAA
66123404 ATTTTTTAAA
1 ATTTTTTAAA
66123414 A
1 A
66123415 ATATAAATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
10 22 0.59
11 12 0.32
12 3 0.08
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:66123557 original size:17 final size:18
Alignment explanation
Indices: 66123537--66123570 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
66123527 AATTTTTTAT
66123537 TTTAA-TTATTCGAATTA
1 TTTAAGTTATTCGAATTA
66123554 TTTAAGTTATTCGAATT
1 TTTAAGTTATTCGAATT
66123571 GTAAAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.53
Consensus pattern (18 bp):
TTTAAGTTATTCGAATTA
Found at i:66139704 original size:51 final size:51
Alignment explanation
Indices: 66139633--66139742 Score: 166
Period size: 51 Copynumber: 2.2 Consensus size: 51
66139623 CTGATCACAT
*
66139633 TTATCATTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
* * * *
66139684 TTATCACTTGTCACTGATCAGGTAAGTGTGGCTGAGGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
*
66139735 TTGTCACT
1 TTATCACT
66139743 GATCAGAAGT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
Found at i:66142366 original size:60 final size:59
Alignment explanation
Indices: 66142300--66142454 Score: 170
Period size: 60 Copynumber: 2.6 Consensus size: 59
66142290 TAATAAGATT
* * *
66142300 ATTATTAAATATAATTTAATAAAAATATTA-ATAAGTAATTAATTATATT-TTAACATAATT
1 ATTATTAAATATAATTTAATAAAAATAATATATAA-T--TTAATAATATTCTTAACATAATA
* * * *
66142360 TTTATTAAATACAATTTTATAAAAATAATATATAATTTAATAATATTCTTAATATAATA
1 ATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAATATTCTTAACATAATA
* *
66142419 ATTATTAAAATATAAATTAATAAAAATTATAATATA
1 ATTATT-AAATATAATTTAATAAAAATAAT-ATATA
66142455 TAATATTAGA
Statistics
Matches: 79, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
58 10 0.13
59 14 0.18
60 46 0.58
61 9 0.11
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.44
Consensus pattern (59 bp):
ATTATTAAATATAATTTAATAAAAATAATATATAATTTAATAATATTCTTAACATAATA
Found at i:66144409 original size:2 final size:2
Alignment explanation
Indices: 66144402--66144427 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
66144392 GAAAGGGGAT
66144402 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
66144428 TAGAGACTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:66149612 original size:19 final size:20
Alignment explanation
Indices: 66149590--66149634 Score: 74
Period size: 19 Copynumber: 2.3 Consensus size: 20
66149580 ACAAAATATT
66149590 TATAAACATAAAT-AAAATA
1 TATAAACATAAATAAAAATA
*
66149609 TATAAATATAAATAAAAATA
1 TATAAACATAAATAAAAATA
66149629 TATAAA
1 TATAAA
66149635 AGAACTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 12 0.50
20 12 0.50
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (20 bp):
TATAAACATAAATAAAAATA
Found at i:66149643 original size:29 final size:29
Alignment explanation
Indices: 66149567--66149643 Score: 75
Period size: 29 Copynumber: 2.7 Consensus size: 29
66149557 TATAATTTAT
* * **
66149567 AATATATAAATTAACAAAATATTTATAAA
1 AATATATAAAATAACTAAATATAAATAAA
* *
66149596 CATAAATAAAATATA-TAAATATAAATAAA
1 AATATATAAAATA-ACTAAATATAAATAAA
*
66149625 AATATATAAAAGAACTAAA
1 AATATATAAAATAACTAAA
66149644 AAGCATATCT
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
28 1 0.03
29 35 0.95
30 1 0.03
ACGTcount: A:0.66, C:0.04, G:0.01, T:0.29
Consensus pattern (29 bp):
AATATATAAAATAACTAAATATAAATAAA
Found at i:66149645 original size:20 final size:20
Alignment explanation
Indices: 66149599--66149645 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
66149589 TTATAAACAT
*
66149599 AAAT-AAAATATATAAATAT
1 AAATAAAAATATATAAATAG
66149618 AAATAAAAATATATAAA-AG
1 AAATAAAAATATATAAATAG
*
66149637 AACTAAAAA
1 AAATAAAAA
66149646 GCATATCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (20 bp):
AAATAAAAATATATAAATAG
Found at i:66150229 original size:40 final size:40
Alignment explanation
Indices: 66150171--66150249 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
66150161 AAGAATAAAC
66150171 TACATATTATGCTATGTTTGGATAAACAATAATTGAAAGT
1 TACATATTATGCTATGTTTGGATAAACAATAATTGAAAGT
*
66150211 TACATATTATGCTTTGTTTGGATAAACAATAATTGAAAG
1 TACATATTATGCTATGTTTGGATAAACAATAATTGAAAG
66150250 AATGTTGTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (40 bp):
TACATATTATGCTATGTTTGGATAAACAATAATTGAAAGT
Found at i:66153868 original size:11 final size:11
Alignment explanation
Indices: 66153827--66153874 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
66153817 ATTAGATAAA
66153827 TATTATTTTAT
1 TATTATTTTAT
* *
66153838 TAATACTTTAAT
1 TATTA-TTTTAT
*
66153850 AATATATTTTAT
1 TAT-TATTTTAT
66153862 TATTATTTTAT
1 TATTATTTTAT
66153873 TA
1 TA
66153875 GTATATAAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
11 14 0.48
12 13 0.45
13 2 0.07
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.62
Consensus pattern (11 bp):
TATTATTTTAT
Found at i:66156001 original size:46 final size:46
Alignment explanation
Indices: 66155949--66156130 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
66155939 AGTGTGCTCT
* *
66155949 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
66155995 CTGATATGAGATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
66156041 GTGACATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
66156087 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
66156131 TCACGTCAAA
Statistics
Matches: 122, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 121 0.99
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:66156436 original size:23 final size:25
Alignment explanation
Indices: 66156391--66156437 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
66156381 AATAAATATA
*
66156391 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
66156416 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
66156438 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:66163427 original size:12 final size:12
Alignment explanation
Indices: 66163410--66163436 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
66163400 ATATGGTTTA
66163410 TTCAAGGATTTG
1 TTCAAGGATTTG
66163422 TTCAAGGATTTG
1 TTCAAGGATTTG
66163434 TTC
1 TTC
66163437 CACAGTGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.11, G:0.22, T:0.44
Consensus pattern (12 bp):
TTCAAGGATTTG
Found at i:66165060 original size:26 final size:26
Alignment explanation
Indices: 66165030--66165083 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
66165020 TTATTGTAGG
66165030 ACACTTTCAACACATAATTTTATTTT
1 ACACTTTCAACACATAATTTTATTTT
66165056 ACACTTTCAACACATAATTTTATTTT
1 ACACTTTCAACACATAATTTTATTTT
66165082 AC
1 AC
66165084 TTTTCTTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.35, C:0.20, G:0.00, T:0.44
Consensus pattern (26 bp):
ACACTTTCAACACATAATTTTATTTT
Found at i:66166633 original size:12 final size:12
Alignment explanation
Indices: 66166616--66166640 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
66166606 GATTGAAAAC
66166616 TAACGACTTAGA
1 TAACGACTTAGA
66166628 TAACGACTTAGA
1 TAACGACTTAGA
66166640 T
1 T
66166641 GACTCTGTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (12 bp):
TAACGACTTAGA
Found at i:66167834 original size:27 final size:26
Alignment explanation
Indices: 66167781--66167856 Score: 89
Period size: 27 Copynumber: 2.7 Consensus size: 26
66167771 CTCTCTCAAC
66167781 AAAAATTACAAAAAAATTCAAAATATTTAT
1 AAAAATT--AAAAAAATT-AAAATA-TTAT
* *
66167811 AAAAATTAAAAAAATTATATTATTAT
1 AAAAATTAAAAAAATTAAAATATTAT
66167837 AAAAATTTAAAAAAATTAAA
1 AAAAA-TTAAAAAAATTAAA
66167857 GGATATATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
26 9 0.21
27 17 0.40
28 9 0.21
30 7 0.17
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.32
Consensus pattern (26 bp):
AAAAATTAAAAAAATTAAAATATTAT
Found at i:66167863 original size:26 final size:26
Alignment explanation
Indices: 66167807--66167867 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
66167797 TTCAAAATAT
* **
66167807 TTATAAAAATTAAAAAAATTATATTA
1 TTATAAAAATTAAAAAAATTAAAGGA
66167833 TTATAAAAATTTAAAAAAATTAAAGGA
1 TTATAAAAA-TTAAAAAAATTAAAGGA
66167860 TATATAAA
1 T-TATAAA
66167868 GAAAGTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 9 0.30
27 15 0.50
28 6 0.20
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (26 bp):
TTATAAAAATTAAAAAAATTAAAGGA
Found at i:66169558 original size:20 final size:20
Alignment explanation
Indices: 66169521--66169558 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
66169511 TGATGGGGAG
*
66169521 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
66169541 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
66169559 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:66171513 original size:46 final size:46
Alignment explanation
Indices: 66171461--66171730 Score: 398
Period size: 46 Copynumber: 5.9 Consensus size: 46
66171451 TGCTCTCTGT
*
66171461 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAGCCTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
66171507 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
66171553 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* **
66171599 TATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAATGTGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
*** * * *
66171645 TATGAAATGAACAAAACCGTGGTTGAAAGATACCATGGCAACATGA
1 TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
* * * *
66171691 TA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 TATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
66171731 TCATGTCAAA
Statistics
Matches: 204, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 1 0.00
46 203 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
TATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGA
Found at i:66173611 original size:14 final size:14
Alignment explanation
Indices: 66173592--66173621 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
66173582 ACCAACTACT
66173592 TATCAGTAGCATTC
1 TATCAGTAGCATTC
66173606 TATCAGTAGCATTC
1 TATCAGTAGCATTC
66173620 TA
1 TA
66173622 CCTTAATTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (14 bp):
TATCAGTAGCATTC
Found at i:66177910 original size:14 final size:14
Alignment explanation
Indices: 66177891--66177935 Score: 54
Period size: 14 Copynumber: 3.0 Consensus size: 14
66177881 AATAAATTTT
66177891 TTAAAAATAAGAAA
1 TTAAAAATAAGAAA
*
66177905 TTAAAAATAAAAATTA
1 TTAAAAATAAGAA--A
66177921 TTAAAAATAGAGAAA
1 TTAAAAATA-AGAAA
66177936 ACCAATTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 12 0.46
15 1 0.04
16 10 0.38
17 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (14 bp):
TTAAAAATAAGAAA
Found at i:66178944 original size:18 final size:19
Alignment explanation
Indices: 66178921--66178958 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
66178911 TTCTTTGAAT
*
66178921 TATTTCTACTATTGT-TTA
1 TATTTCAACTATTGTATTA
*
66178939 TATTTCAATTATTGTATTA
1 TATTTCAACTATTGTATTA
66178958 T
1 T
66178959 CTTTTTTAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.26, C:0.08, G:0.05, T:0.61
Consensus pattern (19 bp):
TATTTCAACTATTGTATTA
Found at i:66179124 original size:19 final size:21
Alignment explanation
Indices: 66179088--66179129 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
66179078 AAAGTTATTG
* *
66179088 TTTGATTTAAGT-TTTTAATA
1 TTTGATTTAAGTAATTAAATA
66179108 TTTGA-TTAAGTAATTAAATA
1 TTTGATTTAAGTAATTAAATA
66179128 TT
1 TT
66179130 AAAAAGTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.36, C:0.00, G:0.10, T:0.55
Consensus pattern (21 bp):
TTTGATTTAAGTAATTAAATA
Found at i:66184851 original size:13 final size:13
Alignment explanation
Indices: 66184833--66184864 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
66184823 GGGTCTTTTT
66184833 TTCGAGTTTCGAG
1 TTCGAGTTTCGAG
66184846 TTCGAG-TTCGAG
1 TTCGAGTTTCGAG
66184858 TT-GAGTT
1 TTCGAGTT
66184865 GAATTTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.17
12 9 0.50
13 6 0.33
ACGTcount: A:0.16, C:0.12, G:0.31, T:0.41
Consensus pattern (13 bp):
TTCGAGTTTCGAG
Found at i:66190626 original size:80 final size:81
Alignment explanation
Indices: 66190473--66190626 Score: 186
Period size: 80 Copynumber: 1.9 Consensus size: 81
66190463 ATAATATACC
* * * * *
66190473 TATTTACAATCTAAGAAAAAAAATAAAAAAATTTGCGTTATTGTATTCTATTGTATTTCATATCA
1 TATTTACAATCTAACAAAAAAAATAAAAAAATTTGCGTTATTGTATTCTACTATATTTCACATAA
*
66190538 ATAGTATATACTTATT
66 ATAATATATACTTATT
* * ** *
66190554 TATTTACAATCT-ACAAAAACAAT-AAAAATTTTGTTTATATTGTATTCTACTATATTTTACATA
1 TATTTACAATCTAACAAAAAAAATAAAAAAATTTGCGT-TATTGTATTCTACTATATTTCACATA
66190617 AATAATATAT
65 AATAATATAT
66190627 CAATATTTAC
Statistics
Matches: 61, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
79 10 0.16
80 39 0.64
81 12 0.20
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (81 bp):
TATTTACAATCTAACAAAAAAAATAAAAAAATTTGCGTTATTGTATTCTACTATATTTCACATAA
ATAATATATACTTATT
Found at i:66190634 original size:80 final size:81
Alignment explanation
Indices: 66190473--66190650 Score: 179
Period size: 80 Copynumber: 2.3 Consensus size: 81
66190463 ATAATATACC
* * * * *
66190473 TATTTACAATCTAAGAAAAAAAATAAAAAAATTTGCGTTATTGTATTCTATTGTATTTCATATCA
1 TATTTACAATCTAACAAAAAAAATAAAAAAATTTGCGTTATTGTATTCTACTATATTTCACATAA
* *
66190538 ATAGTATATACTTATT
66 ATAATATATACATATT
* * ** *
66190554 TATTTACAATCT-ACAAAAACAAT-AAAAATTTTGTTTATATTGTATTCTACTATATTTTACATA
1 TATTTACAATCTAACAAAAAAAATAAAAAAATTTGCGT-TATTGTATTCTACTATATTTCACATA
66190617 AATAATATAT-CA-A--
65 AATAATATATACATATT
* *
66190630 TATTTACAATTTACCAAAAAA
1 TATTTACAATCTAACAAAAAA
66190651 TGAAAAGCAA
Statistics
Matches: 80, Mismatches: 15, Indels: 8
0.78 0.15 0.08
Matches are distributed among these distances:
76 11 0.14
77 6 0.08
78 1 0.01
79 11 0.14
80 39 0.49
81 12 0.15
ACGTcount: A:0.44, C:0.10, G:0.04, T:0.41
Consensus pattern (81 bp):
TATTTACAATCTAACAAAAAAAATAAAAAAATTTGCGTTATTGTATTCTACTATATTTCACATAA
ATAATATATACATATT
Found at i:66192005 original size:23 final size:22
Alignment explanation
Indices: 66191928--66192014 Score: 56
Period size: 23 Copynumber: 3.8 Consensus size: 22
66191918 GTCACAACTG
66191928 TTATTAA-TGAA-TTTGAAAATA
1 TTATTAATTGAATTTTGAAAA-A
* **
66191949 TTATTAAGTTGATATAATTGATTAA
1 TTATTAA-TTGA-AT-TTTGAAAAA
66191974 TT-TTGAATTGAATTCTTGAAAAA
1 TTATT-AATTGAATT-TTGAAAAA
66191997 TTATTAATT-AATATTTGA
1 TTATTAATTGAAT-TTTGA
66192015 TGAACTGATT
Statistics
Matches: 51, Mismatches: 6, Indels: 17
0.69 0.08 0.23
Matches are distributed among these distances:
21 7 0.14
22 7 0.14
23 18 0.35
24 9 0.18
25 5 0.10
26 5 0.10
ACGTcount: A:0.41, C:0.01, G:0.10, T:0.47
Consensus pattern (22 bp):
TTATTAATTGAATTTTGAAAAA
Found at i:66194257 original size:14 final size:13
Alignment explanation
Indices: 66194239--66194274 Score: 54
Period size: 15 Copynumber: 2.6 Consensus size: 13
66194229 TTGAAAAAAA
66194239 AAATTAAAAATAT
1 AAATTAAAAATAT
66194252 AGAATTAAAAAATAT
1 A-AATT-AAAAATAT
66194267 AAATTAAA
1 AAATTAAA
66194275 TCTACAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 4 0.19
14 8 0.38
15 9 0.43
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (13 bp):
AAATTAAAAATAT
Found at i:66194264 original size:15 final size:14
Alignment explanation
Indices: 66194239--66194274 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
66194229 TTGAAAAAAA
66194239 AAATT-AAAAATAT
1 AAATTAAAAAATAT
66194252 AGAATTAAAAAATAT
1 A-AATTAAAAAATAT
66194267 AAATTAAA
1 AAATTAAA
66194275 TCTACAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 11 0.52
15 9 0.43
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (14 bp):
AAATTAAAAAATAT
Found at i:66194803 original size:13 final size:13
Alignment explanation
Indices: 66194747--66194800 Score: 65
Period size: 13 Copynumber: 4.2 Consensus size: 13
66194737 GGTTAGTTTG
*
66194747 ATTAATTAATTCT
1 ATTAATTAATTTT
* *
66194760 ATTAATTGATTTA
1 ATTAATTAATTTT
*
66194773 ATCAATTAATTTT
1 ATTAATTAATTTT
66194786 ATTAATT-ATTTT
1 ATTAATTAATTTT
66194798 ATT
1 ATT
66194801 TAAAAGTGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
12 8 0.24
13 26 0.76
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (13 bp):
ATTAATTAATTTT
Found at i:66201122 original size:51 final size:51
Alignment explanation
Indices: 66201037--66201184 Score: 190
Period size: 51 Copynumber: 2.9 Consensus size: 51
66201027 CGGATACACG
* * *
66201037 GTGGCCTGCACATAGTACCAC-CGTTGTAGCCAAAGCTATTTTATTTACAAA
1 GTGGCCTTCACATAGTACCACAC-TTGTATCCAAAGCTATTTTATTCACAAA
* * * *
66201088 GTGGGCTTTACATAGTACCACACTTGTTTCCAAAGCTATTATATTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTATCCAAAGCTATTTTATTCACAAA
* * *
66201139 GTGGCCTTCACATAGCACTACACTTGTGTCCAAAGCTATTTTATTC
1 GTGGCCTTCACATAGTACCACACTTGTATCCAAAGCTATTTTATTC
66201185 TTAAGGTTTA
Statistics
Matches: 83, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
51 82 0.99
52 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (51 bp):
GTGGCCTTCACATAGTACCACACTTGTATCCAAAGCTATTTTATTCACAAA
Found at i:66201240 original size:28 final size:28
Alignment explanation
Indices: 66201208--66201324 Score: 151
Period size: 24 Copynumber: 4.5 Consensus size: 28
66201198 GGGAAATTTC
*
66201208 TCACTTAGCACAATGCTATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
66201236 TCACTTAG----ATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
66201260 TCACTTAGCACACTGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
*
66201288 TCACTTAG----ATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATT
66201312 TCACTTAGCACAA
1 TCACTTAGCACAA
66201325 CGTCATATCC
Statistics
Matches: 77, Mismatches: 4, Indels: 16
0.79 0.04 0.16
Matches are distributed among these distances:
24 45 0.58
28 32 0.42
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (28 bp):
TCACTTAGCACAATGCCATGGACTTATT
Found at i:66201264 original size:52 final size:52
Alignment explanation
Indices: 66201208--66201324 Score: 207
Period size: 52 Copynumber: 2.2 Consensus size: 52
66201198 GGGAAATTTC
*
66201208 TCACTTAGCACAATGCTATGGACTTATTTCACTTAGATGCCATGGACTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
* *
66201260 TCACTTAGCACACTGCCATGGACTTATTTCACTTAGATGCCATGGTCTTATT
1 TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
66201312 TCACTTAGCACAA
1 TCACTTAGCACAA
66201325 CGTCATATCC
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (52 bp):
TCACTTAGCACAATGCCATGGACTTATTTCACTTAGATGCCATGGACTTATT
Found at i:66202830 original size:13 final size:13
Alignment explanation
Indices: 66202814--66202851 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
66202804 AAGCAGCTAT
66202814 TAAAATTTTATAA
1 TAAAATTTTATAA
* *
66202827 TAAAA-TTCAAAA
1 TAAAATTTTATAA
66202839 TAAAATTTTATAA
1 TAAAATTTTATAA
66202852 GAATGAACTT
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
12 10 0.50
13 10 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAAATTTTATAA
Found at i:66204281 original size:17 final size:18
Alignment explanation
Indices: 66204259--66204292 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
66204249 CTTAATGAAA
66204259 AAATAAAATAC-AAAAAG
1 AAATAAAATACGAAAAAG
66204276 AAATAAAATACGAAAAA
1 AAATAAAATACGAAAAA
66204293 ATAACTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (18 bp):
AAATAAAATACGAAAAAG
Found at i:66204291 original size:32 final size:32
Alignment explanation
Indices: 66204224--66204296 Score: 87
Period size: 32 Copynumber: 2.3 Consensus size: 32
66204214 AAAATAGTAT
* **
66204224 AAAAAATAAAATACTAAAAGAATATCTTAATG
1 AAAAAATAAAATACAAAAAGAATATCAAAATG
66204256 AAAAAATAAAATACAAAAAGAA-AT-AAAATACG
1 AAAAAATAAAATACAAAAAGAATATCAAAAT--G
66204288 AAAAAATAA
1 AAAAAATAA
66204297 CTTTTTTGGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
30 3 0.08
31 2 0.06
32 31 0.86
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.18
Consensus pattern (32 bp):
AAAAAATAAAATACAAAAAGAATATCAAAATG
Found at i:66204354 original size:13 final size:13
Alignment explanation
Indices: 66204336--66204365 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
66204326 TTTTTACTAA
66204336 ATATGAAAATAAT
1 ATATGAAAATAAT
66204349 ATATGAAAATAAT
1 ATATGAAAATAAT
66204362 ATAT
1 ATAT
66204366 TTTAGAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (13 bp):
ATATGAAAATAAT
Found at i:66205032 original size:41 final size:41
Alignment explanation
Indices: 66204987--66205069 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
66204977 TTAAAATTAA
66204987 TAACCGAAATTTATTTTGAAATTACAGGCATCGCAATGGCT
1 TAACCGAAATTTATTTTGAAATTACAGGCATCGCAATGGCT
66205028 TAACCGAAATTTATTTTGAAATTACAGGCATCGCAATGGCT
1 TAACCGAAATTTATTTTGAAATTACAGGCATCGCAATGGCT
66205069 T
1 T
66205070 CATTGATTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
Consensus pattern (41 bp):
TAACCGAAATTTATTTTGAAATTACAGGCATCGCAATGGCT
Found at i:66206451 original size:7 final size:7
Alignment explanation
Indices: 66206435--66206540 Score: 167
Period size: 7 Copynumber: 15.1 Consensus size: 7
66206425 TTATCTAATC
*
66206435 AGTGACA
1 AGTGATA
66206442 AGTGATA
1 AGTGATA
66206449 AGTGATA
1 AGTGATA
66206456 AGTGATA
1 AGTGATA
*
66206463 AGTGACA
1 AGTGATA
66206470 AGTGATA
1 AGTGATA
66206477 AGTGATA
1 AGTGATA
66206484 AGTGATA
1 AGTGATA
66206491 AGTGATA
1 AGTGATA
66206498 AGTGATA
1 AGTGATA
66206505 AGTGATA
1 AGTGATA
66206512 AGTGATA
1 AGTGATA
*
66206519 AGTGACA
1 AGTGATA
* *
66206526 AATGACA
1 AGTGATA
66206533 AGTGATA
1 AGTGATA
66206540 A
1 A
66206541 ATGTGATCCG
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 92 1.00
ACGTcount: A:0.44, C:0.04, G:0.27, T:0.25
Consensus pattern (7 bp):
AGTGATA
Found at i:66209003 original size:19 final size:20
Alignment explanation
Indices: 66208976--66209013 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
66208966 TGATTTTGGT
66208976 TTTTATTTGTGTTT-TTTTTA
1 TTTTATTTGT-TTTATTTTTA
66208996 TTTT-TTTGTTTTATTTTT
1 TTTTATTTGTTTTATTTTT
66209014 GGTTTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.18
19 10 0.59
20 4 0.24
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.84
Consensus pattern (20 bp):
TTTTATTTGTTTTATTTTTA
Found at i:66209035 original size:28 final size:27
Alignment explanation
Indices: 66208975--66209038 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
66208965 CTGATTTTGG
* * *
66208975 TTTTTATTTGTGTTTTTTTTATTTTTT
1 TTTTTATTTGTGGTTTTTTAATTTTAT
*
66209002 TGTTTTATTTTTGGTTTTTTAATTTCTAT
1 T-TTTTATTTGTGGTTTTTTAATTT-TAT
66209031 TTTTTATT
1 TTTTTATT
66209039 CCAATGGGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 1 0.03
28 27 0.87
29 3 0.10
ACGTcount: A:0.11, C:0.02, G:0.08, T:0.80
Consensus pattern (27 bp):
TTTTTATTTGTGGTTTTTTAATTTTAT
Found at i:66210389 original size:20 final size:20
Alignment explanation
Indices: 66210351--66210398 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
66210341 TAAATTCTAA
* **
66210351 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
66210371 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
66210391 AAA-ATAAA
1 AAAGATAAA
66210399 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Done.