Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 210 of 259
Found at i:66585675 original size:84 final size:84
Alignment explanation
Indices: 66585578--66585778 Score: 357
Period size: 84 Copynumber: 2.4 Consensus size: 84
66585568 TCAACCATGG
* * *
66585578 TCTTACAACCATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTA
*
66585643 CACACATGTTGCCATGGTA
66 CACACAGGTTGCCATGGTA
66585662 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTA
66585727 CACACAGGTTGCCATGGTA
66 CACACAGGTTGCCATGGTA
*
66585746 TCTTTCAACCATGGTCTTACACATTTTATATCA
1 TCTTTCAACCATGGTCTTACACATTTCATATCA
66585779 GAGAGCACAC
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 112 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.36
Consensus pattern (84 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTGCCATGGTATCTTTCAACCATGGTCTTA
CACACAGGTTGCCATGGTA
Found at i:66589021 original size:5 final size:5
Alignment explanation
Indices: 66589011--66589042 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
66589001 CATTCTGTGA
66589011 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
66589043 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:66589036 original size:9 final size:9
Alignment explanation
Indices: 66589012--66589042 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
66589002 ATTCTGTGAA
66589012 AAATAAAAT
1 AAATAAAAT
66589021 AAAATAAAAT
1 -AAATAAAAT
66589031 AAATAAAAT
1 AAATAAAAT
66589040 AAA
1 AAA
66589043 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:66596764 original size:18 final size:18
Alignment explanation
Indices: 66596741--66596792 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
66596731 AAAATGTGAG
*
66596741 AAATGATATTCACATTTT
1 AAATGATATTCACATTTC
* *
66596759 AAATGATGTTCAGATTTC
1 AAATGATATTCACATTTC
*
66596777 AAATGATTTTCACATT
1 AAATGATATTCACATT
66596793 GATGGGAACG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.42
Consensus pattern (18 bp):
AAATGATATTCACATTTC
Found at i:66597333 original size:72 final size:72
Alignment explanation
Indices: 66597216--66597527 Score: 380
Period size: 72 Copynumber: 4.3 Consensus size: 72
66597206 CAATGCTAAA
*
66597216 CTAGTTTTATCAATAGTTA-TTTATGTTTGGTTTTTGGATATTGAATTTTTGTTCTACTTATTTA
1 CTAGTTTTATCAATAG-TAGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTA
66597280 TGTGTAAT
65 TGTGTAAT
* * * *
66597288 CTAGTTTTATCAATGGCAGTTTATGTTTGGTTTTTAGATATTGAATTTATATTCTACTTATTTAT
1 CTAGTTTTATCAATAGTAGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
66597353 GTGTAAT
66 GTGTAAT
* * * * * *
66597360 CTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATGTTGAATTTATGGTCTAATTATTTAT
1 CTAGTTTTATCAATAGTAGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
**
66597425 GCT-TAGGG
66 G-TGTA-AT
* * * *
66597433 CTAGTTTTATCAATAATTGTTTATGTTTGATTTTTGGATATTAAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTAGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
66597498 ACT-AAAT
66 -GTGTAAT
*
66597505 -TAGTTTTATCAATAGTTGTTTAT
1 CTAGTTTTATCAATAGTAGTTTAT
66597528 ATATGATTTT
Statistics
Matches: 206, Mismatches: 30, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
71 23 0.11
72 123 0.60
73 60 0.29
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.54
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTAGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTGTAAT
Found at i:66598905 original size:9 final size:9
Alignment explanation
Indices: 66598891--66598946 Score: 76
Period size: 9 Copynumber: 6.2 Consensus size: 9
66598881 GTCAAGAAAG
*
66598891 TGATAATGA
1 TGATAACGA
66598900 TGATAACGA
1 TGATAACGA
*
66598909 TGATGACGA
1 TGATAACGA
*
66598918 TGATAATGA
1 TGATAACGA
66598927 TGATAACGA
1 TGATAACGA
*
66598936 TGATGACGA
1 TGATAACGA
66598945 TG
1 TG
66598947 CAGATTTTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (9 bp):
TGATAACGA
Found at i:66598921 original size:27 final size:27
Alignment explanation
Indices: 66598891--66598946 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
66598881 GTCAAGAAAG
66598891 TGATAATGATGATAACGATGATGACGA
1 TGATAATGATGATAACGATGATGACGA
66598918 TGATAATGATGATAACGATGATGACGA
1 TGATAATGATGATAACGATGATGACGA
66598945 TG
1 TG
66598947 CAGATTTTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.27, T:0.27
Consensus pattern (27 bp):
TGATAATGATGATAACGATGATGACGA
Found at i:66599050 original size:135 final size:135
Alignment explanation
Indices: 66598808--66599056 Score: 482
Period size: 135 Copynumber: 1.8 Consensus size: 135
66598798 CGGTCGAAAT
66598808 GATGCAGATTTTATGGAATACGAAGATATTAATAGGGCATATGAGAATATTATTGATTCAGAAAA
1 GATGCAGATTTTATGGAATACGAAGATATTAATAGGGCATATGAGAATATTATTGATTCAGAAAA
66598873 TGCGCATGGTCAAGAAAGTGATAATGATGATAACGATGATGACGATGATAATGATGATAACGATG
66 TGCGCATGGTCAAGAAAGTGATAATGATGATAACGATGATGACGATGATAATGATGATAACGATG
66598938 ATGAC
131 ATGAC
66598943 GATGCAGATTTTATGGAATACGAAGATATTAATAGGGCATATGAGAATATTATTGATTCAGAAAA
1 GATGCAGATTTTATGGAATACGAAGATATTAATAGGGCATATGAGAATATTATTGATTCAGAAAA
66599008 TGCGCATGGT-ATAGAAAGTGATAATGATGATAACGATGATGACGATGAT
66 TGCGCATGGTCA-AGAAAGTGATAATGATGATAACGATGATGACGATGAT
66599057 GATGGTAATG
Statistics
Matches: 113, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
134 1 0.01
135 112 0.99
ACGTcount: A:0.40, C:0.08, G:0.24, T:0.28
Consensus pattern (135 bp):
GATGCAGATTTTATGGAATACGAAGATATTAATAGGGCATATGAGAATATTATTGATTCAGAAAA
TGCGCATGGTCAAGAAAGTGATAATGATGATAACGATGATGACGATGATAATGATGATAACGATG
ATGAC
Found at i:66602397 original size:27 final size:27
Alignment explanation
Indices: 66602025--66602507 Score: 562
Period size: 27 Copynumber: 17.9 Consensus size: 27
66602015 AAAGTACTCC
66602025 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
66602052 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * * *
66602079 CAATTTTTAAAATTACCATTTTATCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
66602106 CGATTTACAGAATTACCGTTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
66602133 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
66602160 CGATTTACAGAATTACTATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* **
66602187 -TAGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
66602214 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** *
66602241 CGATTTGTAAAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66602268 TGATTTATAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
*
66602295 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
66602322 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
**
66602349 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
*
66602376 CGACTTACAGAATTACCGTTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
* ** * *
66602403 CAATTTGTAAAATTACCATTTTACCCT
1 CGATTTACAGAATTACCGTTTTACCCT
** * * *
66602430 TAATTTACAGAATTACTGGTTTACCTT
1 CGATTTACAGAATTACCGTTTTACCCT
* *
66602457 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTACAGAATTACCGTTTTACCCT
**
66602484 TAATTTACAGAATTACCGTTTTAC
1 CGATTTACAGAATTACCGTTTTAC
66602508 ACTTGATTGT
Statistics
Matches: 388, Mismatches: 58, Indels: 20
0.83 0.12 0.04
Matches are distributed among these distances:
26 5 0.01
27 378 0.97
28 5 0.01
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTACAGAATTACCGTTTTACCCT
Found at i:66602558 original size:27 final size:27
Alignment explanation
Indices: 66602520--66602713 Score: 203
Period size: 27 Copynumber: 7.2 Consensus size: 27
66602510 TTGATTGTGA
66602520 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
66602547 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
66602574 AATTACTGAAATACCCTTATAGGATAG
1 AATTACTGAAATACCCCTGTAGGGTAG
**
66602601 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
66602628 AATTA-TCG-AATACCCTTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* **
66602654 AAATACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * ** * *
66602681 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
66602708 AATTAC
1 AATTAC
66602714 CATTTTGCCC
Statistics
Matches: 138, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 20 0.14
27 118 0.86
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:66602584 original size:54 final size:54
Alignment explanation
Indices: 66602520--66602715 Score: 243
Period size: 54 Copynumber: 3.6 Consensus size: 54
66602510 TTGATTGTGA
* * ** *
66602520 AATTACTGAAATACCCCTGTAGGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
66602574 AATTACTGAAATACCCTTATAGGATAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* *
66602628 AATTA-TCG-AATACCCTTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
* * * * *
66602681 AATTACCGAGATACCTTTGTGGGGTAAAATTACCA
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCA
66602716 TTTTGCCCCT
Statistics
Matches: 121, Mismatches: 18, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
53 48 0.40
54 73 0.60
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
Found at i:66602663 original size:53 final size:52
Alignment explanation
Indices: 66602555--66602700 Score: 195
Period size: 53 Copynumber: 2.7 Consensus size: 52
66602545 AGAATTTCTG
* * *
66602555 AAATACCCCTATAGGGTAGAATTACTGAAATACCCTTATAGGATAGAATTACCA
1 AAATACCCCTGTAGGGTAGAATTAC-G-AATACCCTTGTAGGATAGAAATACCA
66602609 AAATACCCCTGTAGGGTAGAATTATCGAATACCCTTGTAAGG-TAGAAATACCA
1 AAATACCCCTGTAGGGTAGAATTA-CGAATACCCTTGT-AGGATAGAAATACCA
*
66602662 AAATACCCCTGTAGGGTAGAATTACCGAGATACCTTTGT
1 AAATACCCCTGTAGGGTAGAATTA-CGA-ATACCCTTGT
66602701 GGGGTAAAAT
Statistics
Matches: 84, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
53 47 0.56
54 36 0.43
55 1 0.01
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (52 bp):
AAATACCCCTGTAGGGTAGAATTACGAATACCCTTGTAGGATAGAAATACCA
Found at i:66602706 original size:80 final size:82
Alignment explanation
Indices: 66602528--66602687 Score: 218
Period size: 80 Copynumber: 2.0 Consensus size: 82
66602518 GAAATTACTG
* * ** *
66602528 AAATACCCCTGTAGGGTAGAATT-TCTGAAATACCCCTATAGGGTAGAATTACTGAAATACCCTT
1 AAATACCCCTGTAGGGTAGAATTATCTGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCT
66602592 ATAGGATAGAATTACCA
66 ATAGGATAGAATTACCA
* *
66602609 AAATACCCCTGTAGGGTAGAATTATC-G-AATACCCTTGTAAGGTAGAAATACCAAAATACCCCT
1 AAATACCCCTGTAGGGTAGAATTATCTGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCT
* *
66602672 GTAGGGTAGAATTACC
66 ATAGGATAGAATTACC
66602688 GAGATACCTT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
80 43 0.62
81 24 0.35
82 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (82 bp):
AAATACCCCTGTAGGGTAGAATTATCTGAAATACCCCTATAAGGTAGAAATACCAAAATACCCCT
ATAGGATAGAATTACCA
Found at i:66602951 original size:27 final size:26
Alignment explanation
Indices: 66602913--66602995 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
66602903 CGGAGGAAGC
*
66602913 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
66602940 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* *
66602966 GTATCTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
66602993 GTT
1 GTT
66602996 GACCGATCGA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 10 0.19
27 42 0.81
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:66603328 original size:27 final size:27
Alignment explanation
Indices: 66603298--66603374 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
66603288 TATTCTGTTA
* *
66603298 GGTGGCTTTGCCACATTATCTG-ATTCT
1 GGTGGCTCTGCCACAATATCTGTATT-T
66603325 GGTGGCTCTGCCACAATATCTGTATTT
1 GGTGGCTCTGCCACAATATCTGTATTT
* * *
66603352 GGTGACTCTGTCACGATATCTGT
1 GGTGGCTCTGCCACAATATCTGT
66603375 TCTAGCAGCC
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 41 0.93
28 3 0.07
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (27 bp):
GGTGGCTCTGCCACAATATCTGTATTT
Found at i:66603506 original size:6 final size:6
Alignment explanation
Indices: 66603497--66603689 Score: 175
Period size: 6 Copynumber: 31.8 Consensus size: 6
66603487 TTACATTCAC
* *
66603497 ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
66603546 -TTACTA ATACTA ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG
1 ATT-CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG
* * *
66603594 ATTCTG -TCACCTA ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG -TTACTA
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG
*
66603643 ATAT-TG ATTTTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 AT-TCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
66603690 CATTTTGGTT
Statistics
Matches: 156, Mismatches: 15, Indels: 32
0.77 0.07 0.16
Matches are distributed among these distances:
5 11 0.07
6 132 0.85
7 10 0.06
8 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:66603612 original size:37 final size:36
Alignment explanation
Indices: 66603570--66603689 Score: 137
Period size: 37 Copynumber: 3.5 Consensus size: 36
66603560 TCTGATTCTG
66603570 ATTCTG-TTACTGATTCTGATTCTGATTCTGTCACCTA
1 ATTCTGATT-CTGATTCTGATTCTGATTCTGTCA-CTA
*
66603607 ATTCTGATTCTGATTCTGATTCTGATTCTGTTACTA
1 ATTCTGATTCTGATTCTGATTCTGATTCTGTCACTA
* * *
66603643 A---T-A-T-TGATTTTGATTCTGATTCTGTTACTG
1 ATTCTGATTCTGATTCTGATTCTGATTCTGTCACTA
66603673 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
66603690 CATTTTGGTT
Statistics
Matches: 72, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
30 25 0.35
31 1 0.01
32 1 0.01
33 2 0.03
34 1 0.01
35 1 0.01
36 10 0.14
37 29 0.40
38 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.14, T:0.50
Consensus pattern (36 bp):
ATTCTGATTCTGATTCTGATTCTGATTCTGTCACTA
Found at i:66603642 original size:85 final size:87
Alignment explanation
Indices: 66603497--66603689 Score: 293
Period size: 85 Copynumber: 2.2 Consensus size: 87
66603487 TTACATTCAC
66603497 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATAC-TA-AT
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACATATAT
66603560 TCTGATTCTGATTCTGTTACTG
66 TCTGATTCTGATTCTGTTACTG
**
66603582 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATT-CTGTTACTAATA
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTG-TTACTAATAC--ATA
*
66603646 TTGATTTTGATTCTGATTCTGTTACTG
63 -T-ATTCTGATTCTGATTCTGTTACTG
66603673 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
66603690 CATTTTGGTT
Statistics
Matches: 98, Mismatches: 3, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
85 54 0.55
86 2 0.02
88 2 0.02
91 40 0.41
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (87 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACATATAT
TCTGATTCTGATTCTGTTACTG
Found at i:66603657 original size:91 final size:85
Alignment explanation
Indices: 66603497--66603689 Score: 305
Period size: 91 Copynumber: 2.2 Consensus size: 85
66603487 TTACATTCAC
66603497 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
1 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
66603562 TGATTCTGATTCTGTTACTG
66 TGATTCTGATTCTGTTACTG
*
66603582 ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGATTCTGTTACTAATAT
1 ATTCTGATTCTGATTCTGTCACCT-A-----ATTCTGATTCTGATTCTGATTCTGTTACTAATAC
* *
66603647 TGATTTTGATTCTGATTCTGTTACTG
60 TAATTCTGATTCTGATTCTGTTACTG
66603673 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
66603690 CATTTTGGTT
Statistics
Matches: 99, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
85 24 0.24
86 1 0.01
91 74 0.75
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (85 bp):
ATTCTGATTCTGATTCTGTCACCTAATTCTGATTCTGATTCTGATTCTGTTACTAATACTAATTC
TGATTCTGATTCTGTTACTG
Found at i:66603710 original size:30 final size:30
Alignment explanation
Indices: 66603497--66603689 Score: 239
Period size: 30 Copynumber: 6.4 Consensus size: 30
66603487 TTACATTCAC
*
66603497 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTA-CTAATTCTG
* *
66603528 ATTCTGATTCTGATTCTGTTACTAATACTA
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
*
66603558 ATTCTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
* * *
66603588 ATTCTGATTCTG-TCACCTAATT-CTGATTCTG
1 ATTCTGATTCTGAT--TCT-GTTACTAATTCTG
66603619 ATTCTGATTCTGATTCTGTTACTAATAT-TG
1 ATTCTGATTCTGATTCTGTTACTAAT-TCTG
* *
66603649 ATTTTGATTCTGATTCTGTTACTGATTCTG
1 ATTCTGATTCTGATTCTGTTACTAATTCTG
66603679 ATTCTGATTCT
1 ATTCTGATTCT
66603690 CATTTTGGTT
Statistics
Matches: 141, Mismatches: 14, Indels: 15
0.83 0.08 0.09
Matches are distributed among these distances:
29 4 0.03
30 90 0.64
31 44 0.31
32 3 0.02
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTTACTAATTCTG
Found at i:66605281 original size:31 final size:29
Alignment explanation
Indices: 66605208--66605281 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
66605198 ACAAAATAAT
66605208 AACATAAGTGACTAAAACGTAACATTTCA
1 AACATAAGTGACTAAAACGTAACATTTCA
* *
66605237 AACATAAGAGACTAAAATGTAAC-TTGATGCA
1 AACATAAGTGACTAAAACGTAACATT--T-CA
*
66605268 AACAAAAGTGACTA
1 AACATAAGTGACTA
66605282 TTTTTGTAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
28 2 0.05
29 21 0.55
30 1 0.03
31 14 0.37
ACGTcount: A:0.50, C:0.15, G:0.14, T:0.22
Consensus pattern (29 bp):
AACATAAGTGACTAAAACGTAACATTTCA
Found at i:66605592 original size:13 final size:13
Alignment explanation
Indices: 66605576--66605626 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
66605566 TTTAAACCAA
66605576 ACTTTTCAAAAAC
1 ACTTTTCAAAAAC
* *
66605589 ACTTTTCAATATC
1 ACTTTTCAAAAAC
*
66605602 ACTTTTCAAAATC
1 ACTTTTCAAAAAC
66605615 ACTTTTCAAAAA
1 ACTTTTCAAAAA
66605627 TATTGCCCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.41, C:0.22, G:0.00, T:0.37
Consensus pattern (13 bp):
ACTTTTCAAAAAC
Found at i:66614069 original size:43 final size:43
Alignment explanation
Indices: 66614008--66614095 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
66613998 ATATCTTCGA
66614008 TGTTAGCTCAGAAGTATGTGAGAATGGGTTGTGAAGCTTACTT
1 TGTTAGCTCAGAAGTATGTGAGAATGGGTTGTGAAGCTTACTT
*
66614051 TGTTAGCTCAGAAGTATGTGATAATGGGTTGTGAAGCTTACTT
1 TGTTAGCTCAGAAGTATGTGAGAATGGGTTGTGAAGCTTACTT
66614094 TG
1 TG
66614096 CATATGTGCT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.25, C:0.09, G:0.30, T:0.36
Consensus pattern (43 bp):
TGTTAGCTCAGAAGTATGTGAGAATGGGTTGTGAAGCTTACTT
Found at i:66615836 original size:21 final size:21
Alignment explanation
Indices: 66615798--66615837 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
66615788 AGAGCACCAA
*
66615798 GAGCCAAAAGGAGCCAAAAAC
1 GAGCCAAAAGGAGACAAAAAC
66615819 GAGCCAAAAAGG-GACAAAA
1 GAGCC-AAAAGGAGACAAAA
66615838 CAGACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.55, C:0.20, G:0.25, T:0.00
Consensus pattern (21 bp):
GAGCCAAAAGGAGACAAAAAC
Found at i:66618250 original size:45 final size:46
Alignment explanation
Indices: 66618186--66618277 Score: 159
Period size: 45 Copynumber: 2.0 Consensus size: 46
66618176 AATTAAATTA
* *
66618186 ACCATTATTAGCAGGTTTAGTTTCA-TTTAAGTCATGCATATATAT
1 ACCATTATTAGCAGGTTTAGCTTCATTTTAAGTCAAGCATATATAT
66618231 ACCATTATTAGCAGGTTTAGCTTCATTTTAAGTCAAGCATATATAT
1 ACCATTATTAGCAGGTTTAGCTTCATTTTAAGTCAAGCATATATAT
66618277 A
1 A
66618278 TTAATGCATA
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
45 24 0.55
46 20 0.45
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (46 bp):
ACCATTATTAGCAGGTTTAGCTTCATTTTAAGTCAAGCATATATAT
Found at i:66628892 original size:19 final size:21
Alignment explanation
Indices: 66628863--66628904 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
66628853 AGCTTATCGA
66628863 AAAAGAAGAAAAA-AGAAGGG
1 AAAAGAAGAAAAAGAGAAGGG
*
66628883 AAAA-AAGAAAAAGAGAATGG
1 AAAAGAAGAAAAAGAGAAGGG
66628903 AA
1 AA
66628905 TTTTCGGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 12 0.60
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.02
Consensus pattern (21 bp):
AAAAGAAGAAAAAGAGAAGGG
Found at i:66633375 original size:45 final size:42
Alignment explanation
Indices: 66633326--66633480 Score: 134
Period size: 41 Copynumber: 3.6 Consensus size: 42
66633316 TGTTTTCATG
* *
66633326 TAAGACCACGTCTGGGACGTTGGCATCGATATATGTGGTTACGTA
1 TAAGACCATGTCTGGGACGTTGGCATCGATAT-T-T-GTTACATA
* * *
66633371 TAAGACCATGTCTGGGACATTGGCATC-ATATTTGTTTCATG
1 TAAGACCATGTCTGGGACGTTGGCATCGATATTTGTTACATA
* ** * *
66633412 TAAGACCTTGTCTGGGACAG-TGGCATCGATATGAGATAGCATG
1 TAAGACCATGTCTGGGAC-GTTGGCATCGATATTTGTTA-CATA
* * *
66633455 TAAGACCACGTTTGGAACGTTGGCAT
1 TAAGACCATGTCTGGGACGTTGGCAT
66633481 TGTACGATAT
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
41 29 0.32
42 8 0.09
43 25 0.27
44 4 0.04
45 25 0.27
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACGTTGGCATCGATATTTGTTACATA
Found at i:66633428 original size:41 final size:45
Alignment explanation
Indices: 66633311--66633443 Score: 166
Period size: 45 Copynumber: 3.0 Consensus size: 45
66633301 ACATAGTTTG
* * *
66633311 ATATGTGTTTTCATGTAAGACCACGTCTGGGACGTTGGCATCGAT
1 ATATGTGGTTTCATGTAAGACCATGTCTGGGACATTGGCATCGAT
* * *
66633356 ATATGTGGTTACGTATAAGACCATGTCTGGGACATTGGCATC-AT
1 ATATGTGGTTTCATGTAAGACCATGTCTGGGACATTGGCATCGAT
* *
66633400 AT-T-T-GTTTCATGTAAGACCTTGTCTGGGACAGTGGCATCGAT
1 ATATGTGGTTTCATGTAAGACCATGTCTGGGACATTGGCATCGAT
66633442 AT
1 AT
66633444 GAGATAGCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
41 30 0.39
42 5 0.07
43 1 0.01
44 4 0.05
45 36 0.47
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (45 bp):
ATATGTGGTTTCATGTAAGACCATGTCTGGGACATTGGCATCGAT
Found at i:66634968 original size:13 final size:14
Alignment explanation
Indices: 66634941--66634971 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
66634931 AAGTGGACAA
66634941 TTGTTAAAGCATAT
1 TTGTTAAAGCATAT
66634955 TTGTTAAA-CATAT
1 TTGTTAAAGCATAT
66634968 TTGT
1 TTGT
66634972 AATCGGCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (14 bp):
TTGTTAAAGCATAT
Found at i:66641455 original size:15 final size:15
Alignment explanation
Indices: 66641437--66641480 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
66641427 GAAGCCCAGA
66641437 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
66641452 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
66641467 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
66641481 TTTACAACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:66647406 original size:10 final size:10
Alignment explanation
Indices: 66647393--66647417 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
66647383 AAATTTTTTC
66647393 AAAGTTCGTG
1 AAAGTTCGTG
66647403 AAAGTTCGTG
1 AAAGTTCGTG
66647413 AAAGT
1 AAAGT
66647418 ACCTTAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28
Consensus pattern (10 bp):
AAAGTTCGTG
Found at i:66648422 original size:21 final size:21
Alignment explanation
Indices: 66648387--66648442 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
66648377 AAAACAAGTT
* *
66648387 TTTAGAGGCGCTTTTTAGGCC
1 TTTAGCGGCGTTTTTTAGGCC
* * *
66648408 TTTAGCGGCTTTTTTTGGGCT
1 TTTAGCGGCGTTTTTTAGGCC
66648429 TTTAGCGGCGTTTT
1 TTTAGCGGCGTTTT
66648443 GATAAGCGCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.09, C:0.16, G:0.29, T:0.46
Consensus pattern (21 bp):
TTTAGCGGCGTTTTTTAGGCC
Found at i:66648605 original size:85 final size:86
Alignment explanation
Indices: 66648490--66648676 Score: 277
Period size: 85 Copynumber: 2.2 Consensus size: 86
66648480 GTTTATGTGG
* * * *
66648490 AAAAACGCCACTATAGAACATGACCCTTAGCGGCGCTTCTCTCACAAATGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGACCCTTAGCGGCACTTCTCCCACAAATGCCGCTAAAGAACATG
66648555 ACCTTTAG-CGCGCTTCTCCC
66 ACCTTTAGTCGCGCTTCTCCC
* * *
66648575 AAAAATGCCGCTAAAGAACATGACCTTTAGCGGCACTTCTCCCTCAAATGCCGCTAAAGAACATG
1 AAAAACGCCGCTAAAGAACATGACCCTTAGCGGCACTTCTCCCACAAATGCCGCTAAAGAACATG
*
66648640 ACCTTTAGTGGCGCTTCTCCC
66 ACCTTTAGTCGCGCTTCTCCC
* *
66648661 ACAAACGCTGCTAAAG
1 AAAAACGCCGCTAAAG
66648677 GTTATTAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 66 0.73
86 24 0.27
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.21
Consensus pattern (86 bp):
AAAAACGCCGCTAAAGAACATGACCCTTAGCGGCACTTCTCCCACAAATGCCGCTAAAGAACATG
ACCTTTAGTCGCGCTTCTCCC
Found at i:66648628 original size:43 final size:43
Alignment explanation
Indices: 66648504--66648676 Score: 267
Period size: 43 Copynumber: 4.0 Consensus size: 43
66648494 ACGCCACTAT
* *
66648504 AGAACATGACCCTTAGCGGCGCTTCTCTCACAAATGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTCTCCCACAAATGCCGCTAA
*
66648547 AGAACATGACCTTTAGC-GCGCTTCTCCCAAAAATGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTCTCCCACAAATGCCGCTAA
* *
66648589 AGAACATGACCTTTAGCGGCACTTCTCCCTCAAATGCCGCTAA
1 AGAACATGACCTTTAGCGGCGCTTCTCCCACAAATGCCGCTAA
* * *
66648632 AGAACATGACCTTTAGTGGCGCTTCTCCCACAAACGCTGCTAA
1 AGAACATGACCTTTAGCGGCGCTTCTCCCACAAATGCCGCTAA
66648675 AG
1 AG
66648677 GTTATTAAAA
Statistics
Matches: 118, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 40 0.34
43 78 0.66
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGCGCTTCTCCCACAAATGCCGCTAA
Found at i:66650188 original size:32 final size:31
Alignment explanation
Indices: 66650143--66650236 Score: 136
Period size: 30 Copynumber: 3.0 Consensus size: 31
66650133 AAGAAAGAAT
*
66650143 AACAATCCATTAGATTAAATTCATTAAAAAA
1 AACAATTCATTAGATTAAATTCATTAAAAAA
* *
66650174 TAATAATTCGTTAGATTAAATTCATT-AAAAA
1 -AACAATTCATTAGATTAAATTCATTAAAAAA
*
66650205 AACAATTCATTAGATTAGATTCATTAAAAAA
1 AACAATTCATTAGATTAAATTCATTAAAAAA
66650236 A
1 A
66650237 GAATAACAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
30 22 0.40
31 11 0.20
32 22 0.40
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.33
Consensus pattern (31 bp):
AACAATTCATTAGATTAAATTCATTAAAAAA
Found at i:66653890 original size:8 final size:8
Alignment explanation
Indices: 66653879--66653965 Score: 72
Period size: 8 Copynumber: 10.9 Consensus size: 8
66653869 GACTAAAATA
66653879 TTAAATTT
1 TTAAATTT
*
66653887 TTAAGTTT
1 TTAAATTT
*
66653895 TTAAGTTT
1 TTAAATTT
66653903 TT-AATTT
1 TTAAATTT
*
66653910 TT-TATTT
1 TTAAATTT
66653917 TTAAA-TT
1 TTAAATTT
66653924 TTAAATTT
1 TTAAATTT
* *
66653932 TCAATTTT
1 TTAAATTT
66653940 TTGAAGATTT
1 TT-AA-ATTT
*
66653950 TTATCATTT
1 TTA-AATTT
66653959 TTAAATT
1 TTAAATT
66653966 AACATATAAA
Statistics
Matches: 64, Mismatches: 10, Indels: 10
0.76 0.12 0.12
Matches are distributed among these distances:
7 19 0.30
8 30 0.47
9 10 0.16
10 5 0.08
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.63
Consensus pattern (8 bp):
TTAAATTT
Found at i:66655264 original size:40 final size:39
Alignment explanation
Indices: 66655219--66655363 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 39
66655209 GCGTTTTCTG
*
66655219 AAAAGCACCGCTAATGCTCGATCTTTCGCAGCGTTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTTT-GCAGCGTTTTTCA
* ** * * *
66655259 AAAAGCGCCGCTAATTCTCGATCTATTGTGGCATTTTCCT
1 AAAAGCGCCGCTAATGCTCGATCT-TTGCAGCGTTTTTCA
* *
66655299 AAAAGCGCCGCTAGTGCTCGATCTTTAGCTGCGTTTTTCA
1 AAAAGCGCCGCTAATGCTCGATCTTT-GCAGCGTTTTTCA
66655339 AAAAGCGCCGCTAATGCTCGATCTT
1 AAAAGCGCCGCTAATGCTCGATCTT
66655364 AAAAATACCG
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 2 0.02
40 84 0.95
41 2 0.02
ACGTcount: A:0.23, C:0.26, G:0.19, T:0.31
Consensus pattern (39 bp):
AAAAGCGCCGCTAATGCTCGATCTTTGCAGCGTTTTTCA
Found at i:66655923 original size:27 final size:27
Alignment explanation
Indices: 66655870--66655924 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
66655860 GATTTTTAAT
*
66655870 TATTAAAATAATAAAAATATAATTATA
1 TATTAAAATAATAAAAATATAAATATA
*
66655897 TATTAAAATACTATAAAAT-TAAATATA
1 TATTAAAATAATA-AAAATATAAATATA
66655924 T
1 T
66655925 TTGTCTTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (27 bp):
TATTAAAATAATAAAAATATAAATATA
Found at i:66659381 original size:31 final size:29
Alignment explanation
Indices: 66659346--66659414 Score: 77
Period size: 34 Copynumber: 2.2 Consensus size: 29
66659336 CCCATATCAT
*
66659346 TTTTTA-AAAAATTTAAAATATATTTATATTA
1 TTTTTATAAAAATTTAAAAT-T-TTAATA-TA
66659377 TTTTTAATTAAAAATTTAAAATTTTAATATA
1 TTTTT-A-TAAAAATTTAAAATTTTAATATA
66659408 TTTTTAT
1 TTTTTAT
66659415 TTATTAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
29 1 0.03
30 1 0.03
31 12 0.35
32 6 0.18
33 1 0.03
34 13 0.38
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (29 bp):
TTTTTATAAAAATTTAAAATTTTAATATA
Found at i:66659423 original size:34 final size:34
Alignment explanation
Indices: 66659352--66659413 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
66659342 TCATTTTTTA
66659352 AAAAATTTAAAATATATTTATATTATTTTTAATT
1 AAAAATTTAAAATATATTTATATTATTTTTAATT
*
66659386 AAAAATTTAAAAT-T-TTAATA-TATTTTTA
1 AAAAATTTAAAATATATTTATATTATTTTTA
66659414 TTTATTAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 8 0.30
32 5 0.19
33 1 0.04
34 13 0.48
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (34 bp):
AAAAATTTAAAATATATTTATATTATTTTTAATT
Found at i:66660936 original size:58 final size:58
Alignment explanation
Indices: 66660797--66660940 Score: 148
Period size: 58 Copynumber: 2.5 Consensus size: 58
66660787 ATTCATTACA
** * * * *
66660797 TAAATTCGGGTCGAGTAATCTTGGCTGATAG-TAGTGATTTGACACAGTTTTCATCATG
1 TAAATTCAAGTCGAGTAAACTTGGTTGAAAGCTA-TGATTCGACACAGTTTTCATCATG
* ** *
66660855 TAAGTTCAAGTCGAGTAGGCTTGGTTGAAAGCTATGATTCGACAC-GATTTTCATTATG
1 TAAATTCAAGTCGAGTAAACTTGGTTGAAAGCTATGATTCGACACAG-TTTTCATCATG
* *
66660913 TAAATTCAAGTTGATTAAACTTGGTTGA
1 TAAATTCAAGTCGAGTAAACTTGGTTGA
66660941 CGTGATTTGA
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
57 1 0.01
58 67 0.96
59 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.36
Consensus pattern (58 bp):
TAAATTCAAGTCGAGTAAACTTGGTTGAAAGCTATGATTCGACACAGTTTTCATCATG
Found at i:66661262 original size:98 final size:95
Alignment explanation
Indices: 66661158--66661376 Score: 215
Period size: 98 Copynumber: 2.2 Consensus size: 95
66661148 TAGGGTTATC
* * *
66661158 TTATTACCTTCTGTAAGCCTCCCCTTATACATCTGGGAGTAACGTCATGTTATCACTTTTCGTAA
1 TTATTACCTT-TGTAAGCCTCCCC-T-TACATCTAGGAATAACGTCATATTATCACTTTTCGTAA
*
66661223 GCGTCCCCCTATACGTTTAGGAGCA-AGGTCACT
63 GCCTCCCCCTATACGTTTAGGAGCAGA-GTCACT
* * * * * * * *
66661256 TTATTACTTTTTTTAAGTCTTACCCCTTGCGTCTAGGAATAAGGTTATATTATTACTTTTCGTAA
1 TTATTAC-CTTTGTAAG-CCT-CCCCTTACATCTAGGAATAACGTCATATTATCACTTTTCGTAA
** * *
66661321 GCCTCCCCCTATGTGTTTGGGAGCAGAGTTACT
63 GCCTCCCCCTATACGTTTAGGAGCAGAGTCACT
66661354 TTATTACCTTTCGTAAGCCTCCC
1 TTATTACCTTT-GTAAGCCTCCC
66661377 TCTATGCTAT
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
96 3 0.03
97 5 0.05
98 79 0.81
99 6 0.06
100 4 0.04
ACGTcount: A:0.21, C:0.24, G:0.16, T:0.38
Consensus pattern (95 bp):
TTATTACCTTTGTAAGCCTCCCCTTACATCTAGGAATAACGTCATATTATCACTTTTCGTAAGCC
TCCCCCTATACGTTTAGGAGCAGAGTCACT
Found at i:66661265 original size:49 final size:49
Alignment explanation
Indices: 66661025--66661426 Score: 195
Period size: 49 Copynumber: 8.3 Consensus size: 49
66661015 GTGACTTTTA
* * *
66661025 TCGTAAGCCT-CCCCTATGTGTCTT-GAAGCAA-GAT-CTTT-TTACTTT
1 TCGTAAGCCTCCCCCTATGCGT-TTAGGAGCAAGGTTACTTTATTACTTT
* * * * * * *
66661070 CCGTAAGCTTCCATCC-ATGCGTTTGGGAGTAGGGTCACTTTATTACTTT
1 TCGTAAGCCTCC-CCCTATGCGTTTAGGAGCAAGGTTACTTTATTACTTT
* * ** ** * *
66661119 CCATAAGCCTCCCTCC-ATGTATTTAGGAATAGGGTTA-TCTTATTAC-CT
1 TCGTAAGCCTCCC-CCTATGCGTTTAGGAGCAAGGTTACT-TTATTACTTT
* * * * * * * * *
66661167 TCTGTAAGCCTCCCCTTATACATCTGGGAGTAACGTCA-TGTTATCACTTT
1 TC-GTAAGCCTCCCCCTATGCGTTTAGGAGCAAGGTTACT-TTATTACTTT
* * *
66661217 TCGTAAGCGTCCCCCTATACGTTTAGGAGCAAGGTCACTTTATTACTTT
1 TCGTAAGCCTCCCCCTATGCGTTTAGGAGCAAGGTTACTTTATTACTTT
** * * * **
66661266 TTTTAAGTCTTACCCCT-TGCGTCTAGGAATAAGGTTA-TATTATTACTTT
1 TCGTAAG-CCTCCCCCTATGCGTTTAGGAGCAAGGTTACT-TTATTACTTT
* * *
66661315 TCGTAAGCCTCCCCCTATGTGTTTGGGAGC-AGAGTTACTTTATTACCTT
1 TCGTAAGCCTCCCCCTATGCGTTTAGGAGCAAG-GTTACTTTATTACTTT
* * * *
66661364 TCGTAAGCCTCCCTCTATGC-TATTAGAAGCAGGGTTATTTTATTAC-TT
1 TCGTAAGCCTCCCCCTATGCGT-TTAGGAGCAAGGTTACTTTATTACTTT
*
66661412 ACTGTAAGCCTCCCC
1 TC-GTAAGCCTCCCC
66661427 TGTGCATTTG
Statistics
Matches: 270, Mismatches: 67, Indels: 36
0.72 0.18 0.10
Matches are distributed among these distances:
45 10 0.04
46 10 0.04
47 3 0.01
48 22 0.08
49 212 0.79
50 13 0.05
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (49 bp):
TCGTAAGCCTCCCCCTATGCGTTTAGGAGCAAGGTTACTTTATTACTTT
Found at i:66661513 original size:19 final size:18
Alignment explanation
Indices: 66661484--66661524 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 18
66661474 TTGCAATAGA
66661484 TACAGAATACAATAGACC
1 TACAGAATACAATAGACC
66661502 TACAGTAATACAATAGACC
1 TACAG-AATACAATAGACC
66661521 TACA
1 TACA
66661525 TTTGAGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 5 0.23
19 17 0.77
ACGTcount: A:0.49, C:0.22, G:0.10, T:0.20
Consensus pattern (18 bp):
TACAGAATACAATAGACC
Found at i:66667348 original size:17 final size:18
Alignment explanation
Indices: 66667295--66667420 Score: 175
Period size: 19 Copynumber: 6.9 Consensus size: 18
66667285 AATCATATCT
*
66667295 TCTAAGATTGTATATCATA
1 TCTAAGATTG-CTATCATA
*
66667314 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
66667332 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
66667349 TCTAAGATTGCAATCATA
1 TCTAAGATTGCTATCATA
66667367 TCTAAGATTG-TATCATA
1 TCTAAGATTGCTATCATA
*
66667384 TCTAAGATTGCATATCACA
1 TCTAAGATTGC-TATCATA
66667403 TCTAAGATTGCATATCAT
1 TCTAAGATTGC-TATCAT
66667421 TGAAGATTAT
Statistics
Matches: 97, Mismatches: 7, Indels: 6
0.88 0.06 0.05
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 33 0.34
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCTATCATA
Found at i:66667353 original size:35 final size:35
Alignment explanation
Indices: 66667295--66667412 Score: 200
Period size: 35 Copynumber: 3.3 Consensus size: 35
66667285 AATCATATCT
66667295 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG--TATCATATCTAAGATTGCAATCATA
66667332 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCAATCATA
*
66667367 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
66667403 TCTAAGATTG
1 TCTAAGATTG
66667413 CATATCATTG
Statistics
Matches: 79, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
35 54 0.68
36 15 0.19
37 10 0.13
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.37
Consensus pattern (35 bp):
TCTAAGATTGTATCATATCTAAGATTGCAATCATA
Found at i:66667428 original size:17 final size:18
Alignment explanation
Indices: 66667295--66667417 Score: 96
Period size: 17 Copynumber: 6.8 Consensus size: 18
66667285 AATCATATCT
* *
66667295 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATAT-ACA
*
66667314 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
66667332 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
*
66667349 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATAT-ACA
*
66667367 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATAT-ACA
66667384 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATAT-ACA
66667403 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
66667418 CATTGAAGAT
Statistics
Matches: 96, Mismatches: 2, Indels: 12
0.87 0.02 0.11
Matches are distributed among these distances:
17 32 0.33
18 32 0.33
19 32 0.33
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCATATACA
Found at i:66668473 original size:119 final size:118
Alignment explanation
Indices: 66668034--66668666 Score: 1023
Period size: 119 Copynumber: 5.3 Consensus size: 118
66668024 CTGGAGTTTG
* * * * * **
66668034 TTTGAGAACATCTGAGATTCAAATCTACTATGTCCTCGATTTGTTTCTTGTAAACATAAAAATGT
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
66668099 CAAATCATCTTGGATCTGGCTTCAGTACAAACATCTGAAGGTTAGATCTGCCATG
66 CAAATCATCTTGGATCT-GCTTCAGTATAAACATCTGAA-GTTAGATCTGCTATA
*
66668154 TGTCTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGGTCCTTGTAAACACAAGAAT
1 T-T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
66668219 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
64 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAG-TTAGATCTGCTATA
66668275 TGTCTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
1 T-T-TGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAAT
66668340 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTTAGATCTGCTATA
64 ACCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAG-TTAGATCTGCTATA
66668396 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* * *
66668461 CAAATCATCTTGGATCTGTTTCAGTATAAACATCTAAAAGCTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCT-GAAGTTAGATCTGCTATA
*
66668515 TTTGAGAACATCTAAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
* *
66668580 CAAATCATCTTGGATCTGTTTCAGTATAAACATCTGAAAGCTAGATCTGCTATA
66 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTG-AAGTTAGATCTGCTATA
66668634 TTTGAGAACATCTGAGAGTCAAATCTGCTATGT
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGT
66668667 TCAACTTGTT
Statistics
Matches: 490, Mismatches: 18, Indels: 11
0.94 0.03 0.02
Matches are distributed among these distances:
119 258 0.53
120 6 0.01
121 154 0.31
122 72 0.15
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.33
Consensus pattern (118 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAGAATAC
CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTTAGATCTGCTATA
Found at i:66668778 original size:44 final size:44
Alignment explanation
Indices: 66668675--66668786 Score: 111
Period size: 44 Copynumber: 2.5 Consensus size: 44
66668665 GTTCAACTTG
* *
66668675 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGC
1 TTCCCTATAAACACAGGAATGCCATGCTGAAATCTTCGATCTGA
* * * * **
66668719 TTCGCTGTAAGCACAGGAATGTCA-GATCTGCTATCTTCGATCT-A
1 TTCCCTATAAACACAGGAATGCCATG--CTGAAATCTTCGATCTGA
*
66668763 TTCCCTATAAACACAGGGATGCCA
1 TTCCCTATAAACACAGGAATGCCA
66668787 AATCTTGTTT
Statistics
Matches: 53, Mismatches: 13, Indels: 4
0.76 0.19 0.06
Matches are distributed among these distances:
43 1 0.02
44 38 0.72
45 14 0.26
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (44 bp):
TTCCCTATAAACACAGGAATGCCATGCTGAAATCTTCGATCTGA
Found at i:66669696 original size:8 final size:8
Alignment explanation
Indices: 66669683--66669740 Score: 59
Period size: 8 Copynumber: 7.6 Consensus size: 8
66669673 GGCCTCTCCA
66669683 TTTTTCTT
1 TTTTTCTT
*
66669691 TTTTTCTC
1 TTTTTCTT
*
66669699 TTTTT-TA
1 TTTTTCTT
66669706 TTTTTC--
1 TTTTTCTT
66669712 TTTTTCTT
1 TTTTTCTT
*
66669720 TTTTTATT
1 TTTTTCTT
*
66669728 TTTTTATT
1 TTTTTCTT
66669736 TTTTT
1 TTTTT
66669741 TTAAATAGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
6 6 0.14
7 6 0.14
8 32 0.73
ACGTcount: A:0.05, C:0.09, G:0.00, T:0.86
Consensus pattern (8 bp):
TTTTTCTT
Found at i:66669709 original size:15 final size:14
Alignment explanation
Indices: 66669691--66669742 Score: 63
Period size: 14 Copynumber: 3.7 Consensus size: 14
66669681 CATTTTTCTT
66669691 TTTTTCTCTTTTTTA
1 TTTTTCT-TTTTTTA
66669706 TTTTTCTTTTTCTT-
1 TTTTTCTTTTT-TTA
*
66669720 TTTTTATTTTTTTA
1 TTTTTCTTTTTTTA
66669734 TTTTT-TTTT
1 TTTTTCTTTT
66669743 AAATAGAAGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
13 6 0.18
14 19 0.56
15 9 0.26
ACGTcount: A:0.06, C:0.08, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTCTTTTTTTA
Found at i:66669715 original size:20 final size:20
Alignment explanation
Indices: 66669691--66669743 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
66669681 CATTTTTCTT
66669691 TTTTTCTCTTTTTTATTTTTC
1 TTTTTCT-TTTTTTATTTTTC
66669712 TTTTTCTTTTTTTATTTTT-
1 TTTTTCTTTTTTTATTTTTC
*
66669731 TTATT-TTTTTTTA
1 TTTTTCTTTTTTTA
66669744 AATAGAAGTC
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
18 8 0.26
19 4 0.13
20 12 0.39
21 7 0.23
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (20 bp):
TTTTTCTTTTTTTATTTTTC
Found at i:66669715 original size:29 final size:27
Alignment explanation
Indices: 66669683--66669742 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 27
66669673 GGCCTCTCCA
*
66669683 TTTTTCTTTTTTTCTCTTTTTTATTTTT
1 TTTTTCTTTTTTTAT-TTTTTTATTTTT
66669711 CTTTTTCTTTTTTTATTTTTTTATTTTT
1 -TTTTTCTTTTTTTATTTTTTTATTTTT
66669739 TTTT
1 TTTT
66669743 AAATAGAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 4 0.13
28 12 0.40
29 14 0.47
ACGTcount: A:0.05, C:0.08, G:0.00, T:0.87
Consensus pattern (27 bp):
TTTTTCTTTTTTTATTTTTTTATTTTT
Found at i:66673582 original size:18 final size:18
Alignment explanation
Indices: 66673559--66673689 Score: 185
Period size: 18 Copynumber: 7.3 Consensus size: 18
66673549 AAAATTGTAT
*
66673559 ATCATATCTGAGATTGCA
1 ATCATATCTAAGATTGCA
66673577 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGCA
*
66673595 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCA
66673612 ATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGCA
*
66673630 ATCATATCTAAGATTG-T
1 ATCATATCTAAGATTGCA
*
66673647 ATCATACCTAAGATTGCA
1 ATCATATCTAAGATTGCA
*
66673665 TATCACATCTAAGATTGCA
1 -ATCATATCTAAGATTGCA
66673684 TATCAT
1 -ATCAT
66673690 TGAAGATTAT
Statistics
Matches: 101, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
17 31 0.31
18 49 0.49
19 21 0.21
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (18 bp):
ATCATATCTAAGATTGCA
Found at i:66673623 original size:35 final size:35
Alignment explanation
Indices: 66673559--66673681 Score: 192
Period size: 35 Copynumber: 3.5 Consensus size: 35
66673549 AAAATTGTAT
* *
66673559 ATCATATCTGAGATTGCAATCATATCTAAGATTGCA
1 ATCATATCTAAGATTG-TATCATATCTAAGATTGCA
66673595 ATCATATCTAAGATTGTATCATATCTAAGATTGCA
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCA
*
66673630 ATCATATCTAAGATTGTATCATACCTAAGATTGCA
1 ATCATATCTAAGATTGTATCATATCTAAGATTGCA
*
66673665 TATCACATCTAAGATTG
1 -ATCATATCTAAGATTG
66673682 CATATCATTG
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
35 52 0.63
36 30 0.37
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (35 bp):
ATCATATCTAAGATTGTATCATATCTAAGATTGCA
Found at i:66673697 original size:53 final size:54
Alignment explanation
Indices: 66673552--66673689 Score: 199
Period size: 53 Copynumber: 2.5 Consensus size: 54
66673542 ATCTTTTAAA
* *
66673552 ATTGTATATCATATCTGAGATTGCAATCATATCTAAGATTGCAATCATATCTAAG
1 ATTG-ATATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATACCTAAG
*
66673607 ATTG-TATCATATCTAAGATTGCAATCATATCTAAGATTG-TATCATACCTAAG
1 ATTGATATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATACCTAAG
*
66673659 ATTGCATATCACATCTAAGATTGCATATCAT
1 ATTG-ATATCATATCTAAGATTGCA-ATCAT
66673690 TGAAGATTAT
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
52 15 0.20
53 34 0.45
54 18 0.24
55 9 0.12
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (54 bp):
ATTGATATCATATCTAAGATTGCAATCATATCTAAGATTGCAATCATACCTAAG
Found at i:66678296 original size:21 final size:21
Alignment explanation
Indices: 66678271--66678335 Score: 75
Period size: 21 Copynumber: 3.2 Consensus size: 21
66678261 TAGCCTTCGG
66678271 GCTTCCGTTTAGCACTTGTGT
1 GCTTCCGTTTAGCACTTGTGT
*
66678292 GCTTCAG-TTAGC-CTTCG-G-
1 GCTTCCGTTTAGCACTT-GTGT
*
66678310 GCTTCCGTTTAGCACTTATGT
1 GCTTCCGTTTAGCACTTGTGT
66678331 GCTTC
1 GCTTC
66678336 AGCTAGACTT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
18 6 0.17
19 9 0.25
20 10 0.28
21 11 0.31
ACGTcount: A:0.11, C:0.26, G:0.23, T:0.40
Consensus pattern (21 bp):
GCTTCCGTTTAGCACTTGTGT
Found at i:66678296 original size:39 final size:39
Alignment explanation
Indices: 66678238--66678353 Score: 178
Period size: 39 Copynumber: 3.0 Consensus size: 39
66678228 TGGGGTTTCA
* * *
66678238 GTTTAGCTCTAATGAGCTTCAGTTAGCCTTCGGGCTTCC
1 GTTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCC
*
66678277 GTTTAGCACTTGTGTGCTTCAGTTAGCCTTCGGGCTTCC
1 GTTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCC
* *
66678316 GTTTAGCACTTATGTGCTTCAGCTAGACTTCGGGCTTC
1 GTTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTC
66678354 AAATCACGAT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.14, C:0.25, G:0.24, T:0.37
Consensus pattern (39 bp):
GTTTAGCACTTATGTGCTTCAGTTAGCCTTCGGGCTTCC
Found at i:66683939 original size:45 final size:42
Alignment explanation
Indices: 66683865--66683985 Score: 109
Period size: 41 Copynumber: 2.8 Consensus size: 42
66683855 ATGTGTTCTT
* * *
66683865 GTGTAAAACCACATCTGGGACGCTAGCATCGATATATGTGATTAC
1 GTGTAAAACCACATCTGAGACACTGGCATCGATAT-T-TGATT-C
* * *
66683910 GTGTAACACCACATCTGAGACATTGGCATCG-TATTTGATTT
1 GTGTAAAACCACATCTGAGACACTGGCATCGATATTTGATTC
* *** *
66683951 GTGTAAGACCTTGTCTGAGACAGTGGCATCGATAT
1 GTGTAAAACCACATCTGAGACACTGGCATCGATAT
66683986 GAGATAGCAT
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 26 0.41
42 8 0.12
43 1 0.02
44 3 0.05
45 26 0.41
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
GTGTAAAACCACATCTGAGACACTGGCATCGATATTTGATTC
Found at i:66686961 original size:56 final size:56
Alignment explanation
Indices: 66686894--66687005 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
66686884 AAACTTTTGG
*
66686894 TTTGTAGTAACATGTGACTCAATTGCACTAATATGCGTATAATATAAACCTGATGA
1 TTTGTAGTAACATGTGACTCAATTGCACTAATATGCGTAAAATATAAACCTGATGA
66686950 TTTGTAGTAACATGTGACTCAATTGCACTAATATGCGTAAAATATAAACCTGATGA
1 TTTGTAGTAACATGTGACTCAATTGCACTAATATGCGTAAAATATAAACCTGATGA
66687006 AAAAGTAGGT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (56 bp):
TTTGTAGTAACATGTGACTCAATTGCACTAATATGCGTAAAATATAAACCTGATGA
Found at i:66689384 original size:19 final size:20
Alignment explanation
Indices: 66689350--66689388 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
66689340 GATATGATAC
*
66689350 TAAAACTATTTAAAAAAAAT
1 TAAAACTATATAAAAAAAAT
66689370 TAAAA-TATATAAAAAAAAT
1 TAAAACTATATAAAAAAAAT
66689389 CAGGGAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
TAAAACTATATAAAAAAAAT
Found at i:66689675 original size:22 final size:21
Alignment explanation
Indices: 66689640--66689715 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
66689630 AAAAGGTATC
* *
66689640 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
66689661 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
66689684 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
66689703 TGC-AATCATATCT
1 TACAAATCATATCT
66689716 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:66689700 original size:19 final size:19
Alignment explanation
Indices: 66689676--66689747 Score: 114
Period size: 19 Copynumber: 3.9 Consensus size: 19
66689666 AATCATATCT
66689676 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
66689695 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
66689713 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
66689730 TCTAAGATTGCAAATCAT
1 TCTAAGATTGCATATCAT
66689748 TGAAGATTAT
Statistics
Matches: 49, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
17 16 0.33
18 16 0.33
19 17 0.35
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:66689732 original size:35 final size:37
Alignment explanation
Indices: 66689653--66689747 Score: 122
Period size: 35 Copynumber: 2.5 Consensus size: 37
66689643 AAATTAAATC
*
66689653 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTGC-AAATCATA---TCTAAGATTG-ATATCATA
66689695 TCTAAGATTGC-AATCATATCTAAGATTG-TATCATA
1 TCTAAGATTGCAAATCATATCTAAGATTGATATCATA
66689730 TCTAAGATTGCAAATCAT
1 TCTAAGATTGCAAATCAT
66689748 TGAAGATTAT
Statistics
Matches: 51, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
35 18 0.35
36 6 0.12
37 10 0.20
40 7 0.14
42 10 0.20
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (37 bp):
TCTAAGATTGCAAATCATATCTAAGATTGATATCATA
Found at i:66689904 original size:21 final size:20
Alignment explanation
Indices: 66689866--66689905 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
66689856 TTGGACTTCG
**
66689866 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
66689886 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
66689906 TCTGTGCTCG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:66690160 original size:45 final size:45
Alignment explanation
Indices: 66690104--66690371 Score: 247
Period size: 45 Copynumber: 5.9 Consensus size: 45
66690094 CGAAACCTGC
* * *
66690104 TATCTTTGATCTGCTCCCCGTCTAATACAGAGACACTAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
*
66690149 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGC
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * *
66690194 T-TCTTCAATCTGCTCCTCGTCTAATATAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * *
66690238 TATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGT
1 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
* * * * * * * * *
66690283 CATCTTGGATTTGCT--TCGATGTAA-ACACATGAAGCTCAGATCTGC
1 TATCTTCGATCTGCTCCCCG-TCTAATACAGA-GACGC-CAAATCTGT
* * *
66690328 TATGCCTTCGATCTGCTCCCCGTCTACTACAAAGATGCCAAATC
1 TAT--CTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATC
66690372 ATCTTAGATC
Statistics
Matches: 182, Mismatches: 32, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
43 6 0.03
44 47 0.26
45 101 0.55
47 15 0.08
48 7 0.04
49 6 0.03
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (45 bp):
TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGT
Found at i:66690215 original size:44 final size:45
Alignment explanation
Indices: 66690112--66690288 Score: 248
Period size: 45 Copynumber: 4.0 Consensus size: 45
66690102 GCTATCTTTG
* * *
66690112 ATCTGCTCCCCGTCTAATACAGAGACACTAAATCTGTTATCTTCG
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
*
66690157 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCT-TCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* * * *
66690201 ATCTGCTCCTCGTCTAATATAGAGATGCCAAATCTGTTATCTCCA
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
* * *
66690246 ATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTT
1 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTT
66690289 GGATTTGCTT
Statistics
Matches: 117, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
44 39 0.33
45 78 0.67
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGTTATCTTCA
Found at i:66690219 original size:89 final size:89
Alignment explanation
Indices: 66690112--66690281 Score: 259
Period size: 89 Copynumber: 1.9 Consensus size: 89
66690102 GCTATCTTTG
* * *
66690112 ATCTGCTCCCCGTCTAATACAGAGACACTAAATCTGTTATCTTCGATCTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTCCAATCTGCTCCCCGTCTAATAC
66690177 AGAGACGCCAAATCTGCTTCTTCA
66 AGAGACGCCAAATCTGCTTCTTCA
* * ** *
66690201 ATCTGCTCCTCGTCTAATATAGAGATGCCAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATAC
1 ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTCCAATCTGCTCCCCGTCTAATAC
*
66690266 AGAGATGCCAAATCTG
66 AGAGACGCCAAATCTG
66690282 TCATCTTGGA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 72 1.00
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.30
Consensus pattern (89 bp):
ATCTGCTCCCCGTCTAATACAGAGACACCAAATCTGTTATCTCCAATCTGCTCCCCGTCTAATAC
AGAGACGCCAAATCTGCTTCTTCA
Found at i:66690442 original size:78 final size:78
Alignment explanation
Indices: 66690322--66690605 Score: 408
Period size: 78 Copynumber: 3.6 Consensus size: 78
66690312 TGAAGCTCAG
* * *
66690322 ATCTGCTATGCCTTCGATCTGCTCCCCGTCTACTACAAAGATGCCAAATCATCTTAGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTT
66690387 CAATGAAGGTCCA
66 CAATGAAGGTCCA
* ** * *
66690400 ATCTGTTATGTCTTCGATCTGCTCCTTGTCTAATACAGAGATGCCAAATCATCTTGGATCTACTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTT
* *
66690465 TAATGAAGGTCAA
66 CAATGAAGGTCCA
*
66690478 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTT
1 ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTT
66690543 CAATGAAGGT-CA
66 CAATGAAGGTCCA
* * * **
66690555 GATCTGCTACGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 -ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
66690606 TGTTTCTTCG
Statistics
Matches: 181, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
77 1 0.01
78 180 0.99
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.32
Consensus pattern (78 bp):
ATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTAGATCTGCTT
CAATGAAGGTCCA
Found at i:66690597 original size:156 final size:156
Alignment explanation
Indices: 66690311--66690605 Score: 450
Period size: 156 Copynumber: 1.9 Consensus size: 156
66690301 ATGTAAACAC
* *
66690311 ATGAAGCTCAGATCTGCTATGCCTTCGATCTGCTCCCCGTCTACTACAAAGATGCCAAATCATCT
1 ATGAAGCTCAAATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
* * * *
66690376 TAGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCTTGTCTAATACAGAGA
66 TAGATCTGCTTCAATGAAGGTCCAATCTGCTACGTCTTCGATCTGCTCCTCGTCGAATACAGAGA
66690441 TGCCAAATCATCTTGGATCTACTTTA
131 TGCCAAATCATCTTGGATCTACTTTA
* * * *
66690467 ATGAAGGTCAAATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
1 ATGAAGCTCAAATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
**
66690532 TAGATCTGCTTCAATGAAGGT-CAGATCTGCTACGTCTTCGATCTGCT-CTCCGTCGAATATGGA
66 TAGATCTGCTTCAATGAAGGTCCA-ATCTGCTACGTCTTCGATCTGCTCCT-CGTCGAATACAGA
66690595 GATGCCAAATC
129 GATGCCAAATC
66690606 TGTTTCTTCG
Statistics
Matches: 125, Mismatches: 12, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
155 4 0.03
156 121 0.97
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (156 bp):
ATGAAGCTCAAATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
TAGATCTGCTTCAATGAAGGTCCAATCTGCTACGTCTTCGATCTGCTCCTCGTCGAATACAGAGA
TGCCAAATCATCTTGGATCTACTTTA
Found at i:66690936 original size:220 final size:219
Alignment explanation
Indices: 66690548--66691044 Score: 834
Period size: 220 Copynumber: 2.3 Consensus size: 219
66690538 TGCTTCAATG
* * *
66690548 AAGGTCAGATCTGCTACGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
* *
66690613 TCGATTTGTTCTCTAACAGTACAGAGATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
66 TCGATTTGTTCTCTAACAATACAGAAATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
*
66690678 GAAAGCTAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTGG
131 GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTGG
*
66690743 ATCTACTTCGATGTAAAGACATCCG
196 ATCTACTTCGATGTAAA-ACATCCA
* * *
66690768 AATGTTAGATCTGATATGTCTTTGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
* * *
66690833 TCGATTTGTTCTCTGACAATTCAGAAATGT-TAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TCGATTTGTTCTCTAACAATACAGAAAT-TCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
66690897 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
130 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTG
*
66690962 GATCTACTTCGATGTGAAACATCCA
195 GATCTACTTCGATGTAAAACATCCA
66690987 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATC
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATC
66691045 ATCTTAGATC
Statistics
Matches: 258, Mismatches: 18, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
219 61 0.24
220 196 0.76
221 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (219 bp):
AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
TCGATTTGTTCTCTAACAATACAGAAATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
GAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTGG
ATCTACTTCGATGTAAAACATCCA
Found at i:66691191 original size:89 final size:91
Alignment explanation
Indices: 66690907--66691596 Score: 436
Period size: 78 Copynumber: 8.3 Consensus size: 91
66690897 TGAAAGCCAA
* *
66690907 ATCTGCTATGTCTTCGATCTGCTCCTTGTC-AACGCAAG-GATGCCAAATCATCTTGGATCTACT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAAACACAAGAGATGCCAAATCATCTTGGATCTACT
*
66690970 TCGATGTG-AAACATCCAAAGGTTAG
66 TCGATGTGAAAACATCCGAAGGTTAG
* * * * *
66690995 ATCTGCTATGTCTTCGATCTGCT-CTCCGTCGAATA-TAGAGATGCCAAATCATCTTAGATCTGC
1 ATCTGCTATGTCTTCGATCTGCTCCT-CGTCAAACACAAGAGATGCCAAATCATCTTGGATCTAC
* * ** *
66691058 TTC-A-GCGTAAACACAT--GAAAGCCAA
65 TTCGATGTG-AAA-ACATCCGAAGGTTAG
* *
66691083 ATCTGCTATGTCTTCGATCTGCTCCTTGT-AAACACAAG-GATGCTAAATCATCTTGGATCTACT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAAACACAAGAGATGCCAAATCATCTTGGATCTACT
66691146 TCGATGTGAAAACATCCGAAGGTTAG
66 TCGATGTGAAAACATCCGAAGGTTAG
* * * *
66691172 ATCTGATATGTCTTCGATCTGCTCC-CGTCTAATAC-AGAGATGCCAAATCATCTTGGATCTGCT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAAACACAAGAGATGCCAAATCATCTTGGATCTACT
*
66691235 TC---------A-AT--GAAGGTCCA-
66 TCGATGTGAAAACATCCGAAGGT-TAG
* * * * * * *
66691249 ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATA-AAGAGATGCCAAATCATCCTGGATCTGCT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAAACACAAGAGATGCCAAATCATCTTGGATCTACT
*
66691313 TC---------A-AT--GAAGGTCAG
66 TCGATGTGAAAACATCCGAAGGTTAG
* * * * *
66691327 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATAC-AGAGATGCCAAATCATCTTGGATCTGCT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAAACACAAGAGATGCCAAATCATCTTGGATCTACT
*
66691391 TC---------A-AT--GAAGGTCAG
66 TCGATGTGAAAACATCCGAAGGTTAG
* * * *
66691405 ATCTGCTATGTCTTCGATCTGCT-CTCCGTCGAATA-TAGAGATGCCAAATCATCTTGGATCTGC
1 ATCTGCTATGTCTTCGATCTGCTCCT-CGTCAAACACAAGAGATGCCAAATCATCTTGGATCTAC
66691468 TTC---------A-AT--GAAGGTCTA-
65 TTCGATGTGAAAACATCCGAAGGT-TAG
* * * * *
66691483 ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATAC-AGAGATGCCAAATCATCTTGGATCTACT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAAACACAAGAGATGCCAAATCATCTTGGATCTACT
66691547 TCGATGTGAAAACATCCGAAGGTTAG
66 TCGATGTGAAAACATCCGAAGGTTAG
* * *
66691573 ATTTACTATGTCTTAGATCTGCTC
1 ATCTGCTATGTCTTCGATCTGCTC
66691597 TCCGTCGAAT
Statistics
Matches: 514, Mismatches: 51, Indels: 72
0.81 0.08 0.11
Matches are distributed among these distances:
77 32 0.06
78 248 0.48
79 4 0.01
80 1 0.00
87 36 0.07
88 70 0.14
89 93 0.18
90 30 0.06
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (91 bp):
ATCTGCTATGTCTTCGATCTGCTCCTCGTCAAACACAAGAGATGCCAAATCATCTTGGATCTACT
TCGATGTGAAAACATCCGAAGGTTAG
Found at i:66691213 original size:176 final size:176
Alignment explanation
Indices: 66690864--66691237 Score: 651
Period size: 176 Copynumber: 2.1 Consensus size: 176
66690854 CAGAAATGTT
*
66690864 AAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGC
1 AAATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
* *
66690929 TCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAACATCCAAAGGTTA
66 TCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAACATCCAAAGGTTA
* *
66690994 GATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCC
131 GATCTGATATGTCTTCGATCTGCTCTCCGTCGAATACAGAGATGCC
66691040 AAATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
1 AAATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
* *
66691105 TCCTTGTAAACACAAGGATGCTAAATCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTT
66 TCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTG-AAACATCCAAAGGTT
*
66691170 AGATCTGATATGTCTTCGATCTGCTC-CCGTCTAATACAGAGATGCC
130 AGATCTGATATGTCTTCGATCTGCTCTCCGTCGAATACAGAGATGCC
*
66691216 AAATCATCTTGGATCTGCTTCA
1 AAATCATCTTAGATCTGCTTCA
66691238 ATGAAGGTCC
Statistics
Matches: 188, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
176 149 0.79
177 39 0.21
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (176 bp):
AAATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
TCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAACATCCAAAGGTTA
GATCTGATATGTCTTCGATCTGCTCTCCGTCGAATACAGAGATGCC
Found at i:66691307 original size:78 final size:78
Alignment explanation
Indices: 66691163--66691548 Score: 616
Period size: 78 Copynumber: 5.0 Consensus size: 78
66691153 GAAAACATCC
* *
66691163 GAAGGTTAGATCTGATATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
66691227 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * * *
66691240 GAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCATCCT
1 GAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
66691304 GGATCTGCTTCAAT
65 GGATCTGCTTCAAT
*
66691318 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
66691383 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * *
66691396 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
66691461 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* *
66691474 GAAGGTCTA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
1 GAAGGTC-AGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
66691538 GGATCTACTTC
65 GGATCTGCTTC
66691549 GATGTGAAAA
Statistics
Matches: 285, Mismatches: 20, Indels: 7
0.91 0.06 0.02
Matches are distributed among these distances:
77 29 0.10
78 255 0.89
79 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:66703875 original size:21 final size:22
Alignment explanation
Indices: 66703849--66703892 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
66703839 AAAAGGTATC
*
66703849 TACAAATTAAATC-TCTAAGAT
1 TACAAATCAAATCTTCTAAGAT
*
66703870 TACAAATCATATCTTCTAAGAT
1 TACAAATCAAATCTTCTAAGAT
66703892 T
1 T
66703893 GCATATCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCAAATCTTCTAAGAT
Found at i:66703890 original size:22 final size:22
Alignment explanation
Indices: 66703849--66703905 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
66703839 AAAAGGTATC
* *
66703849 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
66703870 TACAAATCATATCTTCTAAGAT
1 TACAAATCATATCTTCTAAGAT
* *
66703892 TGCATATCATATCT
1 TACAAATCATATCT
66703906 AAGATTGCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 11 0.35
22 20 0.65
ACGTcount: A:0.40, C:0.18, G:0.05, T:0.37
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:66703908 original size:19 final size:19
Alignment explanation
Indices: 66703884--66703954 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
66703874 AATCATATCT
66703884 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
66703903 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
66703921 TCT-AGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
66703937 TCTAAGATTGCAAATCAT
1 TCTAAGATTGCATATCAT
66703955 TGAAGATTAT
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
16 9 0.19
17 12 0.26
18 9 0.19
19 17 0.36
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:66703962 original size:34 final size:35
Alignment explanation
Indices: 66703887--66703966 Score: 103
Period size: 34 Copynumber: 2.3 Consensus size: 35
66703877 CATATCTTCT
66703887 AAGATTGCATATCATATCTAAGATTGCAATCATATC
1 AAGATTG-ATATCATATCTAAGATTGCAATCATATC
* *
66703923 TAGATTG-TATCATATCTAAGATTGCAAATCAT-TG
1 AAGATTGATATCATATCTAAGATTGC-AATCATATC
66703957 AAGATT-ATAT
1 AAGATTGATAT
66703967 TTCCATATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
34 27 0.69
35 6 0.15
36 6 0.15
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (35 bp):
AAGATTGATATCATATCTAAGATTGCAATCATATC
Found at i:66704109 original size:20 final size:20
Alignment explanation
Indices: 66704072--66704110 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
66704062 TTGGACTTCG
* **
66704072 TTTTTTTTTTGGGTTTATTA
1 TTTTGTTTTTGGACTTATTA
66704092 TTTTGTTTTTGGACTTATT
1 TTTTGTTTTTGGACTTATT
66704111 TCTGTGCTCG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTGTTTTTGGACTTATTA
Found at i:66704457 original size:89 final size:88
Alignment explanation
Indices: 66704316--66704484 Score: 250
Period size: 89 Copynumber: 1.9 Consensus size: 88
66704306 GCTATCTTTG
* * *
66704316 ATCTGCTCCCCGTCTAATACAGAGACACTAATCTGTTATCTTCGATCTGCTCCCCGTCTAATACA
1 ATCTGCTCCCCGTCTAATACAGAGACACAAATCTGTTATCTCCAATCTGCTCCCCGTCTAATACA
66704381 GAGACGCCAAATCTGCTTCTTCA
66 GAGACGCCAAATCTGCTTCTTCA
* * *
66704404 ATCTGCTCCTCGTCTAATATAGAGATGC-CAAATCTGTTATCTCCAATTTGCTCCCCGTCTAATA
1 ATCTGCTCCCCGTCTAATACAGAGA--CACAAATCTGTTATCTCCAATCTGCTCCCCGTCTAATA
*
66704468 CAGAGATGCCAAATCTG
64 CAGAGACGCCAAATCTG
66704485 TCATCTTGGA
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
88 23 0.32
89 48 0.67
90 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.30
Consensus pattern (88 bp):
ATCTGCTCCCCGTCTAATACAGAGACACAAATCTGTTATCTCCAATCTGCTCCCCGTCTAATACA
GAGACGCCAAATCTGCTTCTTCA
Found at i:66704467 original size:45 final size:45
Alignment explanation
Indices: 66704316--66704491 Score: 241
Period size: 44 Copynumber: 4.0 Consensus size: 45
66704306 GCTATCTTTG
* *
66704316 ATCTGCTCCCCGTCTAATACAGAGA--CACTAATCTGTTATCTTCG
1 ATCTGCTCCCCGTCTAATACAGAGATGC-CAAATCTGTTATCTTCA
* *
66704360 ATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTGCT-TCTTCA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCA
* * *
66704404 ATCTGCTCCTCGTCTAATATAGAGATGCCAAATCTGTTATCTCCA
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCA
* *
66704449 ATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTCATCTT
1 ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTT
66704492 GGATTTGCTT
Statistics
Matches: 116, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
44 64 0.55
45 51 0.44
46 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.14, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTTATCTTCA
Found at i:66704498 original size:45 final size:45
Alignment explanation
Indices: 66704309--66704574 Score: 231
Period size: 44 Copynumber: 5.9 Consensus size: 45
66704299 GAAACCTGCT
* * *
66704309 ATCTTTGATCTGCTCCCCGTCTAATACAGAGA--CACTAATCTGTT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGC-CAAATCTGTC
*
66704353 ATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAATCTG-C
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTC
* * * * *
66704397 TTCTTCAATCTGCTCCTCGTCTAATATAGAGATGCCAAATCTGTT
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTC
* * *
66704442 ATCTCCAATTTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTC
1 ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTC
* * * * * * *
66704487 ATCTTGGATTTGCT--TCGATGTAA-ACACATGAAGCTCAGATCTG-C
1 ATCTTCGATCTGCTCCCCG-TCTAATACAGA-GATGC-CAAATCTGTC
* *
66704531 TATGCCTTCGATCTGCTCCCCGTCTACTACAAAGATGCCAAATC
1 -AT--CTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
66704575 ATCTTAGATC
Statistics
Matches: 179, Mismatches: 31, Indels: 21
0.77 0.13 0.09
Matches are distributed among these distances:
43 6 0.03
44 78 0.44
45 66 0.37
46 1 0.01
47 15 0.08
48 7 0.04
49 6 0.03
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31
Consensus pattern (45 bp):
ATCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCTGTC
Found at i:66704771 original size:77 final size:78
Alignment explanation
Indices: 66704514--66704807 Score: 412
Period size: 78 Copynumber: 3.8 Consensus size: 78
66704504 ATGTAAACAC
* * * *
66704514 ATGAAGCTCAGATCTGCTATGCCTTCGATCTGCTCCCCGTCTACTACAAAGATGCCAAATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
66704579 TAGATCTGCTTCA
66 TAGATCTGCTTCA
* **
66704592 ATGAAGGTCCA-ATCTGTTATGTCTTCGATCTGCTCCTTGTCTAATACAGAGATGCCAAATCATC
1 ATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATC
* * *
66704656 TTGGATCTACTTTA
65 TTAGATCTGCTTCA
* *
66704670 ATGAAGGTCAAATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCC-AATCATCT
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
66704734 TAGATCTGCTTCA
66 TAGATCTGCTTCA
* * * **
66704747 ATGAAGGTCAGATCTGCTACGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATC
1 ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATC
66704808 TGTTTCTTCG
Statistics
Matches: 189, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
77 69 0.37
78 118 0.62
79 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (78 bp):
ATGAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCT
TAGATCTGCTTCA
Found at i:66704799 original size:155 final size:156
Alignment explanation
Indices: 66704514--66704807 Score: 441
Period size: 155 Copynumber: 1.9 Consensus size: 156
66704504 ATGTAAACAC
* *
66704514 ATGAAGCTCAGATCTGCTATGCCTTCGATCTGCTCCCCGTCTACTACAAAGATGCCAAATCATCT
1 ATGAAGCTCAAATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
* * * *
66704579 TAGATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTCGATCTGCTCCTTGTCTAATACAGAGA
66 TAGATCTGCTTCAATGAAGGTCCAATCTGCTACGTCTTCGATCTGCTCCTCGTCGAATACAGAGA
66704644 TGCCAAATCATCTTGGATCTACTTTA
131 TGCCAAATCATCTTGGATCTACTTTA
* * * *
66704670 ATGAAGGTCAAATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCC-AATCATCT
1 ATGAAGCTCAAATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
**
66704734 TAGATCTGCTTCAATGAAGGT-CAGATCTGCTACGTCTTCGATCTGCT-CTCCGTCGAATATGGA
66 TAGATCTGCTTCAATGAAGGTCCA-ATCTGCTACGTCTTCGATCTGCTCCT-CGTCGAATACAGA
66704797 GATGCCAAATC
129 GATGCCAAATC
66704808 TGTTTCTTCG
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
154 4 0.03
155 70 0.56
156 50 0.40
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (156 bp):
ATGAAGCTCAAATCTGCTATGCCTTCGATCTGCTCCCCGTCTAATACAAAGATGCCAAATCATCT
TAGATCTGCTTCAATGAAGGTCCAATCTGCTACGTCTTCGATCTGCTCCTCGTCGAATACAGAGA
TGCCAAATCATCTTGGATCTACTTTA
Found at i:66705204 original size:88 final size:89
Alignment explanation
Indices: 66705107--66705792 Score: 398
Period size: 78 Copynumber: 8.3 Consensus size: 89
66705097 TGAAAGCCAA
* *
66705107 ATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAG-GATGCCAAATCATCTTGGATCTACTT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAACACAAGAGATGCCAAATCATCTTGGATCTACTT
66705171 CGATGTGAAACATCCAAAGGTTAG
66 CGATGTGAAACATCCAAAGGTTAG
* * * * *
66705195 ATCTGCTATGTCTTCGATCTGCT-CTCCGTCGATA-TAGAGATGCC-AATCATCTTAGATCTGCT
1 ATCTGCTATGTCTTCGATCTGCTCCT-CGTCAACACAAGAGATGCCAAATCATCTTGGATCTACT
* * * ** *
66705257 TC-AGCGTAAACACAT-GAAA-GCCAA
65 TCGA-TGTGAA-ACATCCAAAGGTTAG
* *
66705281 ATCTGCTATGTCTTCGATCTGCTCCTTGT-AACACAAG-GATGCTAAATCATCTTGGATCTACTT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTCAACACAAGAGATGCCAAATCATCTTGGATCTACTT
*
66705344 CGATGTGAAAACATCCGAAGGTTAG
66 CGATGTG-AAACATCCAAAGGTTAG
* * *
66705369 ATCTGATATGTCTTCGATCTGCTCC-CGTCTAATAC-AGAGATGCCAAATCATCTTGGATCTGCT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTC-AACACAAGAGATGCCAAATCATCTTGGATCTACT
* **
66705432 TC-A-ATG-AAGGTCC-------A-
65 TCGATGTGAAACATCCAAAGGTTAG
* * * * * *
66705446 ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATA-AAGAGATGCCAAATCATCCTGGATCTGCT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTC-AACACAAGAGATGCCAAATCATCTTGGATCTACT
* *
66705510 TC--------A-AT--GAAGGTCAG
65 TCGATGTGAAACATCCAAAGGTTAG
* * * *
66705524 ATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATAC-AGAGATGCC-AATCATCTTGGATCTGCT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTC-AACACAAGAGATGCCAAATCATCTTGGATCTACT
* *
66705587 TC--------A-AT--GAAGGTCAG
65 TCGATGTGAAACATCCAAAGGTTAG
* * *
66705601 ATCTGCTATGTCTTCGATCTGCT-CTCCGTCGAATA-TAGAGATGCCAAATCATCTTGGATCTGC
1 ATCTGCTATGTCTTCGATCTGCTCCT-CGTC-AACACAAGAGATGCCAAATCATCTTGGATCTAC
*
66705664 TTC--------A-AT--GAAGGTCTA-
64 TTCGATGTGAAACATCCAAAGGT-TAG
* * * *
66705679 ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATAC-AGAGATGCCAAATCATCTTGGATCTACT
1 ATCTGCTATGTCTTCGATCTGCTCCTCGTC-AACACAAGAGATGCCAAATCATCTTGGATCTACT
*
66705743 TCGATGTGAAAACATCCGAAGGTTAG
65 TCGATGTG-AAACATCCAAAGGTTAG
* * *
66705769 ATTTACTATGTCTTAGATCTGCTC
1 ATCTGCTATGTCTTCGATCTGCTC
66705793 TCCGTCGAAT
Statistics
Matches: 498, Mismatches: 56, Indels: 86
0.78 0.09 0.13
Matches are distributed among these distances:
72 1 0.00
73 1 0.00
76 1 0.00
77 94 0.19
78 167 0.34
79 2 0.00
85 12 0.02
86 54 0.11
87 41 0.08
88 68 0.14
89 31 0.06
90 26 0.05
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (89 bp):
ATCTGCTATGTCTTCGATCTGCTCCTCGTCAACACAAGAGATGCCAAATCATCTTGGATCTACTT
CGATGTGAAACATCCAAAGGTTAG
Found at i:66705224 original size:218 final size:219
Alignment explanation
Indices: 66704750--66705240 Score: 810
Period size: 219 Copynumber: 2.3 Consensus size: 219
66704740 TGCTTCAATG
* * *
66704750 AAGGTCAGATCTGCTACGTCTTCGATCTGCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
*
66704815 TCGATTTGTTCTCTAACAGTACAGAGATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
66 TCGATTTGTTCTCTAACAATACAGAGATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
*
66704880 GAAGCTAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTGGA
131 GAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTGGA
*
66704945 TCTACTTCGATGTAAAGACATCCG
196 TCTACTTCGATGTAAAGACATCCA
* * *
66704969 AATGTTAGATCTGATATGTCTTTGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
* * *
66705034 TCGATTTGTTCTCTGACAATTCAGA-ATGT-TAAATCATCTTAGATCTGCTTCAGCGTAAACACG
66 TCGATTTGTTCTCTAACAATACAGAGAT-TCCAAATCATCTTAGATCTGCTTCAGCGTAAACACG
*
66705097 TGAAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATCTTG
130 TG-AAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTG
*
66705162 GATCTACTTCGATGTGAA-ACATCCA
194 GATCTACTTCGATGTAAAGACATCCA
66705187 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCG-ATATAGAGATGCCAA
1 AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAA
66705241 TCATCTTAGA
Statistics
Matches: 253, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
217 15 0.06
218 79 0.31
219 159 0.63
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (219 bp):
AAGGTTAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCTGTTTCT
TCGATTTGTTCTCTAACAATACAGAGATTCCAAATCATCTTAGATCTGCTTCAGCGTAAACACGT
GAAGCCAAATCTGCTATGTCTTCGATCTGCTCCTTGTCAACGCAAGGATGCCAAATCATATTGGA
TCTACTTCGATGTAAAGACATCCA
Found at i:66705358 original size:174 final size:175
Alignment explanation
Indices: 66705064--66705434 Score: 631
Period size: 174 Copynumber: 2.1 Consensus size: 175
66705054 TCAGAATGTT
*
66705064 AAATCATCTTAGATCTGCTTCAGCGTAAACACGTGAAAGCCAAATCTGCTATGTCTTCGATCTGC
1 AAATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
*
66705129 TCCTTGTCAACGCAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAACATCCAAAGGTTA
66 TCCTTGTCAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAACATCCAAAGGTTA
* * *
66705194 GATCTGCTATGTCTTCGATCTGCTCTCCGTC-GATATAGAGATGCC
131 GATCTGATATGTCTTCGATCTGCTC-CCGTCTAATACAGAGATGCC
66705239 -AATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
1 AAATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
* *
66705303 TCCTTGT-AACACAAGGATGCTAAATCATCTTGGATCTACTTCGATGTGAAAACATCCGAAGGTT
66 TCCTTGTCAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTG-AAACATCCAAAGGTT
66705367 AGATCTGATATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCC
130 AGATCTGATATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCC
*
66705413 AAATCATCTTGGATCTGCTTCA
1 AAATCATCTTAGATCTGCTTCA
66705435 ATGAAGGTCC
Statistics
Matches: 185, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
173 44 0.24
174 121 0.65
175 20 0.11
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (175 bp):
AAATCATCTTAGATCTGCTTCAGCGTAAACACATGAAAGCCAAATCTGCTATGTCTTCGATCTGC
TCCTTGTCAACACAAGGATGCCAAATCATCTTGGATCTACTTCGATGTGAAACATCCAAAGGTTA
GATCTGATATGTCTTCGATCTGCTCCCGTCTAATACAGAGATGCC
Found at i:66705504 original size:78 final size:78
Alignment explanation
Indices: 66705360--66705744 Score: 607
Period size: 78 Copynumber: 5.0 Consensus size: 78
66705350 GAAAACATCC
* *
66705360 GAAGGTTAGATCTGATATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
66705424 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * * *
66705437 GAAGGTCCA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATAAAGAGATGCCAAATCATCCT
1 GAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
66705501 GGATCTGCTTCAAT
65 GGATCTGCTTCAAT
*
66705515 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCC-AATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
66705579 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* * *
66705592 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
66705657 GATCTGCTTCAAT
66 GATCTGCTTCAAT
* *
66705670 GAAGGTCTA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
1 GAAGGTC-AGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
66705734 GGATCTACTTC
65 GGATCTGCTTC
66705745 GATGTGAAAA
Statistics
Matches: 283, Mismatches: 20, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
77 101 0.36
78 181 0.64
79 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (78 bp):
GAAGGTCAGATCTGCTATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAAT
Found at i:66705623 original size:37 final size:37
Alignment explanation
Indices: 66705502--66705623 Score: 95
Period size: 37 Copynumber: 3.2 Consensus size: 37
66705492 AATCATCCTG
*
66705502 GATCTGCTTCAATGAAGGTCAGATCTGCTGTGTCTTC
1 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTC
* ** * ** * * *
66705539 GATCTGCTCCCCGTCTAA--TACAGAGATGCCAATCATCTTG
1 GATCTGCT-TCAAT-GAAGGT-CAGATCTG-CTAT-GTCTTC
66705579 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTC
1 GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTC
66705616 GATCTGCT
1 GATCTGCT
66705624 CTCCGTCGAA
Statistics
Matches: 59, Mismatches: 19, Indels: 14
0.64 0.21 0.15
Matches are distributed among these distances:
37 21 0.36
38 13 0.22
39 12 0.20
40 13 0.22
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (37 bp):
GATCTGCTTCAATGAAGGTCAGATCTGCTATGTCTTC
Found at i:66705642 original size:155 final size:156
Alignment explanation
Indices: 66705360--66705744 Score: 616
Period size: 155 Copynumber: 2.5 Consensus size: 156
66705350 GAAAACATCC
*
66705360 GAAGGTTAGATCTGATATGTCTTCGATCTGCT-CCCGTCTAATACAGAGATGCCAAATCATCTTG
1 GAAGGTCAGATCTGATATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* * *
66705424 GATCTGCTTCAATGAAGGTCCAATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATAAAGAGATG
66 GATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCCCCGTCGAATAAAGAGATG
66705489 CCAAATCATCCTGGATCTGCTTCAAT
131 CCAAATCATCCTGGATCTGCTTCAAT
* *
66705515 GAAGGTCAGATCTGCTGTGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCC-AATCATCTTG
1 GAAGGTCAGATCTGATATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
* *
66705579 GATCTGCTTCAATGAAGGT-CAGATCTGCTATGTCTTCGATCTGCTCTCCGTCGAATATAGAGAT
66 GATCTGCTTCAATGAAGGTCCA-ATCTGCTATGTCTTCGATCTGCTCCCCGTCGAATAAAGAGAT
*
66705643 GCCAAATCATCTTGGATCTGCTTCAAT
130 GCCAAATCATCCTGGATCTGCTTCAAT
* *
66705670 GAAGGTCTA-ATCTGTTATGTCTTTGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
1 GAAGGTC-AGATCTGATATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTT
*
66705734 GGATCTACTTC
65 GGATCTGCTTC
66705745 GATGTGAAAA
Statistics
Matches: 213, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
154 2 0.01
155 170 0.80
156 41 0.19
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.32
Consensus pattern (156 bp):
GAAGGTCAGATCTGATATGTCTTCGATCTGCTCCCCGTCTAATACAGAGATGCCAAATCATCTTG
GATCTGCTTCAATGAAGGTCCAATCTGCTATGTCTTCGATCTGCTCCCCGTCGAATAAAGAGATG
CCAAATCATCCTGGATCTGCTTCAAT
Found at i:66713910 original size:18 final size:19
Alignment explanation
Indices: 66713877--66713912 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
66713867 GATATGATAC
*
66713877 TAAAATTATTTAAAAAAAT
1 TAAAATTATATAAAAAAAT
66713896 TAAAA-TATATAAAAAAA
1 TAAAATTATATAAAAAAA
66713913 ATCAGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATTATATAAAAAAAT
Found at i:66714226 original size:19 final size:19
Alignment explanation
Indices: 66714202--66714311 Score: 199
Period size: 19 Copynumber: 5.9 Consensus size: 19
66714192 AATCATATCT
66714202 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
66714221 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
66714240 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
66714258 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
66714275 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
66714294 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
66714312 TGAAGATTAT
Statistics
Matches: 88, Mismatches: 0, Indels: 6
0.94 0.00 0.06
Matches are distributed among these distances:
17 16 0.18
18 16 0.18
19 56 0.64
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:66714283 original size:54 final size:56
Alignment explanation
Indices: 66714195--66714311 Score: 197
Period size: 54 Copynumber: 2.1 Consensus size: 56
66714185 ATTAAAAAAT
66714195 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTGCATATCATATCTAAGATTG
66714250 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTGCATATCATATCTAAGATTG
66714304 CATATCAT
1 CATATCAT
66714312 TGAAGATTAT
Statistics
Matches: 59, Mismatches: 0, Indels: 6
0.91 0.00 0.09
Matches are distributed among these distances:
54 41 0.69
55 8 0.14
56 10 0.17
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (56 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTGCATATCATATCTAAGATTG
Found at i:66716295 original size:26 final size:26
Alignment explanation
Indices: 66716266--66716328 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
66716256 ATTTAAATAT
*
66716266 TTTTAATAAAAA-TAAAAAATATTTTA
1 TTTTAA-AAAAACAAAAAAATATTTTA
66716292 TTTTAAAAAAACAAAAAAATATTTTA
1 TTTTAAAAAAACAAAAAAATATTTTA
* *
66716318 ATATAAAAAAA
1 TTTTAAAAAAA
66716329 AGAGTTGCGC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
25 5 0.15
26 28 0.85
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (26 bp):
TTTTAAAAAAACAAAAAAATATTTTA
Found at i:66718322 original size:26 final size:24
Alignment explanation
Indices: 66718264--66718323 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
66718254 AGCATGATTT
*
66718264 TTGGAGATAATTTATTCAAAATAC
1 TTGGAGATAATTTATTCAAAAGAC
**
66718288 TTAAAGATAATTTATTCGAAAACGAC
1 TTGGAGATAATTTATTC-AAAA-GAC
66718314 TTGGAGATAA
1 TTGGAGATAA
66718324 AACTTCAAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
24 15 0.52
25 4 0.14
26 10 0.34
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.33
Consensus pattern (24 bp):
TTGGAGATAATTTATTCAAAAGAC
Found at i:66719112 original size:11 final size:10
Alignment explanation
Indices: 66719096--66719138 Score: 50
Period size: 11 Copynumber: 4.1 Consensus size: 10
66719086 CATATTTACA
66719096 TTTTATGTTAT
1 TTTTA-GTTAT
* *
66719107 TTTTATTTGT
1 TTTTAGTTAT
66719117 TTTTAGTTAAT
1 TTTTAGTT-AT
66719128 TTTTAGTTAT
1 TTTTAGTTAT
66719138 T
1 T
66719139 CTGAGTAATA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 13 0.48
11 14 0.52
ACGTcount: A:0.19, C:0.00, G:0.09, T:0.72
Consensus pattern (10 bp):
TTTTAGTTAT
Found at i:66721269 original size:46 final size:46
Alignment explanation
Indices: 66721187--66721278 Score: 130
Period size: 46 Copynumber: 2.0 Consensus size: 46
66721177 AGTGATATGA
* * *
66721187 ACAAAATATGTTTAACTAAATATAGTAGAAAGTGTAAGAATAGTTG
1 ACAAAATATGTTTAACTAAAGATAGTACAAAATGTAAGAATAGTTG
* * *
66721233 ACAAAATGTGTTTAACTCAAGATATTACAAAATGTAAGAATAGTTG
1 ACAAAATATGTTTAACTAAAGATAGTACAAAATGTAAGAATAGTTG
66721279 GCATATCTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.30
Consensus pattern (46 bp):
ACAAAATATGTTTAACTAAAGATAGTACAAAATGTAAGAATAGTTG
Found at i:66742491 original size:15 final size:15
Alignment explanation
Indices: 66742471--66742506 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
66742461 TCTTCGATCT
66742471 ACGATGACGATGATG
1 ACGATGACGATGATG
66742486 ACGATGACGATGATG
1 ACGATGACGATGATG
*
66742501 ATGATG
1 ACGATG
66742507 TTGAGAAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.33, C:0.11, G:0.33, T:0.22
Consensus pattern (15 bp):
ACGATGACGATGATG
Found at i:66748433 original size:40 final size:40
Alignment explanation
Indices: 66748375--66748601 Score: 400
Period size: 40 Copynumber: 5.7 Consensus size: 40
66748365 AGCATTGGAT
66748375 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
66748415 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
66748455 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
66748495 TATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
66748535 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
1 TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
* *
66748575 TATGTCCGGGTTAAGACCCGAAGGCAA
1 TATATCCGGGCTAAGACCCGAAGGCAA
66748602 ATGTGTTTGC
Statistics
Matches: 177, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 177 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
TATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTGA
Found at i:66754318 original size:23 final size:22
Alignment explanation
Indices: 66754292--66754344 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
66754282 TTGAGAGTGA
*
66754292 AAAAGAAATT-GAAGAAAGAAGAG
1 AAAAGAAATTAGAA-AAAGAA-AC
66754315 AAAATG-AATTAGAAAAAGAAAC
1 AAAA-GAAATTAGAAAAAGAAAC
66754337 AAAAGAAA
1 AAAAGAAA
66754345 AAGACGTGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 1 0.04
22 7 0.27
23 14 0.54
24 4 0.15
ACGTcount: A:0.70, C:0.02, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAGAAATTAGAAAAAGAAAC
Found at i:66759596 original size:5 final size:5
Alignment explanation
Indices: 66759586--66759613 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
66759576 GTATTTGTGA
66759586 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
66759614 GAACACACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:66772886 original size:26 final size:26
Alignment explanation
Indices: 66772857--66772932 Score: 82
Period size: 26 Copynumber: 2.8 Consensus size: 26
66772847 TCAATTTAAC
66772857 CCTAGGGGTATTTCAGTAATTTTGC-A
1 CCTAGGGGTATTT-AGTAATTTTGCAA
* *
66772883 CCTAGGGGTATAATAGTAATTTTTCATA
1 CCTAGGGGTAT-TTAGTAATTTTGCA-A
*
66772911 CATAGGGGTATTATAGTAATTT
1 CCTAGGGGTATT-TAGTAATTT
66772933 AGCTGTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
26 21 0.50
27 1 0.02
28 20 0.48
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
CCTAGGGGTATTTAGTAATTTTGCAA
Found at i:66774415 original size:26 final size:26
Alignment explanation
Indices: 66774379--66774436 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
66774369 CATGAAATTC
66774379 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
66774405 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
66774431 TTATCA
1 TTATCA
66774437 ATTTGTATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:66776731 original size:27 final size:26
Alignment explanation
Indices: 66776687--66776744 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
66776677 AATATTAAAT
* *
66776687 TATTTATATAATTTTATTATATATTA
1 TATTTTTAAAATTTTATTATATATTA
* *
66776713 TATTTTTAAAATTTGTATTTTTTATTA
1 TATTTTTAAAATTT-TATTATATATTA
66776740 T-TTTT
1 TATTTT
66776745 AATGGTGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 16 0.59
27 11 0.41
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (26 bp):
TATTTTTAAAATTTTATTATATATTA
Found at i:66777216 original size:19 final size:18
Alignment explanation
Indices: 66777168--66777226 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
66777158 CTCAACAAAA
*
66777168 TTTAC-ATTTTATAAATT
1 TTTACAATTTTTTAAATT
* *
66777185 TTTACAAATTTTTAATTT
1 TTTACAATTTTTTAAATT
66777203 TTTAACAATTTTTTTAAAATT
1 TTT-ACAA-TTTTTT-AAATT
66777224 TTT
1 TTT
66777227 TAAATAAAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 5 0.15
18 12 0.36
19 4 0.12
20 5 0.15
21 7 0.21
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTACAATTTTTTAAATT
Found at i:66777225 original size:21 final size:20
Alignment explanation
Indices: 66777174--66777268 Score: 79
Period size: 21 Copynumber: 4.7 Consensus size: 20
66777164 AAAATTTACA
66777174 TTTTATAAATTTTT-ACAAAT
1 TTTTA-AAATTTTTAACAAAT
* *
66777194 TTTT-AATTTTTTAACAATTT
1 TTTTAAAATTTTTAACAA-AT
*
66777214 TTTTAAAATTTTTTAA-ATAAA
1 TTTTAAAA-TTTTTAACA-AAT
* *
66777235 ATTTAAAATTTATTAACTAAT
1 TTTTAAAATTT-TTAACAAAT
66777256 TTTTAAAATTTTT
1 TTTTAAAATTTTT
66777269 TTATTTTTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
18 7 0.12
19 4 0.07
20 14 0.24
21 26 0.44
22 8 0.14
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTAAAATTTTTAACAAAT
Found at i:66777269 original size:10 final size:10
Alignment explanation
Indices: 66777174--66777269 Score: 58
Period size: 10 Copynumber: 9.4 Consensus size: 10
66777164 AAAATTTACA
66777174 TTTTATAAA-T
1 TTTTA-AAATT
66777184 TTTTACAAA-T
1 TTTTA-AAATT
66777194 TTTT--AATT
1 TTTTAAAATT
66777202 TTTTAACAATTT
1 TTTTAA-AA-TT
66777214 TTTTAAAATT
1 TTTTAAAATT
**
66777224 TTTTAAATAAA
1 TTTTAAA-ATT
*
66777235 ATTTAAAATT
1 TTTTAAAATT
*
66777245 TATTAACTAA-T
1 TTTTAA--AATT
66777256 TTTTAAAATT
1 TTTTAAAATT
66777266 TTTT
1 TTTT
66777270 TATTTTTCAA
Statistics
Matches: 68, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
7 2 0.03
8 5 0.07
9 2 0.03
10 32 0.47
11 17 0.25
12 10 0.15
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (10 bp):
TTTTAAAATT
Found at i:66782037 original size:11 final size:11
Alignment explanation
Indices: 66782023--66782069 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
66782013 GTCATGTTTG
66782023 GGTTTTCTTTT
1 GGTTTTCTTTT
66782034 GG--TTCTTTT
1 GGTTTTCTTTT
66782043 GGTTTTC-TTT
1 GGTTTTCTTTT
*
66782053 GGTTTTTTTTT
1 GGTTTTCTTTT
*
66782064 TGTTTT
1 GGTTTT
66782070 TCTCTAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
9 9 0.29
10 9 0.29
11 13 0.42
ACGTcount: A:0.00, C:0.06, G:0.19, T:0.74
Consensus pattern (11 bp):
GGTTTTCTTTT
Found at i:66782062 original size:20 final size:20
Alignment explanation
Indices: 66782023--66782060 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
66782013 GTCATGTTTG
66782023 GGTTTTCTTTTGGTTCTTTT
1 GGTTTTCTTTTGGTTCTTTT
66782043 GGTTTTC-TTTGGTT-TTTT
1 GGTTTTCTTTTGGTTCTTTT
66782061 TTTTGTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 7 0.39
20 7 0.39
ACGTcount: A:0.00, C:0.08, G:0.21, T:0.71
Consensus pattern (20 bp):
GGTTTTCTTTTGGTTCTTTT
Found at i:66782079 original size:22 final size:22
Alignment explanation
Indices: 66782039--66782080 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
66782029 CTTTTGGTTC
* *
66782039 TTTTGGTTTTCTTTGGTTTTTT
1 TTTTGGTTTTCTCTAGTTTTTT
*
66782061 TTTTGTTTTTCTCTAGTTTT
1 TTTTGGTTTTCTCTAGTTTT
66782081 ATTCCCCGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.02, C:0.07, G:0.14, T:0.76
Consensus pattern (22 bp):
TTTTGGTTTTCTCTAGTTTTTT
Found at i:66787871 original size:17 final size:17
Alignment explanation
Indices: 66787847--66787881 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
66787837 CAATATCATC
*
66787847 CAAAAAAAAGAAAAAATA
1 CAAAAAAAA-TAAAAATA
66787865 CAAAAAAAATAAAAATA
1 CAAAAAAAATAAAAATA
66787882 AGTTACACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.83, C:0.06, G:0.03, T:0.09
Consensus pattern (17 bp):
CAAAAAAAATAAAAATA
Found at i:66788322 original size:30 final size:30
Alignment explanation
Indices: 66788288--66788344 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
66788278 GTATATTATT
*
66788288 AATATTTTGATA-AATTAAATATAAATTTTA
1 AATATTTTGAAATAATT-AATATAAATTTTA
66788318 AATATTTTGAAATAATTAATATAAATT
1 AATATTTTGAAATAATTAATATAAATT
66788345 ATTTGTAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (30 bp):
AATATTTTGAAATAATTAATATAAATTTTA
Found at i:66789674 original size:16 final size:16
Alignment explanation
Indices: 66789653--66789684 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
66789643 CGTTTAGTTC
66789653 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
66789669 GCTGTAATGGAATAGA
1 GCTGTAATGGAATAGA
66789685 ATTGTAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.31, T:0.25
Consensus pattern (16 bp):
GCTGTAATGGAATAGA
Found at i:66789690 original size:16 final size:16
Alignment explanation
Indices: 66789654--66789692 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
66789644 GTTTAGTTCG
*
66789654 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAA
66789670 CTGTAATGGAATAGAA
1 CTGTAATGGAATAGAA
*
66789686 TTGTAAT
1 CTGTAAT
66789693 CAGTAATTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.26, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAA
Found at i:66792091 original size:51 final size:52
Alignment explanation
Indices: 66792021--66792133 Score: 147
Period size: 51 Copynumber: 2.2 Consensus size: 52
66792011 AATAAAGAAA
* * * * *
66792021 GAAAGAAAAAGGTTGCAACTCTGCAACTAAAGGGTTTTGTTGGCTTAAAGGGT
1 GAAA-AAAAAGGTTACAACTCTACAACCAAAGGATCTTGTTGGCTTAAAGGGT
*
66792074 GAAAAAAAA-GTTACAACTCTACAACCAAATGATCTTGTTGGCTTAAAGGGT
1 GAAAAAAAAGGTTACAACTCTACAACCAAAGGATCTTGTTGGCTTAAAGGGT
*
66792125 GAAGAAAAA
1 GAAAAAAAA
66792134 TGTAACACCC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
51 44 0.83
52 5 0.09
53 4 0.08
ACGTcount: A:0.41, C:0.12, G:0.23, T:0.24
Consensus pattern (52 bp):
GAAAAAAAAGGTTACAACTCTACAACCAAAGGATCTTGTTGGCTTAAAGGGT
Found at i:66792778 original size:17 final size:17
Alignment explanation
Indices: 66792756--66792789 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
66792746 CAGTTTAGCC
66792756 GATGAGAAACTGGGCAT
1 GATGAGAAACTGGGCAT
66792773 GATGAGAAACTGGGCAT
1 GATGAGAAACTGGGCAT
66792790 CAAATTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.35, T:0.18
Consensus pattern (17 bp):
GATGAGAAACTGGGCAT
Found at i:66796197 original size:6 final size:6
Alignment explanation
Indices: 66796154--66796225 Score: 65
Period size: 6 Copynumber: 11.8 Consensus size: 6
66796144 AGAAACAACC
* * * * *
66796154 ATAAAA ATAGAAA GAGAAAA ATAACA AGAAAG ATAAAA ATAAAA AAAAAA
1 ATAAAA ATA-AAA -ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA ATAAAA
*
66796204 AT-AAA ATAAAA ATAAAG ATAAA
1 ATAAAA ATAAAA ATAAAA ATAAA
66796226 TAGACTCAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
5 5 0.10
6 39 0.75
7 6 0.12
8 2 0.04
ACGTcount: A:0.78, C:0.01, G:0.08, T:0.12
Consensus pattern (6 bp):
ATAAAA
Found at i:66796209 original size:17 final size:17
Alignment explanation
Indices: 66796189--66796225 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
66796179 AAGAAAGATA
66796189 AAAATAAAAAAAAAAAT
1 AAAATAAAAAAAAAAAT
* *
66796206 AAAATAAAAATAAAGAT
1 AAAATAAAAAAAAAAAT
66796223 AAA
1 AAA
66796226 TAGACTCAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.14
Consensus pattern (17 bp):
AAAATAAAAAAAAAAAT
Found at i:66797153 original size:133 final size:129
Alignment explanation
Indices: 66796922--66797168 Score: 329
Period size: 133 Copynumber: 1.9 Consensus size: 129
66796912 TGAGCCTTTG
* *
66796922 GTGGCTTTAGCGGCGCTTTCTAAAAACGCCGCTAAAGATCGAGTATTAGCGGCACTTTTCTAAAA
1 GTGGCTTTAGCGGCGCTTTCTAAAAACGCCGCTAAAGATC-ACTATTAGCGACACTTTTCTAAAA
* * * *
66796987 AGCCGCTATATGTACACCTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAAAGAATTTTGTAATTTA
65 AGCCGCTATAAGTACACCTTTAGCGACGCTTTTTAAAAAACGCCGCTAAAGAATTTTGTAATTTA
* *
66797052 GTGGCTTTAGCGGCGCTTTTTTAAGAAACGCCGCTATAAGTAT-ACCT-TTAGCGACGCTTTT-T
1 GTGGCTTTAGCGGCGC-TTTCTAA-AAACGCCGCTA-AAG-ATCA-CTATTAGCGACACTTTTCT
66797114 AAAAAACGCCGCTATAAGTACACCTTTAGCGACGCTTTTTAAAAAACGCCGCTAA
61 -AAAAA-GCCGCTATAAGTACACCTTTAGCGACGCTTTTTAAAAAACGCCGCTAA
66797169 TGCTCGATTT
Statistics
Matches: 102, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
130 16 0.16
131 7 0.07
132 29 0.28
133 48 0.47
134 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (129 bp):
GTGGCTTTAGCGGCGCTTTCTAAAAACGCCGCTAAAGATCACTATTAGCGACACTTTTCTAAAAA
GCCGCTATAAGTACACCTTTAGCGACGCTTTTTAAAAAACGCCGCTAAAGAATTTTGTAATTTA
Found at i:66797184 original size:40 final size:40
Alignment explanation
Indices: 66797056--66797167 Score: 188
Period size: 40 Copynumber: 2.8 Consensus size: 40
66797046 AATTTAGTGG
* * *
66797056 CTTTAGCGGCGCTTTTTTAAGAAACGCCGCTATAAGTATAC
1 CTTTAGCGACGC-TTTTTAAAAAACGCCGCTATAAGTACAC
66797097 CTTTAGCGACGCTTTTTAAAAAACGCCGCTATAAGTACAC
1 CTTTAGCGACGCTTTTTAAAAAACGCCGCTATAAGTACAC
66797137 CTTTAGCGACGCTTTTTAAAAAACGCCGCTA
1 CTTTAGCGACGCTTTTTAAAAAACGCCGCTA
66797168 ATGCTCGATT
Statistics
Matches: 68, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
40 57 0.84
41 11 0.16
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (40 bp):
CTTTAGCGACGCTTTTTAAAAAACGCCGCTATAAGTACAC
Done.