Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 212 of 259
Found at i:67188542 original size:14 final size:14
Alignment explanation
Indices: 67188523--67188551 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
67188513 AACATTTAAA
67188523 AATTTTTAAAAATT
1 AATTTTTAAAAATT
67188537 AATTTTTAAAAATT
1 AATTTTTAAAAATT
67188551 A
1 A
67188552 TGACTAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTTTTAAAAATT
Found at i:67189119 original size:23 final size:22
Alignment explanation
Indices: 67189083--67189125 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
67189073 TGATCCACAT
*
67189083 ATTTTTTTTTCCTTTATTTTTC
1 ATTTTTTTTCCCTTTATTTTTC
*
67189105 ATTTTTTTCTCCCTTTGTTTT
1 ATTTTTTT-TCCCTTTATTTT
67189126 CCTTTCTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.07, C:0.16, G:0.02, T:0.74
Consensus pattern (22 bp):
ATTTTTTTTCCCTTTATTTTTC
Found at i:67189125 original size:22 final size:22
Alignment explanation
Indices: 67189083--67189126 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
67189073 TGATCCACAT
* *
67189083 ATTTTTTTTTCCTTTATTTTTC
1 ATTTTTTTTCCCTTTAGTTTTC
67189105 ATTTTTTTCTCCCTTT-GTTTTC
1 ATTTTTTT-TCCCTTTAGTTTTC
67189127 CTTTCTTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (22 bp):
ATTTTTTTTCCCTTTAGTTTTC
Found at i:67191133 original size:50 final size:50
Alignment explanation
Indices: 67191075--67191174 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
67191065 AAATTTAAAG
67191075 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
1 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
67191125 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
1 TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
67191175 CAATGTTGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36
Consensus pattern (50 bp):
TTAAACTAATGACCCCTGTTGCTTGGAATTCATTGATTTTGCCCATGCAC
Found at i:67194380 original size:22 final size:23
Alignment explanation
Indices: 67194331--67194391 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
67194321 TAAATAAATA
* *
67194331 TATATTTAAATTT-TTTTTATTG
1 TATAATTAAATTTATTTTTATTC
*
67194353 TTTAATTAAATTTATTTTTA-TC
1 TATAATTAAATTTATTTTTATTC
67194375 TATAATTTATAATTTAT
1 TATAA-TTA-AATTTAT
67194392 ATTGTTTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
22 16 0.50
23 9 0.28
24 7 0.22
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (23 bp):
TATAATTAAATTTATTTTTATTC
Found at i:67194676 original size:15 final size:15
Alignment explanation
Indices: 67194658--67194711 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
67194648 TATACTAAAA
67194658 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
67194673 ATATTTATAATTATAAT
1 ATATTTATTA-T-TAAT
*
67194690 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
67194707 ATATT
1 ATATT
67194712 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:67194697 original size:19 final size:19
Alignment explanation
Indices: 67194673--67194709 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
67194663 TATTATTAAT
*
67194673 ATATTTATAATTATAATAA
1 ATATTTATAATTAAAATAA
*
67194692 ATATTTATTATTAAAATA
1 ATATTTATAATTAAAATA
67194710 TTAATATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATATTTATAATTAAAATAA
Found at i:67194775 original size:16 final size:16
Alignment explanation
Indices: 67194744--67194780 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
67194734 ATCTGAATAA
67194744 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
67194760 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
67194776 TATTA
1 TATTA
67194781 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:67194821 original size:20 final size:22
Alignment explanation
Indices: 67194799--67194842 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
67194789 TTGAAATATT
67194799 AAATA-ATTTATTAAAATAATA
1 AAATATATTTATTAAAATAATA
* *
67194820 AAATATATTTATTATATTAATA
1 AAATATATTTATTAAAATAATA
67194842 A
1 A
67194843 TTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATATATTTATTAAAATAATA
Found at i:67194847 original size:16 final size:17
Alignment explanation
Indices: 67194821--67194852 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
67194811 AAAATAATAA
67194821 AATATATTTATTATATT
1 AATATATTTATTATATT
67194838 AATA-ATTTATTATAT
1 AATATATTTATTATAT
67194853 GACTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATATTTATTATATT
Found at i:67197727 original size:32 final size:32
Alignment explanation
Indices: 67197686--67197808 Score: 106
Period size: 33 Copynumber: 3.8 Consensus size: 32
67197676 GTACCCAGTG
* * *
67197686 GTACAACTTGAAAAGGTTATGTACAATTTGTGT
1 GTAC-ACTTGAAAAGGTAAGGTACACTTTGTGT
* * *
67197719 GTACACTTGGAAAGGTTAGGTATACTTTGTGT
1 GTACACTTGAAAAGGTAAGGTACACTTTGTGT
* * *
67197751 ATAC-CATATGAAAAGGAAAGGTATACTTTGTGT
1 GTACAC-T-TGAAAAGGTAAGGTACACTTTGTGT
*
67197784 GTACCACTTGAAAAGG-AATGTACAC
1 GTA-CACTTGAAAAGGTAAGGTACAC
67197809 CTCAAGTGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
31 1 0.01
32 35 0.47
33 36 0.48
34 2 0.03
35 1 0.01
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (32 bp):
GTACACTTGAAAAGGTAAGGTACACTTTGTGT
Found at i:67197773 original size:33 final size:33
Alignment explanation
Indices: 67197712--67197801 Score: 112
Period size: 33 Copynumber: 2.8 Consensus size: 33
67197702 TTATGTACAA
* * **
67197712 TTTGTGTGTA-CACTTGGAAAGGTTAGGTATAC
1 TTTGTGTATACCACTTGAAAAGGAAAGGTATAC
67197744 TTTGTGTATACCA-TATGAAAAGGAAAGGTATAC
1 TTTGTGTATACCACT-TGAAAAGGAAAGGTATAC
*
67197777 TTTGTGTGTACCACTTGAAAAGGAA
1 TTTGTGTATACCACTTGAAAAGGAA
67197802 TGTACACCTC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
32 10 0.20
33 39 0.78
34 1 0.02
ACGTcount: A:0.32, C:0.10, G:0.24, T:0.33
Consensus pattern (33 bp):
TTTGTGTATACCACTTGAAAAGGAAAGGTATAC
Found at i:67203910 original size:5 final size:5
Alignment explanation
Indices: 67203900--67203935 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
67203890 TTATGTTTTA
67203900 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
67203936 AAACTAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:67205212 original size:15 final size:15
Alignment explanation
Indices: 67205192--67205248 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
67205182 CGATGAATTT
67205192 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
67205207 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
67205222 ATTGAATTTATATTG
1 ATTGAATTTATATTG
67205237 ATTGAA-TTATAT
1 ATTGAATTTATAT
67205249 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:67205646 original size:23 final size:23
Alignment explanation
Indices: 67205620--67205706 Score: 92
Period size: 21 Copynumber: 4.0 Consensus size: 23
67205610 GCTTTATCGA
* *
67205620 TCAGGAACTTTATGTGTCGTATT
1 TCAGGCACCTTATGTGTCGTATT
*
67205643 TCAGGCACCTTGTGTGTCGTA--
1 TCAGGCACCTTATGTGTCGTATT
**
67205664 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTTATGTGTCGTATT
*
67205686 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTTATGTGTCGTAT
67205707 ACTGATCAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
21 34 0.63
22 2 0.04
23 18 0.33
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (23 bp):
TCAGGCACCTTATGTGTCGTATT
Found at i:67208813 original size:39 final size:39
Alignment explanation
Indices: 67208757--67208860 Score: 136
Period size: 39 Copynumber: 2.7 Consensus size: 39
67208747 TGTGTATCTG
*
67208757 GACTTAGGGTTCGCAGGCTATGTGCTAGAATTATATCCA
1 GACTTAGGGTCCGCAGGCTATGTGCTAGAATTATATCCA
* * *
67208796 GACTTAGGGTCCACAGGCTATGTGCTGGAATTATATCCG
1 GACTTAGGGTCCGCAGGCTATGTGCTAGAATTATATCCA
* ** *
67208835 GGCTTAAAGTCCGCAGGCTACGTGCT
1 GACTTAGGGTCCGCAGGCTATGTGCT
67208861 GGAAATATGT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 56 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (39 bp):
GACTTAGGGTCCGCAGGCTATGTGCTAGAATTATATCCA
Found at i:67208861 original size:39 final size:39
Alignment explanation
Indices: 67208768--67208908 Score: 149
Period size: 39 Copynumber: 3.6 Consensus size: 39
67208758 ACTTAGGGTT
* * * * **
67208768 CGCAGGCTATGTGCTAGAATTATATCCAGACTTAGGGTC
1 CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
* *
67208807 CACAGGCTATGTGCTGGAATTATATCCGGGCTTAAAGTC
1 CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
* *
67208846 CGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTC
1 CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
* * *
67208884 TCGCAGGCTTCGAGCTGGTATTATA
1 -CGCAGGCTACGTGCTGGAATTATA
67208909 CTGGGTTTAA
Statistics
Matches: 86, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
38 7 0.08
39 79 0.92
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
CGCAGGCTACGTGCTGGAATTATATCCGGGCTTAAAGTC
Found at i:67214724 original size:39 final size:39
Alignment explanation
Indices: 67214670--67214783 Score: 183
Period size: 39 Copynumber: 2.9 Consensus size: 39
67214660 ATTTGATGTG
*
67214670 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
67214709 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
67214748 TATCCCGACTTAAGGTCTGCAGGCTACGTGCTGGAA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAA
67214784 ATATGTCCGG
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 70 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
TATCCAGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:67214809 original size:39 final size:40
Alignment explanation
Indices: 67214670--67214820 Score: 130
Period size: 39 Copynumber: 3.9 Consensus size: 40
67214660 ATTTGATGTG
* ** * *
67214670 TATCCGGACTTAGGGTC-CGCAGGCTATGTGCTGGAATTA
1 TATCCCGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
* ** * *
67214709 TATCCAGACTTAGGGTC-CGCAGGCTATGTGCTGGAATTA
1 TATCCCGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
*
67214748 TATCCCGACTTAAGGTCT-GCAGGCTACGTGCTGGAAATA
1 TATCCCGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
* * * * *
67214787 TGTCCGGGC-TAAAGTCTCGCAGGCTTCGAGCTGG
1 TATCCCGACTTAAAGTCTCGCAGGCTACGTGCTGG
67214821 TATTATACCG
Statistics
Matches: 99, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
38 7 0.07
39 92 0.93
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCCGACTTAAAGTCTCGCAGGCTACGTGCTGGAAATA
Found at i:67214820 original size:78 final size:78
Alignment explanation
Indices: 67214670--67214827 Score: 176
Period size: 78 Copynumber: 2.0 Consensus size: 78
67214660 ATTTGATGTG
* * * * **
67214670 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCAGACTTAGGGTCCGCAGGCTA
1 TATCCCGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGCTA
*
67214735 TGTGCTGGAATTA
66 TGAGCTGGAATTA
* * * *
67214748 TATCCCGACTTAAGGTCTGCAGGCTACGTGCTGGAAATATGTCCGGGC-TAAAGTCTCGCAGGCT
1 TATCCCGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTC-CGCAGGCT
*
67214812 -TCGAGCTGGTATTA
65 AT-GAGCTGGAATTA
67214826 TA
1 TA
67214828 CCGGGTTTAA
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
77 6 0.09
78 60 0.91
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (78 bp):
TATCCCGACTTAAGGTCCGCAGGCTACGTGCTGGAAATATATCCAGACTTAAAGTCCGCAGGCTA
TGAGCTGGAATTA
Found at i:67216967 original size:21 final size:21
Alignment explanation
Indices: 67216943--67216984 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
67216933 TAAATTTTAC
*
67216943 TCAATTTAATACAATTCACAT
1 TCAATTCAATACAATTCACAT
* *
67216964 TCAATTCCATTCAATTCACAT
1 TCAATTCAATACAATTCACAT
67216985 CTCAGGCAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATTCACAT
Found at i:67216974 original size:10 final size:11
Alignment explanation
Indices: 67216954--67216984 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
67216944 CAATTTAATA
67216954 CAATTCACATT
1 CAATTCACATT
67216965 CAATTC-CATT
1 CAATTCACATT
67216975 CAATTCACAT
1 CAATTCACAT
67216985 CTCAGGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (11 bp):
CAATTCACATT
Found at i:67222983 original size:127 final size:126
Alignment explanation
Indices: 67222725--67223025 Score: 374
Period size: 126 Copynumber: 2.4 Consensus size: 126
67222715 ATATTTCATG
67222725 TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTTTGCATTCGACTAAAAT
1 TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGA--TTTTTGCATTCGACTAAAAT
*
67222790 ACAAAATATCCTTTTGAAATTTCGTCTATGCTTTCTTAAATTAAAACAAGGCAATATTTCGAA
64 ACAAAATATCCTTTTGAAATTTCGTCTATGCTTTCCTAAATTAAAACAAGGCAATATTTCGAA
* * *
67222853 TTTGGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTT-CATTCGATTAAAGTG
1 TTT-GGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTGCATTCGACTAAAATA
** * * ** *
67222917 CGGAATATTCCTTTTGAAATTTCAT-TCATGTTTTCCTAAATTAAAATGAGGCAATA-TTCAGTA
65 CAAAATA-TCCTTTTGAAATTTCGTCT-ATGCTTTCCTAAATTAAAACAAGGCAATATTTC-GAA
* * * * * *
67222980 TTTGGAAGTTCGATAAATCGTGCGCAATCGTGCTGGGTTTCGATTT
1 TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTT
67223026 ACCGTTTGGC
Statistics
Matches: 152, Mismatches: 17, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
126 58 0.38
127 51 0.34
128 3 0.02
129 40 0.26
ACGTcount: A:0.27, C:0.15, G:0.20, T:0.38
Consensus pattern (126 bp):
TTTGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTGCATTCGACTAAAATAC
AAAATATCCTTTTGAAATTTCGTCTATGCTTTCCTAAATTAAAACAAGGCAATATTTCGAA
Found at i:67223066 original size:126 final size:127
Alignment explanation
Indices: 67222725--67223066 Score: 318
Period size: 126 Copynumber: 2.7 Consensus size: 127
67222715 ATATTTCATG
* * ** * *
67222725 TTTGGG-AGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTTTGCATTCGACTAAAA
1 TTTGGGAAGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGA---TTTACCATTCGACCAAAG
* * *
67222789 TACAAAATATCCTTTTGAAATTTC-GTCTATGCTTTCTTAAATTAAAACAAGGCAATATTTCGAA
63 TGCCAAATATCCTTTTGAAATTTCAGTCTATGCTTTCCTAAATTAAAACAAGGCAATATTTCGAA
* * * ** **
67222853 TTTGGGGAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGATTAAAGTGC
1 TTTGGGAAGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGATTTACCATTCGACCAAAGTGC
** * * ** *
67222918 GGAATATTCCTTTTGAAATTTCATTC-ATGTTTTCCTAAATTAAAATGAGGCAATA-TTCAGTA
66 CAAATA-TCCTTTTGAAATTTCAGTCTATGCTTTCCTAAATTAAAACAAGGCAATATTTC-GAA
* * * * * *
67222980 TTT-GGAAGTTCGATAAATCGTGCGCAATCGTGCTGGGTTTCGATTTACCGTTTGGCCAAA-TAG
1 TTTGGGAAGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGATTTACCATTCGACCAAAGT-G
67223043 CCAAATATCCTTTTTGAAATTTCA
65 CCAAATATCC-TTTTGAAATTTCA
67223067 AATGCATGAA
Statistics
Matches: 181, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
125 4 0.02
126 87 0.48
127 45 0.25
128 8 0.04
129 37 0.20
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.37
Consensus pattern (127 bp):
TTTGGGAAGTTCGAGAAATCATGCCCAATCGTGCTGGGTTTCGATTTACCATTCGACCAAAGTGC
CAAATATCCTTTTGAAATTTCAGTCTATGCTTTCCTAAATTAAAACAAGGCAATATTTCGAA
Found at i:67232925 original size:64 final size:64
Alignment explanation
Indices: 67232822--67232949 Score: 211
Period size: 64 Copynumber: 2.0 Consensus size: 64
67232812 TCATTCATGA
* *
67232822 TACATCTAGTTAGGGGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATAAGCAT
1 TACATCTAGTTAGGAGCATTTGATTCATTGCGATCATAGCATCCTAATTATTTGACATAAGCAT
* * *
67232886 TACATCTAGTTAGGAGCATTTGATTCATTGCGATTATAGCATCCTAGTTATTTGGCATAAGCAT
1 TACATCTAGTTAGGAGCATTTGATTCATTGCGATCATAGCATCCTAATTATTTGACATAAGCAT
67232950 AGATACAGCA
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 59 1.00
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.38
Consensus pattern (64 bp):
TACATCTAGTTAGGAGCATTTGATTCATTGCGATCATAGCATCCTAATTATTTGACATAAGCAT
Found at i:67233113 original size:84 final size:84
Alignment explanation
Indices: 67233017--67233350 Score: 560
Period size: 84 Copynumber: 4.0 Consensus size: 84
67233007 GGTGAATTCA
* *
67233017 CAAGCCTTAACCCCCCAAGCAGTAGGGTAATAGGCTGGAAAATACAGATCTCCCCTAAACAGTAG
1 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAG
* *
67233082 TGGAGCAAATCGAAGACAG
66 TGGAACAGATCGAAGACAG
*
67233101 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAATAGTAG
1 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAG
*
67233166 TGGAACAGATCGAATACAG
66 TGGAACAGATCGAAGACAG
* *
67233185 CAAGCCTTAACCCCCTAAGCAGTAGGGTAGCAGGATGGAAAATACAGATCTCCCCTAAACAGTAG
1 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAG
* * *
67233250 TGGAGCAGATCAAAGACAT
66 TGGAACAGATCGAAGACAG
*
67233269 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACATATCTCCCCTAAACAGTAG
1 CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAG
67233334 TGGAACAGATCGAAGAC
66 TGGAACAGATCGAAGAC
67233351 GGGTTCCTAT
Statistics
Matches: 232, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
84 232 1.00
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.17
Consensus pattern (84 bp):
CAAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCTCCCCTAAACAGTAG
TGGAACAGATCGAAGACAG
Found at i:67233209 original size:44 final size:44
Alignment explanation
Indices: 67233068--67233301 Score: 115
Period size: 44 Copynumber: 5.5 Consensus size: 44
67233058 ATACAGATCT
* * *
67233068 CCCCTAAACAGTAGTGG-AGCAAATCGAAGACAGCAAGCCTTAAC
1 CCCCTAAACAGTAG-GGTAACAGATCGAATACAGCAAGCCTTAAC
* * * *
67233112 CCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAG--A-TC-T---
1 CCCCTAAACAGTAGGGTAACA-GATCG--AATACAGCAAGCCTTAAC
*
67233152 CCCCTAAATAGTAGTGG-AACAGATCGAATACAGCAAGCCTTAAC
1 CCCCTAAACAGTAG-GGTAACAGATCGAATACAGCAAGCCTTAAC
* * * *
67233196 CCCCTAAGCAGTAGGGTAGCAGGATGGAAAATACAG--A-TC-T---
1 CCCCTAAACAGTAGGGTAACA-GATCG--AATACAGCAAGCCTTAAC
* * * *
67233236 CCCCTAAACAGTAGTGG-AGCAGATCAAAGACATCAAGCCTTAAC
1 CCCCTAAACAGTAG-GGTAACAGATCGAATACAGCAAGCCTTAAC
*
67233280 CCCCTAAGCAGTAGGGTAACAG
1 CCCCTAAACAGTAGGGTAACAG
67233302 GCTGGAAAAT
Statistics
Matches: 140, Mismatches: 25, Indels: 50
0.65 0.12 0.23
Matches are distributed among these distances:
37 12 0.09
39 8 0.06
40 35 0.25
41 6 0.04
43 8 0.06
44 50 0.36
45 8 0.06
47 13 0.09
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (44 bp):
CCCCTAAACAGTAGGGTAACAGATCGAATACAGCAAGCCTTAAC
Found at i:67233248 original size:40 final size:40
Alignment explanation
Indices: 67233112--67233341 Score: 118
Period size: 40 Copynumber: 5.5 Consensus size: 40
67233102 AAGCCTTAAC
* *
67233112 CCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACAGATCT
1 CCCCTAAACAGTAGGGTAACAGGATGGAAAATACAGATCT
* * *
67233152 CCCCTAAATAGTAGTGG-AACA-GATCG--AATACAGCAAGCCTT
1 CCCCTAAACAGTAG-GGTAACAGGATGGAAAATACAG--A-TC-T
* *
67233193 AACCCCCTAAGCAGTAGGGTAGCAGGATGGAAAATACAGATCT
1 ---CCCCTAAACAGTAGGGTAACAGGATGGAAAATACAGATCT
* * * *
67233236 CCCCTAAACAGTAGTGG-AGCA-GAT-CAAAGACATCA-AGCCTT
1 CCCCTAAACAGTAG-GGTAACAGGATGGAAA-ATA-CAGA-TC-T
* * *
67233277 AACCCCCTAAGCAGTAGGGTAACAGGCTGGAAAATACATATCT
1 ---CCCCTAAACAGTAGGGTAACAGGATGGAAAATACAGATCT
67233320 CCCCTAAACAGTAGTGG-AACAG
1 CCCCTAAACAGTAG-GGTAACAG
67233342 ATCGAAGACG
Statistics
Matches: 144, Mismatches: 21, Indels: 50
0.67 0.10 0.23
Matches are distributed among these distances:
37 7 0.05
38 3 0.02
39 10 0.07
40 55 0.38
41 8 0.06
43 6 0.04
44 35 0.24
45 10 0.07
46 3 0.02
47 7 0.05
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (40 bp):
CCCCTAAACAGTAGGGTAACAGGATGGAAAATACAGATCT
Found at i:67235667 original size:127 final size:127
Alignment explanation
Indices: 67235411--67235722 Score: 407
Period size: 126 Copynumber: 2.5 Consensus size: 127
67235401 AACATAAGGA
* *
67235411 AATATTTCGTGTTTGG-GAGTTTGAGAGATCATGCCCAATCGTGCTGGGTTTCGATTTTTTTGCA
1 AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA--TTTTTGCA
* *
67235475 TTCGACTAAAATACAAAATATCCTTTTGAAATTTCGTCTATGCTTTCTTAAATTAAAACGAGGC
64 TTCGACTAAAATACAAAATATCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGC
*
67235539 AATATTTCGAATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTT-CATT
1 AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTGCATT
* * ** * *
67235603 CGATTAAAATGCGGAATATTCCTTTTGAAATTTCATCCATGTTTTCTTAAATTAAAATGAGGC
66 CGACTAAAATACAAAATA-TCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGC
* * * * * *
67235666 AATA-TTCAGTATTTAGA-AGTTCGATAAATCGTGCGCAATCGTGTTGGGTTTCGATTT
1 AATATTTC-GTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTT
67235723 ACTGTTTGGC
Statistics
Matches: 163, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
126 56 0.34
127 56 0.34
128 14 0.09
129 37 0.23
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.38
Consensus pattern (127 bp):
AATATTTCGTATTTGGAGAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTGCATT
CGACTAAAATACAAAATATCCTTTTGAAATTTCATCCATGCTTTCTTAAATTAAAACGAGGC
Found at i:67239112 original size:64 final size:64
Alignment explanation
Indices: 67239011--67239138 Score: 229
Period size: 64 Copynumber: 2.0 Consensus size: 64
67239001 TACCTCATTA
67239011 TTGAATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAGAAAAATAATG
1 TTGAATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAGAAAAATAATG
* * *
67239075 TTGAATATTCTGTCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAGGAAAATAATG
1 TTGAATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAGAAAAATAATG
67239139 CGCTTTAACG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 61 1.00
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (64 bp):
TTGAATATCCTATCGTTTAAATTTACTCATAGGTCTTCATCAACTCTTAAATAGAAAAATAATG
Found at i:67240861 original size:6 final size:6
Alignment explanation
Indices: 67240852--67240887 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
67240842 TTTGTTTTTT
67240852 TACTCC TACTCC TACTCC TACTCC TACTCC TACTCC
1 TACTCC TACTCC TACTCC TACTCC TACTCC TACTCC
67240888 ATTCAACTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (6 bp):
TACTCC
Found at i:67241691 original size:7 final size:7
Alignment explanation
Indices: 67241676--67241724 Score: 53
Period size: 7 Copynumber: 6.6 Consensus size: 7
67241666 AGAGAAAGAA
*
67241676 TAAAATT
1 TAAATTT
67241683 TAAATTT
1 TAAATTT
67241690 TAAATTTT
1 TAAA-TTT
*
67241698 AATAAAATT
1 --TAAATTT
67241707 TAAATTT
1 TAAATTT
67241714 TAAATTT
1 TAAATTT
67241721 TAAA
1 TAAA
67241725 AATAACATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
7 27 0.75
8 3 0.08
9 2 0.06
10 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (7 bp):
TAAATTT
Found at i:67241706 original size:24 final size:24
Alignment explanation
Indices: 67241674--67241723 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
67241664 TTAGAGAAAG
67241674 AATAAAATTTAAATTTTAAATTTT
1 AATAAAATTTAAATTTTAAATTTT
67241698 AATAAAATTTAAATTTTAAATTTT
1 AATAAAATTTAAATTTTAAATTTT
67241722 AA
1 AA
67241724 AAATAACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AATAAAATTTAAATTTTAAATTTT
Found at i:67241708 original size:17 final size:17
Alignment explanation
Indices: 67241683--67241716 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67241673 GAATAAAATT
*
67241683 TAAATTTTAAATTTTAA
1 TAAAATTTAAATTTTAA
67241700 TAAAATTTAAATTTTAA
1 TAAAATTTAAATTTTAA
67241717 ATTTTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TAAAATTTAAATTTTAA
Found at i:67247641 original size:40 final size:40
Alignment explanation
Indices: 67247576--67247651 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
67247566 GTATCGTATA
*
67247576 TAGCCGAAGCTATTCCAACTCGCACACTTAGTGCCATTTG
1 TAGCCGAAGCTATTCAAACTCGCACACTTAGTGCCATTTG
*
67247616 TAGCCGAAGCTATATTAAACT-GCACACTTAGTGCCA
1 TAGCCGAAGCTAT-TCAAACTCGCACACTTAGTGCCA
67247652 AGCATAGTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
40 28 0.85
41 5 0.15
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (40 bp):
TAGCCGAAGCTATTCAAACTCGCACACTTAGTGCCATTTG
Found at i:67254866 original size:20 final size:20
Alignment explanation
Indices: 67254838--67254875 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
67254828 GGGAAGAGGA
*
67254838 GGGAGAGAAAAGAGGGAGCG
1 GGGAAAGAAAAGAGGGAGCG
*
67254858 GGGAAAGAAGAGAGGGAG
1 GGGAAAGAAAAGAGGGAG
67254876 GGAGAGCTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.55, T:0.00
Consensus pattern (20 bp):
GGGAAAGAAAAGAGGGAGCG
Found at i:67256118 original size:73 final size:72
Alignment explanation
Indices: 67256020--67256268 Score: 342
Period size: 73 Copynumber: 3.4 Consensus size: 72
67256010 ATGTGAACTG
* * *
67256020 AGGCTCAACTCACTTT-TCGTAATATGAGTTGATTTTTTTGACAACA-AAATTGAAATTACCTCA
1 AGGCTCAACTCA-TTTCTCGCAATATGAGTTGA--ATTTTGAAAACAGAAATTGAAATTACCTCA
*
67256083 GCGTGTCCTA
63 ACGTGTCCTA
*
67256093 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAAGCAGAAATTGAAAATACCTCAAC
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAA-CAGAAATTGAAATTACCTCAAC
* *
67256158 GTGTCTTG
65 GTGTCCTA
*
67256166 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAATG
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
*
67256231 TGT-CTT
66 TGTCCTA
* *
67256237 GGGCTCAACTTATTTCTCGCAATATGAGTTGA
1 AGGCTCAACTCATTTCTCGCAATATGAGTTGA
67256269 TTCTTTCAAA
Statistics
Matches: 160, Mismatches: 13, Indels: 8
0.88 0.07 0.04
Matches are distributed among these distances:
71 39 0.24
72 29 0.18
73 92 0.57
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (72 bp):
AGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACG
TGTCCTA
Found at i:67256406 original size:71 final size:71
Alignment explanation
Indices: 67256290--67256607 Score: 280
Period size: 71 Copynumber: 4.3 Consensus size: 71
67256280 ACATAATGAC
* *
67256290 GAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
67256355 GATTTT
66 GATTTT
* * * * **
67256361 GAAAACAGAAATTGCAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
67256426 GATTCTTT
66 GA-T-TTT
* * ** * *
67256434 CAAAACA-TAATGACGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCT
1 GAAAACAGAAATG--G-----A-AAAT---ACCT--C--AGCGTGACCTGAGGCTCAACTCACCT
67256498 CTCGCAATATGAGTTGATTTT
51 CTCGCAATATGAGTTGATTTT
* * * *
67256519 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTT
1 GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
67256583 GATTTT
66 GATTTT
* *
67256589 GAAAAACAAAAATTGAAAA
1 G-AAAACAGAAATGGAAAA
67256608 ACAGAAATTG
Statistics
Matches: 196, Mismatches: 32, Indels: 38
0.74 0.12 0.14
Matches are distributed among these distances:
70 23 0.12
71 94 0.48
72 4 0.02
73 10 0.05
74 1 0.01
75 2 0.01
78 3 0.02
79 1 0.01
80 3 0.02
83 2 0.01
84 1 0.01
85 10 0.05
86 4 0.02
87 38 0.19
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (71 bp):
GAAAACAGAAATGGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTT
Found at i:67256473 original size:158 final size:156
Alignment explanation
Indices: 67256130--67257149 Score: 1001
Period size: 158 Copynumber: 6.5 Consensus size: 156
67256120 GTTGAATTTT
* * **
67256130 GAAAAGCAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 GAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
67256195 TGAATTTTGAAAACAGAAATTGAAATTACCTCAATGTGTCTTG-GGCTCAACTTATTTCTCGCAA
65 TG-ATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAA
67256259 TATGAGTTGATTCTTTCAAAAACATAATGA
129 TATGAGTTGATT-TTTC-AAAACATAATGA
* * * *
67256289 CGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 -GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
67256354 TGATTTTGAAAACAGAAATTGCAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAAT
65 TGATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAAT
67256419 ATGAGTTGATTCTTTCAAAACATAATGA
130 ATGAGTTGATT-TTTCAAAACATAATGA
* * * *
67256447 CGAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 -GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
67256512 TGATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TTCTCGCAAT
65 TGATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAAT
** *
67256576 ATGAGTTGATTTTGAAAAACAAAAATTGA
130 ATGAGTTGATTTTTCAAAAC-ATAA-TGA
* *
67256605 -AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
67256669 GATTTAGAAAACAGACATAAAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCC-AAGGCTCAA
66 GATTT------------TGAAAACAGAAATTGAAA-TTACCTC-A-ACGTG-TCCTGAGGCTCAA
67256732 CTCACCTT-TCGCAATATGAGTTGA-TTTT-------T--T--
115 CTCA-CTTCTCGCAATATGAGTTGATTTTTCAAAACATAATGA
** * * * *
67256762 GAAAGTAGAATTTGAAAATACCTCGGCATG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
67256826 GATTTTTAAAAAACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAA
66 GA-TTTT-GAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAA
* * *
67256890 TATGAGTTAATTTTTGAAAACATAAAT-T
129 TATGAGTTGATTTTTCAAAACAT-AATGA
* ** *
67256918 G--AACAGGAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * *
67256981 GATTTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGC
66 GA--TT-TTGAAAA-CAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGC
67257046 AATATGAGTTGATTTTT-------T--T--
127 AATATGAGTTGATTTTTCAAAACATAATGA
* * * * *
67257065 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTAAACTCTCCTCTTGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
67257130 GATTTTGAAAAACAAAAATT
66 GATTTTG-AAAACAGAAATT
67257150 AAAAGGCTTA
Statistics
Matches: 746, Mismatches: 67, Indels: 108
0.81 0.07 0.12
Matches are distributed among these distances:
143 4 0.01
144 31 0.04
145 7 0.01
146 23 0.03
147 14 0.02
148 1 0.00
149 56 0.08
151 1 0.00
152 1 0.00
154 19 0.03
155 35 0.05
156 78 0.10
157 62 0.08
158 256 0.34
159 91 0.12
160 5 0.01
168 20 0.03
169 3 0.00
170 19 0.03
171 18 0.02
172 2 0.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (156 bp):
GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACTTCTCGCAATA
TGAGTTGATTTTTCAAAACATAATGA
Found at i:67256606 original size:14 final size:14
Alignment explanation
Indices: 67256587--67256621 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
67256577 TGAGTTGATT
67256587 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
*
67256601 TTGAAAAACAGAAA
1 TTGAAAAACAAAAA
67256615 TTGAAAA
1 TTGAAAA
67256622 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.66, C:0.06, G:0.11, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:67256638 original size:243 final size:230
Alignment explanation
Indices: 67256290--67257140 Score: 976
Period size: 229 Copynumber: 3.7 Consensus size: 230
67256280 ACATAATGAC
* * * *
67256290 GAAAACAGAAATGGAAAATACCTCGGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * **
67256355 GA--TTTT-GAAAACAGAAATTGCAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCA
66 GATTTTTTAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* * **
67256417 ATATGAGTTGATTCTTTCAAAACATAATGACGAAAACAGAAATGGAAAATACCTCGGTGTGACCT
131 ATATGAGTTGATT-TTTGAAAACATAAT-A-GAAAACAGAAATTGAAAATACCTCAATGTGACCT
67256482 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
193 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* *
67256519 GAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
67256583 GATTTTGAAAAACAAAAATTGAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAAC
66 GATTTT------------TTAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
* * * *
67256648 TCACCTCTTGCAATATGAGTTGA-TTTAGAAAACAGACATA-AAAACAGAAATTGAAAGTGA-CT
119 TCACCTCTCGCAATATGAGTTGATTTTTGAAAACATA-ATAGAAAACAGAAATTGAAAAT-ACCT
* * *
67256710 CAACACGTGAGCC-AAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTT
182 C-A-ATGTGA-CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
** * * * *
67256762 GAAAGTAGAATTTGAAAATACCTCGGCATG-CCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
67256826 GA-TTTTTAAAAAACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
66 GATTTTTTAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
* * * * *
67256889 ATATGAGTTAATTTTTGAAAACATAAATTG--AACAGGAATTGAAAATACCTCAATGTGTCTTGA
131 ATATGAGTTGATTTTTGAAAACAT-AATAGAAAACAGAAATTGAAAATACCTCAATGTGACCTGA
67256952 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTT
195 GGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TT
** *
67256990 GAAAAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 GAAAA-CAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
** * * * *
67257055 TGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTAAACTCTCCTCTTGC
65 TGATTTTTTAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
67257120 AATATGAGTTGA-TTTTGAAAA
130 AATATGAGTTGATTTTTGAAAA
67257141 ACAAAAATTA
Statistics
Matches: 527, Mismatches: 62, Indels: 64
0.81 0.09 0.10
Matches are distributed among these distances:
226 1 0.00
227 39 0.07
228 26 0.05
229 133 0.25
230 57 0.11
231 20 0.04
232 55 0.10
239 19 0.04
240 1 0.00
241 45 0.09
242 25 0.05
243 106 0.20
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (230 bp):
GAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTAAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCA
ATATGAGTTGATTTTTGAAAACATAATAGAAAACAGAAATTGAAAATACCTCAATGTGACCTGAG
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
Found at i:67256680 original size:85 final size:84
Alignment explanation
Indices: 67256520--67256758 Score: 281
Period size: 85 Copynumber: 2.8 Consensus size: 84
67256510 GTTGATTTTG
* * * *
67256520 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
*
67256584 ATTTTGAAAAACAAAAATTGA
66 ATTTAGAAAAACAAAAA-T-A
67256605 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
* *
67256670 ATTTAG-AAAACAGACATA
66 ATTTAGAAAAACAAAAATA
* * * *
67256688 AAAACAGAAATTGAAAGTGA-CTCAACACGTGAGCC-AAGGCTCAACTCACCT-TTCGCAATATG
1 AAAACAGAAATTGAAAAT-ACCTCAGCA--TG-TCCTGAGGCTCAACTCACCTCTT-GCAATATG
67256750 AGTTGATTT
61 AGTTGATTT
67256759 TTTGAAAGTA
Statistics
Matches: 137, Mismatches: 11, Indels: 12
0.86 0.07 0.08
Matches are distributed among these distances:
83 24 0.18
84 4 0.03
85 86 0.63
86 23 0.17
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (84 bp):
AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
ATTTAGAAAAACAAAAATA
Found at i:67256871 original size:72 final size:73
Alignment explanation
Indices: 67256724--67257153 Score: 454
Period size: 72 Copynumber: 5.8 Consensus size: 73
67256714 ACGTGAGCCA
* ** ** * *
67256724 AGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTTGAAAGTAGAATTTGAAAATACCTCGGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTGAAAATACCTCAGC
* *
67256789 ATG-CCCG
66 GTGTCCTG
*
67256796 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACA-AAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTGAAAATACCTCAGC
67256860 GTGTCCTG
66 GTGTCCTG
* *
67256868 AGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACATAAATTGAACAGGAATTGAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT------A-AAA---AACAGAAATTGAAA
** *
67256933 ATACCTCAATGTGTCTTG
56 ATACCTCAGCGTGTCCTG
* *
67256951 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAAAGCAGAAATTGAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-TTAAAAAACAGAAATTGAAAATACCTCA
** *
67257016 ATGTGTCTTG
64 GCGTGTCCTG
** * *
67257026 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAAACAGAAATTGAAAATACCTCAG
67257091 CGTGTCCTG
65 CGTGTCCTG
* * * * *
67257100 AGGCTAAACTCTCCTCTTGCAATATGAGTTGA-TTTTGAAAAACAAAAATT-AAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTGAAAA
67257154 GGCTTAACTC
Statistics
Matches: 308, Mismatches: 36, Indels: 29
0.83 0.10 0.08
Matches are distributed among these distances:
71 21 0.07
72 93 0.30
74 59 0.19
75 66 0.21
78 4 0.01
79 3 0.01
82 4 0.01
83 53 0.17
84 3 0.01
85 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (73 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTGAAAATACCTCAGC
GTGTCCTG
Found at i:67256986 original size:83 final size:82
Alignment explanation
Indices: 67256837--67257135 Score: 312
Period size: 75 Copynumber: 3.8 Consensus size: 82
67256827 ATTTTTAAAA
* ** * *
67256837 AACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-AA
1 AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
67256900 TTTTTGAAAACATAAATTG
66 TTTTTG-AAACA-AAATTG
*
67256919 AACAGGAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
67256984 TTTCTTG----AAAA--G
66 TTT-TTGAAACAAAATTG
67256996 --CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
67257059 TTTTTTG--AC-------
65 TTTTTTGAAACAAAATTG
* ** * * * *
67257068 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTAAACTCTCCTCTTGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
67257133 TTT
66 TTT
67257136 GAAAAACAAA
Statistics
Matches: 195, Mismatches: 14, Indels: 25
0.83 0.06 0.11
Matches are distributed among these distances:
73 4 0.02
74 55 0.28
75 64 0.33
76 4 0.02
77 1 0.01
79 3 0.02
80 1 0.01
82 4 0.02
83 52 0.27
84 4 0.02
85 3 0.02
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Consensus pattern (82 bp):
AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTTGAAACAAAATTG
Found at i:67257013 original size:229 final size:231
Alignment explanation
Indices: 67256324--67257152 Score: 846
Period size: 243 Copynumber: 3.5 Consensus size: 231
67256314 GGTGTGACCT
* *
67256324 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT-GAAAACAGAAATTGCAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAACAGAAATTGAAATTACCTCA
** * * ***
67256386 GCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTCTTTCAAAACATAATGACGAA
66 GCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-T-TTTGAAAACA-AA--AATTA
* * * * *
67256451 AACAGAAATGGAAAAT-AC-C-TC-GGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGT
126 AACAGAAATTGAAAATGACTCAACACGTGAG-CC-AAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
67256512 TGA--TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCT
189 TGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACATGTCCC
* *
67256553 GAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTGAAAAACAGAAATT
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT------------TTAAAAAACAGAAATT
* * *
67256617 GAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTAGAAAACA
54 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTGAAAACA
* * * * *
67256682 GACATAAAAACAGAAATTGAAAGTGACTCAACACGTGAGCCAAGGCTCAACTCACCTTTCGCAAT
119 AAAAT-TAAACAGAAATTGAAAATGACTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAAT
* * **
67256747 ATGAGTTGATTTTTTGAAAGTAGAATTTGAAAATACCTCGGCATG-CCC
183 ATGAGTTGATTTTTTGAAAGCAGAAATTGAAAATACCTCAACATGTCCC
67256795 GAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTAAAAAACA-AAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAACAGAAATTGAAATTACCTCA
* * * *
67256858 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAACATAAATTGAACA
66 GCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTGAAAACAAAAATTAAACA
* * * **
67256923 GGAATTGAAAAT-ACCTC-A-ATGTG-TCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
130 GAAATTGAAAATGA-CTCAACACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
** **
67256984 TTTCTTGAAAAGCAGAAATTGAAAATACCTCAATGTGTCTT
193 TTT-TTG-AAAGCAGAAATTGAAAATACCTCAACATGTCCC
** *
67257025 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAACAGAAATTGAAATTACCTCA
* *
67257090 GCGTGTCCTGAGGCTAAACTCTCCTCTTGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
66 GCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
67257153 AGGCTTAACT
Statistics
Matches: 505, Mismatches: 63, Indels: 61
0.80 0.10 0.10
Matches are distributed among these distances:
226 1 0.00
227 39 0.08
228 23 0.05
229 108 0.21
230 58 0.11
231 15 0.03
232 68 0.13
239 16 0.03
240 3 0.01
241 40 0.08
242 24 0.05
243 110 0.22
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (231 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTAAAAAACAGAAATTGAAATTACCTCA
GCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTGAAAACAAAAATTAAACAG
AAATTGAAAATGACTCAACACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGAAAGCAGAAATTGAAAATACCTCAACATGTCCC
Found at i:67257122 original size:74 final size:74
Alignment explanation
Indices: 67256919--67257135 Score: 335
Period size: 75 Copynumber: 2.9 Consensus size: 74
67256909 ACATAAATTG
*
67256919 AACAGGAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
67256984 TTTCTTGAA
66 TTTCTTGAA
67256993 AAGCAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AA-CAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
67257058 TTTTTTTGAC
65 TTTTCTTGAA
* ** * * * *
67257068 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTAAACTCTCCTCTTGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
67257133 TTT
66 TTT
67257136 GAAAAACAAA
Statistics
Matches: 132, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
74 61 0.46
75 71 0.54
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (74 bp):
AACAGAAATTGAAAATACCTCAATGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTCTTGAA
Found at i:67257330 original size:73 final size:71
Alignment explanation
Indices: 67257153--67257330 Score: 200
Period size: 73 Copynumber: 2.5 Consensus size: 71
67257143 AAAAATTAAA
* * *
67257153 AGGCTTAACTCACTTCTCGCAATATGAGTCAA--TTTAAAACATAAACTAAAAGTACCTCGGCGT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAACAAAAACTAAAAGTACCTCAGCGT
*
67257216 GCCCCG
66 GACCCG
* * ** * *
67257222 AGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTGAAACAAAAGGAATTAAAA-TACCTCAG
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAAC-AAA--AACTAAAAGTACCTCAG
*
67257286 CGTGACCTG
63 CGTGACCCG
*
67257295 AGGCTTGACTCACCTCTCGCAATATGAGTCAATTTT
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTT
67257331 CCTTGGAAAG
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
69 27 0.31
71 7 0.08
72 2 0.02
73 45 0.51
74 7 0.08
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (71 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTTTAAAACAAAAACTAAAAGTACCTCAGCGT
GACCCG
Found at i:67273201 original size:40 final size:40
Alignment explanation
Indices: 67273134--67273209 Score: 100
Period size: 40 Copynumber: 1.9 Consensus size: 40
67273124 GTATCGTATA
* *
67273134 TAGCCGAAGCTATTCCAACTCGCACACTTAGTGCCATTTG
1 TAGCCGAAGCTATTCAAACTCGCACACTTAATGCCATTTG
* *
67273174 TAGCCGAAGCTATATTAAACT-GTACACTTAATGCCA
1 TAGCCGAAGCTAT-TCAAACTCGCACACTTAATGCCA
67273210 AGCATAGTCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 26 0.84
41 5 0.16
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (40 bp):
TAGCCGAAGCTATTCAAACTCGCACACTTAATGCCATTTG
Found at i:67275912 original size:11 final size:12
Alignment explanation
Indices: 67275890--67275922 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
67275880 GTAAAGAATT
67275890 GAAAAGAA-AAA
1 GAAAAGAAGAAA
67275901 GAAAA-AAGAAA
1 GAAAAGAAGAAA
67275912 GAAAAGAAGAA
1 GAAAAGAAGAA
67275923 CAATAGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 2 0.10
11 13 0.65
12 5 0.25
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (12 bp):
GAAAAGAAGAAA
Found at i:67278635 original size:40 final size:40
Alignment explanation
Indices: 67278561--67278684 Score: 119
Period size: 40 Copynumber: 3.1 Consensus size: 40
67278551 ACAAACGTCA
* *
67278561 CAAAAGATC-ACTATTAGCGGCACA-TATGTAAAAAACGCCG
1 CAAAAGATCAACCATTAGCGGCGCATTATG--AAAAACGCCG
* *
67278601 CAAAAGATCAAGCATTAGCGGCGC-TTCTTGAAAAACGCCG
1 CAAAAGATCAACCATTAGCGGCGCATT-ATGAAAAACGCCG
* * * * *
67278641 CTATAGGTCGACCATTAGCGGTGCATTATGAAAAACGCCG
1 CAAAAGATCAACCATTAGCGGCGCATTATGAAAAACGCCG
67278681 CAAA
1 CAAA
67278685 TAAAATAAGC
Statistics
Matches: 67, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
40 51 0.76
41 14 0.21
42 2 0.03
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (40 bp):
CAAAAGATCAACCATTAGCGGCGCATTATGAAAAACGCCG
Found at i:67278779 original size:38 final size:40
Alignment explanation
Indices: 67278727--67278830 Score: 149
Period size: 38 Copynumber: 2.6 Consensus size: 40
67278717 AGCTTTAATG
* * *
67278727 GCATTAGCGACGCTTTTGGAAAAACTCCGCTATAGA-T-A
1 GCATTAGCGGCGCTTTTAGAAAAACGCCGCTATAGATTAA
*
67278765 GCATTAGCGGCGCTTTTATAAAAACGCCGCTATAGATTAA
1 GCATTAGCGGCGCTTTTAGAAAAACGCCGCTATAGATTAA
*
67278805 GCATTAGCGGCGCTTTTTGAAAAACG
1 GCATTAGCGGCGCTTTTAGAAAAACG
67278831 TCGCAAAAAG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
38 32 0.55
39 1 0.02
40 25 0.43
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTAGAAAAACGCCGCTATAGATTAA
Found at i:67278912 original size:7 final size:7
Alignment explanation
Indices: 67278883--67279017 Score: 53
Period size: 7 Copynumber: 19.4 Consensus size: 7
67278873 ATTATTGTCA
*
67278883 TTAGAGT
1 TTAGGGT
67278890 TTATGGG-
1 TTA-GGGT
*
67278897 TTATGGT
1 TTAGGGT
67278904 TTAGGGT
1 TTAGGGT
**
67278911 TTATAGT
1 TTAGGGT
* **
67278918 TAATAGT
1 TTAGGGT
* *
67278925 TTAGAGC
1 TTAGGGT
*
67278932 TTAGAGT
1 TTAGGGT
67278939 TTAGGGT
1 TTAGGGT
*
67278946 TTATGGT
1 TTAGGGT
**
67278953 TTATAGT
1 TTAGGGT
**
67278960 TTATAGT
1 TTAGGGT
*
67278967 TT-GAGAT
1 TTAG-GGT
*
67278974 TTATGGT
1 TTAGGGT
67278981 TTAGGGT
1 TTAGGGT
67278988 TTAGGGT
1 TTAGGGT
*
67278995 TT-GAGAT
1 TTAG-GGT
67279002 TTAGGG-
1 TTAGGGT
67279008 TTAGGGT
1 TTAGGGT
67279015 TTA
1 TTA
67279018 AGGATAAATA
Statistics
Matches: 100, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
6 9 0.09
7 88 0.88
8 3 0.03
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.47
Consensus pattern (7 bp):
TTAGGGT
Found at i:67278914 original size:14 final size:14
Alignment explanation
Indices: 67278883--67279017 Score: 62
Period size: 14 Copynumber: 9.7 Consensus size: 14
67278873 ATTATTGTCA
* *
67278883 TTAGAGTTTATGGG
1 TTAGGGTTTATGGT
* *
67278897 TTATGGTTTAGGGT
1 TTAGGGTTTATGGT
** * *
67278911 TTATAGTTAATAGT
1 TTAGGGTTTATGGT
* *
67278925 TTAGAGCTTA-GAGT
1 TTAGGGTTTATG-GT
67278939 TTAGGGTTTATGGT
1 TTAGGGTTTATGGT
** *
67278953 TTATAGTTTATAGT
1 TTAGGGTTTATGGT
*
67278967 TT-GAGATTTATGGT
1 TTAG-GGTTTATGGT
*
67278981 TTAGGGTTTAGGGT
1 TTAGGGTTTATGGT
* *
67278995 TT-GAGATTTA-GGG
1 TTAG-GGTTTATGGT
67279008 TTAGGGTTTA
1 TTAGGGTTTA
67279018 AGGATAAATA
Statistics
Matches: 89, Mismatches: 26, Indels: 13
0.70 0.20 0.10
Matches are distributed among these distances:
13 10 0.11
14 77 0.87
15 2 0.02
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.47
Consensus pattern (14 bp):
TTAGGGTTTATGGT
Found at i:67278947 original size:42 final size:42
Alignment explanation
Indices: 67278890--67278996 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 42
67278880 TCATTAGAGT
* *
67278890 TTATGGGTTATGGTTTAGGGTTTATAGTTAATAGTTT-AGAGC
1 TTATGGTTTAGGGTTTAGGGTTTATAGTTAATAGTTTGAGA-C
* * *
67278932 TTA-GAGTTTAGGGTTTATGGTTTATAGTTTATAGTTTGAGAT
1 TTATG-GTTTAGGGTTTAGGGTTTATAGTTAATAGTTTGAGAC
67278974 TTATGGTTTAGGGTTTAGGGTTT
1 TTATGGTTTAGGGTTTAGGGTTT
67278997 GAGATTTAGG
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.02
42 51 0.91
43 4 0.07
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.49
Consensus pattern (42 bp):
TTATGGTTTAGGGTTTAGGGTTTATAGTTAATAGTTTGAGAC
Found at i:67278982 original size:35 final size:35
Alignment explanation
Indices: 67278902--67278990 Score: 108
Period size: 35 Copynumber: 2.5 Consensus size: 35
67278892 ATGGGTTATG
* *
67278902 GTTTAGGGTTTATAGTTAATAGTTTAGAGCTTAGA
1 GTTTAGGGTTTATGGTTTATAGTTTAGAGCTTAGA
* *
67278937 GTTTAGGGTTTATGGTTTATAGTTTATAG-TTTGA
1 GTTTAGGGTTTATGGTTTATAGTTTAGAGCTTAGA
* *
67278971 GATTTATGGTTTAGGGTTTA
1 G-TTTAGGGTTTATGGTTTA
67278991 GGGTTTGAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
34 5 0.11
35 42 0.89
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.48
Consensus pattern (35 bp):
GTTTAGGGTTTATGGTTTATAGTTTAGAGCTTAGA
Found at i:67278989 original size:28 final size:28
Alignment explanation
Indices: 67278923--67279017 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
67278913 ATAGTTAATA
* * *
67278923 GTTTAGAGCTTAGAGTTT-AGGGTTTATG
1 GTTTAGGGTTTAGAGTTTGA-GATTTATG
** *
67278951 GTTTATAGTTTATAGTTTGAGATTTATG
1 GTTTAGGGTTTAGAGTTTGAGATTTATG
*
67278979 GTTTAGGGTTTAGGGTTTGAGATTTA-G
1 GTTTAGGGTTTAGAGTTTGAGATTTATG
*
67279006 GGTTAGGGTTTA
1 GTTTAGGGTTTA
67279018 AGGATAAATA
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
27 12 0.21
28 44 0.77
29 1 0.02
ACGTcount: A:0.21, C:0.01, G:0.32, T:0.46
Consensus pattern (28 bp):
GTTTAGGGTTTAGAGTTTGAGATTTATG
Found at i:67279415 original size:22 final size:21
Alignment explanation
Indices: 67279373--67279422 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
67279363 GAGTTACTAT
67279373 TTTAAGGTTTATGGATCATGGG
1 TTTAAGGTTTATGGATCAT-GG
*
67279395 TTTAAGGTTTATGG-TGTATGG
1 TTTAAGGTTTATGGAT-CATGG
67279416 TTTAAGG
1 TTTAAGG
67279423 GTTGGAGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.22, C:0.02, G:0.32, T:0.44
Consensus pattern (21 bp):
TTTAAGGTTTATGGATCATGG
Found at i:67280225 original size:115 final size:114
Alignment explanation
Indices: 67279879--67280291 Score: 471
Period size: 114 Copynumber: 3.6 Consensus size: 114
67279869 ATGACATCGT
* * *
67279879 TTTTTTTGGATTTTTAGTGGCGTTTTAGGTTAAATCGCCGCAATAGGTTTGATTTAGTGGCGCTA
1 TTTTTTTGGATTTTTAGTGGCGTTTTAGGGTAAAACGCCGCAATAGGTTTGATTTAGCGGCGCTA
*
67279944 -GGTTATAAACGCCACTAATGGTTA-TCTTGTTTATATCAAAACGGTGTAG
66 GGGATA-AAACGCCACTAATGGTTATTC-TGTTTATATCAAAACGGTGTAG
* * *
67279993 TTTTTATGGATTTTTAGTGGCGTTTTTGGTTAAAACGCCGCAATAGGTTTGATTTAGCGGCGCTA
1 TTTTTTTGGATTTTTAGTGGCGTTTTAGGGTAAAACGCCGCAATAGGTTTGATTTAGCGGCGCTA
* *
67280058 GGG-TATAAACGCCACTAATGGTTATTATGTTTATATCAAAATGGTGTAG
66 GGGATA-AAACGCCACTAATGGTTATTCTGTTTATATCAAAACGGTGTAG
* * * * * **
67280107 TTTTATTGGATTTTTAGT-GCATTTTAGGGTAAAATGCCGTAATAGTTTTGCCCTTAGCGGCGCT
1 TTTTTTTGGATTTTTAGTGGCGTTTTAGGGTAAAACGCCGCAATAGGTTTG-ATTTAGCGGCGCT
* * * *
67280171 TGGAGATAAAACGCCACTAAAT-GTTATTCTGTTTATGTGAAAACGCCGTCGT-T
65 AGG-GATAAAACGCCACT-AATGGTTATTCTGTTTATATCAAAACG--GT-GTAG
* * * *
67280224 TTTTTTTGGA-TTTTAGTGGTGTTTTAGGGTTAAACGCCGCAATAGATTTGCCTTTAGCGGCGCT
1 TTTTTTTGGATTTTTAGTGGCGTTTTAGGGTAAAACGCCGCAATAGGTTTG-ATTTAGCGGCGCT
67280288 AGGG
65 AGGG
67280292 TTTATTTTGT
Statistics
Matches: 258, Mismatches: 31, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
113 26 0.10
114 132 0.51
115 33 0.13
116 13 0.05
117 52 0.20
118 2 0.01
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.39
Consensus pattern (114 bp):
TTTTTTTGGATTTTTAGTGGCGTTTTAGGGTAAAACGCCGCAATAGGTTTGATTTAGCGGCGCTA
GGGATAAAACGCCACTAATGGTTATTCTGTTTATATCAAAACGGTGTAG
Found at i:67280320 original size:99 final size:97
Alignment explanation
Indices: 67280194--67280385 Score: 242
Period size: 97 Copynumber: 2.0 Consensus size: 97
67280184 CCACTAAATG
* * * *
67280194 TTATTCTGTTTATGTGAAAACGCCGTCGTTTTTTTTTGGATTTTAGTGGTGTTTTAGGGTT-AAA
1 TTATTCTGTTTATATCAAAACGCCGTCG-TTTTGTTTGGATTTTAGTGGCG-TTTA-GGTTAAAA
67280258 CGCCGCAATAGATTTGCCTTTAGCGGCGCTAGGGT
63 CGCCGCAATAGATTTGCCTTTAGCGGCGCTAGGGT
* * * * *
67280293 TTATTTTGTTTATATCAAAACGGCGTCGTTTTGTTTGGTTTTTAGTGGCGTTTATGTTAAAATGC
1 TTATTCTGTTTATATCAAAACGCCGTCGTTTTGTTTGGATTTTAGTGGCGTTTAGGTTAAAACGC
* * *
67280358 CGTAATTGGTTTGCCTTTAGCGGCGCTA
66 CGCAATAGATTTGCCTTTAGCGGCGCTA
67280386 AGAGAAAACA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
96 3 0.04
97 34 0.43
98 19 0.24
99 24 0.30
ACGTcount: A:0.18, C:0.14, G:0.25, T:0.43
Consensus pattern (97 bp):
TTATTCTGTTTATATCAAAACGCCGTCGTTTTGTTTGGATTTTAGTGGCGTTTAGGTTAAAACGC
CGCAATAGATTTGCCTTTAGCGGCGCTAGGGT
Found at i:67283166 original size:18 final size:19
Alignment explanation
Indices: 67283133--67283168 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
67283123 GATATGATAC
*
67283133 TAAAATTATTTAAAAAAAT
1 TAAAATTATATAAAAAAAT
67283152 TAAAA-TATATAAAAAAA
1 TAAAATTATATAAAAAAA
67283169 AATCAGGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
TAAAATTATATAAAAAAAT
Found at i:67283459 original size:22 final size:21
Alignment explanation
Indices: 67283424--67283499 Score: 68
Period size: 22 Copynumber: 3.7 Consensus size: 21
67283414 AAAAGGTATC
* *
67283424 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
67283445 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
67283468 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
67283487 TGC-AATCATATCT
1 TACAAATCATATCT
67283500 AAGATTGTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 6 0.13
19 11 0.24
20 1 0.02
21 3 0.07
22 15 0.33
23 10 0.22
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:67283516 original size:35 final size:37
Alignment explanation
Indices: 67283453--67283550 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
67283443 ATTACAAAAT
67283453 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
67283489 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
67283524 CATATCATATCTAAGATTGCATATCAT
1 CATATCATATCTAAGATTG-ATATCAT
67283551 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:67283558 original size:17 final size:19
Alignment explanation
Indices: 67283460--67283550 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
67283450 AATCATATCT
67283460 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
67283479 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
67283497 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
67283514 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
67283533 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
67283551 TGAAGATTAT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:67284754 original size:10 final size:9
Alignment explanation
Indices: 67284741--67284787 Score: 51
Period size: 10 Copynumber: 5.0 Consensus size: 9
67284731 TTTATATTTA
67284741 ATTTATCAAT
1 ATTT-TCAAT
*
67284751 ATTTTAAAT
1 ATTTTCAAT
67284760 ATATTTCAAT
1 AT-TTTCAAT
67284770 A-TTTCAAT
1 ATTTTCAAT
67284778 ATTTATCAAT
1 ATTT-TCAAT
67284788 TAATATAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
8 8 0.25
9 8 0.25
10 16 0.50
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (9 bp):
ATTTTCAAT
Found at i:67285095 original size:25 final size:23
Alignment explanation
Indices: 67285067--67285140 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 23
67285057 CATATTTTGG
67285067 ATTAATCAGGACACAATTTTTTTAA
1 ATTAATCA-GACACAA-TTTTTTAA
**
67285092 ATT-AT--GACACAAATTTTGCAA
1 ATTAATCAGACAC-AATTTTTTAA
*
67285113 TTTAATCACGACACAATTTTTTAA
1 ATTAATCA-GACACAATTTTTTAA
67285137 ATTA
1 ATTA
67285141 CATATTTTGG
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
21 13 0.34
22 4 0.11
24 13 0.34
25 8 0.21
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.39
Consensus pattern (23 bp):
ATTAATCAGACACAATTTTTTAA
Found at i:67285248 original size:9 final size:9
Alignment explanation
Indices: 67285236--67285266 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
67285226 ATATCATATA
67285236 ATAACTTAC
1 ATAACTTAC
67285245 ATAACTTAC
1 ATAACTTAC
*
67285254 AAAACTTAC
1 ATAACTTAC
67285263 ATAA
1 ATAA
67285267 TACATAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (9 bp):
ATAACTTAC
Found at i:67285287 original size:13 final size:13
Alignment explanation
Indices: 67285269--67285354 Score: 70
Period size: 13 Copynumber: 6.3 Consensus size: 13
67285259 TTACATAATA
67285269 CATAAATATATAT
1 CATAAATATATAT
67285282 CATAAATATATAT
1 CATAAATATATAT
* *
67285295 CATATCATA-ACTTACA
1 CATA-AATATA--TA-T
67285311 CAACTAACATA-ATA-
1 C-A-TAA-ATATATAT
67285325 CATAAATATATAT
1 CATAAATATATAT
67285338 CATAAATATATAT
1 CATAAATATATAT
67285351 CATA
1 CATA
67285355 TACTAACTTA
Statistics
Matches: 61, Mismatches: 3, Indels: 18
0.74 0.04 0.22
Matches are distributed among these distances:
11 3 0.05
12 6 0.10
13 36 0.59
14 4 0.07
15 2 0.03
16 3 0.05
17 1 0.02
18 6 0.10
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (13 bp):
CATAAATATATAT
Found at i:67285305 original size:56 final size:56
Alignment explanation
Indices: 67285244--67285453 Score: 368
Period size: 56 Copynumber: 3.8 Consensus size: 56
67285234 TAATAACTTA
*
67285244 CATAACTTACAAAACTTACATAATACATAAATATATATCATAAATATATATCATAT
1 CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
*
67285300 CATAACTTACACAACTAACATAATACATAAATATATATCATAAATATATATCATAT
1 CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
* *
67285356 -ACTAACTTACACAACTTACATAATACATAAATATATATCGTAAATATATATCTTAT
1 CA-TAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
67285412 CATAACTTACACAACTTACATAATACATAAATATATATCATA
1 CATAACTTACACAACTTACATAATACATAAATATATATCATA
67285454 TCATAACTTA
Statistics
Matches: 146, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
55 1 0.01
56 144 0.99
57 1 0.01
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.33
Consensus pattern (56 bp):
CATAACTTACACAACTTACATAATACATAAATATATATCATAAATATATATCATAT
Found at i:67285385 original size:43 final size:44
Alignment explanation
Indices: 67285338--67285477 Score: 140
Period size: 56 Copynumber: 3.0 Consensus size: 44
67285328 AAATATATAT
67285338 CATAAATATATATCATATAC-TAACTTACACAACTTACATAATA
1 CATAAATATATATCATATACATAACTTACACAACTTACATAATA
67285381 CATAAATATATATCGTAAATATATATCTTATCATAACTTACACAACTTACATAATA
1 CATAAATATATATC--------ATA---TA-CATAACTTACACAACTTACATAATA
* *
67285437 CATAAATATATATCATAT-CATAACTTACATACCTTACATAA
1 CATAAATATATATCATATACATAACTTACACAACTTACATAA
67285478 ATGTATCTCA
Statistics
Matches: 82, Mismatches: 2, Indels: 26
0.75 0.02 0.24
Matches are distributed among these distances:
43 35 0.43
45 1 0.01
48 3 0.04
51 3 0.04
54 2 0.02
55 1 0.01
56 37 0.45
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (44 bp):
CATAAATATATATCATATACATAACTTACACAACTTACATAATA
Found at i:67285401 original size:13 final size:13
Alignment explanation
Indices: 67285383--67285407 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67285373 ACATAATACA
67285383 TAAATATATATCG
1 TAAATATATATCG
67285396 TAAATATATATC
1 TAAATATATATC
67285408 TTATCATAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (13 bp):
TAAATATATATCG
Found at i:67285467 original size:9 final size:9
Alignment explanation
Indices: 67285455--67285527 Score: 53
Period size: 9 Copynumber: 8.1 Consensus size: 9
67285445 TATATCATAT
67285455 CATAACTTA
1 CATAACTTA
*
67285464 CATACCTTA
1 CATAACTTA
*
67285473 CATAAATGTA
1 CATAACT-TA
* *
67285483 TC-TCA-TAA
1 -CATAACTTA
67285491 CATAACTTA
1 CATAACTTA
67285500 CATAACTTA
1 CATAACTTA
67285509 CA-AAGCTTA
1 CATAA-CTTA
*
67285518 CTTAACTTA
1 CATAACTTA
67285527 C
1 C
67285528 GTAATCCATA
Statistics
Matches: 50, Mismatches: 8, Indels: 12
0.71 0.11 0.17
Matches are distributed among these distances:
7 1 0.02
8 5 0.10
9 37 0.74
10 6 0.12
11 1 0.02
ACGTcount: A:0.41, C:0.23, G:0.03, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:67285489 original size:36 final size:36
Alignment explanation
Indices: 67285424--67285510 Score: 124
Period size: 36 Copynumber: 2.5 Consensus size: 36
67285414 TAACTTACAC
*
67285424 AACTTACATAA--TACATAAATATATATCATATCAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
* * *
67285458 AACTTACATACCTTACATAAATGTATCTCATAACAT
1 AACTTACATAACTTACATAAATATATATCATAACAT
67285494 AACTTACATAACTTACA
1 AACTTACATAACTTACA
67285511 AAGCTTACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
34 10 0.22
36 36 0.78
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (36 bp):
AACTTACATAACTTACATAAATATATATCATAACAT
Found at i:67290606 original size:13 final size:14
Alignment explanation
Indices: 67290590--67290618 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
67290580 TTATAAATAT
67290590 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
67290603 TTATAATGGTTTAA
1 TTATAATGGTTTAA
67290617 TT
1 TT
67290619 CATCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:67291053 original size:21 final size:21
Alignment explanation
Indices: 67291001--67291055 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
67290991 ACTTAGAGCG
* *
67291001 GAGGCAGTAGAGAGGGAGACA
1 GAGGCAGCAGCGAGGGAGACA
* *
67291022 GCGGCAGCAGCGAGGGAGGCA
1 GAGGCAGCAGCGAGGGAGACA
67291043 GAGGCAGCAGCGA
1 GAGGCAGCAGCGA
67291056 TTGCAGTAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.18, G:0.49, T:0.02
Consensus pattern (21 bp):
GAGGCAGCAGCGAGGGAGACA
Found at i:67291349 original size:31 final size:31
Alignment explanation
Indices: 67291307--67291372 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
67291297 TGTATTTTTT
* *
67291307 ATGCTACATTTGCTGTTTTTAGTTGGATTTC
1 ATGCTACATTTGCTGCTTTTAGTTGGATTTA
* *
67291338 ATGCTATATTTGCTGCTTTTGGTTGGATTTA
1 ATGCTACATTTGCTGCTTTTAGTTGGATTTA
67291369 ATGC
1 ATGC
67291373 AGGAAATGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.17, C:0.12, G:0.21, T:0.50
Consensus pattern (31 bp):
ATGCTACATTTGCTGCTTTTAGTTGGATTTA
Found at i:67304807 original size:23 final size:24
Alignment explanation
Indices: 67304781--67304908 Score: 60
Period size: 24 Copynumber: 5.6 Consensus size: 24
67304771 ACAAAAAAAG
67304781 AAAAT-ATAATAATAATAATAGTA
1 AAAATAATAATAATAATAATAGTA
*
67304804 AAAACTCAATAGTAATAATAAT-G-A
1 AAAA-T-AATAATAATAATAATAGTA
* *
67304828 AAAGGT-ATTATAAT-ATAATAGT-
1 AAA-ATAATAATAATAATAATAGTA
* * * *
67304850 --AATAATGATGATAATAGTGGTA
1 AAAATAATAATAATAATAATAGTA
** *
67304872 TTAGTAATAATAATAATAATAG--
1 AAAATAATAATAATAATAATAGTA
*
67304894 AAAATAATAACAATA
1 AAAATAATAATAATA
67304909 TTAAAAATAA
Statistics
Matches: 76, Mismatches: 18, Indels: 23
0.65 0.15 0.20
Matches are distributed among these distances:
19 1 0.01
20 7 0.09
21 11 0.14
22 18 0.24
23 4 0.05
24 21 0.28
25 1 0.01
26 13 0.17
ACGTcount: A:0.57, C:0.02, G:0.10, T:0.30
Consensus pattern (24 bp):
AAAATAATAATAATAATAATAGTA
Found at i:67304853 original size:33 final size:38
Alignment explanation
Indices: 67304811--67304892 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
67304801 GTAAAAACTC
67304811 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
67304844 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
67304883 AATAATAATA
1 AATAGTAATA
67304893 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:67304901 original size:19 final size:18
Alignment explanation
Indices: 67304877--67304918 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
67304867 TGGTATTAGT
*
67304877 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
67304896 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
67304914 AATAA
1 AATAA
67304919 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:67305183 original size:22 final size:23
Alignment explanation
Indices: 67305152--67305213 Score: 94
Period size: 22 Copynumber: 2.8 Consensus size: 23
67305142 TTTGTAGGCA
*
67305152 AGTGGAGTGGTTGGGA-TGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
67305174 AGTGGGGTGGTT-GGAGTGGTTT
1 AGTGGGGTGGTTGGGAGTGGTTT
67305196 AGTGGGGTGGTT-GGAGTG
1 AGTGGGGTGGTTGGGAGTG
67305214 AAGATATTTG
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
21 3 0.08
22 35 0.92
ACGTcount: A:0.11, C:0.00, G:0.55, T:0.34
Consensus pattern (23 bp):
AGTGGGGTGGTTGGGAGTGGTTT
Found at i:67306059 original size:206 final size:206
Alignment explanation
Indices: 67305705--67306788 Score: 1963
Period size: 206 Copynumber: 5.3 Consensus size: 206
67305695 CAAATCTGCT
* * *
67305705 TCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
* * *
67305770 ATCTAAAAGCCAGATTTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* *
67305835 TTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTCGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
67305900 AATCAGCTATA
196 AATCAGCTATG
* *
67305911 TCTTCGATTTGCTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
*
67305976 ATCTGAAGGCCAGATCTGCTATGTATCTGTTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
*
67306041 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTACTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
67306106 AATCAGCTATG
196 AATCAGCTATG
* *
67306117 TCTTTGATTTGCTCTTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
67306182 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* *
67306247 TTATCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCATGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
67306312 AATCAGCTATG
196 AATCAGCTATG
* *
67306323 TCTTTGATTTGCTCCTTGTAAGCACAAGGATGTCAAATCACCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
67306388 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
67306453 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
67306518 AATCAGCTATG
196 AATCAGCTATG
67306529 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
67306594 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
67306659 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
67306724 AATCAGCTATG
196 AATCAGCTATG
* **
67306735 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAACCGTCTTGGATC-TGCTT
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTT
67306789 TAGCCAGATC
Statistics
Matches: 850, Mismatches: 28, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
205 5 0.01
206 845 0.99
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (206 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCACCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
AATCAGCTATG
Found at i:67308332 original size:43 final size:45
Alignment explanation
Indices: 67308266--67308392 Score: 127
Period size: 45 Copynumber: 2.9 Consensus size: 45
67308256 TTTTCTCAAA
* * * *
67308266 TCACCGGTATT-TCGCCTGTTAGGCTCG-AGTCCTGATATA-AATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTGA-ATAGAATT
*
67308309 T-ACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGTATT
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGAATT
** * * *
67308353 TCACCGGCATTATAGTTTGCTAAGCTCAAAGGCCCGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATA
67308393 ATCAAGTCAA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 8 0.11
43 18 0.26
44 11 0.16
45 33 0.47
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCGAAGGCCTGAATAGAATT
Found at i:67308786 original size:41 final size:42
Alignment explanation
Indices: 67308729--67308823 Score: 147
Period size: 43 Copynumber: 2.3 Consensus size: 42
67308719 TACGCCTGCT
*
67308729 AGGCCTGAATACACATCACCGG-CGAAGCCTGCTAGGCACAA
1 AGGCCCGAATACACATCACCGGACGAAGCCTGCTAGGCACAA
* *
67308770 AGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCACCGG-ACGAAGCCTGCTAGGCACAA
67308813 AGGCCCGAATA
1 AGGCCCGAATA
67308824 TAATACCAGC
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
41 21 0.43
43 28 0.57
ACGTcount: A:0.32, C:0.33, G:0.24, T:0.12
Consensus pattern (42 bp):
AGGCCCGAATACACATCACCGGACGAAGCCTGCTAGGCACAA
Found at i:67308816 original size:43 final size:43
Alignment explanation
Indices: 67308729--67308844 Score: 150
Period size: 41 Copynumber: 2.8 Consensus size: 43
67308719 TACGCCTGCT
* *
67308729 AGGCCTGAATACACATCACCGG--CGAAGCCTGCTAGGCACAA
1 AGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACAA
*
67308770 AGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACAA
* * *
67308813 AGGCCCGAATATA-AT-ACCAGCACTAGGCCTGC
1 AGGCCCGAATACACATCACCGGCACTAAGCCTGC
67308845 GGGATTTATC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
41 36 0.54
42 2 0.03
43 29 0.43
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.13
Consensus pattern (43 bp):
AGGCCCGAATACACATCACCGGCACTAAGCCTGCTAGGCACAA
Found at i:67311851 original size:11 final size:10
Alignment explanation
Indices: 67311822--67311854 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
67311812 TTGATATGTT
67311822 AATGAAGAGA
1 AATGAAGAGA
67311832 AAT-AAGAGA
1 AATGAAGAGA
67311841 AAGTGAAGAGA
1 AA-TGAAGAGA
67311852 AAT
1 AAT
67311855 ACTGTAGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
9 8 0.38
10 5 0.24
11 8 0.38
ACGTcount: A:0.61, C:0.00, G:0.27, T:0.12
Consensus pattern (10 bp):
AATGAAGAGA
Found at i:67313610 original size:46 final size:46
Alignment explanation
Indices: 67313562--67313789 Score: 287
Period size: 46 Copynumber: 5.0 Consensus size: 46
67313552 GCTCTCTGAT
** * *
67313562 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
67313608 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
67313654 GGGAAATGAATAAGACCATGGTTGAAAGATACCGTGGGAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
67313700 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
67313746 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
67313790 TCAAAGATAA
Statistics
Matches: 156, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:67313721 original size:92 final size:92
Alignment explanation
Indices: 67313572--67313784 Score: 327
Period size: 92 Copynumber: 2.3 Consensus size: 92
67313562 ATGAAATGTG
* *
67313572 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAACGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
* *
67313637 TACCATGGCAACATGACGGGAAATGAA
66 TACCATGGCAACATGACAGAAAATGAA
* * *
67313664 TAAGACCATGGTTGAAAGATACCGTGGGAGCGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
*
67313729 TACCATGGCAACATGACAGAAAATGAG
66 TACCATGGCAACATGACAGAAAATGAA
* * *
67313756 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
67313785 TCATGTCAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 108 1.00
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.18
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAGAAAATGAA
Found at i:67337869 original size:11 final size:11
Alignment explanation
Indices: 67337839--67337871 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
67337829 TTGATATGTT
67337839 AATGAAGAGAA
1 AATGAAGAGAA
67337850 AAT-AAGAGAA
1 AATGAAGAGAA
*
67337860 AGTGAAGAGAA
1 AATGAAGAGAA
67337871 A
1 A
67337872 TACTGTAGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.64, C:0.00, G:0.27, T:0.09
Consensus pattern (11 bp):
AATGAAGAGAA
Found at i:67339611 original size:46 final size:46
Alignment explanation
Indices: 67339563--67339790 Score: 287
Period size: 46 Copynumber: 5.0 Consensus size: 46
67339553 GCTCTCTGAT
** * *
67339563 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
67339609 ATGAAACGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * * *
67339655 GGGAAATGAATAAGACCATGGTTGAAAGATACCGTGGGAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
*
67339701 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
67339747 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
67339791 TCAAAGATAA
Statistics
Matches: 156, Mismatches: 25, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
45 1 0.01
46 155 0.99
ACGTcount: A:0.41, C:0.14, G:0.25, T:0.19
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:67339722 original size:92 final size:92
Alignment explanation
Indices: 67339573--67339785 Score: 327
Period size: 92 Copynumber: 2.3 Consensus size: 92
67339563 ATGAAATGTG
* *
67339573 TAAGACCATGGTTGAAAGATACCATGGCAACGTGATATGAAACGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
* *
67339638 TACCATGGCAACATGACGGGAAATGAA
66 TACCATGGCAACATGACAGAAAATGAA
* * *
67339665 TAAGACCATGGTTGAAAGATACCGTGGGAGCGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
*
67339730 TACCATGGCAACATGACAGAAAATGAG
66 TACCATGGCAACATGACAGAAAATGAA
* * *
67339757 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
67339786 TCATGTCAAA
Statistics
Matches: 108, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 108 1.00
ACGTcount: A:0.41, C:0.15, G:0.25, T:0.18
Consensus pattern (92 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATGACAGAAAATGAA
Found at i:67353435 original size:33 final size:38
Alignment explanation
Indices: 67353393--67353474 Score: 102
Period size: 33 Copynumber: 2.3 Consensus size: 38
67353383 GTAAAAACAC
67353393 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
67353426 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
*
67353465 AATAATAATA
1 AATAGTAATA
67353475 GAAAATAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 1 0.02
37 7 0.17
38 4 0.10
39 11 0.27
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:67353483 original size:19 final size:18
Alignment explanation
Indices: 67353459--67353500 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
67353449 TGGTATTAGT
*
67353459 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
67353478 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
67353496 AATAA
1 AATAA
67353501 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:67354890 original size:5 final size:5
Alignment explanation
Indices: 67354880--67354906 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
67354870 TTATATAAAT
67354880 TTTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TT
67354907 ATTATATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:67356395 original size:205 final size:202
Alignment explanation
Indices: 67356043--67356457 Score: 785
Period size: 205 Copynumber: 2.0 Consensus size: 202
67356033 AAAAATTAGG
* *
67356043 ATAAACTATATATAATATCATTAAATTATTAGTAAGTTTATTTTTTTATCAATCAACTTTAAAAA
1 ATAAACTACATATAAGATCATTAAATTATTAGTAAGTTTATTTTTTTATCAATCAACTTTAAAAA
67356108 ATTATAAAATGATCATTAAAATTTTTTAAAAGTTTTCATTTAAGTTATTAAATTATAAAAATACT
66 ATTATAAAATGATCATTAAAATTTTTTAAAAGTTTTCATTTAAGTTATTAAATTATAAAAATACT
67356173 ACTATATAACATTCTCTTCTCTTTAACAGTTCAAAATTTTTTTTTATATAAAACAATTTTAAACA
131 ACTATATAACATTCTCTTCTCTTTAACAGTTC-AAA--TTTTTTTATATAAAACAATTTTAAACA
67356238 TTATAAATTT
193 TTATAAATTT
67356248 ATAAACTACATATAAGATCATTAAATTATTAGTAAGTTTATTTTTTTATCAATCAACTTTAAAAA
1 ATAAACTACATATAAGATCATTAAATTATTAGTAAGTTTATTTTTTTATCAATCAACTTTAAAAA
67356313 ATTATAAAATGATCATTAAAATTTTTTAAAAGTTTTCATTTAAGTTATTAAATTATAAAAATACT
66 ATTATAAAATGATCATTAAAATTTTTTAAAAGTTTTCATTTAAGTTATTAAATTATAAAAATACT
67356378 ACTATATAACATTCTCTTCTCTTTAACAGTTCAAATTTTTTTATATAAAACAATTTTAAACATTA
131 ACTATATAACATTCTCTTCTCTTTAACAGTTCAAATTTTTTTATATAAAACAATTTTAAACATTA
67356443 TAAATTT
196 TAAATTT
67356450 ATAAACTA
1 ATAAACTA
67356458 AAATTCAAAT
Statistics
Matches: 208, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
202 45 0.22
204 3 0.01
205 160 0.77
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.44
Consensus pattern (202 bp):
ATAAACTACATATAAGATCATTAAATTATTAGTAAGTTTATTTTTTTATCAATCAACTTTAAAAA
ATTATAAAATGATCATTAAAATTTTTTAAAAGTTTTCATTTAAGTTATTAAATTATAAAAATACT
ACTATATAACATTCTCTTCTCTTTAACAGTTCAAATTTTTTTATATAAAACAATTTTAAACATTA
TAAATTT
Found at i:67357237 original size:15 final size:15
Alignment explanation
Indices: 67357217--67357246 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
67357207 AAAATTGTCT
67357217 GGTTTTAAGACATCC
1 GGTTTTAAGACATCC
67357232 GGTTTTAAGACATCC
1 GGTTTTAAGACATCC
67357247 TCCACACTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (15 bp):
GGTTTTAAGACATCC
Found at i:67373027 original size:18 final size:18
Alignment explanation
Indices: 67372991--67373034 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
67372981 TAATTTATAA
67372991 ATAAATTTTATCTAATAT
1 ATAAATTTTATCTAATAT
* *
67373009 A-AAATTGTTATTTATTAT
1 ATAAATT-TTATCTAATAT
67373027 ATAAATTT
1 ATAAATTT
67373035 ATTTAATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 5 0.23
18 12 0.55
19 5 0.23
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
ATAAATTTTATCTAATAT
Found at i:67376582 original size:20 final size:20
Alignment explanation
Indices: 67376557--67376599 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
67376547 CTTGGGTGCC
67376557 CCTCCAGCCTTAGCTCGGTG
1 CCTCCAGCCTTAGCTCGGTG
67376577 CCTCCAGCCTTAGCTCGGTG
1 CCTCCAGCCTTAGCTCGGTG
67376597 CCT
1 CCT
67376600 AACCCATCTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.09, C:0.42, G:0.23, T:0.26
Consensus pattern (20 bp):
CCTCCAGCCTTAGCTCGGTG
Found at i:67377226 original size:3 final size:3
Alignment explanation
Indices: 67377213--67377244 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
67377203 CACAAAATCC
*
67377213 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
67377245 AACATCATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TCT
Found at i:67378656 original size:11 final size:11
Alignment explanation
Indices: 67378640--67378665 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
67378630 AATACATCAA
67378640 AAAATAAATTT
1 AAAATAAATTT
67378651 AAAATAAATTT
1 AAAATAAATTT
67378662 AAAA
1 AAAA
67378666 AATATGCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AAAATAAATTT
Found at i:67379192 original size:18 final size:17
Alignment explanation
Indices: 67379149--67379194 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
67379139 CCGTTATGTC
67379149 CGCGACCGCGA-C-AAA
1 CGCGACCGCGACCGAAA
*
67379164 CGC-AACGCGACCGAAAA
1 CGCGACCGCGACCG-AAA
67379181 CGCGACCGCGACCG
1 CGCGACCGCGACCG
67379195 CAATTTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 6 0.24
15 4 0.16
17 6 0.24
18 9 0.36
ACGTcount: A:0.30, C:0.41, G:0.28, T:0.00
Consensus pattern (17 bp):
CGCGACCGCGACCGAAA
Found at i:67383325 original size:49 final size:51
Alignment explanation
Indices: 67383270--67383367 Score: 137
Period size: 49 Copynumber: 2.0 Consensus size: 51
67383260 CTTGGATATA
* * *
67383270 GTTGGAGTTAACATTAATCTTT-T-TGTATGAAAAAACAGAGGGCCAAAGT
1 GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGCCCAAAGT
* *
67383319 GTTGGAGTCAACATTAATCTTTCTATGCGTGAAAAAACAGTGGCCCAAA
1 GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGCCCAAA
67383368 TATAACTATA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
49 21 0.50
50 1 0.02
51 20 0.48
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (51 bp):
GTTGGAGTCAACATTAATCTTTCTATGCATGAAAAAACAGAGGCCCAAAGT
Found at i:67391241 original size:62 final size:62
Alignment explanation
Indices: 67391144--67391267 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
67391134 AGATATCTAT
*
67391144 TGAATAATTATGTTTATTGCTAAAAATATGACTATTCATTTGGTCGTTATGTCCCTATGAAA
1 TGAATAATTATGTTTATCGCTAAAAATATGACTATTCATTTGGTCGTTATGTCCCTATGAAA
67391206 TGAATAATTATGTTTATCGCTAAAAATATGACTATTCATTTGGTCGTTATGTCCCTATGAAA
1 TGAATAATTATGTTTATCGCTAAAAATATGACTATTCATTTGGTCGTTATGTCCCTATGAAA
67391268 AGACATGAGA
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (62 bp):
TGAATAATTATGTTTATCGCTAAAAATATGACTATTCATTTGGTCGTTATGTCCCTATGAAA
Found at i:67393090 original size:17 final size:19
Alignment explanation
Indices: 67393054--67393090 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
67393044 GACTTGCAAG
*
67393054 GAAATTAAAATTATAAGAT
1 GAAATTAAAATTAAAAGAT
67393073 GAAA-TAAAA-TAAAAGAT
1 GAAATTAAAATTAAAAGAT
67393090 G
1 G
67393091 CAGGACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.14, T:0.24
Consensus pattern (19 bp):
GAAATTAAAATTAAAAGAT
Found at i:67402474 original size:16 final size:17
Alignment explanation
Indices: 67402443--67402475 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
67402433 TTCATAAGTA
67402443 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
67402460 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
67402476 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:67402911 original size:25 final size:25
Alignment explanation
Indices: 67402883--67402958 Score: 72
Period size: 25 Copynumber: 3.2 Consensus size: 25
67402873 GTCTTACACA
67402883 TTTCATATCATGTTGCCATGGTATC
1 TTTCATATCATGTTGCCATGGTATC
* * * *
67402908 TTTCA-ACCATG--GTC-TTGCA-C
1 TTTCATATCATGTTGCCATGGTATC
67402928 GTTTCATATCATGTTGCCATGGTATC
1 -TTTCATATCATGTTGCCATGGTATC
67402954 TTTCA
1 TTTCA
67402959 ATCTTTCAAC
Statistics
Matches: 37, Mismatches: 8, Indels: 12
0.65 0.14 0.21
Matches are distributed among these distances:
20 1 0.03
21 8 0.22
22 7 0.19
24 7 0.19
25 13 0.35
26 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (25 bp):
TTTCATATCATGTTGCCATGGTATC
Found at i:67402987 original size:54 final size:54
Alignment explanation
Indices: 67402905--67403013 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 54
67402895 TTGCCATGGT
* * *
67402905 ATCTTTCAACCATGGTCTTGCACGTTTCATATCATGTTGCCATGGTATCTTTCA
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCA
67402959 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCA
1 ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCA
67403013 A
1 A
67403014 CCATGGTCTT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (54 bp):
ATCTTTCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCA
Found at i:67403032 original size:46 final size:46
Alignment explanation
Indices: 67402753--67403034 Score: 332
Period size: 46 Copynumber: 6.0 Consensus size: 46
67402743 TATTTATCGA
* * * * * *
67402753 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** ***
67402799 CATGTTGCCATGGTATCTTTCAACTATGGTCTTATTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
67402845 CATGTTGCTATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
* *
67402891 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGCACGTTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
67402937 CATGTTGCCATGGTATCTTTCAATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGG------T--ATCTTTCAACCATGGTCTTACACATTTCATAT
*
67402991 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
67403035 TTCAAAGAGC
Statistics
Matches: 209, Mismatches: 18, Indels: 18
0.85 0.07 0.07
Matches are distributed among these distances:
45 4 0.02
46 161 0.77
48 1 0.00
52 1 0.00
54 42 0.20
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:67411819 original size:18 final size:19
Alignment explanation
Indices: 67411786--67411822 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
67411776 GATATATATA
67411786 AGTAAAAACTTTACAAATT
1 AGTAAAAACTTTACAAATT
*
67411805 AGTAAATAC-TTACAAATT
1 AGTAAAAACTTTACAAATT
67411823 TTTAAAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.32
Consensus pattern (19 bp):
AGTAAAAACTTTACAAATT
Found at i:67417113 original size:39 final size:39
Alignment explanation
Indices: 67417059--67417136 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
67417049 TGTATAATTT
67417059 CCAAATACTTTGGGGTATTATAGATGGAGATTTGCAAAA
1 CCAAATACTTTGGGGTATTATAGATGGAGATTTGCAAAA
67417098 CCAAATACTTTGGGGTATTATAGATGGAGATTTGCAAAA
1 CCAAATACTTTGGGGTATTATAGATGGAGATTTGCAAAA
67417137 GTTTTATTCT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (39 bp):
CCAAATACTTTGGGGTATTATAGATGGAGATTTGCAAAA
Found at i:67419196 original size:40 final size:40
Alignment explanation
Indices: 67419141--67419221 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
67419131 AACTCTCTCA
*
67419141 AAAATAGAATTTATTTGTGGAATAAATCACACTGAAATCG
1 AAAATAGAATTTATTTGTGAAATAAATCACACTGAAATCG
67419181 AAAATAGAATTTATTTGTGAAATAAATCACACTGAAATCG
1 AAAATAGAATTTATTTGTGAAATAAATCACACTGAAATCG
67419221 A
1 A
67419222 CGCTTTGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.30
Consensus pattern (40 bp):
AAAATAGAATTTATTTGTGAAATAAATCACACTGAAATCG
Found at i:67424803 original size:24 final size:25
Alignment explanation
Indices: 67424755--67424818 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 25
67424745 ATTATTTTGG
* *
67424755 AATGTTTCTTTATATTATATTATTT-
1 AATGTTT-TATATATTATATCATTTA
* *
67424780 TATGTTTTATATATTATCTCATTTA
1 AATGTTTTATATATTATATCATTTA
67424805 AATGTTTTTATATA
1 AATG-TTTTATATA
67424819 ATAGTACGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 14 0.44
25 9 0.28
26 9 0.28
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.61
Consensus pattern (25 bp):
AATGTTTTATATATTATATCATTTA
Found at i:67428406 original size:26 final size:26
Alignment explanation
Indices: 67428375--67428483 Score: 182
Period size: 26 Copynumber: 4.2 Consensus size: 26
67428365 TGAAATTCCC
*
67428375 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
67428401 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
67428427 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
67428453 GTCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
67428479 ATCAT
1 ATCAT
67428484 TTTGTATCAA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.35, C:0.24, G:0.08, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:67436019 original size:29 final size:27
Alignment explanation
Indices: 67435955--67436011 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 27
67435945 TAACAATTTT
*
67435955 TTTAAAAAAAT-TTTAAAAATTCAAAAA
1 TTTAAAAAAATATTTAAAAAAT-AAAAA
67435982 TTTGAAAAAAAATATTTAAAAAATAAAAA
1 TTT--AAAAAAATATTTAAAAAATAAAAA
67436011 T
1 T
67436012 CATTAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.12
29 14 0.54
30 9 0.35
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (27 bp):
TTTAAAAAAATATTTAAAAAATAAAAA
Found at i:67454508 original size:12 final size:12
Alignment explanation
Indices: 67454488--67454523 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
67454478 TCGGATATGC
*
67454488 AATGTATGAATG
1 AATGCATGAATG
67454500 AATGCATGAATG
1 AATGCATGAATG
67454512 AATGCATGAATG
1 AATGCATGAATG
67454524 TCAAATGAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:67457077 original size:23 final size:26
Alignment explanation
Indices: 67457025--67457086 Score: 96
Period size: 23 Copynumber: 2.5 Consensus size: 26
67457015 TTTTTTTGGG
67457025 GGGTTAGG-TTTTTCTTTTTCTTTTT
1 GGGTTAGGTTTTTTCTTTTTCTTTTT
67457050 GGGTTAGGTTTTTTC-TTTT-TTTTT
1 GGGTTAGGTTTTTTCTTTTTCTTTTT
67457074 -GGTTAGGTTTTTT
1 GGGTTAGGTTTTTT
67457087 TGGGAGGGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
23 13 0.36
24 5 0.14
25 12 0.33
26 6 0.17
ACGTcount: A:0.05, C:0.05, G:0.23, T:0.68
Consensus pattern (26 bp):
GGGTTAGGTTTTTTCTTTTTCTTTTT
Found at i:67457087 original size:25 final size:24
Alignment explanation
Indices: 67457025--67457087 Score: 94
Period size: 25 Copynumber: 2.6 Consensus size: 24
67457015 TTTTTTTGGG
67457025 GGGTTAGGTTTTTCTTTTTCTTTTT
1 GGGTTAGGTTTTT-TTTTTCTTTTT
67457050 GGGTTAGGTTTTTTCTTTT-TTTTT
1 GGGTTAGGTTTTTT-TTTTCTTTTT
67457074 -GGTTAGGTTTTTTT
1 GGGTTAGGTTTTTTT
67457088 GGGAGGGCTT
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
22 1 0.03
23 13 0.35
24 6 0.16
25 17 0.46
ACGTcount: A:0.05, C:0.05, G:0.22, T:0.68
Consensus pattern (24 bp):
GGGTTAGGTTTTTTTTTTCTTTTT
Found at i:67461485 original size:20 final size:20
Alignment explanation
Indices: 67461460--67461499 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
67461450 AAGTGTGACT
67461460 GAGTTGGTGTCGAGAGTCAA
1 GAGTTGGTGTCGAGAGTCAA
67461480 GAGTTGGTGTCGAGAGTCAA
1 GAGTTGGTGTCGAGAGTCAA
67461500 CTTGACAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.40, T:0.25
Consensus pattern (20 bp):
GAGTTGGTGTCGAGAGTCAA
Found at i:67489369 original size:26 final size:27
Alignment explanation
Indices: 67489340--67489397 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
67489330 TTCTAATAAT
*
67489340 ATAATAAG-AG-AAATAATATATTTGTA
1 ATAATAAGTAGAAAATAATA-ATATGTA
*
67489366 ATAAT-AGTAGAAAATACTAATATGTA
1 ATAATAAGTAGAAAATAATAATATGTA
67489392 ATAATA
1 ATAATA
67489398 GTAATAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 2 0.07
26 18 0.67
27 7 0.26
ACGTcount: A:0.55, C:0.02, G:0.10, T:0.33
Consensus pattern (27 bp):
ATAATAAGTAGAAAATAATAATATGTA
Found at i:67490732 original size:31 final size:31
Alignment explanation
Indices: 67490697--67490759 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
67490687 GTCTGTTGGG
* *
67490697 TTTGGGTATTGGGTTTTCATGGATTTAGGGA
1 TTTGGGTATTGGGTTGTAATGGATTTAGGGA
* *
67490728 TTTGGGTTTTGGGTTGTAATGGGTTTAGGGA
1 TTTGGGTATTGGGTTGTAATGGATTTAGGGA
67490759 T
1 T
67490760 AAATTGGGCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.14, C:0.02, G:0.38, T:0.46
Consensus pattern (31 bp):
TTTGGGTATTGGGTTGTAATGGATTTAGGGA
Found at i:67492732 original size:25 final size:25
Alignment explanation
Indices: 67492681--67492733 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
67492671 TCTCTAGGTT
* *
67492681 AAACAGAGTTTAAGTGGGAAACTAG
1 AAACAGAGTTTAAGTAGGAAACAAG
* * *
67492706 AAACAGAGTTTAATTAGGAGAGAAG
1 AAACAGAGTTTAAGTAGGAAACAAG
67492731 AAA
1 AAA
67492734 ATCAAAAAAC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.49, C:0.06, G:0.26, T:0.19
Consensus pattern (25 bp):
AAACAGAGTTTAAGTAGGAAACAAG
Found at i:67498999 original size:14 final size:16
Alignment explanation
Indices: 67498968--67498999 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
67498958 ATAATTGTAC
67498968 TTAATTGTTGGATTTA
1 TTAATTGTTGGATTTA
67498984 TTAATTG-TGG-TTTA
1 TTAATTGTTGGATTTA
67498998 TT
1 TT
67499000 GTACTTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 3 0.19
16 7 0.44
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (16 bp):
TTAATTGTTGGATTTA
Done.