Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 220 of 259
Found at i:69751825 original size:22 final size:23
Alignment explanation
Indices: 69751799--69751849 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
69751789 TTATAAATTA
* *
69751799 TTATTAAGCAT-TA-TATTTATG
1 TTATTAAACATGTAGTATGTATG
69751820 TGTATTAAACATGTAGTATGTATG
1 T-TATTAAACATGTAGTATGTATG
69751844 TTATTA
1 TTATTA
69751850 TAAAGTTCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
21 1 0.04
22 9 0.36
23 7 0.28
24 8 0.32
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (23 bp):
TTATTAAACATGTAGTATGTATG
Found at i:69758809 original size:34 final size:37
Alignment explanation
Indices: 69758765--69758851 Score: 117
Period size: 34 Copynumber: 2.4 Consensus size: 37
69758755 CAAAATAACA
*
69758765 AACCCCAAACCATAAACTT-A-ACATACTACCA-TTG
1 AACCCTAAACCATAAACTTAATACATACTACCATTTG
*
69758799 AACCCTAAACCATAAACTTAAAATATATACTACCATTTG
1 AACCCTAAACCATAAACTT--AATACATACTACCATTTG
69758838 AACCCTAAACCATA
1 AACCCTAAACCATA
69758852 GGCCTTAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
34 18 0.39
37 1 0.02
38 10 0.22
39 17 0.37
ACGTcount: A:0.46, C:0.29, G:0.02, T:0.23
Consensus pattern (37 bp):
AACCCTAAACCATAAACTTAATACATACTACCATTTG
Found at i:69759405 original size:41 final size:41
Alignment explanation
Indices: 69759329--69759525 Score: 186
Period size: 41 Copynumber: 4.8 Consensus size: 41
69759319 ATTTTCGGCG
* *
69759329 TTTGGACAAAAAACGCCGCTATTGATCAG-TATTAGTGGCA
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
** * *
69759369 TTTGGACCAAAAACGCCGCTATTTCTTAGTTTTTAGTGGCGT
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGC-A
* * * * *
69759411 TTTAGA-TAAAAACGCAGCTATTGATCAATTTTTAGTGGCG
1 TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
* * *
69759451 TTT-TAGCTAAAAACGCCGCTATTGAACAGTTTTTAGTGGCA
1 TTTGGA-CCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
* * *
69759492 TTTAGG-CCAAAAACGCTGTTATTGTTCAGTTTTT
1 TTT-GGACCAAAAACGCCGCTATTGATCAGTTTTT
69759526 TGCGGCGTTA
Statistics
Matches: 126, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
39 1 0.01
40 28 0.22
41 92 0.73
42 5 0.04
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.36
Consensus pattern (41 bp):
TTTGGACCAAAAACGCCGCTATTGATCAGTTTTTAGTGGCA
Found at i:69760079 original size:31 final size:31
Alignment explanation
Indices: 69760044--69760126 Score: 80
Period size: 31 Copynumber: 2.6 Consensus size: 31
69760034 GTTTATTATG
*
69760044 AAAAATAATCTCAAAATAACAATATT-TAAAT
1 AAAAA-AATCTCAAAATAACAACATTATAAAT
* **
69760075 AAAAAAAAT-TGAGATTTAACAACATTATAAAT
1 -AAAAAAATCTCA-AAATAACAACATTATAAAT
*
69760107 AAAAAAAACTCAAAATAACA
1 AAAAAAATCTCAAAATAACA
69760127 TATCAAAATA
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
30 2 0.05
31 26 0.65
32 12 0.30
ACGTcount: A:0.64, C:0.10, G:0.02, T:0.24
Consensus pattern (31 bp):
AAAAAAATCTCAAAATAACAACATTATAAAT
Found at i:69768509 original size:5 final size:6
Alignment explanation
Indices: 69768492--69768517 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
69768482 CTCTTGTACA
69768492 TCTTTT TCTTTT TCTTTT TCTTTT TC
1 TCTTTT TCTTTT TCTTTT TCTTTT TC
69768518 ATTTCCCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:69770270 original size:6 final size:6
Alignment explanation
Indices: 69770259--69770285 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
69770249 GCGGATACGG
69770259 CCCTTA CCCTTA CCCTTA CCCTTA CCC
1 CCCTTA CCCTTA CCCTTA CCCTTA CCC
69770286 GCCACCGGGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.56, G:0.00, T:0.30
Consensus pattern (6 bp):
CCCTTA
Found at i:69774824 original size:21 final size:21
Alignment explanation
Indices: 69774798--69774872 Score: 80
Period size: 21 Copynumber: 3.4 Consensus size: 21
69774788 TCAGATATTA
69774798 TTATTATCATTACTATTTTCG
1 TTATTATCATTACTATTTTCG
* *
69774819 TTATTATTCTTATTACTATTTACA
1 TTATTA-TC--ATTACTATTTTCG
*
69774843 TTATTATTATTACTA-TTTCTG
1 TTATTATCATTACTATTTTC-G
69774864 TTATTATCA
1 TTATTATCA
69774873 CTTTTACTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
20 3 0.07
21 21 0.48
22 2 0.05
23 1 0.02
24 17 0.39
ACGTcount: A:0.27, C:0.12, G:0.03, T:0.59
Consensus pattern (21 bp):
TTATTATCATTACTATTTTCG
Found at i:69774833 original size:24 final size:24
Alignment explanation
Indices: 69774795--69774870 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 24
69774785 CTATCAGATA
*
69774795 TTATTATTATCATTACTATTTTCG
1 TTATTATTATTATTACTATTTTCG
* *
69774819 TTATTATTCTTATTACTATTTAC-
1 TTATTATTATTATTACTATTTTCG
69774842 --ATTATTATTATTACTA-TTTCTG
1 TTATTATTATTATTACTATTTTC-G
69774864 TTATTAT
1 TTATTAT
69774871 CACTTTTACT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
20 3 0.07
21 15 0.35
24 25 0.58
ACGTcount: A:0.26, C:0.11, G:0.03, T:0.61
Consensus pattern (24 bp):
TTATTATTATTATTACTATTTTCG
Found at i:69774896 original size:26 final size:26
Alignment explanation
Indices: 69774865--69774915 Score: 68
Period size: 25 Copynumber: 1.9 Consensus size: 26
69774855 CTATTTCTGT
69774865 TATTATCACTTTTACTA-ATTTTTTCC
1 TATTATCA-TTTTACTACATTTTTTCC
*
69774891 TATTATTATTTTACTATCATTTTTT
1 TATTATCATTTTACTA-CATTTTTT
69774916 TAATACTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 7 0.32
27 7 0.32
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.63
Consensus pattern (26 bp):
TATTATCATTTTACTACATTTTTTCC
Found at i:69776100 original size:2 final size:2
Alignment explanation
Indices: 69776093--69776170 Score: 149
Period size: 2 Copynumber: 39.5 Consensus size: 2
69776083 ATTTATCCAA
69776093 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
69776135 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A- AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
69776171 TTAAAAAAAG
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
1 1 0.01
2 74 0.99
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:69776291 original size:28 final size:28
Alignment explanation
Indices: 69776231--69776292 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
69776221 CACCATCTTG
** *
69776231 GTACCTAAACTTTTTTTTATCACAATTT
1 GTACCTAAACTACTTTTTATCACAAGTT
*
69776259 GTACCTAAACTACTTTTT-TCCCAAGTT
1 GTACCTAAACTACTTTTTATCACAAGTT
69776286 GATACCT
1 G-TACCT
69776293 CCGTTAGTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 8 0.28
28 21 0.72
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (28 bp):
GTACCTAAACTACTTTTTATCACAAGTT
Found at i:69776575 original size:17 final size:17
Alignment explanation
Indices: 69776553--69776587 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
69776543 TCTCTCTCTC
* *
69776553 TTTTTTCTTTTTTCCTT
1 TTTTTTCCTTCTTCCTT
69776570 TTTTTTCCTTCTTCCTT
1 TTTTTTCCTTCTTCCTT
69776587 T
1 T
69776588 ATAATGTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (17 bp):
TTTTTTCCTTCTTCCTT
Found at i:69784894 original size:14 final size:15
Alignment explanation
Indices: 69784871--69784903 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
69784861 TGATGTGAAT
69784871 AATATAAAATATTA-
1 AATATAAAATATTAG
*
69784885 AATATCAAATATTAG
1 AATATAAAATATTAG
69784900 AATA
1 AATA
69784904 ATATAATAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (15 bp):
AATATAAAATATTAG
Found at i:69785253 original size:21 final size:23
Alignment explanation
Indices: 69785211--69785253 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
69785201 AGTATTTCGG
*
69785211 AGTATGTACATGAGACAATATAA
1 AGTATATACATGAGACAATATAA
69785234 AGTATATACATG-GA-AATATA
1 AGTATATACATGAGACAATATA
69785254 CAAGAAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 11 0.58
ACGTcount: A:0.49, C:0.07, G:0.16, T:0.28
Consensus pattern (23 bp):
AGTATATACATGAGACAATATAA
Found at i:69785264 original size:23 final size:23
Alignment explanation
Indices: 69785217--69785266 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
69785207 TCGGAGTATG
*
69785217 TACATGAGACAATATAAAGTATA
1 TACATGAGACAATATAAAGAATA
69785240 TACATG-GA-AATATACAAGAAGTA
1 TACATGAGACAATATA-AAGAA-TA
69785263 TACA
1 TACA
69785267 ACTAATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 6 0.25
23 12 0.50
ACGTcount: A:0.52, C:0.10, G:0.14, T:0.24
Consensus pattern (23 bp):
TACATGAGACAATATAAAGAATA
Found at i:69785298 original size:11 final size:11
Alignment explanation
Indices: 69785282--69785311 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
69785272 TAACATTAAG
69785282 AATATATATAT
1 AATATATATAT
*
69785293 AATATAAATAT
1 AATATATATAT
69785304 AATATATA
1 AATATATA
69785312 CAATATATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:69785747 original size:12 final size:12
Alignment explanation
Indices: 69785706--69785751 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
69785696 AAAGGTAATT
*
69785706 TTTTTTATT-TG
1 TTTTTTATTATA
*
69785717 TTTTGTA-TATA
1 TTTTTTATTATA
69785728 TATTTTTATTATA
1 T-TTTTTATTATA
69785741 TTTTTTATTAT
1 TTTTTTATTAT
69785752 GATGTATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
10 1 0.03
11 8 0.28
12 15 0.52
13 5 0.17
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.74
Consensus pattern (12 bp):
TTTTTTATTATA
Found at i:69785804 original size:13 final size:13
Alignment explanation
Indices: 69785788--69785812 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69785778 CGAAAAAGGA
69785788 AAAAATAAAAAAT
1 AAAAATAAAAAAT
69785801 AAAAATAAAAAA
1 AAAAATAAAAAA
69785813 AGAGTAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:69786081 original size:23 final size:23
Alignment explanation
Indices: 69786046--69786122 Score: 111
Period size: 24 Copynumber: 3.3 Consensus size: 23
69786036 AGTTTCTTGG
69786046 TTTTTTTTGGGGGGTTAAGTTTT
1 TTTTTTTTGGGGGGTTAAGTTTT
*
69786069 CTTTTTTTTGGGGGGTTAGGTTTTT
1 -TTTTTTTTGGGGGGTTAAG-TTTT
*
69786094 TTTTTTTTGGGGGGTT-AGATTT
1 TTTTTTTTGGGGGGTTAAGTTTT
69786116 TTTTTTT
1 TTTTTTT
69786123 GGAGGGCTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
22 10 0.20
23 1 0.02
24 34 0.69
25 4 0.08
ACGTcount: A:0.06, C:0.01, G:0.29, T:0.64
Consensus pattern (23 bp):
TTTTTTTTGGGGGGTTAAGTTTT
Found at i:69787058 original size:72 final size:72
Alignment explanation
Indices: 69786970--69787398 Score: 571
Period size: 72 Copynumber: 5.9 Consensus size: 72
69786960 GTGATTTGAA
69786970 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
*
69787035 TCCCGAG
66 TCCTGAG
* *
69787042 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG-AAAAC-AGAAATTGAAATTACCTCAG
* *
69787107 CATGTCTTGAG
62 CGTGTCCTGAG
** *
69787118 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
69787183 TCCTGAG
66 TCCTGAG
* * * *
69787190 GCTCAACTCA-TTTTTGCAATATGAGTTGATTTTTTAACAAC--AAATTGAAATTACCTCAGCGT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAA-AACAGAAATTGAAATTACCTCAGCGT
69787252 GTCCTGAG
65 GTCCTGAG
* * * * *
69787260 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAGACAAAAATT-AAAATACCTCAACG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCTCAGCG
*
69787324 TGTCTTGAG
64 TGTCCTGAG
** *
69787333 GCTCAACTCATTTCTCGCAATATGAGTTGAATTTT-AAAACAGAAATTGAAATTACCTCAGCGTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
69787397 TC
66 TC
69787399 TGCATATGAG
Statistics
Matches: 313, Mismatches: 33, Indels: 23
0.85 0.09 0.06
Matches are distributed among these distances:
70 49 0.16
71 58 0.19
72 72 0.23
73 59 0.19
74 16 0.05
75 5 0.02
76 54 0.17
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (72 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTG
TCCTGAG
Found at i:69787153 original size:148 final size:144
Alignment explanation
Indices: 69786965--69787399 Score: 592
Period size: 148 Copynumber: 3.0 Consensus size: 144
69786955 CATGTGTGAT
*
69786965 TTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
1 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* *
69787030 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAACAAAAAATTG
66 GCGTGTCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGA-TTTTTT--AAAACAAAAAATTG
* *
69787095 AAAATACCTCAGCATGTC
127 AAATTACCTCAGCGTGTC
** *
69787113 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
1 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
* * *
69787178 GCGTGTCCTGAGGCTCAACTCATTTTTGCAATATGAGTTGATTTTTT--AACAACAAATTGAAAT
66 GCGTGTCCTGAGGCTCAACTCATTCTCGCAATATGAGTTGATTTTTTAAAACAAAAAATTGAAAT
69787241 TACCTCAGCGTGTC
131 TACCTCAGCGTGTC
* * * * *
69787255 CTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTTTGAAGACAAAAATT-AAAATACCT
1 TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAACAGAAATTGAAATTACCT
* * * *
69787319 CAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATTTTAAAAC-AGAAATTGA
64 CAGCGTGTCCTGAGGCTCAACTCA-TTCTCGCAATATGAGTTGATTTTTTAAAACAAAAAATTGA
69787382 AATTACCTCAGCGTGTC
128 AATTACCTCAGCGTGTC
69787399 T
1 T
69787400 GCATATGAGT
Statistics
Matches: 256, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
142 58 0.23
143 34 0.13
144 57 0.22
145 3 0.01
146 6 0.02
147 16 0.06
148 82 0.32
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.31
Consensus pattern (144 bp):
TTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAACAGAAATTGAAATTACCTCA
GCGTGTCCTGAGGCTCAACTCATTCTCGCAATATGAGTTGATTTTTTAAAACAAAAAATTGAAAT
TACCTCAGCGTGTC
Found at i:69787453 original size:119 final size:119
Alignment explanation
Indices: 69787293--69787510 Score: 312
Period size: 119 Copynumber: 1.8 Consensus size: 119
69787283 GAGTTGATTT
* ** **
69787293 TTTTGAAGACAAAAATTAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTTTGAAGACAAAAATTAAAATACCTCAACGTCTCCCGAGGCTCAACTCACCTCTCGCAATATGA
69787358 GTTGAATTTTAAAACAGAAATTGAAATTACCTCAGCGTGTCTGCATATGAGTTGA
66 GTTGAATTTTAAAACAGAAATTG-AATTACCTCAGCGTGTCTGCATATGAGTTGA
* * * * *
69787413 TTTTGAA-ACAGAAATTGAATTACCTCAGCGTCTCCCGAGGCTTAACTCACCTCTCGCAATATGA
1 TTTTGAAGACAAAAATTAAAATACCTCAACGTCTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
69787477 GTTGATTTTTGAAACAGAAATTGAATTACCTCAG
66 GTTGAATTTTAAAACAGAAATTGAATTACCTCAG
69787511 GTCTCCGAGG
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
118 11 0.13
119 68 0.79
120 7 0.08
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (119 bp):
TTTTGAAGACAAAAATTAAAATACCTCAACGTCTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGAATTTTAAAACAGAAATTGAATTACCTCAGCGTGTCTGCATATGAGTTGA
Found at i:69787497 original size:70 final size:71
Alignment explanation
Indices: 69787402--69787638 Score: 353
Period size: 70 Copynumber: 3.4 Consensus size: 71
69787392 GCGTGTCTGC
*
69787402 ATATGAGTTGA--TTTTGAAACAGAAATTGAATTACCTCAGCGTCTCCCGAGGCTTAACTCACCT
1 ATATGAGTTGATTTTTTGAAACAGAAATTGAATTACCTCAGCGTCTCCCGAGGCTCAACTCACCT
69787465 CTCGCA
66 CTCGCA
69787471 ATATGAGTTGA-TTTTTGAAACAGAAATTGAATTACCTCAG-GTCT-CCGAGGCTCAA-TCACCT
1 ATATGAGTTGATTTTTTGAAACAGAAATTGAATTACCTCAGCGTCTCCCGAGGCTCAACTCACCT
69787532 CTCGCA
66 CTCGCA
* * *
69787538 ATATGAGTTGATTTTTTGACACA-AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
1 ATATGAGTTGATTTTTTGAAACAGAAATTG-AATTACCTCAGCGTCTCCCGAGGCTCAACTCACC
69787602 TCTCGCA
65 TCTCGCA
*
69787609 GTATGAGTTGATTTTTTTTGAAACAGAAAT
1 ATATGAGTTGA--TTTTTTGAAACAGAAAT
69787639 AAAAACATCA
Statistics
Matches: 153, Mismatches: 6, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
67 29 0.19
68 31 0.20
69 18 0.12
70 38 0.25
71 22 0.14
73 11 0.07
74 4 0.03
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (71 bp):
ATATGAGTTGATTTTTTGAAACAGAAATTGAATTACCTCAGCGTCTCCCGAGGCTCAACTCACCT
CTCGCA
Found at i:69802283 original size:16 final size:15
Alignment explanation
Indices: 69802257--69802291 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
69802247 TGATGTGAAT
69802257 AATATAAAATATTAA
1 AATATAAAATATTAA
*
69802272 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
69802288 AATA
1 AATA
69802292 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:69802472 original size:20 final size:21
Alignment explanation
Indices: 69802430--69802472 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
69802420 CCTTTTTTAG
* *
69802430 AATAATAATTAAATATACGAA
1 AATAATAATTAAATACACAAA
*
69802451 AATAAT-ATTATATACACAAA
1 AATAATAATTAAATACACAAA
69802471 AA
1 AA
69802473 GGTATATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.63, C:0.07, G:0.02, T:0.28
Consensus pattern (21 bp):
AATAATAATTAAATACACAAA
Found at i:69802644 original size:21 final size:23
Alignment explanation
Indices: 69802602--69802644 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
69802592 AGTATTTCAT
*
69802602 AGTATGTACATGAGACAATATAA
1 AGTATATACATGAGACAATATAA
69802625 AGTATATACAT-AGA-AATATA
1 AGTATATACATGAGACAATATA
69802645 CAAGAAGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 3 0.16
23 10 0.53
ACGTcount: A:0.51, C:0.07, G:0.14, T:0.28
Consensus pattern (23 bp):
AGTATATACATGAGACAATATAA
Found at i:69802655 original size:23 final size:23
Alignment explanation
Indices: 69802608--69802657 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
69802598 TCATAGTATG
*
69802608 TACATGAGACAATATAAAGTATA
1 TACATGAGACAATATAAAGAATA
69802631 TACAT-AGA-AATATACAAGAAGTA
1 TACATGAGACAATATA-AAGAA-TA
69802654 TACA
1 TACA
69802658 ACTAATAACA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
21 6 0.25
22 7 0.29
23 11 0.46
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (23 bp):
TACATGAGACAATATAAAGAATA
Found at i:69802689 original size:11 final size:11
Alignment explanation
Indices: 69802673--69802702 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
69802663 TAACATTAAG
69802673 AATATATATAT
1 AATATATATAT
*
69802684 AATATAAATAT
1 AATATATATAT
69802695 AATATATA
1 AATATATA
69802703 CAATATATAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AATATATATAT
Found at i:69803234 original size:15 final size:15
Alignment explanation
Indices: 69803216--69803264 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
69803206 AAAAAGGAAA
69803216 AAAAATAAAAAAAAT
1 AAAAATAAAAAAAAT
*
69803231 AAAAATAAAAAAGAGT
1 AAAAATAAAAAA-AAT
* *
69803247 -AAAATAAAGAAGAT
1 AAAAATAAAAAAAAT
69803261 AAAA
1 AAAA
69803265 TCACCTTTAG
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
14 1 0.04
15 25 0.89
16 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (15 bp):
AAAAATAAAAAAAAT
Found at i:69803540 original size:23 final size:24
Alignment explanation
Indices: 69803492--69803538 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
69803482 TTTTTTGGGG
69803492 GGTTAGGTTTTTCTTTTTTTTTTT
1 GGTTAGGTTTTTCTTTTTTTTTTT
69803516 GGTTAGGTTTTTCTTTTTTTTTT
1 GGTTAGGTTTTTCTTTTTTTTTT
69803539 GGGAGGGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.04, C:0.04, G:0.17, T:0.74
Consensus pattern (24 bp):
GGTTAGGTTTTTCTTTTTTTTTTT
Found at i:69807655 original size:33 final size:33
Alignment explanation
Indices: 69807617--69807684 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 33
69807607 GATTAATTCT
* *
69807617 ATATTTTATGTATCATTATATTAAATTATTTAA
1 ATATTTCATATATCATTATATTAAATTATTTAA
* *
69807650 ATATTTCATATCTCTTTATATTAAATTATTTAA
1 ATATTTCATATATCATTATATTAAATTATTTAA
69807683 AT
1 AT
69807685 TTTATTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.54
Consensus pattern (33 bp):
ATATTTCATATATCATTATATTAAATTATTTAA
Found at i:69807758 original size:25 final size:25
Alignment explanation
Indices: 69807726--69807790 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 25
69807716 TTTATATAGC
*
69807726 ATTAATTTTAAAAATAATTTATATTA
1 ATTATTTTTAAAAA-AATTTATATTA
* *
69807752 ATTATTTTTTATAAAATTTATATTA
1 ATTATTTTTAAAAAAATTTATATTA
69807777 ATTACTATTTTAAA
1 ATTA-T-TTTTAAA
69807791 TTTATATTCC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 15 0.47
26 12 0.38
27 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
ATTATTTTTAAAAAAATTTATATTA
Found at i:69807795 original size:23 final size:25
Alignment explanation
Indices: 69807741--69807798 Score: 84
Period size: 25 Copynumber: 2.4 Consensus size: 25
69807731 TTTTAAAAAT
* *
69807741 AATTTATATTAATTATTTTTTATAA
1 AATTTATATTAATTACTATTTATAA
69807766 AATTTATATTAATTACTATTT-T-A
1 AATTTATATTAATTACTATTTATAA
69807789 AATTTATATT
1 AATTTATATT
69807799 CCATGCATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
23 11 0.35
24 1 0.03
25 19 0.61
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.59
Consensus pattern (25 bp):
AATTTATATTAATTACTATTTATAA
Found at i:69808223 original size:13 final size:13
Alignment explanation
Indices: 69808205--69808229 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
69808195 CTTTGCCCCT
69808205 TAAAATTATAAAC
1 TAAAATTATAAAC
69808218 TAAAATTATAAA
1 TAAAATTATAAA
69808230 AATTTAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAAATTATAAAC
Found at i:69810602 original size:15 final size:17
Alignment explanation
Indices: 69810582--69810618 Score: 60
Period size: 15 Copynumber: 2.3 Consensus size: 17
69810572 TTCTTACTGC
69810582 TTTTTATTTTT-TATT-
1 TTTTTATTTTTATATTA
69810597 TTTTTATTTTTATATTA
1 TTTTTATTTTTATATTA
69810614 TTTTT
1 TTTTT
69810619 TATAAGTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 11 0.55
16 4 0.20
17 5 0.25
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTTATTTTTATATTA
Found at i:69810890 original size:17 final size:16
Alignment explanation
Indices: 69810856--69810893 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 16
69810846 TATCATATGT
69810856 ATATAAATATAAAAAA
1 ATATAAATATAAAAAA
69810872 ATATAAA-ATAGAAATAA
1 ATATAAATATA-AAA-AA
69810889 ATATA
1 ATATA
69810894 TAAAGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 3 0.15
16 10 0.50
17 7 0.35
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (16 bp):
ATATAAATATAAAAAA
Found at i:69810903 original size:17 final size:18
Alignment explanation
Indices: 69810855--69810897 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
69810845 TTATCATATG
* *
69810855 TATATAAATATAAAAAAA
1 TATATAAATAGAAATAAA
69810873 TATA-AAATAGAAATAAA
1 TATATAAATAGAAATAAA
69810890 TATATAAA
1 TATATAAA
69810898 GAAAATTCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (18 bp):
TATATAAATAGAAATAAA
Found at i:69810917 original size:29 final size:28
Alignment explanation
Indices: 69810855--69810917 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 28
69810845 TTATCATATG
69810855 TATAT-AAATATAAAAAAATATAAAATA
1 TATATAAAATATAAAAAAATATAAAATA
* * *
69810882 GAAATAAATATATAAAGAAAAT-TCAAATA
1 TATATAAA-ATATAAA-AAAATATAAAATA
69810911 TATATAA
1 TATATAA
69810918 TCTAGGGATA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
27 3 0.11
28 2 0.07
29 18 0.64
30 5 0.18
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.29
Consensus pattern (28 bp):
TATATAAAATATAAAAAAATATAAAATA
Found at i:69811292 original size:19 final size:21
Alignment explanation
Indices: 69811261--69811309 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
69811251 TAAACTTTTT
69811261 TATATTT-AAAAAA-TT-ATA
1 TATATTTAAAAAAATTTAATA
*
69811279 TATTTTTAAAAAAATTTAATA
1 TATATTTAAAAAAATTTAATA
69811300 TATATTTAAA
1 TATATTTAAA
69811310 TTTTTAGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 6 0.23
19 6 0.23
20 2 0.08
21 12 0.46
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
TATATTTAAAAAAATTTAATA
Found at i:69826215 original size:21 final size:21
Alignment explanation
Indices: 69826189--69826229 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
69826179 CATTAAGCAA
*
69826189 TGAAAAATGGGAAGAAAAAGG
1 TGAAAAATGGAAAGAAAAAGG
* *
69826210 TGAAAAGTTGAAAGAAAAAG
1 TGAAAAATGGAAAGAAAAAG
69826230 AAAAAAAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.29, T:0.12
Consensus pattern (21 bp):
TGAAAAATGGAAAGAAAAAGG
Found at i:69838820 original size:148 final size:141
Alignment explanation
Indices: 69838559--69838851 Score: 496
Period size: 148 Copynumber: 2.0 Consensus size: 141
69838549 TCTATCCTTG
69838559 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAGGAATTAATTCAAGCTT
1 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAGGAATTAATTCAAGCTT
69838624 CAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATTAGTACAC
66 CAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATTAGTACAC
69838689 AAGGCACAGAA
131 AAGGCACAGAA
* *
69838700 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTTATCAGAGAATCAATTAATTAATT
1 GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAG-------GAATTAATT
*
69838765 CAAGCTTCAAGTCTCTAAGTAAATCAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATT
59 CAAGCTTCAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATT
69838830 AGTACACAAGGCACAGAA
124 AGTACACAAGGCACAGAA
69838848 GCTG
1 GCTG
69838852 TCCATTACAA
Statistics
Matches: 142, Mismatches: 3, Indels: 7
0.93 0.02 0.05
Matches are distributed among these distances:
141 48 0.34
148 94 0.66
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (141 bp):
GCTGCTTCAAGTGAACAGGGAAAGAAACAACATTGCTAATTAATCAGAGGAATTAATTCAAGCTT
CAAGTCTCTAAGTAAAACAAAGCCTTTTCATCAATTGCATATTTCAAACAACACAATTAGTACAC
AAGGCACAGAA
Found at i:69845104 original size:46 final size:46
Alignment explanation
Indices: 69845037--69845128 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
69845027 GCACCCATAA
69845037 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
1 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
*
69845083 AACACACAATAGATCGCATTTTGTCATCTATATATAAGAAAGTTGT
1 AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
69845129 CAAACATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (46 bp):
AACACACAATAGATCGCATTTTATCATCTATATATAAGAAAGTTGT
Found at i:69847305 original size:3 final size:3
Alignment explanation
Indices: 69847297--69847332 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
69847287 CTTGTTTTTC
69847297 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
69847333 AGAGAGGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:69852813 original size:27 final size:27
Alignment explanation
Indices: 69852783--69852869 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
69852773 TTTGCACATT
69852783 TAGTGCTCAGAAATTAATTCACACACA
1 TAGTGCTCAGAAATTAATTCACACACA
* * * *
69852810 TAGTGCT--TAAATCCAACTCACACACT
1 TAGTGCTCAGAAAT-TAATTCACACACA
69852836 TAGTGCTCAGAAATTAATTCACACACA
1 TAGTGCTCAGAAATTAATTCACACACA
69852863 TAGTGCT
1 TAGTGCT
69852870 TAAATCCAAC
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
25 4 0.08
26 17 0.35
27 24 0.49
28 4 0.08
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (27 bp):
TAGTGCTCAGAAATTAATTCACACACA
Found at i:69852834 original size:26 final size:26
Alignment explanation
Indices: 69852801--69852895 Score: 111
Period size: 26 Copynumber: 3.6 Consensus size: 26
69852791 AGAAATTAAT
69852801 TCACACACATAGTGCTTAAATCCAAC
1 TCACACACATAGTGCTTAAATCCAAC
* * * *
69852827 TCACACACTTAGTGCTCAGAAAT-TAAT
1 TCACACACATAGTGCT--TAAATCCAAC
69852854 TCACACACATAGTGCTTAAATCCAAC
1 TCACACACATAGTGCTTAAATCCAAC
* *
69852880 TCGCACACTTAGTGCT
1 TCACACACATAGTGCT
69852896 CAGTATCAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
25 4 0.07
26 31 0.55
27 17 0.30
28 4 0.07
ACGTcount: A:0.35, C:0.28, G:0.11, T:0.26
Consensus pattern (26 bp):
TCACACACATAGTGCTTAAATCCAAC
Found at i:69852911 original size:27 final size:27
Alignment explanation
Indices: 69852776--69852921 Score: 111
Period size: 27 Copynumber: 5.5 Consensus size: 27
69852766 ATCTGATTTT
* *
69852776 GCACATTTAGTGCTCAGAAAT-TAATTC
1 GCACACTTAGTGCTCAG-AATCAAATTC
* * * * *
69852803 ACACACATAGTGCTTA-AATCCAACTC
1 GCACACTTAGTGCTCAGAATCAAATTC
* *
69852829 ACACACTTAGTGCTCAGAAAT-TAATTC
1 GCACACTTAGTGCTCAG-AATCAAATTC
* * * * *
69852856 ACACACATAGTGCTTA-AATCCAACTC
1 GCACACTTAGTGCTCAGAATCAAATTC
*
69852882 GCACACTTAGTGCTCAGTATCAAATTC
1 GCACACTTAGTGCTCAGAATCAAATTC
69852909 GCACACTTAGTGC
1 GCACACTTAGTGC
69852922 ATCCCTCAAA
Statistics
Matches: 94, Mismatches: 20, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
25 6 0.06
26 35 0.37
27 50 0.53
28 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.27
Consensus pattern (27 bp):
GCACACTTAGTGCTCAGAATCAAATTC
Found at i:69852921 original size:53 final size:53
Alignment explanation
Indices: 69852776--69852898 Score: 228
Period size: 53 Copynumber: 2.3 Consensus size: 53
69852766 ATCTGATTTT
*
69852776 GCACATTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
1 GCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
*
69852829 ACACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
1 GCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
69852882 GCACACTTAGTGCTCAG
1 GCACACTTAGTGCTCAG
69852899 TATCAAATTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 67 1.00
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.27
Consensus pattern (53 bp):
GCACACTTAGTGCTCAGAAATTAATTCACACACATAGTGCTTAAATCCAACTC
Found at i:69855331 original size:35 final size:35
Alignment explanation
Indices: 69855287--69855354 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
69855277 AAAACTTAAA
69855287 TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
1 TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
* *
69855322 TTTTGAATCCATTAAAACTTAAGAAATTGAGGT
1 TTTTAAATCCATTAAAACTCAAGAAATTGAGGT
69855355 TTTGAGTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.35
Consensus pattern (35 bp):
TTTTAAATCCATTAAAACTCAAGAAATTGAGGTAT
Found at i:69867104 original size:19 final size:18
Alignment explanation
Indices: 69867080--69867120 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
69867070 GAAATTTAAA
*
69867080 TTAAGTCGAATAAATTTAT
1 TTAAGTCAAAT-AATTTAT
*
69867099 TTAAGTCAAATAATTTTT
1 TTAAGTCAAATAATTTAT
69867117 TTAA
1 TTAA
69867121 CTAAACATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 10 0.50
19 10 0.50
ACGTcount: A:0.41, C:0.05, G:0.07, T:0.46
Consensus pattern (18 bp):
TTAAGTCAAATAATTTAT
Found at i:69867119 original size:18 final size:19
Alignment explanation
Indices: 69867066--69867120 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
69867056 GAAGTGAGTG
*
69867066 AAATGAAATTTAAATTAAGTC
1 AAAT-AAATTT-ATTTAAGTC
*
69867087 GAATAAATTTATTTAAGTC
1 AAATAAATTTATTTAAGTC
*
69867106 AAAT-AATTTTTTTAA
1 AAATAAATTTATTTAA
69867121 CTAAACATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 10 0.33
19 11 0.37
20 6 0.20
21 3 0.10
ACGTcount: A:0.47, C:0.04, G:0.07, T:0.42
Consensus pattern (19 bp):
AAATAAATTTATTTAAGTC
Found at i:69867983 original size:5 final size:5
Alignment explanation
Indices: 69867973--69868020 Score: 82
Period size: 5 Copynumber: 10.0 Consensus size: 5
69867963 ATATTTTCAA
69867973 TTAAT TTAAT TTAAT TTAAT TT-AT TTAAT TTAAT TTAAT TT-AT TTAAT
1 TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT TTAAT
69868021 ATTATATTAT
Statistics
Matches: 41, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
4 8 0.20
5 33 0.80
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTAAT
Found at i:69867998 original size:19 final size:19
Alignment explanation
Indices: 69867971--69868020 Score: 91
Period size: 19 Copynumber: 2.6 Consensus size: 19
69867961 TAATATTTTC
*
69867971 AATTAATTTAATTTAATTT
1 AATTTATTTAATTTAATTT
69867990 AATTTATTTAATTTAATTT
1 AATTTATTTAATTTAATTT
69868009 AATTTATTTAAT
1 AATTTATTTAAT
69868021 ATTATATTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
AATTTATTTAATTTAATTT
Found at i:69868025 original size:10 final size:9
Alignment explanation
Indices: 69867971--69868025 Score: 74
Period size: 10 Copynumber: 5.8 Consensus size: 9
69867961 TAATATTTTC
*
69867971 AATTAATTT
1 AATTTATTT
69867980 AATTTAATTT
1 AATTT-ATTT
69867990 AATTTATTT
1 AATTTATTT
69867999 AATTTAATTT
1 AATTT-ATTT
69868009 AATTTATTT
1 AATTTATTT
69868018 AATATTAT
1 AAT-TTAT
69868026 ATTATCATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
9 20 0.48
10 22 0.52
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
AATTTATTT
Found at i:69875387 original size:36 final size:36
Alignment explanation
Indices: 69875347--69875426 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
69875337 TGTTAACTGA
69875347 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
1 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
69875383 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
1 GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
69875419 GACTAAAT
1 GAC-AAAT
69875427 TGTAAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
36 39 0.91
37 4 0.09
ACGTcount: A:0.42, C:0.04, G:0.21, T:0.33
Consensus pattern (36 bp):
GACAAATAAAATTAATTGATGGGTTAATTGATTAGG
Found at i:69879968 original size:12 final size:13
Alignment explanation
Indices: 69879946--69879995 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 13
69879936 GGCACTATTG
69879946 AAAAGTATGAACT
1 AAAAGTATGAACT
69879959 AAAA-TATGAA-T
1 AAAAGTATGAACT
69879970 AAAGAATGTATGAACT
1 -AA-AA-GTATGAACT
69879986 AAAA-TATGAA
1 AAAAGTATGAA
69879996 TTGGGTTGGT
Statistics
Matches: 32, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
11 1 0.03
12 14 0.44
13 6 0.19
14 2 0.06
15 8 0.25
16 1 0.03
ACGTcount: A:0.58, C:0.04, G:0.14, T:0.24
Consensus pattern (13 bp):
AAAAGTATGAACT
Found at i:69885747 original size:18 final size:18
Alignment explanation
Indices: 69885690--69885749 Score: 63
Period size: 17 Copynumber: 3.4 Consensus size: 18
69885680 AATGTAGGTA
69885690 AAAAT-ATAATGATATTT
1 AAAATAATAATGATATTT
* * *
69885707 GAAATAAT--TTATATATA
1 AAAATAATAATGATAT-TT
69885724 AAAATAATAATGATATTT
1 AAAATAATAATGATATTT
69885742 AAAATAAT
1 AAAATAAT
69885750 TATTTAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
16 5 0.15
17 12 0.36
18 11 0.33
19 5 0.15
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATAATAATGATATTT
Found at i:69885977 original size:16 final size:17
Alignment explanation
Indices: 69885945--69885977 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
69885935 TTATTATTTT
69885945 ATTTATATAAATAAAAA
1 ATTTATATAAATAAAAA
*
69885962 ATTTAT-TAATTAAAAA
1 ATTTATATAAATAAAAA
69885978 GATGAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTTATATAAATAAAAA
Found at i:69894917 original size:18 final size:19
Alignment explanation
Indices: 69894894--69894932 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
69894884 TATAAAGAAA
69894894 AAAAATATG-CATATATAT
1 AAAAATATGACATATATAT
69894912 AAAAATATGTACATATATAT
1 AAAAATATG-ACATATATAT
69894932 A
1 A
69894933 TAGGTGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAATATGACATATATAT
Found at i:69895197 original size:36 final size:36
Alignment explanation
Indices: 69895157--69895236 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
69895147 ATACATATAA
* *
69895157 ATATATATACT-TATAAAAATAAAAAT-ACGTATATGT
1 ATATATATA-TATATAAAAAGAAAAATGA-GTATACGT
* *
69895193 ATATAGATATATATAAAAAGAAATATGAGTATACGT
1 ATATATATATATATAAAAAGAAAAATGAGTATACGT
69895229 ATATATAT
1 ATATATAT
69895237 TAAACAAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.03
36 35 0.95
37 1 0.03
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.35
Consensus pattern (36 bp):
ATATATATATATATAAAAAGAAAAATGAGTATACGT
Found at i:69895380 original size:3 final size:3
Alignment explanation
Indices: 69895369--69895423 Score: 67
Period size: 3 Copynumber: 18.3 Consensus size: 3
69895359 CAATAATACC
* * *
69895369 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
69895414 AAT AAT AAT A
1 AAT AAT AAT A
69895424 GCAAAAGTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 43 0.98
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:69908823 original size:118 final size:116
Alignment explanation
Indices: 69908695--69908914 Score: 370
Period size: 118 Copynumber: 1.9 Consensus size: 116
69908685 TCCTTTTAAA
*
69908695 AAAAACACTATTTTTCTTAAAGATTAAAG-TTCTTACTTTGAAATAGTTGAAAAAAAATCAAAAC
1 AAAAACACTATTTTTCTTAAAGATTAAAGCTT-TTAATTTGAAATAGTTG-AAAAAAATCAAAAC
*
69908759 TTTGTTTTAAAAATTTAAACTTTCCTTTAAAATAACTAAACTTTATTTTTTTTT
64 TTT-ATTTAAAAATTTAAACTTTCCTTTAAAATAACTAAACTTTATTTTTTTTT
*
69908813 AAAAATACTATTTTTCTTAAAGATTAAAGCTTTTAATTTGAAATAGTTGAAAAAAATCAAAACTT
1 AAAAACACTATTTTTCTTAAAGATTAAAGCTTTTAATTTGAAATAGTTGAAAAAAATCAAAACTT
*
69908878 TATTTAAAAATTTAAACTTTCTTTTAAAATAACTAAA
66 TATTTAAAAATTTAAACTTTCCTTTAAAATAACTAAA
69908915 AAATAGATTT
Statistics
Matches: 97, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
116 34 0.35
117 17 0.18
118 44 0.45
119 2 0.02
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (116 bp):
AAAAACACTATTTTTCTTAAAGATTAAAGCTTTTAATTTGAAATAGTTGAAAAAAATCAAAACTT
TATTTAAAAATTTAAACTTTCCTTTAAAATAACTAAACTTTATTTTTTTTT
Found at i:69908888 original size:19 final size:19
Alignment explanation
Indices: 69908864--69908907 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
69908854 AATAGTTGAA
69908864 AAAAATCAAAACTTTATTT
1 AAAAATCAAAACTTTATTT
** *
69908883 AAAAATTTAAACTTTCTTT
1 AAAAATCAAAACTTTATTT
*
69908902 TAAAAT
1 AAAAAT
69908908 AACTAAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAAATCAAAACTTTATTT
Found at i:69922432 original size:18 final size:18
Alignment explanation
Indices: 69922387--69922462 Score: 91
Period size: 18 Copynumber: 4.2 Consensus size: 18
69922377 TACGACCATT
69922387 TACAGCACTATTCACGTA
1 TACAGCACTATTCACGTA
*
69922405 TA-TGACACTATTCACGTA
1 TACAG-CACTATTCACGTA
* *
69922423 TACAGTACTATTTACGTA
1 TACAGCACTATTCACGTA
* *
69922441 TACAGTACTGTTCACGTA
1 TACAGCACTATTCACGTA
69922459 TACA
1 TACA
69922463 ATAGTTGGGA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
17 1 0.02
18 48 0.96
19 1 0.02
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (18 bp):
TACAGCACTATTCACGTA
Found at i:69927370 original size:18 final size:19
Alignment explanation
Indices: 69927347--69927389 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
69927337 CCACAACAGT
69927347 AAAAAA-ACTGAAAAAGAA
1 AAAAAACACTGAAAAAGAA
*
69927365 AAAAAACACTGAAAACGAA
1 AAAAAACACTGAAAAAGAA
69927384 AAAAAA
1 AAAAAA
69927390 TAAAAAATGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.77, C:0.09, G:0.09, T:0.05
Consensus pattern (19 bp):
AAAAAACACTGAAAAAGAA
Found at i:69927552 original size:19 final size:20
Alignment explanation
Indices: 69927528--69927574 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
69927518 AATAAAGGGA
*
69927528 AAGAAAGGAGAA-GAGAAGG
1 AAGAAAGAAGAACGAGAAGG
69927547 AAGAAA-AAGAACGAGAAGG
1 AAGAAAGAAGAACGAGAAGG
*
69927566 AAAAAAGAA
1 AAGAAAGAA
69927575 AGAAAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 4 0.17
19 18 0.75
20 2 0.08
ACGTcount: A:0.66, C:0.02, G:0.32, T:0.00
Consensus pattern (20 bp):
AAGAAAGAAGAACGAGAAGG
Found at i:69927678 original size:20 final size:19
Alignment explanation
Indices: 69927642--69927688 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
69927632 GTGTTTTTGC
69927642 TGTTATTATTATTGTTGATT
1 TGTTATTATTATTGTTG-TT
*
69927662 T-TTATTATTTTTTGTTGTT
1 TGTTATTA-TTATTGTTGTT
69927681 TGTTATTA
1 TGTTATTA
69927689 ACATTGTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 9 0.38
20 15 0.62
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.70
Consensus pattern (19 bp):
TGTTATTATTATTGTTGTT
Found at i:69933131 original size:72 final size:72
Alignment explanation
Indices: 69933014--69933154 Score: 246
Period size: 72 Copynumber: 2.0 Consensus size: 72
69933004 GCCTCCCGAT
* *
69933014 GAGCCCGGAAAATTGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATG
1 GAGCCCGAAAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATG
69933079 CGATGAC
66 CGATGAC
* *
69933086 GAGCCCGAAAAATAGTCATTGCCTGCCAAATCCGGATGATAAGAAGTATCAGTCGAATGTGAATG
1 GAGCCCGAAAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATG
69933151 CGAT
66 CGAT
69933155 CACTCGGACT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.33, C:0.21, G:0.26, T:0.21
Consensus pattern (72 bp):
GAGCCCGAAAAATAGTCATTGCCCGCCAAATCCGGATGATAAGAAGTATCAGCCGAATGTGAATG
CGATGAC
Found at i:69934883 original size:18 final size:17
Alignment explanation
Indices: 69934842--69934883 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
69934832 TAAATTTCAA
*
69934842 TTATTA-ATTTTAATGT
1 TTATTAGATTTTAATAT
*
69934858 TTAATAGATTTTAAATAT
1 TTATTAGATTTT-AATAT
69934876 TTATTAGA
1 TTATTAGA
69934884 ATAACTTATA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 5 0.24
17 5 0.24
18 11 0.52
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
TTATTAGATTTTAATAT
Found at i:69935327 original size:146 final size:148
Alignment explanation
Indices: 69935014--69936220 Score: 1552
Period size: 146 Copynumber: 8.2 Consensus size: 148
69935004 ATAAGTAAAA
* * * * *
69935014 TATTTTCGTATATTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* * * * *
69935078 TTTTTTTTATATTAATTTAATACATAACCCTGAGTTTGGCACTTTCTTCGTATTTTTTTGTTTTC
66 --TTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA---TTTTATTTTC
69935143 GTATCTTATTTTTTAAAATATAT
126 GTATCTTATTTTTTAAAATATAT
* *
69935166 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATATTTAAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
** *
69935231 TTTTTTATATTTTTTTAATAAATAACCCTGATTTTAGCACTTAATTCGTA-TTT-TTTTCGTATC
66 TTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTATC
*
69935294 TTATTTTTTAAAAAATAT
131 TTATTTTTTAAAATATAT
* * *
69935312 TATTTTCATATTTTATTTCTTTATATTATTTTATTACATAATATTTCAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
** * *
69935377 TTTTTTATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCGTA-TTT-TTTTCGTATA
66 TTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTATC
69935440 TTATTTTTTAAAATATAT
131 TTATTTTTTAAAATATAT
* * * * *
69935458 TATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* *
69935523 TTTTTTATATTAATTTAATAAATAATCCTGATTTT-GACACTTTCTTCGTATTTTTATTTTCGTA
66 TTTTTTATATTAATTTAATAAATAACCCTGATTTTAG-CACTTTATTCGTA-TTTTATTTTCGTA
69935587 TCTTATTTTTTAAAATATAT
129 TCTTATTTTTTAAAATATAT
* *
69935607 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* *
69935672 TTTTTTATATT-TTTTCAATAAATAATCCTGATTTTAGCACTTTATTCGTA-TTT-TTTTCGTAT
66 TTTTTTATATTAATTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTAT
*
69935734 ATTATTTTTTAAAATATAT
130 CTTATTTTTTAAAATATAT
* * * *
69935753 TATTTTCGTATTTTATTT-TTT-TATTATTTTAGCAAAAAATGTTTCAAATGTATTACTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
*
69935816 TTTCTTTATATTAATTTAATAAATAACCCTGATTTT-GACACTTTCTTCGTAATTTTTTTATTTT
66 TTT-TTTATATTAATTTAATAAATAACCCTGATTTTAG-CACTTTATTCGT-A---TTTTATTTT
69935880 CGTATCTTATTTTTTAAAATATAT
125 CGTATCTTATTTTTTAAAATATAT
*
69935904 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* *
69935969 TTTTTTTATATT-TTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA-TTT-TTTTCGTCT
66 -TTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTAT
*
69936031 ATTATTTTTTAAAATATAT
130 CTTATTTTTTAAAATATAT
** * *
69936050 TATTTTCGTATTTTA------T-T-TTA--GCA-TA-A-AATCTTTCAAATGTATTATTTAAGTT
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
* * * * *
69936102 TTTTTTATATTAATTTAATAAATAACCCTGACTTTGGCACCTTGTTCGTATTTTTTTATTTTCGG
66 TTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA---TTTTATTTTCGT
*
69936167 ATTTTATTTTTTAAAATATAT
128 ATCTTATTTTTTAAAATATAT
* *
69936188 TATTTTCATATTTTATTTTTTTATATTATTTTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTA
69936221 ACAAAAAAAC
Statistics
Matches: 938, Mismatches: 81, Indels: 76
0.86 0.07 0.07
Matches are distributed among these distances:
132 11 0.01
133 56 0.06
134 1 0.00
135 2 0.00
136 1 0.00
137 3 0.00
138 42 0.04
139 1 0.00
140 1 0.00
144 42 0.04
145 41 0.04
146 359 0.38
147 9 0.01
148 7 0.01
149 127 0.14
150 4 0.00
151 89 0.09
152 53 0.06
153 86 0.09
154 3 0.00
ACGTcount: A:0.29, C:0.08, G:0.07, T:0.57
Consensus pattern (148 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAGTG
TTTTTTATATTAATTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTATTTTCGTATC
TTATTTTTTAAAATATAT
Found at i:69935991 original size:297 final size:294
Alignment explanation
Indices: 69935014--69936220 Score: 1700
Period size: 297 Copynumber: 4.1 Consensus size: 294
69935004 ATAAGTAAAA
* * * * * *
69935014 TATTTTCGTATATTATTT-TTTATATTATTTTAGCAAAAAATGTTTCAAATGTATTATGTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATG
* * * * *
69935078 TTTTTTTTATATTAATTTAATACATAACCCTGAGTTTGGCACTTTCTTCGTATTTTTTTGTTTTC
66 -TTTTTTTATATT-TTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTA----TTT-TTTTC
* * * *
69935143 GTATCTTATTTTTTAAAATATATTATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAAT
124 GTATATTATTTTTTAAAATATATTATTTTCGTATTTTATTT-TTTATATTATTTTAGCAAAAAAT
* * **
69935208 ATTTAAAATGTATTATTTAAGTGTTTTTTATATTTTTTTAATAAATAACCCTGATTTT-AGCACT
188 GTTTCAAATGTATTATTTAAGTGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGA-CACT
** *
69935272 TAATTCGTA--TTT-TTTTCGTATCTTATTTTTTAAAAAATAT
252 TTCTTCGTATTTTTATTTTCGTATCTTATTTTTTAAAATATAT
* * * *
69935312 TATTTTCATATTTTATTTCTTTATATTATTTTATTACATAATATTTCAAATGTATTATTTAAGTG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATG
*
69935377 -TTTTTTATATTTTTTTAATAAATAACCCTAATTTTAGCACTTTATTCGTATTTTTTTCGTATAT
66 TTTTTTTATA-TTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATAT
69935441 TATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTTATATTATTTTAGCAAAAAATGTTTCA
130 TATTTTTTAAAATATATTATTTTCGTATTTTA-TTTTTTATATTATTTTAGCAAAAAATGTTTCA
* *
69935506 AATGTATTATGTAAGTGTTTTTTATATTAATTTAATAAATAATCCTGATTTTGACACTTTCTTCG
194 AATGTATTATTTAAGTGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCG
69935571 TATTTTTATTTTCGTATCTTATTTTTTAAAATATAT
259 TATTTTTATTTTCGTATCTTATTTTTTAAAATATAT
*
69935607 TATTTTCGTATTTTATTTCTTCATATTATTTTAGTACATAATGTTTCAAATGTATTATTT-AA-G
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATG
*
69935670 TATTTTTTATATTTTTTCAATAAATAATCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATA
66 T-TTTTTTATATTTTTT-AATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATA
69935735 TTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTT-TATTATTTTAGCAAAAAATGTTTCA
129 TTATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCA
*
69935799 AATGTATTACTTAAGTGTTTCTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTC
194 AATGTATTATTTAAGTGTTT-TTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTC
69935864 GTAATTTTTTTATTTTCGTATCTTATTTTTTAAAATATAT
258 GT-A--TTTTTATTTTCGTATCTTATTTTTTAAAATATAT
69935904 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATG
1 TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATG
*
69935969 TTTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTCTATT
66 TTTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATT
* *
69936034 ATTTTTTAAAATATATTATTTTCG-----TA-----T-T-TTATTTTAGCATAAAATCTTTCAAA
131 ATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAA
* * * * *
69936087 TGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAACCCTGACTTTGGCACCTTGTTCGTA
196 TGTATTATTTAAGTGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTA
* *
69936152 TTTTTTTATTTTCGGATTTTATTTTTTAAAATATAT
261 --TTTTTATTTTCGTATCTTATTTTTTAAAATATAT
* *
69936188 TATTTTCATATTTTATTTTTTTATATTATTTTA
1 TATTTTCGTATTTTATTTCTTTATATTATTTTA
69936221 ACAAAAAAAC
Statistics
Matches: 841, Mismatches: 52, Indels: 46
0.90 0.06 0.05
Matches are distributed among these distances:
284 66 0.08
285 42 0.05
286 39 0.05
287 2 0.00
292 127 0.15
293 51 0.06
294 61 0.07
295 171 0.20
297 205 0.24
298 35 0.04
299 42 0.05
ACGTcount: A:0.29, C:0.08, G:0.07, T:0.57
Consensus pattern (294 bp):
TATTTTCGTATTTTATTTCTTTATATTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATG
TTTTTTTATATTTTTTAATAAATAACCCTGATTTTAGCACTTTATTCGTATTTTTTTCGTATATT
ATTTTTTAAAATATATTATTTTCGTATTTTATTTTTTATATTATTTTAGCAAAAAATGTTTCAAA
TGTATTATTTAAGTGTTTTTTATATTAATTTAATAAATAACCCTGATTTTGACACTTTCTTCGTA
TTTTTATTTTCGTATCTTATTTTTTAAAATATAT
Found at i:69936084 original size:133 final size:135
Alignment explanation
Indices: 69935929--69936206 Score: 373
Period size: 133 Copynumber: 2.1 Consensus size: 135
69935919 TTTCTTTATA
* * * *
69935929 TTATTTTAGTACATAATGTTTCAAATGTATTATTTAAATGTTTTTTTATATT-TTTTAATAAATA
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAAT-TTTTTTTATATTAATTTAATAAATA
* * **
69935993 ACCCTGATTTTAGCACTTTATTCGTA-TTT-TTTTCGTCTATTATTTTTTAAAATATATTATTTT
65 ACCCTGACTTTAGCACCTTATTCGTATTTTATTTTCGGATATTATTTTTTAAAATATATTATTTT
*
69936056 CGTATT
130 CATATT
* *
69936062 TTATTTTAGCATAAAATCTTTCAAATGTATTATTTAAGTTTTTTTTATATTAATTTAATAAATAA
1 TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAATTTTTTTTATATTAATTTAATAAATAA
* * *
69936127 CCCTGACTTTGGCACCTTGTTCGTATTTTTTTATTTTCGGATTTTATTTTTTAAAATATATTATT
66 CCCTGACTTTAGCACCTTATTCGTA---TTTTATTTTCGGATATTATTTTTTAAAATATATTATT
69936192 TTCATATT
128 TTCATATT
69936200 TTATTTT
1 TTATTTT
69936207 TTTATATTAT
Statistics
Matches: 125, Mismatches: 14, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
132 12 0.10
133 67 0.54
137 3 0.02
138 43 0.34
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.56
Consensus pattern (135 bp):
TTATTTTAGCACAAAATCTTTCAAATGTATTATTTAAATTTTTTTTATATTAATTTAATAAATAA
CCCTGACTTTAGCACCTTATTCGTATTTTATTTTCGGATATTATTTTTTAAAATATATTATTTTC
ATATT
Found at i:69936803 original size:3 final size:3
Alignment explanation
Indices: 69936786--69936865 Score: 51
Period size: 3 Copynumber: 27.0 Consensus size: 3
69936776 TCCTCCTCCC
* *
69936786 CTT CTT TTT CTTT CTT CTT CTT C-T CTT CTT -TT CTT CTT C-T CCT
1 CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * * *
69936829 CTTT CCT CATT CTC CTT -TT CTT TTT CTC CTT CTT CTT
1 C-TT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT
69936866 TGTTCCCGAA
Statistics
Matches: 59, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
2 8 0.14
3 44 0.75
4 7 0.12
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:69936832 original size:16 final size:16
Alignment explanation
Indices: 69936800--69936858 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
69936790 TTTTTCTTTC
*
69936800 TTCTTCTTCTCTTCTT
1 TTCTTCTTCTCCTCTT
69936816 TTCTTCTTCTCCTC-T
1 TTCTTCTTCTCCTCTT
*
69936831 TTCCTCATTCT-C-CTT
1 TTCTTC-TTCTCCTCTT
*
69936846 TTCTTTTTCTCCT
1 TTCTTCTTCTCCT
69936859 TCTTCTTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 5 0.14
15 13 0.37
16 17 0.49
ACGTcount: A:0.02, C:0.36, G:0.00, T:0.63
Consensus pattern (16 bp):
TTCTTCTTCTCCTCTT
Found at i:69941982 original size:48 final size:48
Alignment explanation
Indices: 69941926--69942017 Score: 175
Period size: 48 Copynumber: 1.9 Consensus size: 48
69941916 GTACTGAATT
69941926 AACTTATACCCATGTTATCATATTAACCAACCAAACAAAGTTGAGATA
1 AACTTATACCCATGTTATCATATTAACCAACCAAACAAAGTTGAGATA
*
69941974 AACTTATACCCATGTTATTATATTAACCAACCAAACAAAGTTGA
1 AACTTATACCCATGTTATCATATTAACCAACCAAACAAAGTTGA
69942018 AATATAAATA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.43, C:0.21, G:0.08, T:0.28
Consensus pattern (48 bp):
AACTTATACCCATGTTATCATATTAACCAACCAAACAAAGTTGAGATA
Found at i:69949330 original size:20 final size:19
Alignment explanation
Indices: 69949280--69949330 Score: 52
Period size: 20 Copynumber: 2.7 Consensus size: 19
69949270 AATTTATAAG
69949280 AAAAA-ATAAAAACTTATT
1 AAAAATATAAAAACTTATT
*
69949298 AAAAATATTAAAA-TTGATAT
1 AAAAATATAAAAACTT-AT-T
*
69949318 AAAATTATAAAAA
1 AAAAATATAAAAA
69949331 ATCATAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 7 0.26
19 8 0.30
20 12 0.44
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATATAAAAACTTATT
Found at i:69949737 original size:23 final size:22
Alignment explanation
Indices: 69949698--69949754 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
69949688 ATTAAATAAA
*
69949698 ATATTAAAAAAATAAAATATAT
1 ATATTAAAAAAATAAAAAATAT
*
69949720 ATATTAAAAACTAA-AAAAAATGT
1 ATATTAAAAA--AATAAAAAATAT
*
69949743 ATACTAAAAAAA
1 ATATTAAAAAAA
69949755 AATAGTTCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 2 0.07
22 10 0.33
23 16 0.53
24 2 0.07
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (22 bp):
ATATTAAAAAAATAAAAAATAT
Found at i:69953245 original size:17 final size:18
Alignment explanation
Indices: 69953220--69953253 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
69953210 TAATATAAAA
*
69953220 TAATTTATTTAA-AATTT
1 TAATATATTTAATAATTT
69953237 TAATATATTTAATAATT
1 TAATATATTTAATAATT
69953254 CATCTTATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATATATTTAATAATTT
Found at i:69953674 original size:3 final size:3
Alignment explanation
Indices: 69953666--69953690 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
69953656 ATGCATCGAA
69953666 GCC GCC GCC GCC GCC GCC GCC GCC G
1 GCC GCC GCC GCC GCC GCC GCC GCC G
69953691 AAGAGCTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.64, G:0.36, T:0.00
Consensus pattern (3 bp):
GCC
Found at i:69956663 original size:21 final size:22
Alignment explanation
Indices: 69956634--69956680 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
69956624 CAGAAGGAGT
*
69956634 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
69956656 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
69956677 GAGT
1 GAGT
69956681 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:69959253 original size:28 final size:30
Alignment explanation
Indices: 69959210--69959268 Score: 77
Period size: 28 Copynumber: 2.0 Consensus size: 30
69959200 CATGTCAACA
**
69959210 TTTAATTTTTTTAAAAT-A-TATTATAATT
1 TTTAATTTTTAAAAAATGATTATTATAATT
*
69959238 TTTAATTTTTAAAAAATGATTTTTATAATT
1 TTTAATTTTTAAAAAATGATTATTATAATT
69959268 T
1 T
69959269 ATTTATGAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 15 0.58
29 1 0.04
30 10 0.38
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (30 bp):
TTTAATTTTTAAAAAATGATTATTATAATT
Found at i:69961012 original size:19 final size:19
Alignment explanation
Indices: 69960988--69961041 Score: 94
Period size: 17 Copynumber: 2.9 Consensus size: 19
69960978 ATAATCTTCA
69960988 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69961007 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69961024 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
69961042 ATATATGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
17 17 0.52
19 16 0.48
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:69961031 original size:22 final size:20
Alignment explanation
Indices: 69961004--69961050 Score: 55
Period size: 19 Copynumber: 2.4 Consensus size: 20
69960994 TGCAATCTTA
69961004 GATATGATACAATCTTAGATAT
1 GATATGAT-CAATCTTAGA-AT
69961026 GATATG--CAATCTTAGAAT
1 GATATGATCAATCTTAGAAT
69961044 -ATATGAT
1 GATATGAT
69961051 TTTGTAATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
17 5 0.22
18 2 0.09
19 10 0.43
22 6 0.26
ACGTcount: A:0.40, C:0.09, G:0.15, T:0.36
Consensus pattern (20 bp):
GATATGATCAATCTTAGAAT
Found at i:69961047 original size:17 final size:17
Alignment explanation
Indices: 69960991--69961048 Score: 73
Period size: 17 Copynumber: 3.3 Consensus size: 17
69960981 ATCTTCAATG
69960991 ATATGCAATCTTAG-AT
1 ATATGCAATCTTAGAAT
*
69961007 ATGATACAATCTTAGATAT
1 AT-ATGCAATCTTAGA-AT
69961026 GATATGCAATCTTAGAAT
1 -ATATGCAATCTTAGAAT
69961044 ATATG
1 ATATG
69961049 ATTTTGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
16 2 0.06
17 16 0.44
18 2 0.06
19 14 0.39
20 2 0.06
ACGTcount: A:0.40, C:0.10, G:0.14, T:0.36
Consensus pattern (17 bp):
ATATGCAATCTTAGAAT
Found at i:69961322 original size:7 final size:7
Alignment explanation
Indices: 69961312--69961397 Score: 82
Period size: 7 Copynumber: 12.0 Consensus size: 7
69961302 TTTATTTTGA
69961312 TTTAGGG
1 TTTAGGG
69961319 TTTAGGG
1 TTTAGGG
*
69961326 TTTTAGGA
1 -TTTAGGG
* *
69961334 TTTAAGA
1 TTTAGGG
*
69961341 TTTAGGA
1 TTTAGGG
69961348 TTTAGGG
1 TTTAGGG
*
69961355 TTTTAGGA
1 -TTTAGGG
* *
69961363 TTTAAGA
1 TTTAGGG
69961370 TTTAGGG
1 TTTAGGG
*
69961377 TTTAAGG
1 TTTAGGG
69961384 TTTAGGG
1 TTTAGGG
69961391 TTTAGGG
1 TTTAGGG
69961398 ATCTTATTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
7 55 0.82
8 12 0.18
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:69961342 original size:29 final size:29
Alignment explanation
Indices: 69961310--69961394 Score: 136
Period size: 29 Copynumber: 3.0 Consensus size: 29
69961300 TTTTTATTTT
69961310 GATTTAGGGTTTAGGGTTTTAGGATTTAA
1 GATTTAGGGTTTAGGGTTTTAGGATTTAA
*
69961339 GATTTAGGATTTAGGGTTTTAGGATTTAA
1 GATTTAGGGTTTAGGGTTTTAGGATTTAA
* *
69961368 GATTTAGGGTTTAAGG-TTTAGGGTTTA
1 GATTTAGGGTTTAGGGTTTTAGGATTTA
69961395 GGGATCTTAT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 10 0.19
29 42 0.81
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.45
Consensus pattern (29 bp):
GATTTAGGGTTTAGGGTTTTAGGATTTAA
Found at i:69961461 original size:45 final size:47
Alignment explanation
Indices: 69961412--69961531 Score: 153
Period size: 44 Copynumber: 2.7 Consensus size: 47
69961402 TATTTTTAAT
69961412 TTTTTTTATATATTTTAATTTTTCAATAATT-AA-ATCATTCCCGGA
1 TTTTTTTATATATTTTAATTTTTCAATAATTCAACATCATTCCCGGA
* ** *
69961457 TTTTTTTATATATTTTAATTTTT---T-TTTCAACCATGTTTCTCGGA
1 TTTTTTTATATATTTTAATTTTTCAATAATTCAA-CATCATTCCCGGA
69961501 TTTTTTTATATATTTTAATTTTTCAATAATT
1 TTTTTTTATATATTTTAATTTTTCAATAATT
69961532 TTAGTATCAT
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
41 2 0.03
42 3 0.05
44 32 0.51
45 23 0.37
47 1 0.02
48 2 0.03
ACGTcount: A:0.27, C:0.09, G:0.04, T:0.60
Consensus pattern (47 bp):
TTTTTTTATATATTTTAATTTTTCAATAATTCAACATCATTCCCGGA
Found at i:69970169 original size:25 final size:25
Alignment explanation
Indices: 69970139--69970251 Score: 165
Period size: 25 Copynumber: 4.5 Consensus size: 25
69970129 GACCTCAGCA
*
69970139 TGCTCTCTGATTATTAGCACGTCAG
1 TGCTCTCTGATTATTAGCACGCCAG
*
69970164 TGCTCTCTGAATATTAGCACGCCAG
1 TGCTCTCTGATTATTAGCACGCCAG
*
69970189 TGCTCTCTGATTATTAGCATGCCAG
1 TGCTCTCTGATTATTAGCACGCCAG
* *
69970214 TGCTCTCT-AATATTTAGCACGTCAG
1 TGCTCTCTGATTA-TTAGCACGCCAG
69970239 TGCTCTCTGATTA
1 TGCTCTCTGATTA
69970252 GCACATTTGT
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
24 3 0.04
25 72 0.92
26 3 0.04
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (25 bp):
TGCTCTCTGATTATTAGCACGCCAG
Found at i:69970198 original size:50 final size:50
Alignment explanation
Indices: 69970139--69970251 Score: 183
Period size: 50 Copynumber: 2.3 Consensus size: 50
69970129 GACCTCAGCA
*
69970139 TGCTCTCTGATTATTAGCACGTCAGTGCTCTCTGAATA-TTAGCACGCCAG
1 TGCTCTCTGATTATTAGCACGCCAGTGCTCTCT-AATATTTAGCACGCCAG
* *
69970189 TGCTCTCTGATTATTAGCATGCCAGTGCTCTCTAATATTTAGCACGTCAG
1 TGCTCTCTGATTATTAGCACGCCAGTGCTCTCTAATATTTAGCACGCCAG
69970239 TGCTCTCTGATTA
1 TGCTCTCTGATTA
69970252 GCACATTTGT
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
49 4 0.07
50 55 0.93
ACGTcount: A:0.21, C:0.25, G:0.19, T:0.35
Consensus pattern (50 bp):
TGCTCTCTGATTATTAGCACGCCAGTGCTCTCTAATATTTAGCACGCCAG
Found at i:69970255 original size:22 final size:22
Alignment explanation
Indices: 69970151--69970288 Score: 116
Period size: 25 Copynumber: 5.9 Consensus size: 22
69970141 CTCTCTGATT
69970151 ATTAGCACGTCAGTGCTCTCTG
1 ATTAGCACGTCAGTGCTCTCTG
*
69970173 AATATTAGCACGCCAGTGCTCTCTG
1 ---ATTAGCACGTCAGTGCTCTCTG
* * *
69970198 ATTATTAGCATGCCAGTGCTCTCTAAT
1 ---ATTAGCACGTCAGTGCTCTCT--G
69970225 ATTTAGCACGTCAGTGCTCTCTG
1 A-TTAGCACGTCAGTGCTCTCTG
* **
69970248 ATTAGCACATTTGTGCTCTCTG
1 ATTAGCACGTCAGTGCTCTCTG
69970270 -TGTAGCACGTCAGTGCTCT
1 AT-TAGCACGTCAGTGCTCT
69970289 TTGTTCATTA
Statistics
Matches: 96, Mismatches: 13, Indels: 11
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.01
22 32 0.33
23 1 0.01
24 1 0.01
25 61 0.64
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (22 bp):
ATTAGCACGTCAGTGCTCTCTG
Found at i:69976416 original size:89 final size:87
Alignment explanation
Indices: 69976287--69976448 Score: 200
Period size: 89 Copynumber: 1.8 Consensus size: 87
69976277 ATTCGACGGA
* * *
69976287 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATG
*
69976352 ATTTGGCATCCTTGCGTTTACAAG
64 ATTTGACATCCTTGCGTTTACAAG
* ** * * *
69976376 GAGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGA
69976440 TTTGACATC
65 TTTGACATC
69976449 TCTGCACTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 24 0.39
88 1 0.02
89 36 0.58
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGACATCCTTGCGTTTACAAG
Found at i:69976552 original size:220 final size:220
Alignment explanation
Indices: 69976170--69976979 Score: 1332
Period size: 220 Copynumber: 3.7 Consensus size: 220
69976160 CAGGCTAAAG
* *
69976170 CATAGCAGATTTGACCTTCAGGTGTTTACGCTGAAGCGGATCCAAGATGATTTAACATCTCTGTA
1 CATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCTCTGTA
* *
69976235 TTGTCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 CTATCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
69976300 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
69976365 GCGTTTACAAGGAGCAGATCGAAGA
196 GCGTTTACAAGGAGCAGATCGAAGA
* * * * *
69976390 CATAGCAGATTTGGCTTTCACGTGTTTACGCTGAAGCAGATCTAAGATGATTTGACATCTCTGCA
1 CATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCTCTGTA
* * *
69976455 CTATCAGAGAACAAATCGAAGAAAAAGATTTGGTATCTCCCTATTCGACGGAGAGCAGATCGAAG
66 CTATCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
* * *
69976520 ACATAGCAGATCTAACCTTCGGATGATTTCACATCGAAGTAGATCTAAGATGATTTGGCAACCTT
131 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
* *
69976585 GCGTATATAAGGAGCAGATCGAAGA
196 GCGTTTACAAGGAGCAGATCGAAGA
* * * *
69976610 CATAGCAGATTTGGCTTTCACGTGTTTACACTGAAGTAGATCCAAGATGATTTAACATCTCTGTA
1 CATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCTCTGTA
* *
69976675 TTATCAGAGAACAAATCAAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
66 CTATCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
69976740 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
131 ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
*
69976805 ACGTTTACAAGGAGCAGATCGAAGA
196 GCGTTTACAAGGAGCAGATCGAAGA
* * **
69976830 CATAGCAGATTTGACCTTCAGGTGTTTACGCTGAAGCAGATCTAAGATGATTTGGCATCTCTGTA
1 CATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCTCTGTA
* * *
69976895 CTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAG
66 CTATCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
*
69976960 ACATAGCAGATCTGACCTTC
131 ACATAGCAGATCTAACCTTC
69976980 ATTGAAGCAG
Statistics
Matches: 543, Mismatches: 47, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
220 543 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (220 bp):
CATAGCAGATTTGACCTTCACGTGTTTACGCTGAAGCAGATCCAAGATGATTTAACATCTCTGTA
CTATCAGAGAACAAATCGAAGAAATAGATTTGGCATCTCCATATTCGACGGAGAGCAGATCGAAG
ACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGATTTGGCATCCTT
GCGTTTACAAGGAGCAGATCGAAGA
Found at i:69976856 original size:89 final size:87
Alignment explanation
Indices: 69976727--69976888 Score: 236
Period size: 89 Copynumber: 1.8 Consensus size: 87
69976717 ATTCGACGGA
* *
69976727 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTACAC-T-GAAGCAGATCCAAGATG
69976792 ATTTGGCATCCTTACGTTTACAAG
64 ATTTGGCATCCTTACGTTTACAAG
* * * *
69976816 GAGCAGATCGAAGACATAGCAGATTTGACCTTCAGG-TGTTTACGCTGAAGCAGATCTAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTC-GGATGTTTACACTGAAGCAGATCCAAGATGA
69976880 TTTGGCATC
65 TTTGGCATC
69976889 TCTGTACTGT
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
87 25 0.38
88 1 0.02
89 38 0.58
90 2 0.03
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (87 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTACGTTTACAAG
Found at i:69977029 original size:78 final size:78
Alignment explanation
Indices: 69976921--69977527 Score: 842
Period size: 78 Copynumber: 7.8 Consensus size: 78
69976911 CGAAGAAACA
* * * * *
69976921 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
69976986 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
69976999 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGAT-TGGACCTTTATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT-GACCTTCATTGA
69977063 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * **
69977077 GATTTGGCATCTCTATATTAGACGGGGAGTAGATCGAAGACACAACAGAT-TGGAAATTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT-GACCTTCATTGA
69977141 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
69977155 GATTTGGCATCTCCATATTCGACGGGGAGCAGATCGAAGACACAGCAGATTTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
69977220 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * * * *
69977233 GATTTGGAATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTTATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
69977298 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
69977311 GATTTGACATCTCTGTATTAGATGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
*
69977376 GCAGGTCCAAGAT
66 GCAGATCCAAGAT
* * * * * * *
69977389 GATTTGGCATCTCTGTATTAGACAGGGAACAGATCAAAGACATAACAGAT-TGAACCGTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTG-ACCTTCATTGA
69977453 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * *
69977467 GATTTGGCATATCTGTATTAGACGGGGAGCAGATCGGAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCAT
69977528 GTGTTTACAT
Statistics
Matches: 473, Mismatches: 52, Indels: 8
0.89 0.10 0.02
Matches are distributed among these distances:
77 3 0.01
78 467 0.99
79 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:69977620 original size:45 final size:46
Alignment explanation
Indices: 69977467--69977740 Score: 269
Period size: 45 Copynumber: 6.1 Consensus size: 46
69977457 GATCCAAGAT
* * * *
69977467 GATTTGGCATATCTGTATTAGACGGGGAGCAGATCGGAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGA-AGATAACA
* * * * * * * *
69977514 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATC-CAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCAGAAGATAACA
*
69977559 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG-AGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
* * *
69977604 GATTTGGCATCTCTGTATTAGACAGGGAGCAGAT-TGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
*
69977648 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATC-GAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
* * *
69977693 GATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCA-AAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
69977738 GAT
1 GAT
69977741 ATCACCTTCC
Statistics
Matches: 188, Mismatches: 28, Indels: 24
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 45 0.24
45 113 0.60
46 5 0.03
47 19 0.10
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (46 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAGAAGATAACA
Found at i:69977666 original size:89 final size:90
Alignment explanation
Indices: 69977467--69977740 Score: 292
Period size: 89 Copynumber: 3.0 Consensus size: 90
69977457 GATCCAAGAT
* * * * * * *
69977467 GATTTGGCATATCTGTATTAGACGGGGAGCAGATCGGAGACATAGCAGATCTGACCT-TCATGTG
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-GA-AGATAACAGATTTGGCATCTC-TGT-
* * *
69977531 TTTACATC-GA-AGCAGATCCAAGAT-GACA
62 ATTAGA-CGGAGAGCAGATCAAAGATAG-CA
69977559 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAGATTTGGCATCTCTGTATT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGA-AGATAACAGATTTGGCATCTCTGTATT
**
69977623 AGACAGG-GAGCAGATTGAAGA-AGCA
65 AGAC-GGAGAGCAGATCAAAGATAGCA
* * *
69977648 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
69977713 GACGGAGAGCAGATCAAAGATAGCA
66 GACGGAGAGCAGATCAAAGATAGCA
69977738 GAT
1 GAT
69977741 ATCACCTTCC
Statistics
Matches: 158, Mismatches: 16, Indels: 18
0.82 0.08 0.09
Matches are distributed among these distances:
88 3 0.02
89 81 0.51
90 39 0.25
91 2 0.01
92 33 0.21
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (90 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
GACGGAGAGCAGATCAAAGATAGCA
Found at i:69978111 original size:14 final size:15
Alignment explanation
Indices: 69978092--69978147 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
69978082 AATCTTCAAT
69978092 GATATG-CAATCTTA
1 GATATGACAATCTTA
69978106 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
69978123 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
69978141 GATATGA
1 GATATGA
69978148 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:69978136 original size:35 final size:37
Alignment explanation
Indices: 69978090--69978168 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
69978080 ATAATCTTCA
69978090 ATGATATGCAATCTTAGATATGATA-CAATCTTAGAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
69978126 ATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA-
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTAGAT
69978162 A-GATATG
1 ATGATATG
69978169 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTAGAT
Found at i:69978168 original size:17 final size:19
Alignment explanation
Indices: 69978090--69978161 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
69978080 ATAATCTTCA
69978090 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69978109 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69978126 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
69978144 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
69978162 AGATATGATT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:69978187 original size:22 final size:22
Alignment explanation
Indices: 69978090--69978184 Score: 79
Period size: 17 Copynumber: 4.8 Consensus size: 22
69978080 ATAATCTTCA
69978090 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69978109 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69978126 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
69978144 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
69978166 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
69978185 GATTTAATTT
Statistics
Matches: 67, Mismatches: 2, Indels: 10
0.85 0.03 0.13
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 15 0.22
22 8 0.12
23 12 0.18
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:69978475 original size:17 final size:17
Alignment explanation
Indices: 69978450--69978485 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
69978440 ATGTTTCCCG
*
69978450 AATTTTTTTATATATTTT
1 AATTTTTTAATA-ATTTT
69978468 AATTTTTTAATAATTTT
1 AATTTTTTAATAATTTT
69978485 A
1 A
69978486 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
AATTTTTTAATAATTTT
Found at i:69983025 original size:18 final size:20
Alignment explanation
Indices: 69982988--69983025 Score: 62
Period size: 18 Copynumber: 2.0 Consensus size: 20
69982978 ATTTTCATCC
69982988 CATTTAGAAATCTAAGTTGG
1 CATTTAGAAATCTAAGTTGG
69983008 CATTTA-AAATCT-AGTTGG
1 CATTTAGAAATCTAAGTTGG
69983026 ACTGTCACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 6 0.33
20 6 0.33
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (20 bp):
CATTTAGAAATCTAAGTTGG
Found at i:69984722 original size:9 final size:9
Alignment explanation
Indices: 69984694--69984724 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
69984684 CTTTTTTATT
69984694 TTATCATCA
1 TTATCATCA
*
69984703 TCATCATCA
1 TTATCATCA
69984712 TTATCATCA
1 TTATCATCA
69984721 TTAT
1 TTAT
69984725 TATTATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (9 bp):
TTATCATCA
Found at i:69991853 original size:9 final size:9
Alignment explanation
Indices: 69991839--69991871 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
69991829 GTTTAACGAA
69991839 TCGAGTTAT
1 TCGAGTTAT
*
69991848 TCGAGTTAA
1 TCGAGTTAT
69991857 TCGAGTTAT
1 TCGAGTTAT
69991866 TCGAGT
1 TCGAGT
69991872 CAACTCGAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:69991860 original size:18 final size:18
Alignment explanation
Indices: 69991837--69991871 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
69991827 GAGTTTAACG
69991837 AATCGAGTTATTCGAGTT
1 AATCGAGTTATTCGAGTT
69991855 AATCGAGTTATTCGAGT
1 AATCGAGTTATTCGAGT
69991872 CAACTCGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (18 bp):
AATCGAGTTATTCGAGTT
Found at i:69991968 original size:9 final size:9
Alignment explanation
Indices: 69991921--69991975 Score: 83
Period size: 9 Copynumber: 6.1 Consensus size: 9
69991911 TGAGTTTTCG
69991921 AATTCGAAT
1 AATTCGAAT
*
69991930 AACTCGAAT
1 AATTCGAAT
69991939 AATTCGAAT
1 AATTCGAAT
*
69991948 AACTCGAAT
1 AATTCGAAT
69991957 AATTCGAAT
1 AATTCGAAT
*
69991966 AATTCCAAT
1 AATTCGAAT
69991975 A
1 A
69991976 TTAAACTATA
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.29
Consensus pattern (9 bp):
AATTCGAAT
Found at i:69991975 original size:18 final size:18
Alignment explanation
Indices: 69991921--69991967 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
69991911 TGAGTTTTCG
69991921 AATTCGAATAACTCGAAT
1 AATTCGAATAACTCGAAT
69991939 AATTCGAATAACTCGAAT
1 AATTCGAATAACTCGAAT
69991957 AATTCGAATAA
1 AATTCGAATAA
69991968 TTCCAATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.28
Consensus pattern (18 bp):
AATTCGAATAACTCGAAT
Found at i:69993524 original size:57 final size:53
Alignment explanation
Indices: 69993378--69993860 Score: 265
Period size: 57 Copynumber: 8.6 Consensus size: 53
69993368 GAAAAAAAAA
* * * *
69993378 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTCTAGGAAAAAAAAATTCA-AAATTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGG---CAC-C-AGTACAAAAATA-TCAGAATTTT
** * * *
69993436 TTCGGGTGTTGGTCTTCTAATGGCCGGCACCAGTACAAAAATATGAGGAATTTTTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCAGTACAAAAATATCA-GAA--TTTT
* * * *
69993492 TTCTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAATAAAAAAATTTA-AAATTT
1 TT-TTGGTGCTGGCCTTCTAATGGCCGGCACCA--GT-ACAAAAATA-TCAGAATTTT
* * * * * ****
69993549 TTTAGGTGCTAGTCTTCTAATGGTCGGCACTAGTACAAAAATATCAGGAAAAAAAAAA
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCAGTACAAAAATATCA-G----AATTTT
* * * *
69993607 TTTT-ATGCTGGCCTTCTAATGGTCGGCACCACTGTAATAAAAAAAATTCA-AATTTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCA--GT-A-CAAAAATA-TCAGAATTTT
* * * * *
69993663 TTTGGGTGCTAGTCTTCTAATGGCTGGCACCAGTACAAAAATATTAGAAATTTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCAGTACAAAAATATCAG-AATTTT
* * * * * * *
69993717 TTTTTGTGCTGGCTTTCTAATGGTCGGTACCACTGTAGTAAAAAAAATTCA-AAATTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCA--GTA--CAAAAATA-TCAGAATTTT
* * *
69993774 TTTTGGTGCTGGTCTTTTAATGGCCGGCACCAGTACAAAAATATTAGGAATTTTT
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCAGTACAAAAATATCA-GAA-TTTT
*
69993829 TTTTGGTGCTGACCTTCTAATGGCCGGCACCA
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCA
69993861 AACCTTATAT
Statistics
Matches: 321, Mismatches: 73, Indels: 65
0.70 0.16 0.14
Matches are distributed among these distances:
52 8 0.02
53 28 0.09
54 38 0.12
55 40 0.12
56 38 0.12
57 107 0.33
58 35 0.11
59 8 0.02
60 8 0.02
61 8 0.02
62 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (53 bp):
TTTTGGTGCTGGCCTTCTAATGGCCGGCACCAGTACAAAAATATCAGAATTTT
Found at i:69993584 original size:113 final size:113
Alignment explanation
Indices: 69993378--69993860 Score: 627
Period size: 111 Copynumber: 4.3 Consensus size: 113
69993368 GAAAAAAAAA
* *
69993378 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTCTAGGA-AAAAAAAATTCAAAATTTTTCGGG
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTA--ATAAAAAAAATTCAAAATTTTTTGGG
* * * *
69993442 TGTTGGTCTTCTAATGGCCGGCACCAGTACAAAAATATGAGGAATTTTTT
64 TGCTAGTCTTCTAATGGCCGGCACCAGTACAAAAATATTAGGAAATTTTT
* *
69993492 TTCTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAAT-AAAAAAATTTAAAATTTTTTAGGT
1 TT-TTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAATAAAAAAAATTCAAAATTTTTTGGGT
* * * *****
69993556 GCTAGTCTTCTAATGGTCGGCACTAGTACAAAAATATCAGGAAAAAAAAAA
65 GCTAGTCTTCTAATGGCCGGCACCAGTACAAAAATATTAGG--AAATTTTT
* * *
69993607 TTTT-ATGCTGGCCTTCTAATGGTCGGCACCACTGTAATAAAAAAAATTCAAATTTTTTTGGGTG
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAATAAAAAAAATTCAAAATTTTTTGGGTG
*
69993671 CTAGTCTTCTAATGGCTGGCACCAGTACAAAAATATTA-GAAATTTTT
66 CTAGTCTTCTAATGGCCGGCACCAGTACAAAAATATTAGGAAATTTTT
* * * * *
69993718 TTTT-GTGCTGGCTTTCTAATGGTCGGTACCACTGTAGTAAAAAAAATTCAAAATTTTTTTGGTG
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAATAAAAAAAATTCAAAATTTTTTGGGTG
* *
69993782 CTGGTCTTTTAATGGCCGGCACCAGTACAAAAATATTAGG-AATTTTT
66 CTAGTCTTCTAATGGCCGGCACCAGTACAAAAATATTAGGAAATTTTT
*
69993829 TTTTGGTGCTGACCTTCTAATGGCCGGCACCA
1 TTTTGGTGCTGGCCTTCTAATGGCCGGCACCA
69993861 AACCTTATAT
Statistics
Matches: 320, Mismatches: 42, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
111 107 0.33
112 24 0.08
113 91 0.28
114 60 0.19
115 38 0.12
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (113 bp):
TTTTGGTGCTGGCCTTCTAATGGCCGGCACCACTGTAATAAAAAAAATTCAAAATTTTTTGGGTG
CTAGTCTTCTAATGGCCGGCACCAGTACAAAAATATTAGGAAATTTTT
Found at i:69994011 original size:28 final size:27
Alignment explanation
Indices: 69993971--69994038 Score: 88
Period size: 28 Copynumber: 2.6 Consensus size: 27
69993961 ATCATCAAAT
69993971 GAGTT-TTT-TAGTGGATTGTATA-AG
1 GAGTTATTTGTAGTGGATTGTATATAG
*
69993995 GAAGTTTGTTTGTAGTGGATTGTATATAG
1 G-AG-TTATTTGTAGTGGATTGTATATAG
69994024 GAGTTATTTGTAGTG
1 GAGTTATTTGTAGTG
69994039 TACAATCGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
24 1 0.03
25 2 0.05
26 2 0.05
27 14 0.37
28 16 0.42
29 3 0.08
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.46
Consensus pattern (27 bp):
GAGTTATTTGTAGTGGATTGTATATAG
Found at i:69998086 original size:28 final size:27
Alignment explanation
Indices: 69998052--69998110 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
69998042 TTTTTATTTC
* *
69998052 TTTCCAATTTAATTTGATTTCAATTTTA
1 TTTCCAATTTAATTTCATTT-AATTTAA
*
69998080 TTTCCAATTTCATTTCATTTAATTTAA
1 TTTCCAATTTAATTTCATTTAATTTAA
69998107 TTTC
1 TTTC
69998111 TATTTTTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 10 0.36
28 18 0.64
ACGTcount: A:0.27, C:0.14, G:0.02, T:0.58
Consensus pattern (27 bp):
TTTCCAATTTAATTTCATTTAATTTAA
Found at i:69998094 original size:23 final size:22
Alignment explanation
Indices: 69998062--69998104 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
69998052 TTTCCAATTT
* *
69998062 AATTTGATTTCAATTTTATTTCC
1 AATTTCATTTC-ATTTAATTTCC
69998085 AATTTCATTTCATTTAATTT
1 AATTTCATTTCATTTAATTT
69998105 AATTTCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.28, C:0.12, G:0.02, T:0.58
Consensus pattern (22 bp):
AATTTCATTTCATTTAATTTCC
Found at i:69998177 original size:32 final size:32
Alignment explanation
Indices: 69998135--69998206 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
69998125 CTTCATTTAA
69998135 ATTAAATTTTTTTAAATTTA-AGATTTATTTCC
1 ATTAAATTTTTTTAAATTTATA-ATTTATTTCC
* * * *
69998167 ATTAATTTTTTTTCATTTTATAATTTATTTTC
1 ATTAAATTTTTTTAAATTTATAATTTATTTCC
69998199 ATTAAATT
1 ATTAAATT
69998207 ATCTAAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
32 33 0.97
33 1 0.03
ACGTcount: A:0.32, C:0.06, G:0.01, T:0.61
Consensus pattern (32 bp):
ATTAAATTTTTTTAAATTTATAATTTATTTCC
Found at i:69998415 original size:16 final size:16
Alignment explanation
Indices: 69998396--69998444 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
69998386 CTTTCCATCC
69998396 AATTTAATTTC-ATGTT
1 AATTTAATTTCAAT-TT
*
69998412 AATTTTATTTCCAATTT
1 AATTTAATTT-CAATTT
*
69998429 AATTTAATTTCTATTT
1 AATTTAATTTCAATTT
69998445 TTACTTGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 14 0.50
17 12 0.43
18 2 0.07
ACGTcount: A:0.31, C:0.08, G:0.02, T:0.59
Consensus pattern (16 bp):
AATTTAATTTCAATTT
Found at i:69998496 original size:21 final size:21
Alignment explanation
Indices: 69998472--69998514 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
69998462 AAATCAAATG
*
69998472 TTTTGAAATTTAACATTTATT
1 TTTTGAAATTTAAAATTTATT
*
69998493 TTTTGCAATTTAAAATTTATT
1 TTTTGAAATTTAAAATTTATT
69998514 T
1 T
69998515 CTATTAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.58
Consensus pattern (21 bp):
TTTTGAAATTTAAAATTTATT
Found at i:69998644 original size:15 final size:17
Alignment explanation
Indices: 69998608--69998644 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
69998598 TATTTTATAT
69998608 ATATTTATTTCATTTTA
1 ATATTTATTTCATTTTA
69998625 A-ATTT-TTTCA-TTTA
1 ATATTTATTTCATTTTA
69998639 ATATTT
1 ATATTT
69998645 CCATTAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.26
15 9 0.47
16 4 0.21
17 1 0.05
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (17 bp):
ATATTTATTTCATTTTA
Found at i:69998900 original size:23 final size:23
Alignment explanation
Indices: 69998874--69998934 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
69998864 TCTCCAATTT
69998874 AATTTCATTTCAATTTTATTTCC
1 AATTTCATTTCAATTTTATTTCC
* * *
69998897 AATTTAATTTCTATTTTTATTTTC
1 AATTTCATTTC-AATTTTATTTCC
*
69998921 -ATTTCATTTAAATT
1 AATTTCATTTCAATT
69998935 AAATTTTTTG
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 3 0.10
23 18 0.58
24 10 0.32
ACGTcount: A:0.28, C:0.11, G:0.00, T:0.61
Consensus pattern (23 bp):
AATTTCATTTCAATTTTATTTCC
Found at i:69998952 original size:21 final size:20
Alignment explanation
Indices: 69998926--69998974 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
69998916 TTTTCATTTC
69998926 ATTTAAATTAAATTTTTTGAA
1 ATTTAAATT-AATTTTTTGAA
* *
69998947 ATTTAACATTTATTTTTTGCA
1 ATTTAA-ATTAATTTTTTGAA
69998968 ATTTAAA
1 ATTTAAA
69998975 ATGTATTTCC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.84
22 3 0.12
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (20 bp):
ATTTAAATTAATTTTTTGAA
Found at i:69998981 original size:21 final size:21
Alignment explanation
Indices: 69998937--69998982 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
69998927 TTTAAATTAA
* *
69998937 ATTTTTTGAAATTTAACATTT
1 ATTTTTTGAAATTTAAAATGT
*
69998958 ATTTTTTGCAATTTAAAATGT
1 ATTTTTTGAAATTTAAAATGT
69998979 ATTT
1 ATTT
69998983 CCATTAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.57
Consensus pattern (21 bp):
ATTTTTTGAAATTTAAAATGT
Found at i:69999010 original size:468 final size:472
Alignment explanation
Indices: 69998177--69999133 Score: 1509
Period size: 468 Copynumber: 2.0 Consensus size: 472
69998167 ATTAATTTTT
69998177 TTTCATTTTATAATTTATTTTCATTAAATTATCTAAAATTCAAGTTTTATTTTTTTATTTAAATT
1 TTTCATTTTATAATTTATTTTCATTAAATTATCTAAAATTCAAG---T-TTTTTTTATTTAAATT
*
69998242 TCAATTGAATAGAACAAAAAAAAAGCATAGTGTGGCTGGCCATTGATTTGGCCATTAAAATAAAT
62 TCAATTGAATAGAACAAAAAAAAAGCATAGTGTGGCTGGCCATTGATTCGGCCATTAAAATAAAT
* * *
69998307 TTGGCAGGCCAGGCCTAGGCCTAACACGCAGACCTGTTTAAGACATTACTTCACATTTTTTCACC
127 TTGGCAGGCCAGGCCTAGGCCTAACACACAGACCTATTTAAGAAATTACTTCACATTTTTTCACC
*
69998372 TTTTTTTTTCATTTCTTTCCATCCAATTTAATTTCATGTTAATTTTATTTCCAATTTAATTTAAT
192 TTTTTTTTTCATTTCTCTCCATCCAATTTAATTTCATGTTAATTTTATTTCC----TAATTTAAT
69998437 TTCTATTTTTACTTGAATTTCATTTAAATCAAATGTTTTGAAATTTAACATTTATTTTTTGCAAT
253 TTCTATTTTTACTTGAATTTCATTTAAATCAAATGTTTTGAAATTTAACATTTATTTTTTGCAAT
* * *
69998502 TTAAAATTTATTTCTATTAAAATTATCTATAATTTAAGTTTTTTT-ATTTACTATTTCATTCTTT
318 TTAAAATGTATTTCCATTAAAATTATCTATAATTTAAGTTTTTTTAATTTACTATTTCATTATTT
*
69998566 TTTTGTGGTTCATTTAATTTGATCTATTATTTTATTTTATATATATTTATTTCATTTTAAATTTT
383 TTTT-TGGTTCATTTAATTTGATCTATTATTTTAGTTTATATATATTTATTTCATTTTAAATTTT
*
69998631 TTCATTTAATATTTCCATTAAAAAAA
447 TTCATTTAACATTTCCATTAAAAAAA
* *
69998657 TTTCATTTTAT-ATTTAATTTTCATTAAAATTATCTAGAATTTAAG-TTTTTTTATTTAAATTTC
1 TTTCATTTTATAATTT-ATTTTCATT-AAATTATCTAAAATTCAAGTTTTTTTTATTTAAATTTC
* *
69998720 AATTGAATAGAA-AAAAAAAAAGCATAGTGTGGCTGGCCATTGATTCGGCTATTAAAATTAATTT
64 AATTGAATAGAACAAAAAAAAAGCATAGTGTGGCTGGCCATTGATTCGGCCATTAAAATAAATTT
* * *
69998784 GGCAAGG-CAGGCCTAGGCCTAACACACAGGCCTATTTGAGAAATTACTTCGCATTTTTTCACCT
129 GGC-AGGCCAGGCCTAGGCCTAACACACAGACCTATTTAAGAAATTACTTCACATTTTTTCACCT
69998848 TTTTTTTTCATTTCTCT-C-TCCAATTTAATTTCAT-TTCAATTTTATTTCC-AATTTAATTTCT
193 TTTTTTTTCATTTCTCTCCATCCAATTTAATTTCATGTT-AATTTTATTTCCTAATTTAATTTCT
* ** * *
69998909 ATTTTTATTTTCATTTCATTTAAATTAAATTTTTTGAAATTTAACATTTATTTTTTGCAATTTAA
257 ATTTTTACTTGAATTTCATTTAAATCAAATGTTTTGAAATTTAACATTTATTTTTTGCAATTTAA
69998974 AATGTATTTCCATTAAAATTATCTATAATTTAAGTTTTTTTAATTTACTATTTCATTATTTTTTT
322 AATGTATTTCCATTAAAATTATCTATAATTTAAGTTTTTTTAATTTACTATTTCATTATTTTTTT
* *
69999039 TGGTTCATTTAATTTTATCTATTATTTTAGTTTATATATATTTATTTCATTTTAATTTTTTTCAT
387 TGGTTCATTTAATTTGATCTATTATTTTAGTTTATATATATTTATTTCATTTTAAATTTTTTCAT
69999104 TTAACATTTCCATTAAAAAAA
452 TTAACATTTCCATTAAAAAAA
*
69999125 ATTCATTTT
1 TTTCATTTT
69999134 CATTAAAATT
Statistics
Matches: 447, Mismatches: 25, Indels: 22
0.90 0.05 0.04
Matches are distributed among these distances:
468 201 0.45
469 22 0.05
472 2 0.00
473 28 0.06
474 1 0.00
475 119 0.27
476 33 0.07
479 4 0.01
480 20 0.04
481 17 0.04
ACGTcount: A:0.31, C:0.12, G:0.07, T:0.50
Consensus pattern (472 bp):
TTTCATTTTATAATTTATTTTCATTAAATTATCTAAAATTCAAGTTTTTTTTATTTAAATTTCAA
TTGAATAGAACAAAAAAAAAGCATAGTGTGGCTGGCCATTGATTCGGCCATTAAAATAAATTTGG
CAGGCCAGGCCTAGGCCTAACACACAGACCTATTTAAGAAATTACTTCACATTTTTTCACCTTTT
TTTTTCATTTCTCTCCATCCAATTTAATTTCATGTTAATTTTATTTCCTAATTTAATTTCTATTT
TTACTTGAATTTCATTTAAATCAAATGTTTTGAAATTTAACATTTATTTTTTGCAATTTAAAATG
TATTTCCATTAAAATTATCTATAATTTAAGTTTTTTTAATTTACTATTTCATTATTTTTTTTGGT
TCATTTAATTTGATCTATTATTTTAGTTTATATATATTTATTTCATTTTAAATTTTTTCATTTAA
CATTTCCATTAAAAAAA
Found at i:69999219 original size:22 final size:23
Alignment explanation
Indices: 69999168--69999219 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 23
69999158 ATTATTTATA
*
69999168 TTACA-TTTCAATTTCATTACCC
1 TTACATTTTCAATTTCATTACAC
* * *
69999190 TTATATTTTCAA-TTCATTTCAT
1 TTACATTTTCAATTTCATTACAC
69999212 TTACATTT
1 TTACATTT
69999220 CTATTTTTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
22 18 0.75
23 6 0.25
ACGTcount: A:0.27, C:0.19, G:0.00, T:0.54
Consensus pattern (23 bp):
TTACATTTTCAATTTCATTACAC
Done.