Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 221 of 259
Found at i:69999245 original size:21 final size:22
Alignment explanation
Indices: 69999221--69999270 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
69999211 TTTACATTTC
*
69999221 TATTTTTTAA-AATTTCCCTTA
1 TATTTTTCAATAATTTCCCTTA
*
69999242 TA-TTTTCAATTATTTCCCTTA
1 TATTTTTCAATAATTTCCCTTA
*
69999263 TATCTTTC
1 TATTTTTC
69999271 CATTTAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 6 0.25
21 14 0.58
22 4 0.17
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (22 bp):
TATTTTTCAATAATTTCCCTTA
Found at i:70010298 original size:15 final size:15
Alignment explanation
Indices: 70010278--70010307 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70010268 ATAATCTTAT
70010278 TTAATAATAAATTTA
1 TTAATAATAAATTTA
*
70010293 TTAATAATTAATTTA
1 TTAATAATAAATTTA
70010308 ATTTTTGTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAATAATAAATTTA
Found at i:70010453 original size:17 final size:17
Alignment explanation
Indices: 70010419--70010453 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
70010409 CTTCACTCAT
70010419 ATTTAATTTTAATTTTA
1 ATTTAATTTTAATTTTA
70010436 ATTT-ATTTTAATTATTA
1 ATTTAATTTTAATT-TTA
70010453 A
1 A
70010454 ATACGTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
ATTTAATTTTAATTTTA
Found at i:70016474 original size:60 final size:60
Alignment explanation
Indices: 70016401--70016515 Score: 185
Period size: 60 Copynumber: 1.9 Consensus size: 60
70016391 CAAAAATATC
* *
70016401 TTTAAAGATAACATATAATATATAAGGAAAAGTATTATTTGAAATTAATTAATAAATGTG
1 TTTAAAGATAACATACAATAAATAAGGAAAAGTATTATTTGAAATTAATTAATAAATGTG
* * *
70016461 TTTAAAGATAACATACAATAAATAATGAAAAGTATTGTTTGGAATTAATTAATAA
1 TTTAAAGATAACATACAATAAATAAGGAAAAGTATTATTTGAAATTAATTAATAA
70016516 TAAAACATGA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.50, C:0.03, G:0.11, T:0.36
Consensus pattern (60 bp):
TTTAAAGATAACATACAATAAATAAGGAAAAGTATTATTTGAAATTAATTAATAAATGTG
Found at i:70017750 original size:18 final size:18
Alignment explanation
Indices: 70017705--70017768 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
70017695 ATGAAATCAG
70017705 TTATATGTTGTTGTTC-T
1 TTATATGTTGTTGTTCAT
*
70017722 TTAGGGA-GTTGTTGTTCAT
1 TTA--TATGTTGTTGTTCAT
70017741 TTATATGTTGTTGTTCAT
1 TTATATGTTGTTGTTCAT
*
70017759 TTATAAGTTG
1 TTATATGTTG
70017769 AAGTTTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 31 0.77
19 5 0.12
ACGTcount: A:0.17, C:0.05, G:0.22, T:0.56
Consensus pattern (18 bp):
TTATATGTTGTTGTTCAT
Found at i:70018878 original size:38 final size:38
Alignment explanation
Indices: 70018819--70018924 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 38
70018809 CATTTTTAAG
*
70018819 AATAT-AAAGAATATATATAAGTATGTATATG-ATGTA-A
1 AATATGAAA-AATATATATAAGTATGTATAAGAAT-TAGA
* *
70018856 AATATGCATAAATATATGTAAGTA--TATAAGAATTATGA
1 AATATG-AAAAATATATATAAGTATGTATAAGAATTA-GA
*
70018894 AATATGAAAAATATATTTAAGTATGTATAAG
1 AATATGAAAAATATATATAAGTATGTATAAG
70018925 TACGTATATC
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
36 7 0.12
37 22 0.39
38 20 0.35
39 8 0.14
ACGTcount: A:0.51, C:0.01, G:0.13, T:0.35
Consensus pattern (38 bp):
AATATGAAAAATATATATAAGTATGTATAAGAATTAGA
Found at i:70020778 original size:82 final size:82
Alignment explanation
Indices: 70020660--70021077 Score: 694
Period size: 82 Copynumber: 5.1 Consensus size: 82
70020650 CATGGGGATG
* * ** * *
70020660 AGATTTGTGTTTTTAGTCTGCTCCACTACTATTTAGGGAGATAAGACTGGATGTGATCTGCTCCA
1 AGATCTGTGGTTTT-GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCA
*
70020725 CTACTACTTAGGGAGATA
65 CTATTACTTAGGGAGATA
* *
70020743 AGATCTGTGGTTTCGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
*
70020808 TATTGCTTAGGGAGATA
66 TATTACTTAGGGAGATA
* * *
70020825 AGATCTATGGTTTTGTCTGCTCCACTACTGTTTAGGGAGATAAGACTTGATACGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
*
70020890 TATTGCTTAGGGAGATA
66 TATTACTTAGGGAGATA
70020907 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
70020972 TATTACTTAGGGAGATA
66 TATTACTTAGGGAGATA
70020989 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
70021054 TATTACTTAGGGAGATA
66 TATTACTTAGGGAGATA
70021071 AGA-CTGT
1 AGATCTGT
70021078 AATCTTCAAT
Statistics
Matches: 316, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
81 4 0.01
82 301 0.95
83 11 0.03
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (82 bp):
AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
TATTACTTAGGGAGATA
Found at i:70021234 original size:46 final size:46
Alignment explanation
Indices: 70021184--70021518 Score: 189
Period size: 46 Copynumber: 7.4 Consensus size: 46
70021174 ATCTGCTTCT
*
70021184 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGCAAGATCTGCAATCTTCAATCTATTCCA
* ** * *
70021230 CTGCCAAATACAGGGA-G-ATAGAAT-TATC-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGCA-AG-ATCT-GCAATCTTCAATCTATTCCA
* * * * * ** * *
70021275 CTG--TAGTCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTT-CG
1 CTGCCAAAT-ACAGGGAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
* *
70021320 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCTA
1 CTGCCAAATACAGGGAGGCAAGATCTGCAATCTTCAATCTATTCCA
* * * *
70021366 CCGCCAAATACAGGGA-G-ATAGAAT-T--ATTGGCTTCAATGTACTCCA
1 CTGCCAAATACAGGGAGGCA-AG-ATCTGCAAT--CTTCAATCTATTCCA
* * * * * * *
70021411 CTG--TAGTCACAGGGAGGTAAAATCTGTC-ATCTTCGATCTGCTT-CT
1 CTGCCAAAT-ACAGGGAGGCAAGATCTG-CAATCTTCAATCT-ATTCCA
*
70021456 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGGAGGCAAGATCTGCAATCTTCAATCTATTCCA
70021502 CTGCCAAATACAGGGAG
1 CTGCCAAATACAGGGAG
70021519 ATAGAGTTAT
Statistics
Matches: 207, Mismatches: 54, Indels: 56
0.65 0.17 0.18
Matches are distributed among these distances:
43 6 0.03
44 21 0.10
45 70 0.34
46 105 0.51
47 5 0.02
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGGAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:70021354 original size:136 final size:136
Alignment explanation
Indices: 70021070--70021585 Score: 894
Period size: 136 Copynumber: 3.8 Consensus size: 136
70021060 TTAGGGAGAT
* * *
70021070 AAGA-CTGTAATCTTCAATCTATTCCACTGCCAAATATAGGGAGATAGAGTTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATG
*
70021134 TACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCTCTGCCAAATACAG
66 TACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCTCTGCCAAATACAG
70021197 GAAGGC
131 GAAGGC
70021203 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATG
* *
70021268 TACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTTGATCTGCTTCGCTGCCAAATACAG
66 TACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCTCTGCCAAATACAG
70021333 GAAGGC
131 GAAGGC
* * *
70021339 AAGATCTGCAATCTTCAATCTATTCTACCGCCAAATACAGGGAGATAGAATTATTGGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATG
*
70021404 TACTCCACTGTAGTCACAGGGAGGTAAAATCTGTCATCTTCGATCTGCTTCTCTGCCAAATACAG
66 TACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCTCTGCCAAATACAG
70021469 GAAGGC
131 GAAGGC
* *
70021475 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAGTTATCAGCTTCAATG
1 AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATG
*
70021540 TACTCCACTGTAGTCATAGGGAGGTAAAATCTGCCATCTTCGATCT
66 TACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCT
70021586 ACTCCACGCC
Statistics
Matches: 363, Mismatches: 17, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
133 4 0.01
134 71 0.20
136 288 0.79
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (136 bp):
AAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGATAGAATTATCGGCTTCAATG
TACTCCACTGTAGTCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCTCTGCCAAATACAG
GAAGGC
Found at i:70021624 original size:44 final size:45
Alignment explanation
Indices: 70021576--70021971 Score: 288
Period size: 44 Copynumber: 9.0 Consensus size: 45
70021566 AAATCTGCCA
* * *
70021576 TCTTCGATCTAC-TCCACGCCAATACATGAAGATAAGATCTGCTT
1 TCTTCGATCTACTTCCACGCCAATATAGGAAGACAAGATCTGCTT
* * *
70021620 TCTTCGATCTACTTCGC-CACCAGTATAGGAAGACAAGATCTGC-A
1 TCTTCGATCTACTTC-CACGCCAATATAGGAAGACAAGATCTGCTT
* * **
70021664 TCGTCGATCCACTTCCTA--CCAATATAGGAAGACCGGA-CATG-TT
1 TCTTCGATCTACTTCC-ACGCCAATATAGGAAGACAAGATC-TGCTT
* * * *
70021707 ATCTTTGATCTACTT-CACGCCAATACATGAAGACAAGATCTACTT
1 -TCTTCGATCTACTTCCACGCCAATATAGGAAGACAAGATCTGCTT
* * *
70021752 TCTTCGATCTACTTCCTA--CTAATATGGGAAGACAAGATCTGC-A
1 TCTTCGATCTACTTCC-ACGCCAATATAGGAAGACAAGATCTGCTT
* * * * *
70021795 TCATCGATCCACTTCCTA--CCAATATAGGAAGATAGGACCTG-TT
1 TCTTCGATCTACTTCC-ACGCCAATATAGGAAGACAAGATCTGCTT
* * *
70021838 ATCTTCGATCTACTT-CACGCCAATACATGAAGATAAGATCTGCTT
1 -TCTTCGATCTACTTCCACGCCAATATAGGAAGACAAGATCTGCTT
* * * *
70021883 TCTTCGATCTACTTCGC-CACCAGTATGGGAAGACAAGATCTGC-A
1 TCTTCGATCTACTTC-CACGCCAATATAGGAAGACAAGATCTGCTT
* * * * *
70021927 TCGTCGATCCACTT-CACGCCAATACATGAAGATAAGATCTGCTT
1 TCTTCGATCTACTTCCACGCCAATATAGGAAGACAAGATCTGCTT
70021971 T
1 T
70021972 AATGACTTCA
Statistics
Matches: 273, Mismatches: 57, Indels: 44
0.73 0.15 0.12
Matches are distributed among these distances:
42 4 0.01
43 75 0.27
44 142 0.52
45 49 0.18
46 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
TCTTCGATCTACTTCCACGCCAATATAGGAAGACAAGATCTGCTT
Found at i:70021841 original size:131 final size:132
Alignment explanation
Indices: 70021575--70021941 Score: 619
Period size: 131 Copynumber: 2.8 Consensus size: 132
70021565 AAAATCTGCC
*
70021575 ATCTTCGATCTACTCCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* *
70021640 CAGTATAGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACCGGACATG
66 CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGACATG
70021705 TT
131 TT
* * * *
70021707 ATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTC-CTAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCAC
* * * * *
70021771 TAATATGGGAAGACAAGATCTGCATCATCGATCCACTTCCTACCAATATAGGAAGATAGGACCTG
66 CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGACATG
70021836 TT
131 TT
70021838 ATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCAC
1 ATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCAC
70021903 CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTC
66 CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTC
70021942 ACGCCAATAC
Statistics
Matches: 215, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 120 0.56
132 95 0.44
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.28
Consensus pattern (132 bp):
ATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACTTCGCCAC
CAGTATGGGAAGACAAGATCTGCATCGTCGATCCACTTCCTACCAATATAGGAAGACAGGACATG
TT
Found at i:70032006 original size:16 final size:16
Alignment explanation
Indices: 70031987--70032030 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 16
70031977 TAAAAATAAT
70031987 TTAAAATATAAATTTA
1 TTAAAATATAAATTTA
70032003 TTAATATATATAAATTTA
1 TTAA-A-ATATAAATTTA
*
70032021 TTAATATATA
1 TTAAAATATA
70032031 TGTAAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 9 0.36
17 1 0.04
18 15 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAATATAAATTTA
Found at i:70032013 original size:18 final size:18
Alignment explanation
Indices: 70031992--70032031 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
70031982 ATAATTTAAA
70031992 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
70032010 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
70032028 ATAT
1 ATAT
70032032 GTAAAAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:70032186 original size:28 final size:28
Alignment explanation
Indices: 70032122--70032187 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
70032112 CCAGAAAAGT
* * *
70032122 AAATCATTTTTCAGAAATCATTTTCTAA
1 AAATCATTTTCCAAAAATCATTTTCGAA
*
70032150 AAATCATTTTCCAAAAATCATTTTCCGGA
1 AAATCATTTTCCAAAAATCATTTT-CGAA
70032179 AAAT-ATTTT
1 AAATCATTTT
70032188 ACCTGCAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 27 0.82
29 6 0.18
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (28 bp):
AAATCATTTTCCAAAAATCATTTTCGAA
Found at i:70032187 original size:14 final size:14
Alignment explanation
Indices: 70032122--70032175 Score: 81
Period size: 14 Copynumber: 3.9 Consensus size: 14
70032112 CCAGAAAAGT
* *
70032122 AAATCATTTTTCAG
1 AAATCATTTTCCAA
*
70032136 AAATCATTTTCTAA
1 AAATCATTTTCCAA
70032150 AAATCATTTTCCAA
1 AAATCATTTTCCAA
70032164 AAATCATTTTCC
1 AAATCATTTTCC
70032176 GGAAAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:70033989 original size:27 final size:27
Alignment explanation
Indices: 70033912--70033990 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 27
70033902 GTGAAATACT
* *
70033912 TATTATTATTTTATATA-TCCCTCATCA
1 TATTA-TATTTTATATATTTCATCATCA
*
70033939 TATTATATTCTATTTATATATTCATCA-CA
1 TATTATATT-T-TATATAT-TTCATCATCA
70033968 TATTATATTTTACTATATTTCAT
1 TATTATATTTTA-TATATTTCAT
70033991 GATATTTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 4 0.09
27 12 0.28
28 11 0.26
29 11 0.26
30 5 0.12
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (27 bp):
TATTATATTTTATATATTTCATCATCA
Found at i:70050539 original size:31 final size:31
Alignment explanation
Indices: 70050487--70050608 Score: 138
Period size: 31 Copynumber: 3.9 Consensus size: 31
70050477 AAAGGACAAA
* * * *
70050487 TGATAAGTCAAAAGTGGTAGCTTCGGTTACC
1 TGATCAGTGAAAAGTGATAGCTTCGGCTACC
70050518 TGATCAGTGAAAAGTGATAGCTTCGGCTACC
1 TGATCAGTGAAAAGTGATAGCTTCGGCTACC
* *
70050549 TGATCTGTGAAAAAT-AGTAGCTTCGGCTACC
1 TGATCAGTGAAAAGTGA-TAGCTTCGGCTACC
* * * *
70050580 TGATCAATGAATAGTGGTAGCTTCAGCTA
1 TGATCAGTGAAAAGTGATAGCTTCGGCTA
70050609 AAAGTGACAA
Statistics
Matches: 77, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
30 1 0.01
31 76 0.99
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
TGATCAGTGAAAAGTGATAGCTTCGGCTACC
Found at i:70050843 original size:10 final size:10
Alignment explanation
Indices: 70050828--70050855 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
70050818 ATGCTATGGC
70050828 ATCAGTGATT
1 ATCAGTGATT
70050838 ATCAGTGATT
1 ATCAGTGATT
70050848 ATCAGTGA
1 ATCAGTGA
70050856 AATTTAGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.36
Consensus pattern (10 bp):
ATCAGTGATT
Found at i:70052845 original size:21 final size:22
Alignment explanation
Indices: 70052811--70052855 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
70052801 AAAAGAATAT
**
70052811 AATAAATTGTGAAA-AATATGA
1 AATAAATTAAGAAATAATATGA
*
70052832 AATAAATTAAGAAATAGTATGA
1 AATAAATTAAGAAATAATATGA
70052854 AA
1 AA
70052856 ATAATATGGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.60, C:0.00, G:0.13, T:0.27
Consensus pattern (22 bp):
AATAAATTAAGAAATAATATGA
Found at i:70053159 original size:94 final size:94
Alignment explanation
Indices: 70053051--70053253 Score: 273
Period size: 94 Copynumber: 2.2 Consensus size: 94
70053041 AATAAGATCA
* * * * * *
70053051 GTTGTGATCGTAAATCATCTAATTG-TTAGGAGTAGCGATACTAAATCAACTAACTCATAGAAGA
1 GTTGTGATCGTAAATCAACGAACTGTTTA-AAGTAGCGATAATAAATCAACTAACTCATAAAAGA
* *
70053115 TTGTTCATGATCATAAATCAGTGAACTTAG
65 TTGTTCATGATCATAAACCAATGAACTTAG
* * * *
70053145 GTTGTCATCGTAAATCAACGAACTGTTTAAAGTAGTGATAATAAATCAGCTAATTCATAAAAGAT
1 GTTGTGATCGTAAATCAACGAACTGTTTAAAGTAGCGATAATAAATCAACTAACTCATAAAAGAT
70053210 TGTTCATGATCATAAACCAATGAACTTAG
66 TGTTCATGATCATAAACCAATGAACTTAG
*
70053239 GTTATGATCGTAAAT
1 GTTGTGATCGTAAAT
70053254 TAGTGAGTCT
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
94 91 0.97
95 3 0.03
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.32
Consensus pattern (94 bp):
GTTGTGATCGTAAATCAACGAACTGTTTAAAGTAGCGATAATAAATCAACTAACTCATAAAAGAT
TGTTCATGATCATAAACCAATGAACTTAG
Found at i:70063646 original size:19 final size:19
Alignment explanation
Indices: 70063610--70063665 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
70063600 GGCCAACAGT
*
70063610 GAAAAAAAACACTAAAAAC
1 GAAAAAAAAAACTAAAAAC
*
70063629 -AAAAAAAAAAGCTGAAAAC
1 GAAAAAAAAAA-CTAAAAAC
70063648 GAAAAATAAAAA-TAAAAA
1 GAAAAA-AAAAACTAAAAA
70063666 AAAGGTCATG
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
18 9 0.29
19 12 0.39
20 5 0.16
21 5 0.16
ACGTcount: A:0.77, C:0.09, G:0.07, T:0.07
Consensus pattern (19 bp):
GAAAAAAAAAACTAAAAAC
Found at i:70063646 original size:20 final size:18
Alignment explanation
Indices: 70063610--70063664 Score: 51
Period size: 18 Copynumber: 2.9 Consensus size: 18
70063600 GGCCAACAGT
*
70063610 GAAAAAAAACACTAAAAAC
1 GAAAAAAAAAACT-AAAAC
70063629 -AAAAAAAAAAGCTGAAAAC
1 GAAAAAAAAAA-CT-AAAAC
70063648 GAAAAATAAAAA-TAAAA
1 GAAAAA-AAAAACTAAAA
70063665 AAAAGGTCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
18 13 0.42
19 8 0.26
20 5 0.16
21 5 0.16
ACGTcount: A:0.76, C:0.09, G:0.07, T:0.07
Consensus pattern (18 bp):
GAAAAAAAAAACTAAAAC
Found at i:70063819 original size:9 final size:9
Alignment explanation
Indices: 70063805--70063891 Score: 53
Period size: 9 Copynumber: 10.3 Consensus size: 9
70063795 TTCGGGAGCA
70063805 AAGAAGGAG
1 AAGAAGGAG
70063814 AAG-A--AG
1 AAGAAGGAG
*
70063820 AA-AAGGAA
1 AAGAAGGAG
70063828 AAGAAGGAG
1 AAGAAGGAG
*
70063837 AATAAGGA-
1 AAGAAGGAG
70063845 AAGAA-GAG
1 AAGAAGGAG
*
70063853 AAGAAGAAG
1 AAGAAGGAG
**
70063862 AAAGAAAAAG
1 -AAGAAGGAG
*
70063872 AAG-GGGAG
1 AAGAAGGAG
*
70063880 GAGAAGGAG
1 AAGAAGGAG
70063889 AAG
1 AAG
70063892 GAGGCCGGCA
Statistics
Matches: 58, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
6 5 0.09
7 2 0.03
8 17 0.29
9 26 0.45
10 8 0.14
ACGTcount: A:0.61, C:0.00, G:0.38, T:0.01
Consensus pattern (9 bp):
AAGAAGGAG
Found at i:70063830 original size:23 final size:22
Alignment explanation
Indices: 70063804--70063869 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
70063794 TTTCGGGAGC
70063804 AAAGAAGGAGAAGAAGAAAAGGA
1 AAAGAAGGAGAAGAAGAAAA-GA
* *
70063827 AAAGAAGGAGAATAAGGAAAGA
1 AAAGAAGGAGAAGAAGAAAAGA
* *
70063849 AGAGAAGAAGAAGAAAGAAAA
1 AAAGAAGGAGAAG-AAGAAAA
70063870 AGAAGGGGAG
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
22 12 0.33
23 24 0.67
ACGTcount: A:0.67, C:0.00, G:0.32, T:0.02
Consensus pattern (22 bp):
AAAGAAGGAGAAGAAGAAAAGA
Found at i:70064362 original size:15 final size:15
Alignment explanation
Indices: 70064342--70064393 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
70064332 AAAAATAGTA
70064342 TAAAAAATAAAATAC
1 TAAAAAATAAAATAC
* * *
70064357 TAAAAAATATATTAA
1 TAAAAAATAAAATAC
70064372 TGAAAAAATAAAATAC
1 T-AAAAAATAAAATAC
70064388 -AAAAAA
1 TAAAAAA
70064394 AAACTTTTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 6 0.20
15 13 0.43
16 11 0.37
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (15 bp):
TAAAAAATAAAATAC
Found at i:70065228 original size:13 final size:13
Alignment explanation
Indices: 70065172--70065231 Score: 52
Period size: 13 Copynumber: 4.5 Consensus size: 13
70065162 ATTTCTTGCT
70065172 AAAATAATATA--
1 AAAATAATATACG
*
70065183 AAAATAAAATACG
1 AAAATAATATACG
**
70065196 AAAATAATATATTTTA
1 AAAATAATATA---CG
70065212 AAAATAATATACG
1 AAAATAATATACG
70065225 AAAATAA
1 AAAATAA
70065232 AAAATACGAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
11 10 0.26
13 17 0.45
16 11 0.29
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.27
Consensus pattern (13 bp):
AAAATAATATACG
Found at i:70065484 original size:12 final size:13
Alignment explanation
Indices: 70065469--70065504 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
70065459 ATTTTTTGCT
70065469 AAAATAATATA-A
1 AAAATAATATACA
*
70065481 AAAATAAAATACA
1 AAAATAATATACA
70065494 AAAATAATATA
1 AAAATAATATA
70065505 TTTTAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (13 bp):
AAAATAATATACA
Found at i:70065585 original size:150 final size:149
Alignment explanation
Indices: 70064426--70066431 Score: 2861
Period size: 151 Copynumber: 13.5 Consensus size: 149
70064416 TGCTGACGAG
** * * *
70064426 TTTTTTGCTAAAATAATATAAAAAATAAAATATAAAAATAGTATATTTTAAAAAATAAAATCCGA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
* * *
70064491 AAATAAAAAAATACGAACAATGTGCCAAAGTCAGGGTTATTTATTAAATTAATAT-AAAAA-ACT
66 AAAT-AAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACT
70064554 TAAATAATACATTTGAAACA
130 TAAATAATACATTTGAAACA
* *
70064574 TTTTTTGCTAAAATCATAT---TAA-AAAATACGAAAATAATATATTTT-AAAAATAATATACG-
1 TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
* *
70064633 -AA-AAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAA-AAATAT-AAAAACACTT
66 AAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTT
*
70064694 ATATAATACATTTGAAACA
131 AAATAATACATTTGAAACA
* * * * *
70064713 TTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACA
1 TTTTTTGCTAAAATAATATAAA-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
* **
70064778 AAAATAAAAAAAAATACGAAGAAAGTGCCAAAATCAGTATTATTTATTAAATTAATATAAAAAAC
65 AAAAT---AAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAAC
*
70064843 ACTTAAGTAATACATTTGAAACA
127 ACTTAAATAATACATTTGAAACA
* *
70064866 TTTCTTGCTAAAATAATAT-AAAAATAAAATACAAAAATAATATATTTT-AAAAATAATATACGA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
* * *
70064929 AAATAAAAAATACGAATAAAGTGCTAAAATCTGGGTTATTTATTAAA-AAATATAAAAAACACTT
66 AAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTT
*
70064993 AAATAATGCATTTGAAACA
131 AAATAATACATTTGAAACA
* * * * *
70065012 TTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACA
1 TTTTTTGCTAAAATAATATAAA-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
* **
70065077 AAAATAAAAAAATACGAAGAAAGTGCCAAAATCAGTATTATTTATTAAATTAATATAAAAAACAC
65 AAAAT-AAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACAC
*
70065142 TTAAGTAATACATTTGAAACA
129 TTAAATAATACATTTGAAACA
*
70065163 TTTCTTGCTAAAATAATAT-AAAAATAAAATACGAAAATAATATATTTT-AAAAATAATATACGA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
* *
70065226 AAATAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAA-AAATATAAAAAACACTT
66 AAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTT
*
70065290 AAATAATGCATTTGAAACA
131 AAATAATACATTTGAAACA
* * * *
70065309 TTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG
1 TTTTTTGCTAAAATAATATAAA-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
* * *
70065374 AAAATAAAAAAATACGAAAAAAAGTGCAAAAATTAGGGTTATTTATTAAATTAATATAAAAAA-A
65 AAAAT-AAAAAATACG-AATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACA
*
70065438 CTTAAGTAATACATTTGAAACA
128 CTTAAATAATACATTTGAAACA
*
70065460 TTTTTTGCTAAAATAATATAAAAAATAAAATACAAAAATAATATATTTTAAAAAATAATATACGA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
* * **
70065525 AAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAAATATAAAAAAACACT
66 AAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAAACACT
70065590 TAAATAATACATTTGAAACA
130 TAAATAATACATTTGAAACA
* * * *
70065610 TTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG
1 TTTTTTGCTAAAATAATATAAA-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
*
70065675 AAAATAAAAAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACA
65 AAAAT--AAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACA
* *
70065740 CTTACATAACACATTTGAAACA
128 CTTAAATAATACATTTGAAACA
*
70065762 TTTTTTCCTAAAATAATAT-AAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
* * *
70065826 AAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAA-AAATATAAAAAACACTT
66 AAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTT
70065890 AAATAATACATTTGAAACA
131 AAATAATACATTTGAAACA
* * * * *
70065909 TTATGTACTAAAATAGTATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACG
1 TTTTTTGCTAAAATAATATAAA-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
*
70065974 AAAATAAAAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACAC
65 AAAAT-AAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACAC
*
70066039 TTAAGGTAATACATTTGAAACA
129 TTAA-ATAATACATTTGAAACA
* * ** *
70066061 TTTTTTGTTAAAATAATATAAAAAATAATATATAAAAATAATATATTTTAGAAAATAATATACGA
1 TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
* * *
70066126 AAATAAAAAATACGAATAAAGTGCTAAAATCTGGGTTATTTATTAAA-AAATATAAAAAAACACT
66 AAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAAACACT
70066190 TAAATAATACATTTGAAACA
130 TAAATAATACATTTGAAACA
* * * * *
70066210 TTATGTACTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACA
1 TTTTTTGCTAAAATAATATAAA-AAATAAAATACGAAAATAATATATTTTAAAAAATAATATACG
*
70066275 AAAATAAAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAAACAC
65 AAAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAAACAC
*
70066340 TTACATAATACATTTGAAACA
129 TTAAATAATACATTTGAAACA
*
70066361 TTTTTTGCTAAAATAATATAAAAAAATAAAATAC-AATAATAATATATTTTAAAAAACAATATAC
1 TTTTTTGCTAAAATAATAT-AAAAAATAAAATACGAA-AATAATATATTTTAAAAAATAATATAC
70066425 GAAAATA
64 GAAAATA
70066432 TTTTACTTAT
Statistics
Matches: 1658, Mismatches: 159, Indels: 79
0.87 0.08 0.04
Matches are distributed among these distances:
138 10 0.01
139 76 0.05
141 2 0.00
143 14 0.01
144 43 0.03
145 14 0.01
146 96 0.06
147 131 0.08
148 166 0.10
149 163 0.10
150 375 0.23
151 383 0.23
152 98 0.06
153 87 0.05
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.29
Consensus pattern (149 bp):
TTTTTTGCTAAAATAATATAAAAAATAAAATACGAAAATAATATATTTTAAAAAATAATATACGA
AAATAAAAAATACGAATAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTT
AAATAATACATTTGAAACA
Found at i:70065669 original size:301 final size:298
Alignment explanation
Indices: 70064433--70066431 Score: 3352
Period size: 301 Copynumber: 6.7 Consensus size: 298
70064423 GAGTTTTTTG
** * * *
70064433 CTAAAATAATATAAA-AAATAAAATATAAAAATAGTATATTTTAAAAAATAAAATCCGAAAATAA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
* * * *
70064497 AAAAATACGAACAATGTGCCAAAGTCAGGGTTATTTATTAAATTAATAT-AAAAA-ACTTAAATA
66 AAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAGTA
* * *
70064560 ATACATTTGAAACATTTTTTGCTAAAATCATAT--TAA-AAAATACGAAAATAATATATTTT-AA
131 ATACATTTGAAACATTTTTTGCTAAAATAATATAAAAATAAAATACAAAAATAATATATTTTAAA
*
70064621 AAATAATATACG--AA-AAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAATA
196 AAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAATA
*
70064683 T-AAAAACACTTATATAATACATTTGAAACATTATGTA
261 TAAAAAACACTTAAATAATACATTTGAAACATTATGTA
*
70064720 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAATAA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAT--
**
70064785 AAAAAAATACGAAGAAAGTGCCAAAATCAGTATTATTTATTAAATTAATATAAAAAACACTTAAG
64 AAAAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAG
*
70064850 TAATACATTTGAAACATTTCTTGCTAAAATAATATAAAAATAAAATACAAAAATAATATATTTT-
129 TAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAATAAAATACAAAAATAATATATTTTA
70064914 AAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATCT-GGGTTATTTATTAAAAA
194 AAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAAT-TAGGGTTATTTATTAAAAA
*
70064978 ATATAAAAAACACTTAAATAATGCATTTGAAACATTATGTA
258 ATATAAAAAACACTTAAATAATACATTTGAAACATTATGTA
*
70065019 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAATAA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
**
70065084 AAAAATACGAAGAAAGTGCCAAAATCAGTATTATTTATTAAATTAATATAAAAAACACTTAAGTA
66 AAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAGTA
* *
70065149 ATACATTTGAAACATTTCTTGCTAAAATAATATAAAAATAAAATACGAAAATAATATATTTT-AA
131 ATACATTTGAAACATTTTTTGCTAAAATAATATAAAAATAAAATACAAAAATAATATATTTTAAA
*
70065213 AAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATCAGGGTTATTTATTAAAAAATA
196 AAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAATA
*
70065278 TAAAAAACACTTAAATAATGCATTTGAAACATTATGTA
261 TAAAAAACACTTAAATAATACATTTGAAACATTATGTA
70065316 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
* * *
70065381 AAAAATACGAAAAAAAGTGCAAAAATTAGGGTTATTTATTAAATTAATATAAAAAA-ACTTAAGT
66 AAAAATACG-AAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAGT
70065445 AATACATTTGAAACATTTTTTGCTAAAATAATATAAAAAATAAAATACAAAAATAATATATTTTA
130 AATACATTTGAAACATTTTTTGCTAAAATAATAT-AAAAATAAAATACAAAAATAATATATTTTA
70065510 AAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAA
194 AAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATT-AAAAA
70065575 ATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTA
258 ATAT-AAAAAACACTTAAATAATACATTTGAAACATTATGTA
70065617 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAAT-A
70065682 AAAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTACA-
65 AAAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTA-AG
* * *
70065746 TAACACATTTGAAACATTTTTTCCTAAAATAATATAAAAATAAAATACGAAAATAATATATTTTA
129 TAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAATAAAATACAAAAATAATATATTTTA
70065811 AAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAA
194 AAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAA
70065876 TATAAAAAACACTTAAATAATACATTTGAAACATTATGTA
259 TATAAAAAACACTTAAATAATACATTTGAAACATTATGTA
*
70065916 CTAAAATAGTATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
70065981 AAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAGGT
66 AAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAA-GT
* * *
70066046 AATACATTTGAAACATTTTTTGTTAAAATAATATAAAAAATAATATATAAAAATAATATATTTTA
130 AATACATTTGAAACATTTTTTGCTAAAATAATAT-AAAAATAAAATACAAAAATAATATATTTTA
*
70066111 GAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATCT-GGGTTATTTATTAAAAA
194 AAAAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAAT-TAGGGTTATTTATTAAAAA
70066175 ATATAAAAAAACACTTAAATAATACATTTGAAACATTATGTA
258 ATAT-AAAAAACACTTAAATAATACATTTGAAACATTATGTA
*
70066217 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACAAAAAT-A
1 CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
70066281 AAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAAACACTTACA-
66 AAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATAT-AAAAAACACTTA-AG
*
70066345 TAATACATTTGAAACATTTTTTGCTAAAATAATATAAAAAAATAAAATACAATAATAATATATTT
129 TAATACATTTGAAACATTTTTTGCTAAAATAATAT--AAAAATAAAATACAAAAATAATATATTT
*
70066410 TAAAAAACAATATACGAAAATA
192 TAAAAAATAATATACGAAAATA
70066432 TTTTACTTAT
Statistics
Matches: 1629, Mismatches: 53, Indels: 46
0.94 0.03 0.03
Matches are distributed among these distances:
287 15 0.01
288 41 0.03
290 46 0.03
291 5 0.00
292 39 0.02
294 2 0.00
295 36 0.02
297 348 0.21
298 179 0.11
299 286 0.18
300 194 0.12
301 387 0.24
302 50 0.03
303 1 0.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.29
Consensus pattern (298 bp):
CTAAAATAATATAAAGAAATAAAATACGAAAATAATATATTTTAAAAAATAAGATACGAAAATAA
AAAAATACGAAGAAAGTGCCAAAATCAGGGTTATTTATTAAATTAATATAAAAAACACTTAAGTA
ATACATTTGAAACATTTTTTGCTAAAATAATATAAAAATAAAATACAAAAATAATATATTTTAAA
AAATAATATACGAAAATAAAAAATACGAATAAAGTGCTAAAATTAGGGTTATTTATTAAAAAATA
TAAAAAACACTTAAATAATACATTTGAAACATTATGTA
Found at i:70066099 original size:13 final size:13
Alignment explanation
Indices: 70066070--70066106 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
70066060 ATTTTTTGTT
70066070 AAAATAATATA-A
1 AAAATAATATATA
70066082 AAAATAATATATA
1 AAAATAATATATA
70066095 AAAATAATATAT
1 AAAATAATATAT
70066107 TTTAGAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATAATATATA
Found at i:70069003 original size:17 final size:17
Alignment explanation
Indices: 70068983--70069021 Score: 62
Period size: 17 Copynumber: 2.3 Consensus size: 17
70068973 AATACATTAC
70068983 AACATTAATCT-AATTGG
1 AACATTAAT-TAAATTGG
70069000 AACATTAATTAAATTGG
1 AACATTAATTAAATTGG
70069017 AACAT
1 AACAT
70069022 ACTATTACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 1 0.05
17 20 0.95
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.33
Consensus pattern (17 bp):
AACATTAATTAAATTGG
Found at i:70072874 original size:23 final size:25
Alignment explanation
Indices: 70072844--70072905 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 25
70072834 AACAATAATA
**
70072844 ACTAACAATAAT-T-AGGGTTTTTT
1 ACTAACAATAATATAAGGAATTTTT
70072867 ACTAACAATAATAATAAGGAATTTTT
1 ACTAACAATAAT-ATAAGGAATTTTT
70072893 ACTAACAATAATA
1 ACTAACAATAATA
70072906 ATAACTAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 12 0.35
25 2 0.06
26 20 0.59
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.35
Consensus pattern (25 bp):
ACTAACAATAATATAAGGAATTTTT
Found at i:70073022 original size:17 final size:19
Alignment explanation
Indices: 70073000--70073045 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 19
70072990 AAAATTTATA
70073000 CCTTCTTTT-TTC-CTTCT
1 CCTTCTTTTCTTCTCTTCT
70073017 CCTTCTTTTCCTTCTCTTCT
1 CCTTCTTTT-CTTCTCTTCT
70073037 CCTTTCTTT
1 CC-TTCTTT
70073046 CCCTTTATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.36
19 3 0.12
20 7 0.28
21 6 0.24
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (19 bp):
CCTTCTTTTCTTCTCTTCT
Found at i:70073027 original size:15 final size:14
Alignment explanation
Indices: 70073003--70073036 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
70072993 ATTTATACCT
70073003 TCTT-TTTTCCTTC
1 TCTTCTTTTCCTTC
70073016 TCCTTCTTTTCCTTC
1 T-CTTCTTTTCCTTC
70073031 TCTTCT
1 TCTTCT
70073037 CCTTTCTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 8 0.42
15 10 0.53
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (14 bp):
TCTTCTTTTCCTTC
Found at i:70073037 original size:20 final size:19
Alignment explanation
Indices: 70073000--70073050 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 19
70072990 AAAATTTATA
70073000 CCTTCTTTT--TTCCTTCT
1 CCTTCTTTTCCTTCCTTCT
70073017 CCTTCTTTTCCTTCTCTTCT
1 CCTTCTTTTCCTTC-CTTCT
*
70073037 CCTTTCTTTCCCTT
1 CC-TTCTTTTCCTT
70073051 TATTTTCTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.31
19 3 0.10
20 7 0.24
21 10 0.34
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (19 bp):
CCTTCTTTTCCTTCCTTCT
Found at i:70073204 original size:17 final size:18
Alignment explanation
Indices: 70073184--70073227 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
70073174 TGTTTTTTAT
70073184 TTTTTTTTCATTTTCAG-
1 TTTTTTTTCATTTTCAGC
*
70073201 TTTTTTTTCTTTTTCAGCC
1 TTTTTTTTCATTTTCAG-C
70073220 TTTTTTTT
1 TTTTTTTT
70073228 TCACTGTTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.67
19 8 0.33
ACGTcount: A:0.07, C:0.14, G:0.05, T:0.75
Consensus pattern (18 bp):
TTTTTTTTCATTTTCAGC
Found at i:70081042 original size:17 final size:18
Alignment explanation
Indices: 70081020--70081054 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
70081010 TATATATTAT
*
70081020 AATATTTA-ATTAACTAA
1 AATATTTAGAATAACTAA
70081037 AATATTTAGAATAACTAA
1 AATATTTAGAATAACTAA
70081055 GATTAATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (18 bp):
AATATTTAGAATAACTAA
Found at i:70081352 original size:30 final size:31
Alignment explanation
Indices: 70081318--70081378 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
70081308 ATATGAGTAT
* * *
70081318 TACCATTACAT-TTTTTGTCATTTTAGTCAC
1 TACCATTACATACTTTAGTCATTCTAGTCAC
70081348 TACCATTACATACTTTAGTCATTCTAGTCAC
1 TACCATTACATACTTTAGTCATTCTAGTCAC
70081379 CGGTTCTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 11 0.41
31 16 0.59
ACGTcount: A:0.26, C:0.23, G:0.07, T:0.44
Consensus pattern (31 bp):
TACCATTACATACTTTAGTCATTCTAGTCAC
Found at i:70083185 original size:32 final size:32
Alignment explanation
Indices: 70083144--70083208 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
70083134 AGAGAAAGTG
70083144 CAGATATTAATATATTGTAACTGTTTGCATGT
1 CAGATATTAATATATTGTAACTGTTTGCATGT
*
70083176 CAGATATTAATATATTGTAATTGTTTGCATGT
1 CAGATATTAATATATTGTAACTGTTTGCATGT
70083208 C
1 C
70083209 TTTTTGTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (32 bp):
CAGATATTAATATATTGTAACTGTTTGCATGT
Found at i:70083538 original size:68 final size:68
Alignment explanation
Indices: 70083458--70083595 Score: 258
Period size: 68 Copynumber: 2.0 Consensus size: 68
70083448 GACGAAAAGA
70083458 AAAGCTAATAATATATAGGAACTTGGTTTTTGCTTCTCATTGTTCCCTCTTGAATACTGCTAGAA
1 AAAGCTAATAATATATAGGAACTTGGTTTTTGCTTCTCATTGTTCCCTCTTGAATACTGCTAGAA
70083523 ATT
66 ATT
*
70083526 AAAGCTAATAATATATAGGAACTTGGTTTTTGCTTCTCATTGTTTCCTCTTGAATACTGCTAGAA
1 AAAGCTAATAATATATAGGAACTTGGTTTTTGCTTCTCATTGTTCCCTCTTGAATACTGCTAGAA
*
70083591 GTT
66 ATT
70083594 AA
1 AA
70083596 GAGATTTGAT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (68 bp):
AAAGCTAATAATATATAGGAACTTGGTTTTTGCTTCTCATTGTTCCCTCTTGAATACTGCTAGAA
ATT
Found at i:70087359 original size:33 final size:33
Alignment explanation
Indices: 70087317--70087384 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
70087307 AATGAATCAT
70087317 CCCAGCACCGCCACCCACCAATCATCTCACCTG
1 CCCAGCACCGCCACCCACCAATCATCTCACCTG
70087350 CCCAGCACCGCCACCCACCAATCATCTCACCTG
1 CCCAGCACCGCCACCCACCAATCATCTCACCTG
70087383 CC
1 CC
70087385 AATCATCACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.24, C:0.56, G:0.09, T:0.12
Consensus pattern (33 bp):
CCCAGCACCGCCACCCACCAATCATCTCACCTG
Found at i:70087386 original size:16 final size:16
Alignment explanation
Indices: 70087334--70087391 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
70087324 CCGCCACCCA
70087334 CCAATCATCTCACCTG
1 CCAATCATCTCACCTG
* * * * **
70087350 CCCAGCACCGCCACCCA
1 CCAATCATC-TCACCTG
70087367 CCAATCATCTCACCTG
1 CCAATCATCTCACCTG
70087383 CCAATCATC
1 CCAATCATC
70087392 ACCACACACT
Statistics
Matches: 29, Mismatches: 12, Indels: 2
0.67 0.28 0.05
Matches are distributed among these distances:
16 19 0.66
17 10 0.34
ACGTcount: A:0.26, C:0.50, G:0.07, T:0.17
Consensus pattern (16 bp):
CCAATCATCTCACCTG
Found at i:70088354 original size:19 final size:18
Alignment explanation
Indices: 70088307--70088356 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
70088297 TGTTATTCGT
* *
70088307 TTAAAATTTTTTATCATA
1 TTAATATTTTTTATAATA
* *
70088325 TTGATAATTTTTATAATAA
1 TTAATATTTTTTATAAT-A
70088344 TTAATATTTTTTA
1 TTAATATTTTTTA
70088357 AAAATATATT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
18 13 0.52
19 12 0.48
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (18 bp):
TTAATATTTTTTATAATA
Found at i:70091672 original size:21 final size:21
Alignment explanation
Indices: 70091633--70091673 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
70091623 ATCTGCTCAA
* *
70091633 ACTCCACCTGTTTTCGAGTAC
1 ACTCCACCTGCTGTCGAGTAC
*
70091654 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTCGAGTA
70091674 TTGCTCGTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.32, G:0.20, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTCGAGTAC
Found at i:70097156 original size:114 final size:115
Alignment explanation
Indices: 70096807--70097217 Score: 707
Period size: 115 Copynumber: 3.6 Consensus size: 115
70096797 AGAACGAACA
*
70096807 TTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGCGCC
1 TTAGCGGCGCTTTTTAAAAA-CGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGCGCC
*
70096872 GCAAAAGAGTTTTACAGAACAACGTCGTTTTGTATTGACCTTTTAGTGGCT
65 GCAAAAGAGTTTTACAAAACAACGTCGTTTTGTATTGACCTTTTAGTGGCT
* * *
70096923 TTAGTGGCGCTTCTTAAAAACGCCGCTATAGGTACACCTATAGCGGCGTTTTTCAAAAAGCGCCG
1 TTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGCGCCG
*
70096988 CAAAAGAGTTTTACAAAACAACGTCATTTTGTATTGACCTTTTAGTGGCT
66 CAAAAGAGTTTTACAAAACAACGTCGTTTTGTATTGACCTTTTAGTGGCT
*
70097038 TTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTT-AGAAAGCGCCG
1 TTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGCGCCG
* *
70097102 CAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCT
66 CAAAAGAGTTTTACAAAACAACGTCGTTTTGTATTGACCTTTTAGTGGCT
* *
70097152 TTAGCGGCGCTTTTTAAAAACGTCGCTATAGGTACACCTTTAGCGGCGTTTTTTAAAAAGCGCCG
1 TTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGCGCCG
70097217 C
66 C
70097218 TATAGGTACA
Statistics
Matches: 279, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
114 109 0.39
115 153 0.55
116 17 0.06
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.31
Consensus pattern (115 bp):
TTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGCGCCG
CAAAAGAGTTTTACAAAACAACGTCGTTTTGTATTGACCTTTTAGTGGCT
Found at i:70097230 original size:40 final size:40
Alignment explanation
Indices: 70097150--70097251 Score: 152
Period size: 40 Copynumber: 2.6 Consensus size: 40
70097140 CTTTTAGTGG
* *
70097150 CTTTAGCGGCGCTTTTTAAAAA-CGTCGCTATAGGTACAC
1 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACAC
70097189 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACAC
1 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACAC
* * *
70097229 CTATAGTGGCGTTTTTCAAAAAG
1 CTTTAGCGGCGTTTTTTAAAAAG
70097252 TTCCACAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 21 0.37
40 36 0.63
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACAC
Found at i:70097263 original size:269 final size:269
Alignment explanation
Indices: 70096921--70097530 Score: 904
Period size: 269 Copynumber: 2.3 Consensus size: 269
70096911 CTTTTAGTGG
* *
70096921 CTTTAGTGGCGCTTCTTAAAAACGCCGCTATAGGTACACCTATAGCGGCGTTTTTCAAAAAGCGC
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTATAGCGGCGTTTTTCAAAAAGCGC
* *
70096986 CGCAAAAGAGTTTTACAAAACAACGTCATTTTGTATTGACCTTTTAGTGGCTTTAGCGGCGCTTT
66 CACAAAAGAGTTTTACAAAACAACGTCATTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTTT
* * *
70097051 TT-AAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTT-AGAAAGCGCCGCAAAAGAGTTTT
131 TTGAAAAACGCCGCTATAAGTACACCTTTAGCGGCGTTTTTCAAAAAGAGCCGCAAAAGAGTTTT
* * * *
70097114 ACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTTTTTAAAAACGTCGCT
196 ACAAAACGACATCGTTTTATATTGACCTTTTAGTGGCTGTAGCGGCGC-TATTAAAAACGCCGCT
70097179 ATAGGTACAC
260 ATAGGTACAC
* * **
70097189 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACACCTATAGTGGCGTTTTTCAAAAAGTT
1 CTTTAGCGGCGCTTTTTAAAAA-CGCCGCTATAGGTACACCTATAGCGGCGTTTTTCAAAAAGCG
* * *
70097254 CCACAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCTTTAGCTGCGCTT
65 CCACAAAAGAGTTTTACAAAACAACGTCATTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTT
70097319 TTTGAAAAACGCCGCTATAAGTACACCTTTAGCGGCGTTTTTCAAAAAGAGCCGCAAAAGAGTTT
130 TTTGAAAAACGCCGCTATAAGTACACCTTTAGCGGCGTTTTTCAAAAAGAGCCGCAAAAGAGTTT
* * *
70097384 TGCAAAACGACATCGTTTTTTATTGACCTTTTAGTTGCTGTAGCGGCGCTATTAAAAACGCCGCT
195 TACAAAACGACATCGTTTTATATTGACCTTTTAGTGGCTGTAGCGGCGCTATTAAAAACGCCGCT
70097449 ATAGGTACAC
260 ATAGGTACAC
* * ** * *
70097459 CTTTAGCGGCGCTTTATAAAAAACGCCGCTA-ATGCTTTATCTTTAGCGGCGTTTTT-AAAAAGC
1 CTTTAGCGGCGCTTT-TTAAAAACGCCGCTATA-GGTACACCTATAGCGGCGTTTTTCAAAAAGC
*
70097522 GTCACAAAA
64 GCCACAAAA
70097531 AAAACATTTC
Statistics
Matches: 305, Mismatches: 32, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
268 19 0.06
269 116 0.38
270 100 0.33
271 70 0.23
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (269 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTATAGCGGCGTTTTTCAAAAAGCGC
CACAAAAGAGTTTTACAAAACAACGTCATTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTTT
TTGAAAAACGCCGCTATAAGTACACCTTTAGCGGCGTTTTTCAAAAAGAGCCGCAAAAGAGTTTT
ACAAAACGACATCGTTTTATATTGACCTTTTAGTGGCTGTAGCGGCGCTATTAAAAACGCCGCTA
TAGGTACAC
Found at i:70097317 original size:155 final size:155
Alignment explanation
Indices: 70097036--70097373 Score: 545
Period size: 155 Copynumber: 2.2 Consensus size: 155
70097026 CTTTTAGTGG
* * *
70097036 CTTTAGCGGCGCTTTTTAAAAA-CGCCGCTATAGGTACACCTTTAGCGGCGTTTTTAGAAAGCGC
1 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACACCTATAGCGGCGTTTTTAAAAAGCGC
*
70097100 CGCAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTTT
66 CACAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTTT
* *
70097165 TT-AAAAACGTCGCTATAGGTACAC
131 TTGAAAAACGCCGCTATAAGTACAC
* **
70097189 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACACCTATAGTGGCGTTTTTCAAAAAGTT
1 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACACCTATAGCGGCGTTTTT-AAAAAGCG
*
70097254 CCACAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCTTTAGCTGCGCTT
65 CCACAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTT
70097319 TTTGAAAAACGCCGCTATAAGTACAC
130 TTTGAAAAACGCCGCTATAAGTACAC
* *
70097345 CTTTAGCGGCGTTTTTCAAAAAGAGCCGC
1 CTTTAGCGGCGTTTTTTAAAAAGCGCCGC
70097374 AAAAGAGTTT
Statistics
Matches: 170, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
153 21 0.12
154 31 0.18
155 71 0.42
156 47 0.28
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (155 bp):
CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACACCTATAGCGGCGTTTTTAAAAAGCGC
CACAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGGCTTTAGCGGCGCTTT
TTGAAAAACGCCGCTATAAGTACAC
Found at i:70097393 original size:116 final size:115
Alignment explanation
Indices: 70097189--70097469 Score: 411
Period size: 116 Copynumber: 2.4 Consensus size: 115
70097179 ATAGGTACAC
* * * **
70097189 CTTTAGCGGCGTTTTTTAAAAAGCGCCGCTATAGGTACACCTATAGTGGCGTTTTTCAAAAAGTT
1 CTTTAGCGGCGCTTTTTAAAAA-CGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGAG
*
70097254 CCACAAAAGAGTTTTACAAAACGACGTCGTTTTATATTGACCTTTTAGTGG
65 CCACAAAAGAGTTTTACAAAACGACATCGTTTTATATTGACCTTTTAGTGG
* *
70097305 CTTTAGCTGCGCTTTTTGAAAAACGCCGCTATAAGTACACCTTTAGCGGCGTTTTTCAAAAAGAG
1 CTTTAGCGGCGCTTTTT-AAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGAG
* * * *
70097370 CCGCAAAAGAGTTTTGCAAAACGACATCGTTTTTTATTGACCTTTTAGTTG
65 CCACAAAAGAGTTTTACAAAACGACATCGTTTTATATTGACCTTTTAGTGG
* *
70097421 CTGTAGCGGCGC-TATTAAAAACGCCGCTATAGGTACACCTTTAGCGGCG
1 CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTTTAGCGGCG
70097470 CTTTATAAAA
Statistics
Matches: 148, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
114 32 0.22
115 3 0.02
116 108 0.73
117 5 0.03
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (115 bp):
CTTTAGCGGCGCTTTTTAAAAACGCCGCTATAGGTACACCTTTAGCGGCGTTTTTCAAAAAGAGC
CACAAAAGAGTTTTACAAAACGACATCGTTTTATATTGACCTTTTAGTGG
Found at i:70097931 original size:11 final size:11
Alignment explanation
Indices: 70097915--70097946 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
70097905 TTAGGGATCA
70097915 TGGTTTAAGGG
1 TGGTTTAAGGG
70097926 TGGTTTAAGGG
1 TGGTTTAAGGG
*
70097937 TAGTTTAAGG
1 TGGTTTAAGG
70097947 TTGGGGTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (11 bp):
TGGTTTAAGGG
Found at i:70098022 original size:14 final size:14
Alignment explanation
Indices: 70098003--70098050 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
70097993 TGGTTCATGT
70098003 TTTAGGATTTAGGG
1 TTTAGGATTTAGGG
70098017 TTTAGGATTT-GAGG
1 TTTAGGATTTAG-GG
* *
70098031 ATTAGAAGTTTAGGG
1 TTTAGGA-TTTAGGG
70098046 TTTAG
1 TTTAG
70098051 ATTAATTAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 1 0.04
14 17 0.61
15 9 0.32
16 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.33, T:0.42
Consensus pattern (14 bp):
TTTAGGATTTAGGG
Found at i:70098163 original size:14 final size:14
Alignment explanation
Indices: 70098144--70098188 Score: 65
Period size: 14 Copynumber: 3.2 Consensus size: 14
70098134 TTAATTATCA
70098144 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
70098158 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
*
70098172 ATATTA-TTTAGGGT
1 TTA-TAGTTTAGGGT
70098186 TTA
1 TTA
70098189 AAGTGTATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 26 0.93
15 2 0.07
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:70098207 original size:28 final size:29
Alignment explanation
Indices: 70098150--70098217 Score: 68
Period size: 28 Copynumber: 2.4 Consensus size: 29
70098140 ATCATTATAG
* * * *
70098150 TTTAGGGTTTATAGTTTAGGGTATATTA-
1 TTTAGGGTTTAAAGTGTAGAGTATACTAT
70098178 TTTAGGGTTTAAAGTGTATGAGT-TACTAT
1 TTTAGGGTTTAAAGTGTA-GAGTATACTAT
*
70098207 TTTAAGGTTTA
1 TTTAGGGTTTA
70098218 TGGTTTAAGG
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
28 20 0.61
29 13 0.39
ACGTcount: A:0.26, C:0.01, G:0.24, T:0.49
Consensus pattern (29 bp):
TTTAGGGTTTAAAGTGTAGAGTATACTAT
Found at i:70098838 original size:21 final size:22
Alignment explanation
Indices: 70098814--70098861 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
70098804 AAATGCTCAA
*
70098814 AAAAATTAAAAA-TTAAAAATT
1 AAAAATTAAAAATTTAAAAACT
70098835 AAAAATTAAAAATTTAAAAACT
1 AAAAATTAAAAATTTAAAAACT
70098857 AAAAA
1 AAAAA
70098862 ACTAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 12 0.48
22 13 0.52
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (22 bp):
AAAAATTAAAAATTTAAAAACT
Found at i:70098862 original size:8 final size:8
Alignment explanation
Indices: 70098850--70098874 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
70098840 TTAAAAATTT
70098850 AAAAACTA
1 AAAAACTA
70098858 AAAAACTA
1 AAAAACTA
70098866 AAAAACTA
1 AAAAACTA
70098874 A
1 A
70098875 TATTTAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAACTA
Found at i:70098869 original size:7 final size:7
Alignment explanation
Indices: 70098814--70098861 Score: 78
Period size: 7 Copynumber: 6.7 Consensus size: 7
70098804 AAATGCTCAA
70098814 AAAAATT
1 AAAAATT
70098821 AAAAATT
1 AAAAATT
70098828 AAAAATT
1 AAAAATT
70098835 AAAAATT
1 AAAAATT
70098842 AAAAATTT
1 AAAAA-TT
*
70098850 AAAAACT
1 AAAAATT
70098857 AAAAA
1 AAAAA
70098862 ACTAAAAAAC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
7 32 0.82
8 7 0.18
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:70099052 original size:41 final size:41
Alignment explanation
Indices: 70099007--70099108 Score: 132
Period size: 41 Copynumber: 2.5 Consensus size: 41
70098997 AAAAAAAATT
* * *
70099007 AAAATTAAGCAATAGTGGCGGTTTTAGGAAAAATGCCACAA
1 AAAATTAAGCTATAGTGGCGGTTTTAGCAAAAACGCCACAA
* * *
70099048 AAAATTAAGCTATAGTGGCGTTTTTATCAAAAACGCCGCAA
1 AAAATTAAGCTATAGTGGCGGTTTTAGCAAAAACGCCACAA
* *
70099089 AAAACTAAACTATAGTGGCG
1 AAAATTAAGCTATAGTGGCG
70099109 TTGTTTTTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.24
Consensus pattern (41 bp):
AAAATTAAGCTATAGTGGCGGTTTTAGCAAAAACGCCACAA
Found at i:70099109 original size:41 final size:41
Alignment explanation
Indices: 70099018--70099131 Score: 131
Period size: 41 Copynumber: 2.8 Consensus size: 41
70099008 AAATTAAGCA
* ** * * * *
70099018 ATAGTGGCGGTTTTAGGAAAAATGCCACAAAAAATTAAGCT
1 ATAGTGGCGTTTTTATCAAAAACGCCGCAAAAAACTAAACT
70099059 ATAGTGGCGTTTTTATCAAAAACGCCGCAAAAAACTAAACT
1 ATAGTGGCGTTTTTATCAAAAACGCCGCAAAAAACTAAACT
**
70099100 ATAGTGGCGTTGTTT-TTTAAAACGCCGCAAAA
1 ATAGTGGCGTT-TTTATCAAAAACGCCGCAAAA
70099132 GGTGAAATTA
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
41 60 0.95
42 3 0.05
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (41 bp):
ATAGTGGCGTTTTTATCAAAAACGCCGCAAAAAACTAAACT
Found at i:70103392 original size:23 final size:23
Alignment explanation
Indices: 70103365--70103613 Score: 256
Period size: 23 Copynumber: 10.9 Consensus size: 23
70103355 TGGATGCTGT
*
70103365 TGTTTAAATGCTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
70103388 TGTTTAAATGCTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *
70103411 TGTTTAAATGTTGTAAATTGCAG
1 TGTTTAAATGCTGTAAATTGAAG
*
70103434 TGTTTAAATGTTGTAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* * *
70103457 TGTTTAAGTACTGCAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
** *
70103480 TGTTTAGTTGCTGGAAATTG-AG
1 TGTTTAAATGCTGTAAATTGAAG
* *
70103502 ATGTTTTATTGCTGT-AATTG-AG
1 -TGTTTAAATGCTGTAAATTGAAG
* * *
70103524 TTGTATAAATGTTGTTAATTG-AG
1 -TGTTTAAATGCTGTAAATTGAAG
*
70103547 ATG-TTAAAGTGCTGCAAATTGAAG
1 -TGTTTAAA-TGCTGTAAATTGAAG
*
70103571 TGTTTAAATGCTATAAATTGAAG
1 TGTTTAAATGCTGTAAATTGAAG
* *
70103594 TGCTTAAATGTTGTAAATTG
1 TGTTTAAATGCTGTAAATTG
70103614 GCATTTGTTT
Statistics
Matches: 191, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
22 23 0.12
23 161 0.84
24 7 0.04
ACGTcount: A:0.32, C:0.05, G:0.22, T:0.41
Consensus pattern (23 bp):
TGTTTAAATGCTGTAAATTGAAG
Found at i:70103873 original size:19 final size:19
Alignment explanation
Indices: 70103850--70103896 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
70103840 ATTTAATCTA
*
70103850 ATTTTTATTATTTA-TTTT
1 ATTTTTATTATATATTTTT
* *
70103868 AGTTTTGATTCTATATTTTT
1 A-TTTTTATTATATATTTTT
70103888 ATTTTTATT
1 ATTTTTATT
70103897 TTAATATTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 1 0.04
19 17 0.74
20 5 0.22
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.72
Consensus pattern (19 bp):
ATTTTTATTATATATTTTT
Found at i:70104233 original size:43 final size:43
Alignment explanation
Indices: 70104160--70104259 Score: 155
Period size: 43 Copynumber: 2.3 Consensus size: 43
70104150 TAAAATTTTG
**
70104160 TGACCTTTAGCGGCGTTTGTGAGATTAGCGCCGCTAAAGGTCA
1 TGACCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCA
* *
70104203 TGACATTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCA
1 TGACCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCA
*
70104246 TGACCTTTAACGGC
1 TGACCTTTAGCGGC
70104260 ATTTTTTTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (43 bp):
TGACCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCA
Found at i:70110396 original size:11 final size:12
Alignment explanation
Indices: 70110368--70110399 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
70110358 AAAAAAAAAG
70110368 GAGAG-AGGGAA
1 GAGAGAAGGGAA
70110379 GAGAGAAGGG-A
1 GAGAGAAGGGAA
70110390 GAGAGAAGGG
1 GAGAGAAGGG
70110400 GAATCCGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 16 0.80
12 4 0.20
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (12 bp):
GAGAGAAGGGAA
Found at i:70117441 original size:46 final size:46
Alignment explanation
Indices: 70117382--70117636 Score: 384
Period size: 46 Copynumber: 5.5 Consensus size: 46
70117372 TTTCTGTCAT
* *
70117382 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
70117428 GTTGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* * * *
70117474 GTTGCCATAGTATCTATCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
*
70117520 GTTGCCATGGTATCTTTCAACCATGGTCTTATTAATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* ** * *
70117566 GTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATGAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
70117612 GTTGCCATGGTATCTTTCAACCATG
1 GTTGCCATGGTATCTTTCAACCATG
70117637 ATGGTTGTCA
Statistics
Matches: 189, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 189 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:70117494 original size:92 final size:92
Alignment explanation
Indices: 70117338--70117636 Score: 393
Period size: 92 Copynumber: 3.2 Consensus size: 92
70117328 ACATGATGCT
* * * *
70117338 ATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTTTCAA
1 ATAGTATCTTTCAACCATGGTC-T--T-ATTCA-TTTCATATCACGTTGCCATGGTATCTTTCAA
70117402 CCATGGTCTTATTCTTTTCATGTCACGTTGCC
61 CCATGGTCTTATTCTTTTCATGTCACGTTGCC
* * *
70117434 ATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGTTGCCATAGTATCTATCAACCATG
1 ATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATG
70117499 GTCTTATTCTTTTCATGTCACGTTGCC
66 GTCTTATTCTTTTCATGTCACGTTGCC
* * *
70117526 ATGGTATCTTTCAACCATGGTCTTATTAATTTCATATCACGTTGTCATGGTATCTTTCAACCATG
1 ATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATG
** * * * *
70117591 GTCTTACACATTTCATATGAGGTTGCC
66 GTCTTATTCTTTTCATGTCACGTTGCC
*
70117618 ATGGTATCTTTCAACCATG
1 ATAGTATCTTTCAACCATG
70117637 ATGGTTGTCA
Statistics
Matches: 184, Mismatches: 18, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
91 4 0.02
92 158 0.86
93 1 0.01
95 1 0.01
96 20 0.11
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (92 bp):
ATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATG
GTCTTATTCTTTTCATGTCACGTTGCC
Found at i:70117541 original size:138 final size:138
Alignment explanation
Indices: 70117366--70117636 Score: 427
Period size: 138 Copynumber: 2.0 Consensus size: 138
70117356 GGTCTTACTC
* ** *
70117366 ATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGTT
1 ATTCATTTTCTGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTAATTTCATATCACGTT
**
70117431 GCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCAGGTTGCCATAGTATCTATCAACC
66 GCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTATCTATCAACC
70117496 ATGGTCTT
131 ATGGTCTT
70117504 ATTC-TTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTAATTTCATATCACGT
1 ATTCATTTTC-TGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTAATTTCATATCACGT
* * * * *
70117568 TGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATATGAGGTTGCCATGGTATCTTTCAAC
65 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTATCTATCAAC
70117633 CATG
130 CATG
70117637 ATGGTTGTCA
Statistics
Matches: 121, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
137 5 0.04
138 116 0.96
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (138 bp):
ATTCATTTTCTGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTAATTTCATATCACGTT
GCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATAGTATCTATCAACC
ATGGTCTT
Found at i:70117648 original size:28 final size:27
Alignment explanation
Indices: 70117607--70117664 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 27
70117597 CACATTTCAT
70117607 ATGAGGTTGCCATGGTATCTTTCAACC
1 ATGAGGTTGCCATGGTATCTTTCAACC
*
70117634 ATGATGGTTGTCATGGTATCTTTCAACC
1 ATGA-GGTTGCCATGGTATCTTTCAACC
70117662 ATG
1 ATG
70117665 GTCTTACACA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 4 0.14
28 25 0.86
ACGTcount: A:0.22, C:0.19, G:0.22, T:0.36
Consensus pattern (27 bp):
ATGAGGTTGCCATGGTATCTTTCAACC
Found at i:70119781 original size:17 final size:18
Alignment explanation
Indices: 70119759--70119793 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70119749 AATTTTTCCC
*
70119759 TTTTT-CCTTCTTTCTTT
1 TTTTTCCCTCCTTTCTTT
70119776 TTTTTCCCTCCTTTCTTT
1 TTTTTCCCTCCTTTCTTT
70119794 CCCCTGCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTCCCTCCTTTCTTT
Found at i:70128302 original size:18 final size:18
Alignment explanation
Indices: 70128279--70128339 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
70128269 CAATCTCAAC
*
70128279 TACTGTATACGTGAACAG
1 TACTGTATACGTGAATAG
* *
70128297 TACTGTATACGTAAATAA
1 TACTGTATACGTGAATAG
*
70128315 TACTGTATACATGAATAG
1 TACTGTATACGTGAATAG
70128333 TACTGTA
1 TACTGTA
70128340 AATGGTCGTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (18 bp):
TACTGTATACGTGAATAG
Found at i:70138849 original size:126 final size:127
Alignment explanation
Indices: 70138621--70138874 Score: 402
Period size: 126 Copynumber: 2.0 Consensus size: 127
70138611 AGAAAACCCG
* *
70138621 GTCATAATCATGCTGTCATTATTGATCAAAAGGCCCTGCCCCTACCCCAGCCAATTGAACAATCA
1 GTCATAACCATGCTGTCATTATTGATC--AAGGCCCTGCCCCTACCCCAGCCAATGGAACAATCA
* *
70138686 GATAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAGTCCTGGGTCAATAACTGTA
64 GATAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAATCCAGGGTCAATAACTGTA
* *
70138750 GTCATAACCATGCTGTCATTATTGATC-AGGCCCTGCCCTTACTCCAGCCAATGGAACAATCAGA
1 GTCATAACCATGCTGTCATTATTGATCAAGGCCCTGCCCCTACCCCAGCCAATGGAACAATCAGA
* * *
70138814 TAGGTACTGTCAGTCTGAAGCAAACCGGCAATTACAAGCAAAATCCAGGGTCAATAACTGT
66 TAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAATCCAGGGTCAATAACTGT
70138875 GACCCTATAA
Statistics
Matches: 116, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
126 90 0.78
129 26 0.22
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (127 bp):
GTCATAACCATGCTGTCATTATTGATCAAGGCCCTGCCCCTACCCCAGCCAATGGAACAATCAGA
TAGGAACTGTCAGCCTGAAGCAAACCAGCAATTACAAGCAAAATCCAGGGTCAATAACTGTA
Found at i:70149084 original size:31 final size:31
Alignment explanation
Indices: 70149049--70149107 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
70149039 TTTATTTATA
* *
70149049 TTTATATTTTCTTTTTCTTTTTTTAAAATTT
1 TTTATATTTTATTTTTCATTTTTTAAAATTT
*
70149080 TTTATTTTTTATTTTTCATTTTTTAAAA
1 TTTATATTTTATTTTTCATTTTTTAAAA
70149108 ATTGAATAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.22, C:0.05, G:0.00, T:0.73
Consensus pattern (31 bp):
TTTATATTTTATTTTTCATTTTTTAAAATTT
Found at i:70149493 original size:17 final size:17
Alignment explanation
Indices: 70149456--70149494 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
70149446 AACATTGTTC
*
70149456 AAATTTTAAAAAATATT
1 AAATTTTAAAAAATATA
70149473 AAATTTTAAAAACATA-A
1 AAATTTTAAAAA-ATATA
70149490 AAATT
1 AAATT
70149495 ATCAAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 17 0.85
18 3 0.15
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATTTTAAAAAATATA
Found at i:70151705 original size:21 final size:21
Alignment explanation
Indices: 70151681--70151723 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
70151671 AAAGTTTCCA
70151681 TTGT-TGAGAATTGATTGAAAT
1 TTGTGTGA-AATTGATTGAAAT
*
70151702 TTGTGTGAAATTGGTTGAAAT
1 TTGTGTGAAATTGATTGAAAT
70151723 T
1 T
70151724 AAGCTCAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.30, C:0.00, G:0.26, T:0.44
Consensus pattern (21 bp):
TTGTGTGAAATTGATTGAAAT
Found at i:70153964 original size:20 final size:21
Alignment explanation
Indices: 70153924--70153973 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
70153914 CCGGCCCACT
70153924 AAATCAAATAAATAAAACCAA
1 AAATCAAATAAATAAAACCAA
**
70153945 AAAT-AAATAAATAAGTCCAA
1 AAATCAAATAAATAAAACCAA
70153965 AACATCAAA
1 AA-ATCAAA
70153974 GTCCATTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 16 0.64
21 6 0.24
22 3 0.12
ACGTcount: A:0.68, C:0.14, G:0.02, T:0.16
Consensus pattern (21 bp):
AAATCAAATAAATAAAACCAA
Found at i:70159826 original size:30 final size:31
Alignment explanation
Indices: 70159786--70159887 Score: 113
Period size: 30 Copynumber: 3.4 Consensus size: 31
70159776 AAAAAAATAA
* *
70159786 AAATTGCATTTTGACCCCTAAACTTTTC-CT
1 AAATTTCATTTTGACCCTTAAACTTTTCTCT
*
70159816 AAATTTCATTTTGACCCTTAAAC-TTTCTTT
1 AAATTTCATTTTGACCCTTAAACTTTTCTCT
* *
70159846 AAATTTCACTTAGACCCTTAAAC-TTTCAT-T
1 AAATTTCATTTTGACCCTTAAACTTTTC-TCT
*
70159876 ATATTTCATTTT
1 AAATTTCATTTT
70159888 AATCCTAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
29 4 0.06
30 57 0.92
31 1 0.02
ACGTcount: A:0.28, C:0.22, G:0.04, T:0.46
Consensus pattern (31 bp):
AAATTTCATTTTGACCCTTAAACTTTTCTCT
Found at i:70160294 original size:14 final size:14
Alignment explanation
Indices: 70160276--70160327 Score: 61
Period size: 14 Copynumber: 3.7 Consensus size: 14
70160266 AAGAAGAAGA
70160276 AAAGAAAGAAAAAA-
1 AAAGAAA-AAAAAAG
***
70160290 AAAGAAAAAAGGGG
1 AAAGAAAAAAAAAG
70160304 AAAGAAAAAAAAAG
1 AAAGAAAAAAAAAG
70160318 AAAGAAAAAA
1 AAAGAAAAAA
70160328 TAAAAAATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
13 3 0.10
14 28 0.90
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAG
Found at i:70160470 original size:23 final size:24
Alignment explanation
Indices: 70160433--70160486 Score: 101
Period size: 23 Copynumber: 2.3 Consensus size: 24
70160423 AGCAAAAAAA
70160433 AAGCAGCAAAAAAGAAGAAGAAAG
1 AAGCAGCAAAAAAGAAGAAGAAAG
70160457 AAGCAG-AAAAAAGAAGAAGAAAG
1 AAGCAGCAAAAAAGAAGAAGAAAG
70160480 AAGCAGC
1 AAGCAGC
70160487 CCAAATGCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 23 0.79
24 6 0.21
ACGTcount: A:0.65, C:0.09, G:0.26, T:0.00
Consensus pattern (24 bp):
AAGCAGCAAAAAAGAAGAAGAAAG
Found at i:70160522 original size:9 final size:9
Alignment explanation
Indices: 70160508--70160546 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
70160498 CCCAGCGCAG
70160508 CAGCAGGCC
1 CAGCAGGCC
70160517 CAGCAGGCC
1 CAGCAGGCC
70160526 CAGCAGGCC
1 CAGCAGGCC
*
70160535 C-CCAGGCC
1 CAGCAGGCC
70160543 CAGC
1 CAGC
70160547 GCAGTAGCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
8 7 0.26
9 20 0.74
ACGTcount: A:0.21, C:0.49, G:0.31, T:0.00
Consensus pattern (9 bp):
CAGCAGGCC
Found at i:70160531 original size:18 final size:17
Alignment explanation
Indices: 70160508--70160546 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
70160498 CCCAGCGCAG
*
70160508 CAGCAGGCCCAGCAGGCC
1 CAGCAGGCCC-CCAGGCC
70160526 CAGCAGGCCCCCAGGCC
1 CAGCAGGCCCCCAGGCC
70160543 CAGC
1 CAGC
70160547 GCAGTAGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.21, C:0.49, G:0.31, T:0.00
Consensus pattern (17 bp):
CAGCAGGCCCCCAGGCC
Found at i:70160638 original size:8 final size:8
Alignment explanation
Indices: 70160627--70160673 Score: 51
Period size: 8 Copynumber: 5.8 Consensus size: 8
70160617 AAAAAGAGAA
70160627 AAAAAAAG
1 AAAAAAAG
*
70160635 -AAAAGAG
1 AAAAAAAG
*
70160642 AGAAAAAG
1 AAAAAAAG
70160650 AAAAAAAG
1 AAAAAAAG
70160658 AAAAAACAAG
1 -AAAAA-AAG
70160668 AAAAAA
1 AAAAAA
70160674 GGGGTTCAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
7 6 0.19
8 13 0.41
9 10 0.31
10 3 0.09
ACGTcount: A:0.83, C:0.02, G:0.15, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:70160643 original size:19 final size:18
Alignment explanation
Indices: 70160614--70160658 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
70160604 AGCCCAGCAG
70160614 AAAAAAAAGAGA-AAAAA
1 AAAAAAAAGAGAGAAAAA
*
70160631 AAAGAAAAGAGAGAAAAA
1 AAAAAAAAGAGAGAAAAA
*
70160649 GAAAAAAAGA
1 AAAAAAAAGA
70160659 AAAAACAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (18 bp):
AAAAAAAAGAGAGAAAAA
Found at i:70160647 original size:15 final size:14
Alignment explanation
Indices: 70160625--70160662 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
70160615 AAAAAAAGAG
70160625 AAAA-AAAAAGAAA
1 AAAAGAAAAAGAAA
*
70160638 AGAGAGAAAAAGAAA
1 A-AAAGAAAAAGAAA
70160653 AAAAGAAAAA
1 AAAAGAAAAA
70160663 ACAAGAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 1 0.05
14 10 0.48
15 10 0.48
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (14 bp):
AAAAGAAAAAGAAA
Found at i:70160663 original size:10 final size:10
Alignment explanation
Indices: 70160612--70160673 Score: 63
Period size: 10 Copynumber: 5.8 Consensus size: 10
70160602 CCAGCCCAGC
70160612 AGAAAAAAAA
1 AGAAAAAAAA
70160622 GAGAAAAAAAA
1 -AGAAAAAAAA
70160633 AGAAAAGAGAGAA
1 AGAAAA-A-A-AA
70160646 A-AAGAAAAAA
1 AGAA-AAAAAA
*
70160656 AGAAAAAACA
1 AGAAAAAAAA
70160666 AGAAAAAA
1 AGAAAAAA
70160674 GGGGTTCAAT
Statistics
Matches: 45, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
10 22 0.49
11 14 0.31
12 4 0.09
13 5 0.11
ACGTcount: A:0.82, C:0.02, G:0.16, T:0.00
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:70160671 original size:15 final size:15
Alignment explanation
Indices: 70160612--70160671 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
70160602 CCAGCCCAGC
70160612 AGAAAAAA-AAGAGAA
1 AGAAAAAAGAAGA-AA
*
70160627 A-AAAAAAGAA-AAG
1 AGAAAAAAGAAGAAA
*
70160640 AGAGAAAAAGAAAAAA
1 AGA-AAAAAGAAGAAA
*
70160656 AGAAAAAACAAGAAA
1 AGAAAAAAGAAGAAA
70160671 A
1 A
70160672 AAGGGGTTCA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
13 2 0.05
14 8 0.22
15 22 0.59
16 5 0.14
ACGTcount: A:0.82, C:0.02, G:0.17, T:0.00
Consensus pattern (15 bp):
AGAAAAAAGAAGAAA
Found at i:70160857 original size:5 final size:5
Alignment explanation
Indices: 70160849--70160873 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
70160839 TTAATTCAAT
70160849 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
70160874 AATACTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:70161071 original size:21 final size:20
Alignment explanation
Indices: 70161039--70161080 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
70161029 TCGCGTTTCG
70161039 AAATTTTCGTGTCTTCAAAA
1 AAATTTTCGTGTCTTCAAAA
*
70161059 AAATTTCTCGTGTTTTCAAAA
1 AAATTT-TCGTGTCTTCAAAA
70161080 A
1 A
70161081 TAAGGTAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (20 bp):
AAATTTTCGTGTCTTCAAAA
Found at i:70161081 original size:19 final size:19
Alignment explanation
Indices: 70161039--70161080 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 19
70161029 TCGCGTTTCG
70161039 AAATTTTCGTGTCTTCAAAA
1 AAATTTTCGTGTCTTC-AAA
*
70161059 AAATTTCTCGTGTTTTCAAA
1 AAATTT-TCGTGTCTTCAAA
70161079 AA
1 AA
70161081 TAAGGTAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
AAATTTTCGTGTCTTCAAA
Found at i:70161267 original size:38 final size:36
Alignment explanation
Indices: 70161186--70161273 Score: 117
Period size: 38 Copynumber: 2.4 Consensus size: 36
70161176 AAAAATCAGA
*
70161186 AAAATTTTCGTG--TTTTCAAAAAATTCCATTTTTC
1 AAAATTTTCGTGTTTTTTCAAAAAATTCCATATTTC
*
70161220 AAAATTTTTCGTGTTTTTTTAAAAAATTTCCATATTTC
1 AAAA-TTTTCGTGTTTTTTCAAAAAA-TTCCATATTTC
70161258 TAAAATTTTCGTGTTT
1 -AAAATTTTCGTGTTT
70161274 AAAAATTTCG
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
34 4 0.09
35 8 0.17
37 10 0.21
38 21 0.45
39 4 0.09
ACGTcount: A:0.31, C:0.11, G:0.07, T:0.51
Consensus pattern (36 bp):
AAAATTTTCGTGTTTTTTCAAAAAATTCCATATTTC
Found at i:70161416 original size:34 final size:34
Alignment explanation
Indices: 70161185--70161579 Score: 156
Period size: 35 Copynumber: 11.1 Consensus size: 34
70161175 GAAAAATCAG
* * *
70161185 AAAAATTTTCGTGTTTTCAAAAAATTCCATTTTTC
1 AAAAATTTTCGTGTTTTC-AAATATTCTATGTTTC
* * * * *
70161220 AAAATTTTTCGTGTTTTTTTAAAAAATTTCCATATTTC
1 AAAAATTTTCGTG---TTTTCAAATA-TTCTATGTTTC
* **
70161258 TAAAATTTTCGTGTTTAAAAAT-TTCGTAT-TTTC
1 AAAAATTTTCGTGTTTTCAAATATTC-TATGTTTC
* ** * *
70161291 AAAATTTTTATTTTTTTCAACA-ATTCTCGTGTTTC
1 AAAAATTTTCGTGTTTTCAA-ATATTCT-ATGTTTC
* * * * * * *
70161326 ACAAATTCTCGTATTTTAAAATTTTTTATGTTTTA
1 AAAAATTTTCGTGTTTTCAAATATTCTATG-TTTC
* *
70161361 AAAAATAAATTTC-TCGTGTTTCAAATATTGTCATGTTTT
1 AAAAAT---TTTCGT-GT-TTTCAAATATTCT-ATGTTTC
* * *
70161400 AAAAATTTTCATGTTTCTAAAATGTTCGTA--TTTC
1 AAAAATTTTCGTGTTT-TCAAATATTC-TATGTTTC
** *
70161434 AAAAAATCCTCGTGTTTTCAAAAATTCTCATGTTTC
1 -AAAAATTTTCGTGTTTTCAAATATTCT-ATGTTTC
*
70161470 AAAAATCTTCGTGTTTTCAAA-ATTCTAGTGTTTC
1 AAAAATTTTCGTGTTTTCAAATATTCTA-TGTTTC
* * **
70161504 AAAAATTTTCATGTTTTCAAAAATTTCCCCTGTTTTC
1 AAAAATTTTCGTGTTTTCAAATA-TT-CTATG-TTTC
* * * * * *
70161541 AAAAATTCTCGTATTTTAAAATTTTCTTTTTTTC
1 AAAAATTTTCGTGTTTTCAAATATTCTATGTTTC
70161575 AAAAA
1 AAAAA
70161580 AAAACTTCCG
Statistics
Matches: 273, Mismatches: 58, Indels: 59
0.70 0.15 0.15
Matches are distributed among these distances:
33 23 0.08
34 60 0.22
35 85 0.31
36 24 0.09
37 30 0.11
38 29 0.11
39 19 0.07
40 3 0.01
ACGTcount: A:0.32, C:0.13, G:0.07, T:0.48
Consensus pattern (34 bp):
AAAAATTTTCGTGTTTTCAAATATTCTATGTTTC
Found at i:70161458 original size:18 final size:18
Alignment explanation
Indices: 70161185--70161656 Score: 166
Period size: 17 Copynumber: 26.4 Consensus size: 18
70161175 GAAAAATCAG
*
70161185 AAAAATTTTCGTGTTTTC
1 AAAAATTCTCGTGTTTTC
*
70161203 AAAAAATTC-CAT-TTTTC
1 -AAAAATTCTCGTGTTTTC
* * *
70161220 AAAATTTTTCGTGTTTTTTTA
1 AAAAATTCTCGTG---TTTTC
* *
70161241 AAAAATT-TCCAT-ATTTC
1 AAAAATTCT-CGTGTTTTC
* *
70161258 TAAAATTTTCGTG-TTT-
1 AAAAATTCTCGTGTTTTC
*
70161274 AAAAATT-TCGTATTTTC
1 AAAAATTCTCGTGTTTTC
* * ** *
70161291 AAAATTTTTATTTTTTTC
1 AAAAATTCTCGTGTTTTC
*
70161309 AACAATTCTCGTG-TTTC
1 AAAAATTCTCGTGTTTTC
* *
70161326 ACAAATTCTCGTATTTT-
1 AAAAATTCTCGTGTTTTC
* * ** *
70161343 AAAATTTTTTATGTTTTAAAA
1 AAAAATTCTCGTGTTTT---C
70161364 AATAAATTTCTCGTG-TTTC
1 AA-AAA-TTCTCGTGTTTTC
* * *
70161383 AAATATTGTCATGTTTT-
1 AAAAATTCTCGTGTTTTC
* *
70161400 AAAAATTTTCATG-TTTC
1 AAAAATTCTCGTGTTTTC
* *
70161417 TAAAATGT-TCGT-ATTTC
1 AAAAAT-TCTCGTGTTTTC
*
70161434 AAAAAATCCTCGTGTTTTC
1 -AAAAATTCTCGTGTTTTC
*
70161453 AAAAATTCTCATG-TTTC
1 AAAAATTCTCGTGTTTTC
70161470 AAAAA-TCTTCGTGTTTTC
1 AAAAATTC-TCGTGTTTTC
*
70161488 -AAAATTCTAGTG-TTTC
1 AAAAATTCTCGTGTTTTC
* *
70161504 AAAAATTTTCATGTTTTC
1 AAAAATTCTCGTGTTTTC
* *
70161522 AAAAATTTCCCCTGTTTTC
1 AAAAA-TTCTCGTGTTTTC
*
70161541 AAAAATTCTCGTATTTT-
1 AAAAATTCTCGTGTTTTC
* * *
70161558 -AAAATTTTCTTTTTTTC
1 AAAAATTCTCGTGTTTTC
70161575 AAAAAAAAACTTC-CGTGTTTT-
1 ----AAAAA-TTCTCGTGTTTTC
*
70161596 ATAAA-TCTCCGTGTTTTC
1 AAAAATTCT-CGTGTTTTC
**
70161614 AAAAAATTCTCG-ACTTTC
1 -AAAAATTCTCGTGTTTTC
*
70161632 AAAAAATT-TCGTGTTTTA
1 -AAAAATTCTCGTGTTTTC
70161650 AAAAATT
1 AAAAATT
70161657 GACATTGTTT
Statistics
Matches: 335, Mismatches: 74, Indels: 90
0.67 0.15 0.18
Matches are distributed among these distances:
15 6 0.02
16 37 0.11
17 133 0.40
18 85 0.25
19 34 0.10
20 4 0.01
21 14 0.04
22 15 0.04
23 7 0.02
ACGTcount: A:0.32, C:0.13, G:0.07, T:0.47
Consensus pattern (18 bp):
AAAAATTCTCGTGTTTTC
Found at i:70161505 original size:16 final size:16
Alignment explanation
Indices: 70161449--70161507 Score: 57
Period size: 16 Copynumber: 3.5 Consensus size: 16
70161439 ATCCTCGTGT
70161449 TTTCAAAAATTCTCA-TG
1 TTTC-AAAATTCT-AGTG
* *
70161466 TTTCAAAAATCTTCGTG
1 TTTCAAAATTC-TAGTG
70161483 TTTTCAAAATTCTAGTG
1 -TTTCAAAATTCTAGTG
70161500 TTTCAAAA
1 TTTCAAAA
70161508 ATTTTCATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
16 14 0.40
17 11 0.31
18 10 0.29
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.42
Consensus pattern (16 bp):
TTTCAAAATTCTAGTG
Found at i:70161562 original size:53 final size:53
Alignment explanation
Indices: 70161185--70161579 Score: 226
Period size: 53 Copynumber: 7.4 Consensus size: 53
70161175 GAAAAATCAG
* * * *
70161185 AAAAATTTTCGTGTTTTCAAAAA-ATTCCAT-TTTTCAAAATTTTTCGTGTTTTTTT
1 AAAAATTTTCATGTTTTCAAAAATATTCC-TGTTTTCAAAAATTCTC--G-TATTTT
* * * * *
70161240 AAAAAATTTCCAT-ATTTCTAAAATTTTCGTG-TTT-AAAAATT-TCGTATTTT
1 -AAAAATTTTCATGTTTTCAAAAATATTCCTGTTTTCAAAAATTCTCGTATTTT
* * * * * *
70161290 CAAAATTTTTATTTTTTTCAACAAT-TCTCGTG-TTTCACAAATTCTCGTATTTT
1 AAAAATTTTCA-TGTTTTCAAAAATAT-TCCTGTTTTCAAAAATTCTCGTATTTT
* * * * * * * *
70161343 AAAATTTTTTATGTTTTAAAAAATAAATTTCTCGTGTTTCAAATATTGTCATGTTTT
1 AAAAATTTTCATGTTTTCAAAAAT--ATTCCT-GT-TTTCAAAAATTCTCGTATTTT
* * * *
70161400 AAAAATTTTCATG-TTTCTAAAATGTT-C-GTATTTCAAAAAATCCTCGTGTTTT
1 AAAAATTTTCATGTTTTCAAAAATATTCCTGT-TTTC-AAAAATTCTCGTATTTT
* * * * * *
70161452 CAAAAATTCTCATG-TTTCAAAAATCTTCGTGTTTTC-AAAATTCTAGTGTTTC
1 -AAAAATTTTCATGTTTTCAAAAATATTCCTGTTTTCAAAAATTCTCGTATTTT
70161504 AAAAATTTTCATGTTTTCAAAAAT-TTCCCCTGTTTTCAAAAATTCTCGTATTTT
1 AAAAATTTTCATGTTTTCAAAAATATT--CCTGTTTTCAAAAATTCTCGTATTTT
* *
70161558 -AAAATTTTCTTTTTTTCAAAAA
1 AAAAATTTTCATGTTTTCAAAAA
70161580 AAAACTTCCG
Statistics
Matches: 267, Mismatches: 51, Indels: 45
0.74 0.14 0.12
Matches are distributed among these distances:
49 8 0.03
50 7 0.03
51 37 0.14
52 52 0.19
53 72 0.27
54 27 0.10
55 16 0.06
56 21 0.08
57 27 0.10
ACGTcount: A:0.32, C:0.13, G:0.07, T:0.48
Consensus pattern (53 bp):
AAAAATTTTCATGTTTTCAAAAATATTCCTGTTTTCAAAAATTCTCGTATTTT
Found at i:70161768 original size:20 final size:20
Alignment explanation
Indices: 70161724--70161795 Score: 96
Period size: 19 Copynumber: 3.6 Consensus size: 20
70161714 CAAAATTTTT
70161724 GTGTTTTCAAAATAAAATT-
1 GTGTTTTCAAAATAAAATTC
*
70161743 GTGTTTTAAAAATAAAATTC
1 GTGTTTTCAAAATAAAATTC
70161763 GTGTTTTCAAAA-AAAATTC
1 GTGTTTTCAAAATAAAATTC
70161782 -TCGTGTTTCAAAAT
1 GT-GT-TTTCAAAAT
70161796 TTTCGTGTTT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.02
19 27 0.57
20 19 0.40
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (20 bp):
GTGTTTTCAAAATAAAATTC
Found at i:70161794 original size:16 final size:16
Alignment explanation
Indices: 70161775--70161896 Score: 57
Period size: 16 Copynumber: 7.1 Consensus size: 16
70161765 GTTTTCAAAA
70161775 AAAATTCTCGTGTTTC
1 AAAATTCTCGTGTTTC
* *
70161791 AAAATTTTCGTGTTTTTTTAA
1 AAAATTCTCGTG----TTT-C
*
70161812 AAAAAT-TCGTGTTTC
1 AAAATTCTCGTGTTTC
* * *
70161827 TAAAATTCTTGTATTTT
1 -AAAATTCTCGTGTTTC
*
70161844 AAAATATTTCGTGTTTC
1 AAAAT-TCTCGTGTTTC
*** *
70161861 GAAAAAAGGTTGTGTTTC
1 --AAAATTCTCGTGTTTC
70161879 AAAATTCTCGTGTTTC
1 AAAATTCTCGTGTTTC
70161895 AA
1 AA
70161897 TTGGATCACG
Statistics
Matches: 76, Mismatches: 20, Indels: 20
0.66 0.17 0.17
Matches are distributed among these distances:
16 38 0.50
17 13 0.17
18 8 0.11
19 4 0.05
20 8 0.11
21 5 0.07
ACGTcount: A:0.30, C:0.11, G:0.13, T:0.46
Consensus pattern (16 bp):
AAAATTCTCGTGTTTC
Found at i:70161794 original size:18 final size:17
Alignment explanation
Indices: 70161773--70161896 Score: 60
Period size: 17 Copynumber: 7.1 Consensus size: 17
70161763 GTGTTTTCAA
70161773 AAAAAATTCTCGTGTTTC
1 AAAAAATT-TCGTGTTTC
* *
70161791 -AAAATTTTCGTGTTTTTTT
1 AAAAAATTTCGTG---TTTC
*
70161810 AAAAAAATTCGTGTTTC
1 AAAAAATTTCGTGTTTC
* * * *
70161827 -TAAAATTCTTGTATTTT
1 AAAAAATT-TCGTGTTTC
*
70161844 AAAATATTTCGTGTTTC
1 AAAAAATTTCGTGTTTC
*
70161861 GAAAAAAGGTT-GTGTTTC
1 -AAAAAA-TTTCGTGTTTC
70161879 --AAAATTCTCGTGTTTC
1 AAAAAATT-TCGTGTTTC
70161895 AA
1 AA
70161897 TTGGATCACG
Statistics
Matches: 76, Mismatches: 18, Indels: 24
0.64 0.15 0.20
Matches are distributed among these distances:
14 1 0.01
15 5 0.07
16 17 0.22
17 21 0.28
18 17 0.22
19 5 0.07
20 10 0.13
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.45
Consensus pattern (17 bp):
AAAAAATTTCGTGTTTC
Found at i:70179210 original size:18 final size:19
Alignment explanation
Indices: 70179187--70179225 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
70179177 TATAAAGAAA
70179187 AAAAATATG-CATATATAT
1 AAAAATATGACATATATAT
70179205 AAAAATATGTACATATATAT
1 AAAAATATG-ACATATATAT
70179225 A
1 A
70179226 TAGGTGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.47
20 10 0.53
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAATATGACATATATAT
Found at i:70179674 original size:3 final size:3
Alignment explanation
Indices: 70179663--70179717 Score: 67
Period size: 3 Copynumber: 18.3 Consensus size: 3
70179653 CAATAATACC
* * *
70179663 AAT ACT AAT AAT AGT AA- AGAT GAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
70179708 AAT AAT AAT A
1 AAT AAT AAT A
70179718 GCAAAAGTAC
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 43 0.98
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:70181706 original size:46 final size:47
Alignment explanation
Indices: 70181600--70181830 Score: 292
Period size: 46 Copynumber: 4.9 Consensus size: 47
70181590 TTTGACATGA
* * * * *
70181600 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCATTTTCATATCACGT
*
70181650 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
*
70181696 TGCCATGGTATCTTTCGACCATGGTCTTATTCA-TTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
* *
70181742 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTT-ATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
**
70181788 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCA
70181831 GAGAGCATAC
Statistics
Matches: 167, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
45 8 0.05
46 131 0.78
47 4 0.02
49 1 0.01
50 23 0.14
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.42
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCATATCACGT
Found at i:70181831 original size:46 final size:46
Alignment explanation
Indices: 70181648--70181830 Score: 294
Period size: 46 Copynumber: 4.0 Consensus size: 46
70181638 TTTCTGTCAT
* * *
70181648 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAC
* *
70181694 GTTGCCATGGTATCTTTCGACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAC
* *
70181740 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTTATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAC
*
70181786 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCA
70181831 GAGAGCATAC
Statistics
Matches: 128, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 128 1.00
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAC
Found at i:70188265 original size:18 final size:20
Alignment explanation
Indices: 70188230--70188274 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 20
70188220 TTCTTTATTA
70188230 AATATTATTAGTATTATT-TC
1 AATATTATTAG-ATTATTATC
70188250 TAATATTATTA-A-TATTATC
1 -AATATTATTAGATTATTATC
70188269 AATATT
1 AATATT
70188275 TTTTTTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 10 0.43
19 3 0.13
21 10 0.43
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.53
Consensus pattern (20 bp):
AATATTATTAGATTATTATC
Found at i:70188406 original size:26 final size:28
Alignment explanation
Indices: 70188367--70188426 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
70188357 TTTCATATTG
*
70188367 TTATTATTAGTATT-ATA-ATATTATAT
1 TTATTATTAATATTAATATATATTATAT
*
70188393 TTATTATTAATATTAATATATATTTTAT
1 TTATTATTAATATTAATATATATTATAT
70188421 TATATT
1 T-TATT
70188427 TGTATATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 13 0.45
27 3 0.10
28 9 0.31
29 4 0.14
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (28 bp):
TTATTATTAATATTAATATATATTATAT
Found at i:70188453 original size:22 final size:24
Alignment explanation
Indices: 70188408--70188453 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
70188398 ATTAATATTA
* *
70188408 ATATATATTTTATTATATTTGTAT
1 ATATATACTTTATTATATTAGTAT
70188432 ATATATACTTT-TTATA-TAGTAT
1 ATATATACTTTATTATATTAGTAT
70188454 TATCGTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 5 0.25
23 5 0.25
24 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (24 bp):
ATATATACTTTATTATATTAGTAT
Found at i:70188640 original size:29 final size:29
Alignment explanation
Indices: 70188603--70188682 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 29
70188593 TCATTTCTTC
70188603 ATTAT-TTTTTTATTTATTATTTT-AAAT
1 ATTATATTTTTTATTTATTATTTTAAAAT
70188630 ACTCT-TATTTTATGTATATTATT-TTTTAAAAT
1 A-T-TATATTTT-T-TAT-TTATTATTTTAAAAT
*
70188662 ATTATATTTTTTATATATTAT
1 ATTATATTTTTTATTTATTAT
70188683 GTATATTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 16
0.72 0.02 0.27
Matches are distributed among these distances:
27 1 0.02
28 6 0.14
29 9 0.21
30 3 0.07
31 14 0.33
32 10 0.23
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (29 bp):
ATTATATTTTTTATTTATTATTTTAAAAT
Found at i:70188698 original size:20 final size:20
Alignment explanation
Indices: 70188634--70188699 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
70188624 TTAAATACTC
*
70188634 TTATTTTATGTATATTATTTT
1 TTATATTATGTATATT-TTTT
* *
70188655 TTAAAATAT-TATATTTTTT
1 TTATATTATGTATATTTTTT
*
70188674 ATATATTATGTATATTTTTT
1 TTATATTATGTATATTTTTT
70188694 TTATAT
1 TTATAT
70188700 CCTATTATTC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
19 10 0.27
20 21 0.57
21 6 0.16
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATATTATGTATATTTTTT
Found at i:70188928 original size:24 final size:22
Alignment explanation
Indices: 70188891--70188945 Score: 56
Period size: 24 Copynumber: 2.4 Consensus size: 22
70188881 TATGTAAATG
* *
70188891 TTATGTAGATATTTTAATATCATA
1 TTATGTATACATTTT-ATAT-ATA
*
70188915 TTATGTATACATTTTTTATATA
1 TTATGTATACATTTTATATATA
*
70188937 TTACGTATA
1 TTATGTATA
70188946 TTTATCTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 11 0.41
23 3 0.11
24 13 0.48
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (22 bp):
TTATGTATACATTTTATATATA
Found at i:70189179 original size:18 final size:18
Alignment explanation
Indices: 70189158--70189199 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
70189148 AGTATACGTG
70189158 TATATAATA-TACTTTTTA
1 TATATAATATTA-TTTTTA
70189176 TATATAATATTATTTTTA
1 TATATAATATTATTTTTA
70189194 TATATA
1 TATATA
70189200 CCATTATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 21 0.91
19 2 0.09
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATAATATTATTTTTA
Found at i:70189205 original size:18 final size:18
Alignment explanation
Indices: 70189170--70189206 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
70189160 TATAATATAC
*
70189170 TTTTTATATATAATATTA
1 TTTTTATATATAACATTA
*
70189188 TTTTTATATATACCATTA
1 TTTTTATATATAACATTA
70189206 T
1 T
70189207 ATTCATACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTTTATATATAACATTA
Found at i:70189462 original size:28 final size:28
Alignment explanation
Indices: 70189420--70189479 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
70189410 TATATTGTTA
70189420 TTTTCTATTATTATTA-TAAATACATTAT
1 TTTTCTATTATTATTAGT-AATACATTAT
*
70189448 TTTTCTTATTA-TATTAGTAGTACATTAT
1 TTTTC-TATTATTATTAGTAATACATTAT
70189476 TTTT
1 TTTT
70189480 TTCTTGTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 23 0.79
29 6 0.21
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.60
Consensus pattern (28 bp):
TTTTCTATTATTATTAGTAATACATTAT
Found at i:70202669 original size:22 final size:22
Alignment explanation
Indices: 70202644--70202686 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
70202634 GTAATAAAAT
70202644 TAAATAAAATTTTGTTTAAGTC
1 TAAATAAAATTTTGTTTAAGTC
70202666 TAAATAAAATTTTGTTTAAGT
1 TAAATAAAATTTTGTTTAAGT
70202687 AATAAATTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (22 bp):
TAAATAAAATTTTGTTTAAGTC
Found at i:70203665 original size:7 final size:7
Alignment explanation
Indices: 70203653--70203677 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
70203643 TGTAGTCTTA
70203653 AATGGTC
1 AATGGTC
70203660 AATGGTC
1 AATGGTC
70203667 AATGGTC
1 AATGGTC
70203674 AATG
1 AATG
70203678 CTTCAGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.28
Consensus pattern (7 bp):
AATGGTC
Found at i:70208684 original size:33 final size:32
Alignment explanation
Indices: 70208629--70208778 Score: 138
Period size: 33 Copynumber: 4.5 Consensus size: 32
70208619 TTTCTGATGG
* * * *
70208629 ACATAACCTTTTCCAGTCGTACACTCGAGGTGT
1 ACAT-ACCTTTTCAAGTGGTACACTCAAAGTGT
*
70208662 ACATTCCCTTTTCAAGTGGTACACTCAAAGTGT
1 ACA-TACCTTTTCAAGTGGTACACTCAAAGTGT
* * * *
70208695 ACGTATTCTTTTCAAGTTGTACACGCAAAGTGT
1 ACATA-CCTTTTCAAGTGGTACACTCAAAGTGT
* * * *
70208728 ACATAGCCTTTTCAAATTGTACACACAAAGTGC
1 ACATA-CCTTTTCAAGTGGTACACTCAAAGTGT
70208761 ACATAACCTTTTCAAGTG
1 ACAT-ACCTTTTCAAGTG
70208779 TACCATTTAG
Statistics
Matches: 96, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
32 1 0.01
33 93 0.97
34 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.32
Consensus pattern (32 bp):
ACATACCTTTTCAAGTGGTACACTCAAAGTGT
Found at i:70208742 original size:66 final size:65
Alignment explanation
Indices: 70208629--70208781 Score: 171
Period size: 66 Copynumber: 2.3 Consensus size: 65
70208619 TTTCTGATGG
* * * * * * *
70208629 ACATAACCTTTTCCAGTCGTACACTCGAGGTGTACATTCCCTTTTCAAGTGGTACACTCAAAGTG
1 ACATAACCTTTTCAAGT-GTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTG
*
70208694 T
65 C
* ** * *
70208695 ACGTATTCTTTTCAAGTTGTACACGCAAAGTGTACATAGCCTTTTCAAATTGTACACACAAAGTG
1 ACATAACCTTTTCAAG-TGTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTG
70208760 C
65 C
70208761 ACATAACCTTTTCAAGTGTAC
1 ACATAACCTTTTCAAGTGTAC
70208782 CATTTAGGTA
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
65 5 0.07
66 64 0.91
67 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (65 bp):
ACATAACCTTTTCAAGTGTACACGCAAAGTGTACATACCCTTTTCAAATGGTACACACAAAGTGC
Found at i:70209498 original size:20 final size:20
Alignment explanation
Indices: 70209456--70209498 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
70209446 TTATCTATCA
* * *
70209456 ATAACCTTTCATTTTCTATC
1 ATAACCTTTCAATTTATAGC
*
70209476 ATAATCTTTCAATTTATAGC
1 ATAACCTTTCAATTTATAGC
70209496 ATA
1 ATA
70209499 TTCATCCATG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.47
Consensus pattern (20 bp):
ATAACCTTTCAATTTATAGC
Found at i:70222126 original size:25 final size:23
Alignment explanation
Indices: 70222074--70222128 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
70222064 TATAAATAGT
70222074 AATAGTGTTAGAAATATACTATA
1 AATAGTGTTAGAAATATACTATA
* *
70222097 TATAGTGTTTGAAGTATATAC-ATAA
1 AATAGTGTTAGAA--ATATACTAT-A
70222122 AATAGTG
1 AATAGTG
70222129 AAAATATAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
23 11 0.42
24 2 0.08
25 13 0.50
ACGTcount: A:0.44, C:0.04, G:0.16, T:0.36
Consensus pattern (23 bp):
AATAGTGTTAGAAATATACTATA
Found at i:70222247 original size:22 final size:22
Alignment explanation
Indices: 70222206--70222247 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
70222196 TATAGTGTAA
*
70222206 AAAATACATACATAATATAATT
1 AAAATACATACATAAGATAATT
* *
70222228 AAAATATATACATACGATAA
1 AAAATACATACATAAGATAA
70222248 CATGTAGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATACATACATAAGATAATT
Found at i:70222290 original size:25 final size:25
Alignment explanation
Indices: 70222262--70222391 Score: 89
Period size: 23 Copynumber: 5.6 Consensus size: 25
70222252 TAGAAAAAAA
*
70222262 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* * *
70222287 ATATATACATAAAATGGTA-T-AAT
1 ATATATACATAATATAGTATTAAAG
* * *
70222310 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
70222334 A-ATATACCTAATATA-T-TAAAAG
1 ATATATACATAATATAGTATTAAAG
* *
70222356 A-ATATATATAATATAATATTAAA-
1 ATATATACATAATATAGTATTAAAG
*
70222379 AAATATA-ATAATA
1 ATATATACATAATA
70222392 ACAAAAAAAA
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
21 1 0.01
22 15 0.18
23 38 0.46
24 13 0.16
25 16 0.19
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:70222295 original size:78 final size:79
Alignment explanation
Indices: 70222147--70222298 Score: 184
Period size: 78 Copynumber: 1.9 Consensus size: 79
70222137 ACTAGTAATG
* * * * * *
70222147 TTAAAATATATAATATATACATATGTATGAAAAAAAAATGTGTACATAATATAGTGTAAAAAATA
1 TTAAAATATATAATAGATACACATGTATGAAAAAAAAATATATAAATAATATAGTATAAAAAATA
70222212 CATACATAATATAA
66 CATACATAATATAA
* *
70222226 TTAAAATATATACATACGATA-ACATGTA-G-AAAAAAAATATATAAATAATATAGTATTAAAGA
1 TTAAAATATATA-ATA-GATACACATGTATGAAAAAAAAATATATAAATAATATAGTATAAAAAA
*
70222288 TATATACATAA
64 TACATACATAA
70222299 AATGGTATAA
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
78 37 0.60
79 13 0.21
80 9 0.15
81 3 0.05
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.31
Consensus pattern (79 bp):
TTAAAATATATAATAGATACACATGTATGAAAAAAAAATATATAAATAATATAGTATAAAAAATA
CATACATAATATAA
Found at i:70222908 original size:30 final size:30
Alignment explanation
Indices: 70222871--70222969 Score: 171
Period size: 30 Copynumber: 3.3 Consensus size: 30
70222861 TAGGTACAAG
*
70222871 TGGTGGTGGAGCAAGTGTGGCTAATGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
70222901 AGGTGGTGGAGCAAGTGTGGCTAGTTGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
70222931 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
70222961 TGGTGGTGG
1 TGGTGGTGG
70222970 CAAAGACTAG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 64 1.00
ACGTcount: A:0.17, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:70223872 original size:90 final size:90
Alignment explanation
Indices: 70223658--70224080 Score: 418
Period size: 90 Copynumber: 4.7 Consensus size: 90
70223648 TAAAAACAGA
* ** * * *
70223658 AATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
* * *
70223723 --AAAACAAAATTTGTAAAACAGAT
66 GCAAAACAAAATTTGAAAAAAAAAT
* * ** *
70223746 -TTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
70223810 GCAAAGATTAAA-TTG-AAAAAAAAT
66 GCAAA-ACAAAATTTGAAAAAAAAAT
* *
70223834 CAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 -AATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
70223899 TTG-ACAAACATAAA-TTGAAAAAAAAAGA
64 TTGCA-AAACA-AAATTTGAAAAAAAAA-T
* * *
70223927 AATTGAAAATATCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
* *
70223990 TGGAAAAACAAAATTTGAAAAATAGAAT
65 T-GCAAAACAAAATTTGAAAAA-AAAAT
** * * * *
70224018 --TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCATCACTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
70224081 TTGAAACACG
Statistics
Matches: 282, Mismatches: 37, Indels: 30
0.81 0.11 0.09
Matches are distributed among these distances:
87 55 0.20
88 7 0.02
89 25 0.09
90 106 0.38
91 56 0.20
92 33 0.12
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (90 bp):
AATTGAAAATACCTCAGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GCAAAACAAAATTTGAAAAAAAAAT
Found at i:70224063 original size:91 final size:88
Alignment explanation
Indices: 70223649--70224188 Score: 513
Period size: 87 Copynumber: 6.0 Consensus size: 88
70223639 ACTAGGTATT
* ** * * *
70223649 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-TCGAGGCTCAACTCACCTCTCGCAATATGAG
70223714 TTGA-TTTTT--AAAACAAAATTTG
65 TTGATTTTTTGAAAAACAAAA-TTG
* ** * ** * *
70223736 TAAAACAGATTTTGAAAATACCTCGGTATGTGACCCGAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-TCGAGGCTCAACTCACCTCTCGCAATATGAG
* **
70223801 TTGA-TTTTTGCAAAGATTAAATTG
65 TTGATTTTTTG-AAAAACAAAATTG
*
70223825 AAAAA-AAATCAATTGAAAATACCTCAGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATG
1 AAAAACAGA--AATTGAAAATACCTCAGCGTGTGATC-GAGGCTCAACTCACCTCTCGCAATATG
*
70223889 AGTTGATTTTTTGACAAACATAAATTG
63 AGTTGATTTTTTGAAAAACA-AAATTG
* * ** *
70223916 AAAAAAAAAGAAATTGAAAATATCTCAGCGTGTCCT-GAGGCTGAACTCACCTCTCGCAATATGA
1 --AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGA
70223980 GTTGATTTTTTGGAAAAACAAAATTTG
64 GTTGATTTTTT-GAAAAACAAAA-TTG
* * * * *
70224007 AAAAATAGAATTTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCATCACTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGA-TCGAGGCTCAACTCACCTCTCGCAATATGAG
* * *
70224072 CTGATTTTTTTGAAACACGGAAATTG
65 TTGA-TTTTTTGAAAAAC-AAAATTG
* * * * * *
70224098 AAGAACAGAAATGGAAAACACCTCAGCGTCT--T-GAGGTTCAACTCACCTCTCGCAATATGAGC
1 AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGT
*
70224160 TGATTTTTTTGAAAGACAGAAATTG
66 TGA-TTTTTTGAAAAACA-AAATTG
70224185 AAAA
1 AAAA
70224189 TACCTCAACG
Statistics
Matches: 377, Mismatches: 58, Indels: 36
0.80 0.12 0.08
Matches are distributed among these distances:
87 114 0.30
88 3 0.01
89 36 0.10
90 102 0.27
91 84 0.22
92 31 0.08
93 5 0.01
94 2 0.01
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.27
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGTGATCGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTGAAAAACAAAATTG
Found at i:70224242 original size:73 final size:73
Alignment explanation
Indices: 70224101--70225658 Score: 1007
Period size: 73 Copynumber: 20.9 Consensus size: 73
70224091 GAAATTGAAG
* * * * *
70224101 AACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
70224164 TTTTTTGA-A
65 -TTTTTGACA
*
70224173 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70224238 TTTTTGACA
65 TTTTTGACA
* * * * *
70224247 AACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
70224310 TTTTTTGA-A
65 -TTTTTGACA
*
70224319 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70224384 TTTTTGACA
65 TTTTTGACA
* * * * * * *
70224393 AACAAAAATTGAAATTACCT-TA-GCGTCTTGAGGTTCGACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
70224456 TTTTTTGAAA
65 -TTTTTGACA
* * *
70224466 AACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAG
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
70224531 TTTTGACA
66 TTTTGACA
* * * *
70224539 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
70224604 TTTTTTAGA
65 TTTTTGACA
* * ** *** * * * * * **
70224613 TACATAAATT--AAA-A----AACG-GAAATTGA-AAACACCTCAGCGTCTTG-AGGT-TCAACT
1 AACAGAAATTGAAAATACCTCAACGTG-TCTTGAGGCTCAACTCA-CCTCTCGCA-ATATGAGTT
* * * *
70224667 CACCTCTCG-CA
63 GA-TTTTTGACA
* * * ** * ** ** ** *
70224678 ATATGAGCTAATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCA
1 A-A-CAG--AA---ATTG-AA-A-A-TACCTCAACGTGTCTTGA-G-G-CTCAA----C---TCA
70224743 CCTCTCGCAATATGAGTTGA-TTTTGACA
45 CCTCTCGCAATATGAGTTGATTTTTGACA
* * *
70224771 AACA-AAATT-AAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA
1 AACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70224832 TTTTTTGA-A
65 -TTTTTGACA
*
70224841 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70224906 -TTTTGACA
65 TTTTTGACA
* * * * *
70224914 AACAAAAATTGAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
70224979 TTTTTGAAA
65 TTTTTGACA
* *
70224988 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAG
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
70225053 TTTTGACA
66 TTTTGACA
* * * * *
70225061 AACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* *
70225126 TTTTTTAGA
65 TTTTTGACA
* **** ** ***** * * ** ** * * * *
70225135 AACATAAATT-AAAA-AAGGGAAATTGAAAACA-CCTCAGCGTGTCCTGAGGCTCAA-CTCACCT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAAC-TCACCT--CTCGCAATATGA-GT
* * *
70225196 CTCGCA-ATATGAGCT
62 -T-G-ATTTTTGA-CA
***** * ** * ** ** ** *
70225211 AA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCG
1 AACAGAAATTG-AA-A-A-TACCTCAACGTGTCTTGA-G-G-CTCAA----C---TCACCTCTCG
70225275 CAATATGAGTTGA-TTTTGACA
52 CAATATGAGTTGATTTTTGACA
* * *
70225296 AACA-AAATT-AAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA
1 AACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70225357 TTTTTTTTGA-A
65 ---TTTTTGACA
*
70225368 AGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
70225433 TTTTTGACA
65 TTTTTGACA
* * * *
70225442 AACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
70225507 TTTTTTGAAA
65 -TTTTTGACA
* *
70225517 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAG
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
70225582 TTTTGACA
66 TTTTGACA
* * * * *
70225590 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
70225655 TTTT
66 TTTT
70225659 TTAGAAACAT
Statistics
Matches: 1150, Mismatches: 236, Indels: 199
0.73 0.15 0.13
Matches are distributed among these distances:
65 1 0.00
66 15 0.01
67 13 0.01
69 46 0.04
70 2 0.00
71 86 0.07
72 96 0.08
73 403 0.35
74 156 0.14
75 188 0.16
76 46 0.04
77 6 0.01
78 3 0.00
79 8 0.01
80 2 0.00
81 14 0.01
82 2 0.00
83 8 0.01
85 10 0.01
86 5 0.00
87 2 0.00
88 3 0.00
89 6 0.01
90 2 0.00
91 6 0.01
92 4 0.00
93 9 0.01
94 8 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (73 bp):
AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACA
Done.