Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 222 of 259
Found at i:70224381 original size:146 final size:146
Alignment explanation
Indices: 70224117--70225665 Score: 1880
Period size: 146 Copynumber: 10.4 Consensus size: 146
70224107 AATGGAAAAC
* *
70224117 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
1 ACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
*
70224182 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATACGAGTTGATTTTTGACA
66 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
70224247 AACAAAAATTGAAATT
131 AACAAAAATTGAAATT
* *
70224263 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAA
1 ACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
*
70224328 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGACA
66 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
70224393 AACAAAAATTGAAATT
131 AACAAAAATTGAAATT
* * * * *
70224409 ACCTTAGCGTCTTGAGGTTCGACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAA
1 ACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
* * *
70224474 TTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGTTTTGACA
66 TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
70224539 AACAAAAATTGAAATT
131 AACAAAAATTGAAATT
*
70224555 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAGATACATAA
1 ACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-G--------
* * * * *
70224620 ATTAAAAAACGGAAATTGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATG
55 ----AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATG
* * * *
70224683 AGCTAATTTTTTGA-AAGACAGAAATTGAAAAT
116 AGTTGA-TTTTTGACAA-ACAAAAATTGAAATT
* *
70224715 ACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTGACAA-ACA-
1 ACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAG
* * *
70224775 AAATT-AAAATTACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
63 AAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTT
* *
70224837 TGA-AAGACAGAAATTGAAAAT
126 TGACAA-ACAAAAATTGAAATT
* * *
70224858 ACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGA---TTTTGACAA-ACAA
1 ACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAG
* * * *
70224919 AAATTGAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTT
63 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTT
* * *
70224984 GAAAAACAGAAATTGAAAAT
127 GACAAACAAAAATTGAAATT
* * * *
70225004 ACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGA--GTTTTGACAA-ACAA
1 ACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAGACAG
* * * *
70225066 AAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
63 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
* **
70225131 TAGAAACATAAATTAAAAAAGGGAAATTGAAAAC
126 T-G--AC-------AAACAA---AAATTGAAATT
* * *
70225165 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAGA
1 ACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGA
*
70225230 AATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGA
64 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
*
70225294 CAAAC-AAAATTAAAATT
129 CAAACAAAAATTGAAATT
* *
70225311 ACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAGACAGAA
1 ACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAA
*
70225376 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGAC
65 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
70225441 AAACAAAAATTGAAATT
130 AAACAAAAATTGAAATT
* *
70225458 ACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGA
* *
70225523 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTTGA
64 AATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
70225588 CAAACAAAAATTGAAATT
129 CAAACAAAAATTGAAATT
* *
70225606 ACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAGAAA
1 ACCTCAGC--GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-GAAA
70225666 CATAAATTAA
Statistics
Matches: 1268, Mismatches: 83, Indels: 101
0.87 0.06 0.07
Matches are distributed among these distances:
142 4 0.00
143 134 0.11
144 49 0.04
145 78 0.06
146 420 0.33
147 89 0.07
148 195 0.15
149 42 0.03
150 3 0.00
151 1 0.00
156 1 0.00
157 6 0.00
158 4 0.00
159 39 0.03
160 66 0.05
161 71 0.06
162 3 0.00
163 63 0.05
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (146 bp):
ACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAA
TTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACA
AACAAAAATTGAAATT
Found at i:70224708 original size:86 final size:87
Alignment explanation
Indices: 70224544--70224713 Score: 225
Period size: 86 Copynumber: 2.0 Consensus size: 87
70224534 TGACAAACAA
** * *
70224544 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAACACCTCAGCG-GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTT
* * * *
70224609 TAGATACATAAATTAAAAAACGG
65 GAAAGACAGAAATTAAAAAACGG
* *
70224632 AAATTGAAAACACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTG
1 AAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTTG
*
70224696 AAAGACAGAAATTGAAAA
66 AAAGACAGAAATTAAAAA
70224714 TACCTCAACG
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
86 54 0.76
88 17 0.24
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (87 bp):
AAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTTG
AAAGACAGAAATTAAAAAACGG
Found at i:70225158 original size:522 final size:526
Alignment explanation
Indices: 70224018--70225753 Score: 3004
Period size: 522 Copynumber: 3.3 Consensus size: 526
70224008 AAAATAGAAT
* * * * *
70224018 TTGAAAATACCTCAGCGTGTGAGTCAAGGCTCAACTCA-TCACTCGCAATATGAGCTGATTTTTT
1 TTGAAATTACCTCAGCGTGTCA-T-GAGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTTTT
* * * * * *
70224082 T-GAAACACGGAAATTGAAGAACAGAAATGGAAAACACCTCAGC-GTCTTGAGGTTCAACTCACC
63 TAGAAACA--TAAATTAAAAAACAGAAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACC
* *
70224145 TCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGC
126 TCTCGCAATATGAGCT-AATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGC
* *
70224210 TCAACTCACCTCTCGCAATACGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT
190 TCAACTCACCTCTCGCAATATGAGTTGA-TTTTGACAAAC-AAAATTAAAATTACCTCAGCGTCT
70224275 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
253 TGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCT
70224340 CAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGA
318 CAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGA
* * *
70224405 AATTACCTTAG-C-GTCTTGAGGTTCGACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAA
383 AATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAA
* * *
70224468 CAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGTT
448 CAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTT
70224533 TTGACAAACAAAAA
513 TTGACAAACAAAAA
* *
70224547 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTAG
1 TTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAG
* * * *
70224612 ATACATAAATTAAAAAACGGAAATTGAAAACACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCG
66 AAACATAAATTAAAAAACAGAAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTCG
70224676 CAATATGAGCTAATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACT
131 CAATATGAGCTAATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACT
70224741 CACCTCTCGCAATATGAGTTGATTTTGACAAACAAAATTAAAATTACCTCAGCGTCTTGAGGTTC
196 CACCTCTCGCAATATGAGTTGATTTTGACAAACAAAATTAAAATTACCTCAGCGTCTTGAGGTTC
70224806 AACTCACCTCTCGCAATATGAGCTGA-TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
261 AACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
70224870 CTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGA-TTTTGACAAACAAAAATTGAAATTACCT
326 CTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCT
70224934 CAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGA-TTTTTTGAAAAACAGAAATT
391 CAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
70224998 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTTGACAAA
456 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTTGACAAA
70225063 CAAAAA
521 CAAAAA
70225069 TTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAG
1 TTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAG
**
70225134 AAACATAAATTAAAAAAGGGAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
66 AAACATAAATTAAAAAACAGAAATTGAAAACACCTCAGCG-GTCCTGAGGCTCAACTCACCTCTC
70225199 GCAATATGAGCTAATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAA
130 GCAATATGAGCTAA-TTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAA
70225264 CTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAATTAAAATTACCTCAGCGTCTTGAGGT
194 CTCACCTCTCGCAATATGAGTTGATTTTGACAAACAAAATTAAAATTACCTCAGCGTCTTGAGGT
70225329 TCAACTCACCTCTCGCAATATGAGCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACG
259 TCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACG
70225394 TGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTA
323 TGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTA
*
70225459 CCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAA
388 CCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAA
70225524 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTTGAC
453 ATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTTGAC
70225589 AAACAAAAA
518 AAACAAAAA
*
70225598 TTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAG
1 TTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAG
70225663 AAACATAAATTAAAAAAAACAGAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
66 AAACATAAATT--AAAAAACAGAAATTGAAAACACCTCAGCG-GTCCTGAGGCTCAACTCACCTC
70225728 TCGCAATATGAGCTAATTTTTTGAAA
128 TCGCAATATGAGCTAATTTTTTGAAA
70225754 AGCAGAATTT
Statistics
Matches: 1161, Mismatches: 33, Indels: 25
0.95 0.03 0.02
Matches are distributed among these distances:
521 30 0.03
522 263 0.23
523 93 0.08
524 47 0.04
525 216 0.19
526 65 0.06
527 109 0.09
528 77 0.07
529 185 0.16
530 10 0.01
531 66 0.06
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (526 bp):
TTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTAG
AAACATAAATTAAAAAACAGAAATTGAAAACACCTCAGCGGTCCTGAGGCTCAACTCACCTCTCG
CAATATGAGCTAATTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTGACAAACAAAATTAAAATTACCTCAGCGTCTTGAGGTTC
AACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
CTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCT
CAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATT
GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTTGACAAA
CAAAAA
Found at i:70225280 original size:163 final size:161
Alignment explanation
Indices: 70224992--70225291 Score: 449
Period size: 163 Copynumber: 1.9 Consensus size: 161
70224982 TTGAAAAACA
* * * * *
70224992 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGAGTTTT
1 GAAATTGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAAGTTTT
* * * *
70225057 GACAAACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACTCACTTCTCGCAATATGAGT
66 GACAAACAAAAATTGAAAATACCTCAACGTGTCATAAGGCTCAACTCACCTCTCGCAATATGAGT
70225122 TGATTTTTTTAGAAACATAAATTAAAAAAGG
131 TGATTTTTTTAGAAACATAAATTAAAAAAGG
* *
70225153 GAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTT
1 GAAATTGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAA--GTT
* *
70225218 TTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATG
64 TTGACAA-ACAAAAATTGAAAATACCTCAACGTGTCATAAGGCTCAACTCACCTCTCGCAATATG
70225282 AGTTGATTTT
128 AGTTGATTTT
70225292 GACAAACAAA
Statistics
Matches: 123, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
161 54 0.44
162 2 0.02
163 67 0.54
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (161 bp):
GAAATTGAAAACACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAAGTTTT
GACAAACAAAAATTGAAAATACCTCAACGTGTCATAAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTTAGAAACATAAATTAAAAAAGG
Found at i:70225496 original size:381 final size:368
Alignment explanation
Indices: 70224102--70225657 Score: 1764
Period size: 381 Copynumber: 4.2 Consensus size: 368
70224092 AAATTGAAGA
* * * * *
70224102 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--
* * * *
70224165 TTTTTGA-AAGACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
64 -TTTTGACAA-ACAAAAATT-AAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAA
* * * * * * *
70224228 TACGAGTTGA-TTTTTGACAAACAAAAATTGAAATTACCTC-A-GCGTCTTGAGGTTCAACTCAC
126 TATGAGCTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAC
* * * * * *
70224290 CTCTCGCAATATGAGCTGATTTTTTTGA-AAGACAGAAATTGAAAATACCTCAACGTGTCTTGAG
191 CTCTCGCAATATGAGTTGA--GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCGTGTCATGAG
* * * ** *
70224354 GCTCAACTCAGCTCTCGCAATATGAGTTGA--TTTTTGACAAACAA-AAATTGAAATTACCTTAG
253 GCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGA-AAAAAAGAAATTGAAAACACCTCAG
* * * * *
70224416 C--GTCTTGAGGTTCGACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAA
317 CGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTGAAAG
* *
70224467 ACAGAAATTGAAAATACCTTAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAGT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
* * * *
70224532 TTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
65 TTTGACAAACAAAAATTAAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATG
* * * *
70224597 AGTTGATTTTTTTAGATACATAAATTAAAAAACGGAAATTGAAAACACCTC-A-GCGTCTTGAGG
130 AGCTGA-TTTTTT-G------------AAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
* * * * * * *
70224660 TTCAACTCACCTCTCGCAATATGAGCTAATTTTTTGA-AAGACAGAAATTGAAAATACCTCAACG
181 CTCAACTCACCTCTCGCAATATGAGTTGA-GTTTTGACAA-ACAAAAATTGAAATTACCTCAGCG
* * * * *
70224724 TGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTGACAAACA-AAATT-AAAA
244 TGTCATGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAAAAGAAATTGAAAA
* *
70224784 TTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAG
309 -CACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAG
*
70224843 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
70224908 TTGACAAACAAAAATTGAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGA
66 TTGACAAACAAAAATTAAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGA
* *
70224973 GTTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTC
131 GCTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
70225038 GCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACT
196 GCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACT
* *
70225103 CACTTCTCGCAATATGAGTTGATTTTTTTAGAAACATAAATTAAAAAAGGGAAATTGAAAACACC
261 CACCTATCGCAATATGAGTTGATTTTTTT-G--------A--AAAAAA--GAAATTGAAAACACC
* *
70225168 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAG
313 TCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTTTGAAAG
*
70225225 ACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* *
70225290 TTGACAAAC-AAAATTAAAATTACCTCAG-C-GTCTTGAGGTTCAACTCACCTCTCGCAATATGA
66 TTGACAAACAAAAATTAAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGA
* *
70225352 GCTGATTTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTC
131 GCTGA--TTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
* *
70225417 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAA
194 TCGCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAA
* * *
70225482 CTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCT
259 CTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAAAAGAAATTGAAAACACCTCAGCGTGTCT
* * *
70225547 TGAGGCTCAACTCACCTTTCGCAATATGAGTTGA-GTTTTGACAA-
324 TGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGA-AAG
* * * * *
70225591 ACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATT
1 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
70225656 TT
66 TT
70225658 TTTAGAAACA
Statistics
Matches: 1062, Mismatches: 82, Indels: 93
0.86 0.07 0.08
Matches are distributed among these distances:
361 22 0.02
362 64 0.06
363 37 0.03
364 3 0.00
365 81 0.08
366 71 0.07
367 43 0.04
368 55 0.05
370 5 0.00
372 1 0.00
373 1 0.00
374 7 0.01
375 69 0.06
376 78 0.07
377 51 0.05
378 6 0.01
379 120 0.11
380 65 0.06
381 200 0.19
382 83 0.08
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (368 bp):
ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTGACAAACAAAAATTAAAATTACCTCAGCCTGTCTTGAGGCTCAACTCACCTATCGCAATATGA
GCTGATTTTTTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGAGTTTTGACAAACAAAAATTGAAATTACCTCAGCGTGTCATGAGGCTCAACT
CACCTATCGCAATATGAGTTGATTTTTTTGAAAAAAAGAAATTGAAAACACCTCAGCGTGTCTTG
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTTGAAAG
Found at i:70225548 original size:148 final size:147
Alignment explanation
Indices: 70225154--70225678 Score: 824
Period size: 148 Copynumber: 3.6 Consensus size: 147
70225144 TAAAAAAGGG
** *
70225154 AAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
* *
70225219 TGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTAAGGCTCAACTCACCTCTCGCAATATGAG
66 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
70225284 TTGATTTTGACAAAC-A
131 TTGATTTTGACAAACAA
* * *
70225300 AAATTAAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGA-TTTTT
* *
70225363 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAGCTCTCGCAATATGA
65 TTGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
70225428 GTTGATTTTTGACAAACAA
130 GTTGA-TTTTGACAAACAA
* * *
70225447 AAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
*
70225512 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAG
66 TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
70225577 TTGAGTTTTGACAAACAA
131 TTGA-TTTTGACAAACAA
* *
70225595 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
* * *
70225660 T-AGAAACATAAATTAAAAA
66 TGAAAAACAGAAATTGAAAA
70225679 AAACAGAAAT
Statistics
Matches: 352, Mismatches: 22, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
144 35 0.10
145 73 0.21
146 27 0.08
147 34 0.10
148 148 0.42
149 35 0.10
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.30
Consensus pattern (147 bp):
AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTT
TGAAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTGACAAACAA
Found at i:70225888 original size:14 final size:13
Alignment explanation
Indices: 70225852--70225898 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
70225842 TTGATTTTTG
70225852 AAAAATAGAAATT
1 AAAAATAGAAATT
*
70225865 AAAAGTAGAAATT
1 AAAAATAGAAATT
*
70225878 GAAAAACAGAAATT
1 -AAAAATAGAAATT
70225892 AAAAATA
1 AAAAATA
70225899 CCTCGGCATG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.68, C:0.02, G:0.11, T:0.19
Consensus pattern (13 bp):
AAAAATAGAAATT
Found at i:70225917 original size:100 final size:101
Alignment explanation
Indices: 70225677--70225968 Score: 397
Period size: 100 Copynumber: 2.9 Consensus size: 101
70225667 ATAAATTAAA
* * *
70225677 AAAAACAGAAATTGAAAACACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGCT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * *
70225742 AATTTTTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
66 GA-TTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
*
70225779 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAGATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
70225844 GATTTTTGAAAAATAGAAATT-AAAAGTAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * * *
70225879 AAAAACAGAAATTAAAAATACCTCGGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
70225944 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAACAGAAATTGAAA
70225969 TTACCTTAGC
Statistics
Matches: 168, Mismatches: 21, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
100 87 0.52
101 19 0.11
102 62 0.37
ACGTcount: A:0.40, C:0.19, G:0.17, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:70225974 original size:73 final size:74
Alignment explanation
Indices: 70225876--70226042 Score: 203
Period size: 73 Copynumber: 2.3 Consensus size: 74
70225866 AAAGTAGAAA
* * * * *
70225876 TTGAAAAACAGAAATTAAAAATACCTCGGCATGCCCCGAGGCTCAACTCACCTCTCACAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATAA
70225941 GTTGA-TTT
66 GTTGATTTT
* * * * * ** *
70225949 TTGAAAAGCATAAATTGAAATTACCTTAGCATGTCCTGAGGCTTAACTCACCTCTTGCATTATAA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATAA
70226014 GTTGATTTT
66 GTTGATTTT
70226023 TTGAAAAGCATAAA-TGAAAA
1 TTGAAAAGCATAAATTGAAAA
70226043 AACGAAAATT
Statistics
Matches: 79, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
73 62 0.78
74 17 0.22
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCATGCCCCGAGGCTCAACTCACCTCTCACAATATAA
GTTGATTTT
Found at i:70227047 original size:73 final size:73
Alignment explanation
Indices: 70226948--70227123 Score: 302
Period size: 73 Copynumber: 2.4 Consensus size: 73
70226938 TGTGTTAATC
*
70226948 AAGACGCCCTTTTT-GGGTTTTCACCTTGATCCCTCTCTCTTTTTCTTTTTTCTTTTCTTTTCTC
1 AAGATGCCCTTTTTCGGGTTTTCACCTTGATCCCTCTCTCTTTTTCTTTTTTCTTTTCTTTTCTC
70227012 -TTTTTTT
66 TTTTTTTT
*
70227019 AAGATGCCTTTTTTTCGGGTTTTCACCTTGATCCCTCTCTCTTTTTCTTTTTTCTTTTCTTTTCT
1 AAGATGCC-CTTTTTCGGGTTTTCACCTTGATCCCTCTCTCTTTTTCTTTTTTCTTTTCTTTTCT
70227084 CTTTTTTTT
65 CTTTTTTTT
*
70227093 AAGATGCCCTTTTTCGGGTTTTCATCTTGAT
1 AAGATGCCCTTTTTCGGGTTTTCACCTTGAT
70227124 TTTCCTTTTT
Statistics
Matches: 98, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
71 7 0.07
72 5 0.05
73 71 0.72
74 15 0.15
ACGTcount: A:0.09, C:0.23, G:0.10, T:0.58
Consensus pattern (73 bp):
AAGATGCCCTTTTTCGGGTTTTCACCTTGATCCCTCTCTCTTTTTCTTTTTTCTTTTCTTTTCTC
TTTTTTTT
Found at i:70237479 original size:250 final size:250
Alignment explanation
Indices: 70237038--70237544 Score: 960
Period size: 250 Copynumber: 2.0 Consensus size: 250
70237028 TTCAGGGGAA
* *
70237038 TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACGCAGGTACGAATGTATCCCGA
1 TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTACAAATGTATCCCGA
70237103 AAGCGATCCACTATCCTATACGGAGGTGAAGACCTCACAAAGGAGTAGTTTTTTACTTCCACTTA
66 AAGCGATCCACTATCCTATACGGAGGTGAAGACCTCACAAAGGAGTAGTTTTTTACTTCCACTTA
70237168 AGAGGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTT
131 AGAGGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTT
* *
70237233 AAAGCAAGCATATTATGAAGAGAGTCGTGAAAATAACAGACAACATGCAATGTAG
196 AAAGCAAGCATATTATGAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
*
70237288 TACATTTCCCTATGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTACAAATGTATCCCGA
1 TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTACAAATGTATCCCGA
70237353 AAGCGATCCACTATCCTATACGGAGGTGAAGACCTCACAAAGGAGTAGTTTTTTACTTCCACTTA
66 AAGCGATCCACTATCCTATACGGAGGTGAAGACCTCACAAAGGAGTAGTTTTTTACTTCCACTTA
70237418 AGAGGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTT
131 AGAGGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTT
70237483 AAAGCAAGCATATTATGAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
196 AAAGCAAGCATATTATGAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
*
70237538 TAAATTT
1 TACATTT
70237545 AAAATCGATT
Statistics
Matches: 251, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
250 251 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.21
Consensus pattern (250 bp):
TACATTTCCCTACGGCTATACGGAGGTGAAAACCCCACGAAGACACAGGTACAAATGTATCCCGA
AAGCGATCCACTATCCTATACGGAGGTGAAGACCTCACAAAGGAGTAGTTTTTTACTTCCACTTA
AGAGGGTGAAATCGACCAATAATGCGATGCGATATGCAAAGATACCTCAAAGAATTAAACCACTT
AAAGCAAGCATATTATGAAGAGAGTCGCGAAAATAACAGACAACATGCAATGCAG
Found at i:70238545 original size:22 final size:24
Alignment explanation
Indices: 70238487--70238554 Score: 77
Period size: 25 Copynumber: 2.9 Consensus size: 24
70238477 ATGTATGAAA
* *
70238487 AAAAATATGTACATAATATAGTGT
1 AAAAATATATACATAATATAATGT
*
70238511 AAAAAATACATACATAATATAAT-T
1 -AAAAATATATACATAATATAATGT
*
70238535 -AAAATATATACATAAGATAA
1 AAAAATATATACATAATATAA
70238555 CATGTAGAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
22 18 0.47
24 1 0.03
25 19 0.50
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.29
Consensus pattern (24 bp):
AAAAATATATACATAATATAATGT
Found at i:70238621 original size:23 final size:25
Alignment explanation
Indices: 70238570--70238699 Score: 82
Period size: 23 Copynumber: 5.6 Consensus size: 25
70238560 AGAAAAAAAA
*
70238570 ATATATAAATAATATAGTATTAAAG
1 ATATATACATAATATAGTATTAAAG
* *
70238595 ATATATACATAAAATAGTA-T-AAT
1 ATATATACATAATATAGTATTAAAG
* * *
70238618 ATATATACGTAATATAGAATT-TAG
1 ATATATACATAATATAGTATTAAAG
* *
70238642 A-ATAAACCT-A-ATA-TATTAAA-
1 ATATATACATAATATAGTATTAAAG
* *
70238662 ATAATATATATAATATAATATTAAA-
1 AT-ATATACATAATATAGTATTAAAG
*
70238687 AAATATA-ATAATA
1 ATATATACATAATA
70238700 ACAAAAAAAA
Statistics
Matches: 82, Mismatches: 16, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
20 4 0.05
21 4 0.05
22 6 0.07
23 31 0.38
24 12 0.15
25 25 0.30
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (25 bp):
ATATATACATAATATAGTATTAAAG
Found at i:70238680 original size:27 final size:23
Alignment explanation
Indices: 70238654--70238699 Score: 74
Period size: 25 Copynumber: 1.9 Consensus size: 23
70238644 TAAACCTAAT
70238654 ATATTAAAATAATATATATAATATA
1 ATATTAAAA-AATATA-ATAATATA
70238679 ATATTAAAAAATATAATAATA
1 ATATTAAAAAATATAATAATA
70238700 ACAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 6 0.29
24 6 0.29
25 9 0.43
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (23 bp):
ATATTAAAAAATATAATAATATA
Found at i:70239021 original size:16 final size:16
Alignment explanation
Indices: 70238983--70239021 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
70238973 CTCCAAAAAA
*
70238983 AAAAACTAGCCTCTCC
1 AAAAACTAGCCTCTAC
*
70238999 AAAAACTAGCCTTTAC
1 AAAAACTAGCCTCTAC
*
70239015 AATAACT
1 AAAAACT
70239022 CTTCTCCTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (16 bp):
AAAAACTAGCCTCTAC
Found at i:70239216 original size:30 final size:30
Alignment explanation
Indices: 70239180--70239274 Score: 142
Period size: 30 Copynumber: 3.3 Consensus size: 30
70239170 AGGTACAAGT
*
70239180 GGTGGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
70239210 GGTGGTGGAACAAGTGTGGCTAGTGGAGTA
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
*
70239240 ---GGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
70239267 GGTGGTGG
1 GGTGGTGG
70239275 CAAAGGCTAG
Statistics
Matches: 58, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
27 25 0.43
30 33 0.57
ACGTcount: A:0.20, C:0.06, G:0.49, T:0.24
Consensus pattern (30 bp):
GGTGGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:70239251 original size:27 final size:27
Alignment explanation
Indices: 70239183--70239271 Score: 124
Period size: 27 Copynumber: 3.2 Consensus size: 27
70239173 TACAAGTGGT
*
70239183 GGTGGAGCAAGTGTGGCTAATGGAGTA
1 GGTGGAGCAAGTGTGGCTAGTGGAGTA
*
70239210 GGTGGTGGAACAAGTGTGGCTAGTGGAGTA
1 ---GGTGGAGCAAGTGTGGCTAGTGGAGTA
*
70239240 GGTGGAGCAAGTGTGGCTAGTGGAGTT
1 GGTGGAGCAAGTGTGGCTAGTGGAGTA
70239267 GGTGG
1 GGTGG
70239272 TGGCAAAGGC
Statistics
Matches: 55, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
27 30 0.55
30 25 0.45
ACGTcount: A:0.21, C:0.07, G:0.48, T:0.24
Consensus pattern (27 bp):
GGTGGAGCAAGTGTGGCTAGTGGAGTA
Found at i:70243092 original size:9 final size:10
Alignment explanation
Indices: 70243072--70243096 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
70243062 TCTTATTTAA
70243072 TTAAATTTTT
1 TTAAATTTTT
70243082 TTAAATTTTT
1 TTAAATTTTT
70243092 TTAAA
1 TTAAA
70243097 AAAGGATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTAAATTTTT
Found at i:70243227 original size:3 final size:3
Alignment explanation
Indices: 70243219--70243273 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
70243209 CTTTTTCTCT
70243219 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70243267 TTA TTA T
1 TTA TTA T
70243274 CTCTCTTTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:70261017 original size:19 final size:19
Alignment explanation
Indices: 70260979--70261016 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
70260969 TAAAGTAAAG
*
70260979 TAAATAATAATACTATATA
1 TAAAAAATAATACTATATA
70260998 TAAAAAAT-ATA-TATATA
1 TAAAAAATAATACTATATA
70261015 TA
1 TA
70261017 TGTATGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 8 0.44
18 3 0.17
19 7 0.39
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAAAAATAATACTATATA
Found at i:70261265 original size:3 final size:3
Alignment explanation
Indices: 70261257--70261326 Score: 79
Period size: 3 Copynumber: 22.0 Consensus size: 3
70261247 AATAGGGGTG
*
70261257 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA CA-A ACA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA
70261302 ATA CATA TATA TATA TATA ATA ATA
1 ATA -ATA -ATA -ATA -ATA ATA ATA
70261327 GTAGTCAGAA
Statistics
Matches: 62, Mismatches: 2, Indels: 6
0.89 0.03 0.09
Matches are distributed among these distances:
2 1 0.02
3 46 0.74
4 15 0.24
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:70261471 original size:24 final size:24
Alignment explanation
Indices: 70261399--70261478 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 24
70261389 GAGAGGGTAT
* *
70261399 ATATAATATAATAATATAAATAATA
1 ATATAA-ATAATAGTAAAAATAATA
*
70261424 ATAT--ATACATGAG-AAATAAAAATA
1 ATATAAATA-AT-AGTAAA-AATAATA
70261448 ATATAAATAATAGTAAAAATAATA
1 ATATAAATAATAGTAAAAATAATA
*
70261472 AAATAAA
1 ATATAAA
70261479 AAAAATAAAA
Statistics
Matches: 44, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
22 3 0.07
23 4 0.09
24 25 0.57
25 9 0.20
26 3 0.07
ACGTcount: A:0.66, C:0.01, G:0.04, T:0.29
Consensus pattern (24 bp):
ATATAAATAATAGTAAAAATAATA
Found at i:70261480 original size:14 final size:14
Alignment explanation
Indices: 70261437--70261488 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
70261427 TATACATGAG
* *
70261437 AAATAAAAATAATAT
1 AAAT-AAAATAAAAA
*
70261452 AAATAATAGTAAAAA
1 AAATAA-AATAAAAA
*
70261467 TAATAAAATAAAAA
1 AAATAAAATAAAAA
70261481 AAATAAAA
1 AAATAAAA
70261489 CAAAGCTCTC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 16 0.53
15 14 0.47
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (14 bp):
AAATAAAATAAAAA
Found at i:70262021 original size:30 final size:30
Alignment explanation
Indices: 70261987--70262102 Score: 171
Period size: 30 Copynumber: 3.9 Consensus size: 30
70261977 ATTTGATGGT
70261987 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
* * * *
70262017 GTAGGTGCAAGTGGGGGGCAATGTGGTAGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
*
70262047 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
70262077 GTAGGTGCAAGTGGGA-AGCAAGGTGG
1 GTAGGTGCAAGTGGGAGA-CAAGGTGG
70262103 CTAGGGTTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.25, C:0.07, G:0.51, T:0.17
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGACAAGGTGGTGGA
Found at i:70262729 original size:43 final size:42
Alignment explanation
Indices: 70262667--70263464 Score: 304
Period size: 43 Copynumber: 18.6 Consensus size: 42
70262657 CGCCTTCGAT
* * *
70262667 CTGTTTCCCTACTACTTAGGGTGCTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGC
* * * ** * *
70262710 CTGTTACCCTACTGTTTAGGGGTTAAG-GCTTGTCACCTTCGAT
1 CTGTTACCCTACTGCTTAGGGGTTAAGATC-TGTAAATTTAG-C
* *
70262753 CTGTTTCCCTACTGTTTAGGGGGTTTAAGATCTGTAAATCTTCAGC
1 CTGTTACCCTACTGCTTA-GGGG-TTAAGATCTGTAAAT-TT-AGC
* ** *
70262799 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCTTGTCACCTTT-GAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATC-TGT-AAATTTAG-C
* * *
70262843 CTGTTTCCCTACTGTTTA--GG----G-TCTGTAAATTTAAC
1 CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
* ** * *
70262878 CTGTTACCCTACTGCTTAGGGGTTTAAG-GCT-TATTGTCTTTGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTA-AAT-TTAG-C
* * *
70262922 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTATAAATTCAGC
1 CTGTTACCCTACTGCTT-AGGGGTTAAGATCTGTAAATTTAGC
* * ** ** **** * *
70262965 CTGTTACCTTACTGCTTAGGGGTTTATGGCCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAATTTAG-C
* * *
70263009 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* ** **** * *
70263052 CTGTTACCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTCGAT
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAG-C
* * *
70263096 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAAC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* ** ** * * *
70263139 TTGTTACCCTACTGCTTAGGGGTTTAAGGCCCAT-CATCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGATCTGTAAAT-TTAG-C
*
70263183 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* * *
70263226 CTGCTACCCTACTGCTTAGGGGGTTAAGATCTATAAATTCAGC
1 CTGTTACCCTACTGCTTA-GGGGTTAAGATCTGTAAATTTAGC
* * * * ** * *
70263269 TTATTACCCTACTGTTTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-TCTGTAAAT-TTAG-C
* * * * * *
70263313 TTGCT-CCACTACTGCTTAGGGAGATAAGATCTG-CAATTTGGT
1 CTGTTACC-CTACTGCTTAGGG-GTTAAGATCTGTAAATTTAGC
* * ** * *
70263355 TTGTTACCCTACTGCTTAGGGGTTTAAGACCCT-T-CGTCTTCGAT
1 CTGTTACCCTACTGCTTAGGGG-TTAAGA-TCTGTAAAT-TTAG-C
* * * *
70263399 CTGTTTCCCTACTGCATAGGAGGTTAAGATCTGGAAATTCAGC
1 CTGTTACCCTACTGCTTAGG-GGTTAAGATCTGTAAATTTAGC
70263442 C-GTTACCCTACTGCTTAGGGGTT
1 CTGTTACCCTACTGCTTAGGGGTT
70263465 TAAGGCCCTT
Statistics
Matches: 548, Mismatches: 157, Indels: 102
0.68 0.19 0.13
Matches are distributed among these distances:
35 20 0.04
36 3 0.01
37 4 0.01
41 8 0.01
42 74 0.14
43 196 0.36
44 173 0.32
45 46 0.08
46 23 0.04
47 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (42 bp):
CTGTTACCCTACTGCTTAGGGGTTAAGATCTGTAAATTTAGC
Found at i:70262730 original size:87 final size:87
Alignment explanation
Indices: 70262627--70263253 Score: 831
Period size: 87 Copynumber: 7.3 Consensus size: 87
70262617 TTCAGCTTGG
* * *
70262627 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTACTTAGGGTGCT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
70262692 AAGATCTGTAAATTTAGCCTGT
66 AAGATCTGTAAATTTAGCCTGT
* *** * *
70262714 TACCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTCGATCTGTTTCCCTACTGTTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGG-T
70262778 TAAGATCTGTAAATCTTCAGCCTGT
65 TAAGATCTGTAAAT-TT-AGCCTGT
*** * * *
70262803 TACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTTGATCTGTTTCCCTACTGTTTA---GG--
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
*
70262863 --G-TCTGTAAATTTAACCTGT
66 AAGATCTGTAAATTTAGCCTGT
** * * * *
70262882 TACCCTACTGCTTAGGGGTTTAAGGCTTATTGTCTTTGATCTGTTTCCCTACTGCTTAAGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* *
70262947 AAGATCTATAAATTCAGCCTGT
66 AAGATCTGTAAATTTAGCCTGT
* * *
70262969 TACCTTACTGCTTAGGGGTTTATGGCCCATCGCCTTCGATCTATTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
*
70263034 AAGATCTGTAAATTCAGCCTGT
66 AAGATCTGTAAATTTAGCCTGT
* *
70263056 TACCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
* * *
70263121 AAGATCTGTAAATTCAACTTGT
66 AAGATCTGTAAATTTAGCCTGT
**
70263143 TACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
1 TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
*
70263208 AAGATCTGTAAATTTAGCCTGC
66 AAGATCTGTAAATTTAGCCTGT
*
70263230 TACCCTACTGCTTAGGGGGTTAAG
1 TACCCTACTGCTTAGGGGTTTAAG
70263254 ATCTATAAAT
Statistics
Matches: 482, Mismatches: 46, Indels: 24
0.87 0.08 0.04
Matches are distributed among these distances:
79 59 0.12
80 2 0.00
81 9 0.02
82 3 0.01
86 38 0.08
87 307 0.64
88 2 0.00
89 24 0.05
90 38 0.08
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (87 bp):
TACCCTACTGCTTAGGGGTTTAAGGCCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTT
AAGATCTGTAAATTTAGCCTGT
Found at i:70262862 original size:44 final size:44
Alignment explanation
Indices: 70262710--70262863 Score: 170
Period size: 44 Copynumber: 3.5 Consensus size: 44
70262700 TAAATTTAGC
*
70262710 CTGTTACCCTACTGTTTAGGGG-TTAAGGCTTGTCACCTTCGAT
1 CTGTTACCCTACTGTTTAGGGGTTTAAGGCTTGTCACCTTTGAT
* * ** * *
70262753 CTGTTTCCCTACTGTTTAGGGGGTTTAA-GATCTGT-AAATCTTCAGC
1 CTGTTACCCTACTGTTTA-GGGGTTTAAGGCT-TGTCACCT-TTGA-T
*
70262799 CTGTTACCCTACTGCTTAGGGGTTTAAGGCTTGTCACCTTTGAT
1 CTGTTACCCTACTGTTTAGGGGTTTAAGGCTTGTCACCTTTGAT
*
70262843 CTGTTTCCCTACTGTTTAGGG
1 CTGTTACCCTACTGTTTAGGG
70262864 TCTGTAAATT
Statistics
Matches: 88, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
43 17 0.19
44 27 0.31
45 24 0.27
46 20 0.23
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.39
Consensus pattern (44 bp):
CTGTTACCCTACTGTTTAGGGGTTTAAGGCTTGTCACCTTTGAT
Found at i:70263024 original size:44 final size:44
Alignment explanation
Indices: 70262878--70263763 Score: 266
Period size: 44 Copynumber: 20.5 Consensus size: 44
70262868 TAAATTTAAC
* * * *** *
70262878 CTGTTACCCTACTGCTTAGGGGTTTAAGG-CTTATTGTCTTTGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTC-CATCAACTTCGAT
* * * * *
70262922 CTGTTTCCCTACTGCTTAAGGGGTTAAGATCTAT-AAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGA-T
* * * * * **
70262965 CTGTTACCTTACTGCTTAGGGGTTTATGGCCCATCGCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * ** * *
70263009 CTATTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-AGC
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGA-T
* **
70263052 CTGTTACCCTACTGCTTAGGGGGTTAAGGTCCATCGCCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* ** * *
70263096 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGT-AAATTC-AA
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * * *
70263138 CTTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGAT
1 C-TGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* ** * * * *
70263183 CTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTTAG-C
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * * * * *
70263226 CTGCTACCCTACTGCTTAGGGGGTTAAGATCTAT-AAATTC-AG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * ** * **
70263268 CT-TATTACCCTACTGTTTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGT-TT-CCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * * * * * *
70263313 TTG-CTCCACTACTGCTTAGGGAGATAAGAT-C-TGCAA-TTTGGT
1 CTGTTTCC-CTACTGCTTAGGGGGTTAAGGTCCAT-CAACTTCGAT
* * * ** * **
70263355 TTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * * * * *
70263399 CTGTTTCCCTACTGCATAGGAGGTTAAGAT-C-TGGAAATTC-AG
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCAT-CAACTTCGAT
* * * * * **
70263441 CCGTTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCATT-GAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAAC-TTCGAT
* * * * * *
70263485 CTG-CTCCACTACTGCTTAGGGAGATAAGAT-C-TGCAA-TTTGGT
1 CTGTTTCC-CTACTGCTTAGGGGGTTAAGGTCCAT-CAACTTCGAT
* * * *** * **
70263527 TTGTTACCCTACTGCTTAGGGGTTTAAAACCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
** * * * * * *
70263571 CT-ACTCCACTACTGCTTAGAGAGATAAGAT-C-TGCAA-TTTGGT
1 CTGTTTCC-CTACTGCTTAGGGGGTTAAGGTCCAT-CAACTTCGAT
* * ** * **
70263613 CTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * *** * * * *
70263657 CTG-CTCCACTACTTCTTAGGGAAATATGATCTA-CAA-TTCGGT
1 CTGTTTCC-CTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
* * * *
70263699 CTGTTACCCTACTGCTTAGGGGTTTAAGGCCCATCAACCTCGAT
1 CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
*
70263743 TTGTTTCCCTACTGCTTAGGG
1 CTGTTTCCCTACTGCTTAGGG
70263764 AGATAAGATC
Statistics
Matches: 590, Mismatches: 208, Indels: 88
0.67 0.23 0.10
Matches are distributed among these distances:
41 2 0.00
42 133 0.23
43 181 0.31
44 267 0.45
45 7 0.01
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (44 bp):
CTGTTTCCCTACTGCTTAGGGGGTTAAGGTCCATCAACTTCGAT
Found at i:70263157 original size:130 final size:128
Alignment explanation
Indices: 70263015--70263553 Score: 345
Period size: 130 Copynumber: 4.2 Consensus size: 128
70263005 CGATCTATTT
* *
70263015 CCCTACTGCTTAGGGGGTTAAGATCTGTAAATTC-AGCCTGTTACCCTACTGCTTAGGGGGTTAA
1 CCCTACTGCTTAGGGGTTTAAGACCTGTAAATTCGA-CCTGTTACCCTACTGCTTAGGGGGTTAA
* * *
70263079 GGTCCATCGCCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACTTGTT
65 GATCC-TCGCATT-GATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACTTGTT
70263144 A
128 A
* ** ** * *
70263145 CCCTACTGCTTAGGGGTTTAAGGCCCATCATCTTCGATCTGTTTCCCTACTGCTTAGGGGGTTAA
1 CCCTACTGCTTAGGGGTTTAAGACCTGT-AAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAA
* * * * * * *
70263210 GAT-CT-GTAAATTTAGCCTGCTACCCTACTGCTTAGGGGGTTAAGATCTATAAATTCAGCTTAT
65 GATCCTCG--CATTGA-TCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACTTGT
70263273 TA
127 TA
* * ** * * *
70263275 CCCTACTGTTTAGGGGTTTAAGACCCTTCGT--CTTCGATTTGCT-CCACTACTGCTTAGGGAGA
1 CCCTACTGCTTAGGGGTTTAAGA-CC-T-GTAAATTCGACCTGTTACC-CTACTGCTTAGGGGGT
* * * * * *
70263337 TAAGAT-CT-GCAATTTGGTTTGTTACCCTACTGCTTAGGGGTTTAAGACCCTTCGT--CTTCGA
62 TAAGATCCTCGC-A-TTGATCTGTTACCCTACTGCTTAGGGGGTTAAGA-TC-T-GTAAATTCAA
*
70263398 -TCTGTTT
122 CT-TGTTA
* * * *
70263405 CCCTACTGCATAGGAGG-TTAAGATCTGGAAATTC-AGCC-GTTACCCTACTGCTTAGGGGTTTA
1 CCCTACTGCTTAGG-GGTTTAAGACCTGTAAATTCGA-CCTGTTACCCTACTGCTTAGGGGGTTA
** * * * * ****
70263467 AGGCCCTTCGTCATTGATCTGCT-CCACTACTGCTTAGGGAGATAAGATCTG-CAATTTGGTTTG
64 AGATCC-TCG-CATTGATCTGTTACC-CTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACTTG
70263530 TTA
126 TTA
70263533 CCCTACTGCTTAGGGGTTTAA
1 CCCTACTGCTTAGGGGTTTAA
70263554 AACCCTTCGT
Statistics
Matches: 314, Mismatches: 66, Indels: 60
0.71 0.15 0.14
Matches are distributed among these distances:
127 4 0.01
128 47 0.15
129 43 0.14
130 177 0.56
131 39 0.12
132 3 0.01
133 1 0.00
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.35
Consensus pattern (128 bp):
CCCTACTGCTTAGGGGTTTAAGACCTGTAAATTCGACCTGTTACCCTACTGCTTAGGGGGTTAAG
ATCCTCGCATTGATCTGTTACCCTACTGCTTAGGGGGTTAAGATCTGTAAATTCAACTTGTTA
Found at i:70263362 original size:86 final size:86
Alignment explanation
Indices: 70263272--70263778 Score: 691
Period size: 86 Copynumber: 5.9 Consensus size: 86
70263262 ATTCAGCTTA
* *
70263272 TTACCCTACTGTTTAGGGGTTTAAGACCCTTCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGA
1 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
*
70263337 TAAGATCTGCAATTTGGTTTG
66 TAAGATCTGCAATTTGGTCTG
* *
70263358 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGTTTCC-CTACTGCATA-GGAG
1 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGGGA-
* * ** *
70263421 GTTAAGATCTGGAAATTCAG-CCG
64 GATAAGATCT-GCAATTTGGTCTG
*
70263444 TTACCCTACTGCTTAGGGGTTTAAGGCCCTTCGTCATT-GATCTGCTCCACTACTGCTTAGGGAG
1 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTC-TTCGATCTGCTCCACTACTGCTTAGGGAG
*
70263508 ATAAGATCTGCAATTTGGTTTG
65 ATAAGATCTGCAATTTGGTCTG
* * *
70263530 TTACCCTACTGCTTAGGGGTTTAAAACCCTTCGTCTTCGATCTACTCCACTACTGCTTAGAGAGA
1 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
70263595 TAAGATCTGCAATTTGGTCTG
66 TAAGATCTGCAATTTGGTCTG
* *
70263616 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTTCTTAGGGAAA
1 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
* * *
70263681 TATGATCTACAATTCGGTCTG
66 TAAGATCTGCAATTTGGTCTG
* * ** * * *
70263702 TTACCCTACTGCTTAGGGGTTTAAGGCCCATCAACCTCGATTTGTTTCC-CTACTGCTTAGGGAG
1 TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTG-CTCCACTACTGCTTAGGGAG
70263766 ATAAGATCTGCAA
65 ATAAGATCTGCAA
70263779 ATTCACTGAT
Statistics
Matches: 369, Mismatches: 43, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
85 14 0.04
86 338 0.92
87 17 0.05
ACGTcount: A:0.21, C:0.24, G:0.21, T:0.34
Consensus pattern (86 bp):
TTACCCTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
TAAGATCTGCAATTTGGTCTG
Found at i:70263717 original size:42 final size:42
Alignment explanation
Indices: 70263493--70263719 Score: 116
Period size: 42 Copynumber: 5.3 Consensus size: 42
70263483 ATCTGCTCCA
* * * *
70263493 CTACTGCTTAGGGAGATAAGATCTGCAATTTGGTTTGTTACC
1 CTACTGCTTAGGGAAATAAGATCTACAATTCGGTCTGTTACC
*** * * * ** * **
70263535 CTACTGCTTAGGGGTTTAAAACCCTTCGTCTTCGATCTACT-CC
1 CTACTGCTTAGGGAAATAAGA-TCTAC-AATTCGGTCTGTTACC
* * * *
70263578 ACTACTGCTTAGAGAGATAAGATCTGCAATTTGGTCTGTTACC
1 -CTACTGCTTAGGGAAATAAGATCTACAATTCGGTCTGTTACC
*** * * ** * *
70263621 CTACTGCTTAGGGGTTTAAGACCCTTCGTCTTCGATCTGCT-CC
1 CTACTGCTTAGGGAAATAAGA-TCTAC-AATTCGGTCTGTTACC
* *
70263664 ACTACTTCTTAGGGAAATATGATCTACAATTCGGTCTGTTACC
1 -CTACTGCTTAGGGAAATAAGATCTACAATTCGGTCTGTTACC
70263707 CTACTGCTTAGGG
1 CTACTGCTTAGGG
70263720 GTTTAAGGCC
Statistics
Matches: 128, Mismatches: 49, Indels: 16
0.66 0.25 0.08
Matches are distributed among these distances:
42 62 0.48
43 20 0.16
44 46 0.36
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.34
Consensus pattern (42 bp):
CTACTGCTTAGGGAAATAAGATCTACAATTCGGTCTGTTACC
Found at i:70270958 original size:3 final size:3
Alignment explanation
Indices: 70270934--70271016 Score: 59
Period size: 3 Copynumber: 27.3 Consensus size: 3
70270924 GTTTTATTTT
* *
70270934 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
70270977 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
70271017 ATATACCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
2 7 0.11
3 49 0.75
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:70270991 original size:21 final size:18
Alignment explanation
Indices: 70270938--70271020 Score: 87
Period size: 18 Copynumber: 4.4 Consensus size: 18
70270928 TATTTTTTAT
* *
70270938 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
70270957 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
70270975 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
70270996 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
70271013 TTATATAT
1 TT-TATAT
70271021 ACCCTCTCCA
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
17 4 0.07
18 26 0.46
19 9 0.16
20 5 0.09
21 12 0.21
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:70271003 original size:12 final size:12
Alignment explanation
Indices: 70270927--70271016 Score: 78
Period size: 12 Copynumber: 7.3 Consensus size: 12
70270917 GAGCTTTGTT
* *
70270927 TTATTTTTTATT
1 TTATTATTTATA
*
70270939 TTATTATTTTTA
1 TTATTATTTATA
*
70270951 CTATTATTTATA
1 TTATTATTTATA
70270963 TTATTA-TTATTA
1 TTATTATTTA-TA
70270975 TT-TCTCATGTATATA
1 TTAT-T-AT-T-TATA
70270990 TTATTATTTATA
1 TTATTATTTATA
70271002 TTATTA-TTATA
1 TTATTATTTATA
70271013 TTAT
1 TTAT
70271017 ATATACCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 15
0.76 0.07 0.17
Matches are distributed among these distances:
11 13 0.20
12 39 0.60
13 2 0.03
14 2 0.03
15 6 0.09
16 3 0.05
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (12 bp):
TTATTATTTATA
Found at i:70271096 original size:3 final size:3
Alignment explanation
Indices: 70271088--70271142 Score: 60
Period size: 3 Copynumber: 18.0 Consensus size: 3
70271078 TATTTCTGAC
*
70271088 TAT TAT TAT TA- TAT ATAT GTAT TAT TGT T-T GTAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT
70271134 TAT TAT TAT
1 TAT TAT TAT
70271143 CACCCCTATT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
2 3 0.07
3 36 0.78
4 7 0.15
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:70278118 original size:30 final size:30
Alignment explanation
Indices: 70278084--70278169 Score: 154
Period size: 30 Copynumber: 2.9 Consensus size: 30
70278074 AAAACCCTAG
70278084 CCACCTTGCCTCCCACTTGCACCTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
*
70278114 CCACCTTGCCTCCCACTTGCACTTACTCCA
1 CCACCTTGCCTCCCACTTGCACCTACTCCA
*
70278144 CCACCTTGTCTCCCACTTGCACCTAC
1 CCACCTTGCCTCCCACTTGCACCTAC
70278170 ACCATCAAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.16, C:0.51, G:0.07, T:0.26
Consensus pattern (30 bp):
CCACCTTGCCTCCCACTTGCACCTACTCCA
Found at i:70278685 original size:3 final size:3
Alignment explanation
Indices: 70278674--70278889 Score: 71
Period size: 3 Copynumber: 70.0 Consensus size: 3
70278664 TTTTATTTTT
* *
70278674 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
70278717 TCTCA TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA -TA TATA
1 T-T-A T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA
* * * * *
70278762 CCCTC TCTA -TA TTTA TT- TATA TTA TTA CTA TCA TTA TTG TTA CTT-
1 --TTA T-TA TTA -TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA -TTA
* * *
70278807 CTA TTA TT- TT- TTA TT- TCTGA ATA CTA TTA TTA TATA TATA TGTA
1 TTA TTA TTA TTA TTA TTA T-T-A TTA TTA TTA TTA T-TA T-TA T-TA
*
70278851 TTA TTG TT- TGTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
70278890 ATATCACCCC
Statistics
Matches: 163, Mismatches: 23, Indels: 54
0.68 0.10 0.22
Matches are distributed among these distances:
2 19 0.12
3 114 0.70
4 27 0.17
5 3 0.02
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:70278731 original size:21 final size:18
Alignment explanation
Indices: 70278678--70278889 Score: 97
Period size: 18 Copynumber: 11.8 Consensus size: 18
70278668 ATTTTTTTAT
* *
70278678 TTTATTATTTTTACTATTA
1 TTTA-TATTATTATTATTA
70278697 TTTATATTATTATTATTA
1 TTTATATTATTATTATTA
*
70278715 TTTCTCATGTATATATTATTA
1 TTTAT-AT-TAT-TATTATTA
70278736 TTTATATTATTATTA-TA
1 TTTATATTATTATTATTA
* *
70278753 -TTATATATACCCTCTCTA-TA
1 TTTATAT-TA--TTAT-TATTA
70278773 TTTAT-TTA-TATTATTA
1 TTTATATTATTATTATTA
* * *
70278789 ---CTATCATTATTGTTA
1 TTTATATTATTATTATTA
* *
70278804 CTTCTATTATT-TT-TTA
1 TTTATATTATTATTATTA
* * *
70278820 TTTCTGAATACTATTATTA
1 TTTAT-ATTATTATTATTA
* *
70278839 TATATA-TATGTATTATTG
1 TTTATATTAT-TATTATTA
*
70278857 TTTGTATTATTATTATTA
1 TTTATATTATTATTATTA
70278875 -TTATTATTATTATTA
1 TTTA-TATTATTATTA
70278890 ATATCACCCC
Statistics
Matches: 151, Mismatches: 22, Indels: 41
0.71 0.10 0.19
Matches are distributed among these distances:
13 1 0.01
14 2 0.01
15 9 0.06
16 17 0.11
17 14 0.09
18 60 0.40
19 22 0.15
20 10 0.07
21 16 0.11
ACGTcount: A:0.30, C:0.07, G:0.03, T:0.61
Consensus pattern (18 bp):
TTTATATTATTATTATTA
Found at i:70279093 original size:39 final size:41
Alignment explanation
Indices: 70279014--70279111 Score: 105
Period size: 39 Copynumber: 2.4 Consensus size: 41
70279004 ATGTATATAT
*
70279014 ATATTTTTATATATAGTATTGTTTTTTATTACTTTAATTTA
1 ATATTTTTATATATAGTATTGTTTTTTATTACTATAATTTA
*
70279055 ATATTTTTAT-TATA-T-TTGCTTTTTGTATTTCTAT-ATTTA
1 ATATTTTTATATATAGTATTG-TTTTT-TATTACTATAATTTA
* *
70279094 TTATTATTATATAGTAGT
1 ATATTTTTATATA-TAGT
70279112 GTGTATTTCT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
38 3 0.06
39 19 0.40
40 13 0.27
41 12 0.25
42 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.06, T:0.63
Consensus pattern (41 bp):
ATATTTTTATATATAGTATTGTTTTTTATTACTATAATTTA
Found at i:70284315 original size:3 final size:3
Alignment explanation
Indices: 70284302--70284381 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
70284292 GAGGGTATAT
70284302 ATA AT- ATA ATA ATA AT- ATAA ATA ATA ATA TATA CATGA GA-A ATA
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA -ATA -AT-A -ATA ATA
* *
70284346 ATA ATA AT- ATAA ATA ATA GTA AAA ATA ATA A-A ATA A
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA ATA A
70284382 AAAAAATAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 9 0.15
3 42 0.68
4 9 0.15
5 2 0.03
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:70284326 original size:12 final size:12
Alignment explanation
Indices: 70284302--70284382 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
70284292 GAGGGTATAT
70284302 ATAATAT-AATA
1 ATAATATAAATA
70284313 ATAATATAAATA
1 ATAATATAAATA
*
70284325 ATAATATATACATG
1 ATAATATA-A-ATA
*
70284339 AGAA-AT-AATA
1 ATAATATAAATA
70284349 ATAATATAAATA
1 ATAATATAAATA
* *
70284361 ATAGTAAAAATA
1 ATAATATAAATA
*
70284373 ATAAAATAAA
1 ATAATATAAA
70284383 AAAAATAAAA
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 5 0.09
11 10 0.18
12 33 0.59
13 3 0.05
14 5 0.09
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (12 bp):
ATAATATAAATA
Found at i:70284328 original size:18 final size:18
Alignment explanation
Indices: 70284298--70284377 Score: 67
Period size: 18 Copynumber: 4.4 Consensus size: 18
70284288 TGGAGAGGGT
70284298 ATATATAAT-ATAATAATA
1 ATATA-AATAATAATAATA
70284316 ATATAAATAATAATATATA
1 ATATAAATAATAATA-ATA
* *
70284335 CAT-GAGA-AATAATAATA
1 -ATATAAATAATAATAATA
* *
70284352 ATATAAATAATAGTAAAA
1 ATATAAATAATAATAATA
70284370 ATAATAAA
1 AT-ATAAA
70284378 ATAAAAAAAA
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 2 0.04
17 8 0.16
18 28 0.56
19 10 0.20
20 2 0.04
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (18 bp):
ATATAAATAATAATAATA
Found at i:70284378 original size:9 final size:9
Alignment explanation
Indices: 70284302--70284390 Score: 56
Period size: 9 Copynumber: 9.4 Consensus size: 9
70284292 GAGGGTATAT
70284302 ATAATATAATA
1 ATAATA-AA-A
*
70284313 ATAATATAA
1 ATAATAAAA
*
70284322 ATAATAATAT
1 ATAATAA-AA
*
70284332 ATACATGAGAA
1 ATA-AT-AAAA
*
70284343 ATAATAATA
1 ATAATAAAA
70284352 AT-ATAAATA
1 ATAATAAA-A
*
70284361 ATAGTAAAA
1 ATAATAAAA
70284370 ATAAT-AAA
1 ATAATAAAA
*
70284378 ATAAAAAAA
1 ATAATAAAA
70284387 ATAA
1 ATAA
70284391 AACAAAGCTC
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
8 11 0.18
9 26 0.43
10 11 0.18
11 12 0.20
12 1 0.02
ACGTcount: A:0.67, C:0.01, G:0.03, T:0.28
Consensus pattern (9 bp):
ATAATAAAA
Found at i:70284920 original size:30 final size:30
Alignment explanation
Indices: 70284886--70284970 Score: 127
Period size: 30 Copynumber: 2.9 Consensus size: 30
70284876 ATTTGATGGT
*
70284886 GTAGGTGCAAGTGGGAGATAAGGTGGTAGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTAGA
* *
70284916 GTAGGTGCAAGTGGGAGGCAAGGTGGTGGA
1 GTAGGTGCAAGTGGGAGACAAGGTGGTAGA
*
70284946 GTAGGTGCAAGTGGAAG-CAAGGTGG
1 GTAGGTGCAAGTGGGAGACAAGGTGG
70284971 CTAGGGTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 8 0.16
30 43 0.84
ACGTcount: A:0.27, C:0.06, G:0.49, T:0.18
Consensus pattern (30 bp):
GTAGGTGCAAGTGGGAGACAAGGTGGTAGA
Found at i:70286564 original size:28 final size:28
Alignment explanation
Indices: 70286532--70286586 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
70286522 AGGTTGTAAA
70286532 AGAGCCTATTTATAGGCTAAATTCATAT
1 AGAGCCTATTTATAGGCTAAATTCATAT
70286560 AGAGCCTATTTATAGGCTAAATTCATA
1 AGAGCCTATTTATAGGCTAAATTCATA
70286587 GGTCAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (28 bp):
AGAGCCTATTTATAGGCTAAATTCATAT
Found at i:70289847 original size:33 final size:33
Alignment explanation
Indices: 70289810--70289883 Score: 103
Period size: 33 Copynumber: 2.2 Consensus size: 33
70289800 ATAATATCAT
* * *
70289810 ATAATATCCCATTAGGAATTAAATTGTTAATAG
1 ATAATATCCCATTAGGAATTAAATTGCTAAGAA
* *
70289843 ATAATATCTCATTAGGAATTAATTTGCTAAGAA
1 ATAATATCCCATTAGGAATTAAATTGCTAAGAA
70289876 ATAATATC
1 ATAATATC
70289884 ACATAATAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.36
Consensus pattern (33 bp):
ATAATATCCCATTAGGAATTAAATTGCTAAGAA
Found at i:70295591 original size:18 final size:18
Alignment explanation
Indices: 70295570--70295610 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
70295560 TTATTTTTTA
70295570 AAAAAATT-TAAAATTAT
1 AAAAAATTATAAAATTAT
*
70295587 TAAAAATTATAAAATTAT
1 AAAAAATTATAAAATTAT
70295605 AAAAAA
1 AAAAAA
70295611 ACATTTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAAAATTATAAAATTAT
Found at i:70319928 original size:16 final size:16
Alignment explanation
Indices: 70319909--70319952 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 16
70319899 TAAAAATAAT
70319909 TTAAAATATAAATTTA
1 TTAAAATATAAATTTA
70319925 TTAATATATATAAATTTA
1 TTAA-A-ATATAAATTTA
*
70319943 TTAATATATA
1 TTAAAATATA
70319953 TGTAAAAACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 9 0.36
17 1 0.04
18 15 0.60
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAAAATATAAATTTA
Found at i:70319935 original size:18 final size:18
Alignment explanation
Indices: 70319914--70319953 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
70319904 ATAATTTAAA
70319914 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
70319932 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
70319950 ATAT
1 ATAT
70319954 GTAAAAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:70320108 original size:28 final size:28
Alignment explanation
Indices: 70320044--70320109 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
70320034 CCAGAAAAGT
* * *
70320044 AAATCATTTTTCAGAAATCATTTTCTAA
1 AAATCATTTTCCAAAAATCATTTTCGAA
*
70320072 AAATCATTTTCCAAAAATCATTTTCCGGA
1 AAATCATTTTCCAAAAATCATTTT-CGAA
70320101 AAAT-ATTTT
1 AAATCATTTT
70320110 ACCTGCAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 27 0.82
29 6 0.18
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (28 bp):
AAATCATTTTCCAAAAATCATTTTCGAA
Found at i:70320109 original size:14 final size:14
Alignment explanation
Indices: 70320044--70320097 Score: 81
Period size: 14 Copynumber: 3.9 Consensus size: 14
70320034 CCAGAAAAGT
* *
70320044 AAATCATTTTTCAG
1 AAATCATTTTCCAA
*
70320058 AAATCATTTTCTAA
1 AAATCATTTTCCAA
70320072 AAATCATTTTCCAA
1 AAATCATTTTCCAA
70320086 AAATCATTTTCC
1 AAATCATTTTCC
70320098 GGAAAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 36 1.00
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.41
Consensus pattern (14 bp):
AAATCATTTTCCAA
Found at i:70321910 original size:27 final size:27
Alignment explanation
Indices: 70321833--70321911 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 27
70321823 GTGAAATACT
* *
70321833 TATTATTATTTTATATA-TCCCTCATCA
1 TATTA-TATTTTATATATTTCATCATCA
*
70321860 TATTATATTCTATTTATATATTCATCA-CA
1 TATTATATT-T-TATATAT-TTCATCATCA
70321889 TATTATATTTTACTATATTTCAT
1 TATTATATTTTA-TATATTTCAT
70321912 GATATTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
26 4 0.09
27 12 0.28
28 11 0.26
29 11 0.26
30 5 0.12
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (27 bp):
TATTATATTTTATATATTTCATCATCA
Found at i:70321936 original size:20 final size:21
Alignment explanation
Indices: 70321888--70321936 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
70321878 TATTCATCAC
70321888 ATATTATA-TTTTACTATATT
1 ATATTATATTTTTACTATATT
*
70321908 -TCATGATATTTTTA-TATATT
1 AT-ATTATATTTTTACTATATT
70321928 ATATTATAT
1 ATATTATAT
70321937 ACATTGTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
19 1 0.04
20 17 0.71
21 6 0.25
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (21 bp):
ATATTATATTTTTACTATATT
Found at i:70325860 original size:18 final size:19
Alignment explanation
Indices: 70325774--70325877 Score: 59
Period size: 20 Copynumber: 4.9 Consensus size: 19
70325764 TAAGTTTTTA
*
70325774 ATATTATATTTCACATATATT
1 ATATTATATTTC-TA-ATATT
70325795 ATTATATATATTT-TAATATT
1 A-TAT-TATATTTCTAATATT
*
70325815 ATTAGTTATATTTTTTTTATACTATT
1 A-TA-TTATA---TTTCTA-A-TATT
70325841 ATA-TATATTTCTAATATT
1 ATATTATATTTCTAATATT
70325859 ATATTGTATATTTCTAATA
1 ATA-T-TATATTTCTAATA
70325878 CTATTATTTA
Statistics
Matches: 69, Mismatches: 2, Indels: 24
0.73 0.02 0.25
Matches are distributed among these distances:
18 7 0.10
19 1 0.01
20 18 0.26
21 16 0.23
22 3 0.04
23 14 0.20
24 2 0.03
25 3 0.04
26 5 0.07
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.58
Consensus pattern (19 bp):
ATATTATATTTCTAATATT
Found at i:70325870 original size:21 final size:21
Alignment explanation
Indices: 70325777--70325890 Score: 90
Period size: 21 Copynumber: 5.3 Consensus size: 21
70325767 GTTTTTAATA
70325777 TTATATTTC-ACATA-TATTAT
1 TTATATTTCTA-ATACTATTAT
* *
70325797 TATATATATTTTAATATTATTAGT
1 T-TATAT-TTCTAATACTATTA-T
* * *
70325821 TATATTTTTTTTATACTATTAT
1 T-TATATTTCTAATACTATTAT
* *
70325843 ATATATTTCTAATATTA-TAT
1 TTATATTTCTAATACTATTAT
70325863 TGTATATTTCTAATACTATTAT
1 T-TATATTTCTAATACTATTAT
70325885 TTATAT
1 TTATAT
70325891 ATATGTGTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
20 4 0.05
21 37 0.49
22 10 0.13
23 18 0.24
24 7 0.09
ACGTcount: A:0.34, C:0.05, G:0.02, T:0.59
Consensus pattern (21 bp):
TTATATTTCTAATACTATTAT
Found at i:70338286 original size:72 final size:72
Alignment explanation
Indices: 70338158--70338294 Score: 202
Period size: 72 Copynumber: 1.9 Consensus size: 72
70338148 AATTCATGTT
* * **
70338158 TTCAGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAA
70338223 TTTATGC
66 TTTATGC
** * *
70338230 TTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTCAA
1 TTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAA
70338295 ATTCTCTTGT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.27
Consensus pattern (72 bp):
TTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTAATTTCAA
TTTATGC
Found at i:70338415 original size:71 final size:71
Alignment explanation
Indices: 70338330--70338468 Score: 215
Period size: 71 Copynumber: 2.0 Consensus size: 71
70338320 AATTTTTACT
* *
70338330 TTTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
1 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
70338395 TTTATG
66 TTTATG
** * * *
70338401 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGGCACGTTGAGGTATTTTTAA
1 TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
70338466 TTT
66 TTT
70338469 CTACTTTCCA
Statistics
Matches: 61, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (71 bp):
TTTCAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAA
TTTATG
Found at i:70338629 original size:54 final size:54
Alignment explanation
Indices: 70338484--70338693 Score: 278
Period size: 54 Copynumber: 3.9 Consensus size: 54
70338474 TTCCAATTCC
* * *
70338484 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTAAGTTGAGCCTTTCAATTTA
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
* *** *
70338538 TATTTAAAAAAAAAATCAACTCATATCGCGAGAGGTGAGTTGAGCCTTTTAATTTT
1 TGTTT--TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
* *
70338594 TGTTTTTCAAAAAGCAATTCATATTGCGAGAGGTGAGTTGTA-CCTTTTAATTTT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCCTTTTAATTTT
* *
70338648 TGTTTTTCAAAAATCAAATCATATTGCGAGAAGTGAGTTGAGCCTT
1 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
70338694 AGGTCATATG
Statistics
Matches: 134, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 86 0.64
55 1 0.01
56 46 0.34
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (54 bp):
TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTT
Found at i:70341017 original size:21 final size:22
Alignment explanation
Indices: 70340950--70341052 Score: 106
Period size: 21 Copynumber: 4.8 Consensus size: 22
70340940 TATTTCACAT
70340950 ATATTATTA-TATATATTT-TA
1 ATATTATTATTATATATTTCTA
* * *
70340970 ATATTATTAGTTATATTTTTTTT
1 ATATTATTA-TTATATATTTCTA
*
70340993 ATA-TACTATTATATATTTCTA
1 ATATTATTATTATATATTTCTA
*
70341014 ATATTA-TATTGTATATTTCTA
1 ATATTATTATTATATATTTCTA
*
70341035 ATACTATTATTTATATAT
1 ATATTATTA-TTATATAT
70341053 ATATGTGTGT
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
20 9 0.13
21 32 0.47
22 16 0.24
23 11 0.16
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (22 bp):
ATATTATTATTATATATTTCTA
Found at i:70341051 original size:23 final size:21
Alignment explanation
Indices: 70340938--70341052 Score: 99
Period size: 21 Copynumber: 5.2 Consensus size: 21
70340928 TTTTTAATAT
70340938 TATATTTC-ACATATATTATTA
1 TATATTTCTA-ATATATTATTA
*
70340959 TATATATTTTAATATTATTAGTTA
1 TATAT-TTCTAATA-TATTA-TTA
* * * *
70340983 TATTTTTTTTATATACTATTA
1 TATATTTCTAATATATTATTA
*
70341004 TATATTTCTAATAT-TATATTG
1 TATATTTCTAATATAT-TATTA
70341025 TATATTTCTAATACTATTATTTA
1 TATATTTCTAATA-TATTA-TTA
70341048 TATAT
1 TATAT
70341053 ATATGTGTGT
Statistics
Matches: 76, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
21 36 0.47
22 12 0.16
23 21 0.28
24 7 0.09
ACGTcount: A:0.35, C:0.05, G:0.02, T:0.58
Consensus pattern (21 bp):
TATATTTCTAATATATTATTA
Found at i:70356312 original size:25 final size:24
Alignment explanation
Indices: 70356278--70356337 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
70356268 TTTTGTTTTA
*
70356278 GTATTTATTT-TTATGTTTTTAAAT
1 GTATTTATTTATTAT-ATTTTAAAT
70356302 GTATTTGATTTATTATATTTTAAAT
1 GTATTT-ATTTATTATATTTTAAAT
* *
70356327 TTTTTTATTTA
1 GTATTTATTTA
70356338 ATAAAAAAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 11 0.35
25 16 0.52
26 4 0.13
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (24 bp):
GTATTTATTTATTATATTTTAAAT
Found at i:70357096 original size:18 final size:18
Alignment explanation
Indices: 70357073--70357108 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70357063 ACTAAACCAT
*
70357073 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
70357091 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
70357109 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:70357771 original size:21 final size:21
Alignment explanation
Indices: 70357722--70357772 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
70357712 TATTATTCCC
** *
70357722 CATATTTAATGTTATTGTCAA
1 CATATTTTTTGTTATTATCAA
*
70357743 CATATTTTTTGTTATTATCAT
1 CATATTTTTTGTTATTATCAA
*
70357764 CATGTTTTT
1 CATATTTTT
70357773 AATATTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.25, C:0.10, G:0.08, T:0.57
Consensus pattern (21 bp):
CATATTTTTTGTTATTATCAA
Found at i:70358223 original size:126 final size:127
Alignment explanation
Indices: 70357988--70358226 Score: 426
Period size: 126 Copynumber: 1.9 Consensus size: 127
70357978 ATCTTCTCTC
*
70357988 AAAATTTTTCAAAATAAAGGCAATGTTCGGTGTTTAAAGAATTCGAAGAATCGTGCCCTAACGTA
1 AAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGTA
*
70358053 CTGGGTTTCGTTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCACTCTAA
66 CTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCACTCTAA
* *
70358115 AAAATTTTT-AAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATTGTGCCCTAATGTA
1 AAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGTA
*
70358179 CTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 CTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
70358227 AGGCTAAAAC
Statistics
Matches: 107, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
126 98 0.92
127 9 0.08
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.39
Consensus pattern (127 bp):
AAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTAACGTA
CTGGGTTTCGCTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCACTCTAA
Found at i:70364286 original size:15 final size:14
Alignment explanation
Indices: 70364263--70364310 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 14
70364253 AAAAAAAAAG
70364263 AAGAG-AAAAAGGA
1 AAGAGAAAAAAGGA
70364276 AAGAGAAAAAAGGA
1 AAGAGAAAAAAGGA
*
70364290 AA-AGGAAAAA-G-
1 AAGAGAAAAAAGGA
70364301 AAGAGAAAAA
1 AAGAGAAAAA
70364311 CAAAAAAGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 2 0.06
12 7 0.23
13 12 0.39
14 10 0.32
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (14 bp):
AAGAGAAAAAAGGA
Found at i:70365859 original size:44 final size:46
Alignment explanation
Indices: 70365811--70365897 Score: 106
Period size: 46 Copynumber: 1.9 Consensus size: 46
70365801 CTAAATATAG
* *
70365811 CAGATCTCATC-CCACTG-GCTGGAGTGGAACAGATCAAATTTCGA
1 CAGATCTCATCTCCACTGAGCAGGAGCGGAACAGATCAAATTTCGA
* * * *
70365855 CAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTT
1 CAGATCTCATCTCCACTGAGCAGGAGCGGAACAGATCAAATTT
70365898 TGGCGAATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 10 0.29
45 4 0.11
46 21 0.60
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (46 bp):
CAGATCTCATCTCCACTGAGCAGGAGCGGAACAGATCAAATTTCGA
Found at i:70365898 original size:177 final size:177
Alignment explanation
Indices: 70365590--70366043 Score: 743
Period size: 177 Copynumber: 2.6 Consensus size: 177
70365580 ACAGATTCGG
**
70365590 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCTTCTGGCAG
1 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
* *
70365655 GAGTGGAATAGATCAAATTTCGACAGATCTTATCTTCGCTGATCAGGAGCGGAGCAGATCAAATT
66 GAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATT
70365720 TTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCAGCCA
131 TTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCA-CCA
* * * * *
70365768 CCAGCCTTCT-TCACTGAGTAGGAGT-GAAGCAGGCTAAATATAGCAGATCTCATCCCACTGGCT
1 CAAGCCTTATCCCACTGAGCAGGAGTGGAA-CAGGCTAAATATAGCAGATCTCATCCCACTGGCA
70365831 GGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAAT
65 GGAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAAT
* *
70365896 TTTGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCACCA
130 TTTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCACCA
*
70365944 CAAGCCTTATCCCCCTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
1 CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
*
70366009 GAGTGGAACAGATCAAATTTC-AGCGGATCTTATCT
66 GAGTGGAACAGATCAAATTTCGA-CAGATCTTATCT
70366044 CCATGTATCG
Statistics
Matches: 254, Mismatches: 18, Indels: 9
0.90 0.06 0.03
Matches are distributed among these distances:
176 15 0.06
177 228 0.90
178 11 0.04
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (177 bp):
CAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATCCCACTGGCAG
GAGTGGAACAGATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATT
TTGGCAAATCTTACCTCCATGTATCGGCAATGGAGCAGATTTCACCA
Found at i:70366315 original size:132 final size:134
Alignment explanation
Indices: 70365819--70366379 Score: 628
Period size: 132 Copynumber: 4.2 Consensus size: 134
70365809 AGCAGATCTC
* * * * * * * *
70365819 ATCCCACTG-GCTGGAGTGGAACA-GATCAAATTTCGACAGATCTTATCTTCGCTGAGCAGGAGC
1 ATCCCACTGAGCAGGAGTGGAACAGGCT-AAATATAGA-AGATCTCATCTCCACTGAGCAGGAGT
* ** *
70365882 GGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTC-ACCACA
64 GGAACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACC
70365946 AGCCTT
129 AGCCTT
* *
70365952 ATCCCCCTGAGCAGGAGTGGAACAGGCTAAATATAGCAGATCTCATC-CCACTG-GCAGGAGTGG
1 ATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGAAGATCTCATCTCCACTGAGCAGGAGTGG
* * *
70366015 AACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCATATTTCAGCCACCAG
66 AACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAG
70366080 CCTT
131 CCTT
* * * * * * *
70366084 ATCTTCACTGAGCAGAAGTTGAGCAGGCTAAACTCT---AGATCTTATCTTCACTGAGCAGGAGT
1 ATC-CCACTGAGCAGGAGTGGAACAGGCTAAA-TATAGAAGATCTCATCTCCACTGAGCAGGAGT
* * * *
70366146 GGAGCAGATCAAATTT-TGACGAATCTTATCTCTATGTATCGGCAATAGAGCAGA-TTCAAACCA
64 GGAACAGATCAAATTTCAG-CGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTC-AACCA
*
70366209 CCAGCGTT
127 CCAGCCTT
*
70366217 ATCCCACTGAGCAGGAGTGGAACAGGTTAAATATAGAAGATCTCATC-CCACTG-GCAGGAGTGG
1 ATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGAAGATCTCATCTCCACTGAGCAGGAGTGG
*
70366280 AACAGATCAAATTTCAGCGGATCTTATCTCCATGTATCGGCAATGGAGCAGA-TTCAAACCACCA
66 AACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTC-AACCACCA
*
70366344 GTCTT
130 GCCTT
* * * *
70366349 AACCCCCTAAGCAGTAG-GGTAACAGGCTAAA
1 ATCCCACTGAGCAGGAGTGG-AACAGGCTAAA
70366380 AACTACAGAT
Statistics
Matches: 361, Mismatches: 53, Indels: 29
0.81 0.12 0.07
Matches are distributed among these distances:
131 73 0.20
132 142 0.39
133 114 0.32
134 30 0.08
135 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (134 bp):
ATCCCACTGAGCAGGAGTGGAACAGGCTAAATATAGAAGATCTCATCTCCACTGAGCAGGAGTGG
AACAGATCAAATTTCAGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCAACCACCAG
CCTT
Found at i:70366344 original size:265 final size:264
Alignment explanation
Indices: 70365856--70366349 Score: 830
Period size: 265 Copynumber: 1.9 Consensus size: 264
70365846 AAATTTCGAC
* *
70365856 AGATCTTATCTTCGCTGAGCAGGAGCGGAGCAGATCAAATTTTGGCGAATCTTATCTCCATGTAT
1 AGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTAT
* *
70365921 CGGCAATGGAGCAGATTTCACCACAAGCCTTATCCCCCTGAGCAGGAGTGGAACAGGCTAAATAT
66 CGGCAATAGAGCAGATTTCACCACAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATAT
*
70365986 AGCAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTA
131 AGAAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTA
* *
70366051 TCGGCAATGGAGCATATTTCAGCCACCAGCCTTATCTTCACTGAGCAGAAGTTGAGCAGGCTAAA
196 TCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGAAGTTGAGCAGGCTAAA
70366116 CTCT
261 CTCT
* *
70366120 AGATCTTATCTTCACTGAGCAGGAGTGGAGCAGATCAAATTTTGACGAATCTTATCTCTATGTAT
1 AGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTAT
* * *
70366185 CGGCAATAGAGCAGA-TTCAAACCACCAGCGTTATCCCACTGAGCAGGAGTGGAACAGGTTAAAT
66 CGGCAATAGAGCAGATTTC--ACCACAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAAT
70366249 ATAGAAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATG
129 ATAGAAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATG
*
70366314 TATCGGCAATGGAGCAGA-TTCAAACCACCAGTCTTA
194 TATCGGCAATGGAGCAGATTTC-AACCACCAGCCTTA
70366350 ACCCCCTAAG
Statistics
Matches: 214, Mismatches: 13, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
263 3 0.01
264 78 0.36
265 133 0.62
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (264 bp):
AGATCTTATCTTCACTGAGCAGGAGCGGAGCAGATCAAATTTTGACGAATCTTATCTCCATGTAT
CGGCAATAGAGCAGATTTCACCACAAGCCTTATCCCACTGAGCAGGAGTGGAACAGGCTAAATAT
AGAAGATCTCATCCCACTGGCAGGAGTGGAACAGATCAAATTTCAGCGGATCTTATCTCCATGTA
TCGGCAATGGAGCAGATTTCAACCACCAGCCTTATCTTCACTGAGCAGAAGTTGAGCAGGCTAAA
CTCT
Found at i:70366513 original size:44 final size:44
Alignment explanation
Indices: 70366384--70366514 Score: 108
Period size: 44 Copynumber: 3.0 Consensus size: 44
70366374 GCTAAAAACT
* * *
70366384 ACAGATCTTGTCTCCTTAAGCGATAGTGGAGTAGATCAAAGA-A
1 ACAGATCTTATCTCCTTAAGCAATAGTGGAGCAGATCAAAGATA
* * * * * * *
70366427 ACACGCT-TTAACTCCCTAAGCAATAG-GGTAACA-AGCTGAAGATT
1 ACA-GATCTTATCTCCTTAAGCAATAGTGG-AGCAGATC-AAAGATA
*
70366471 ATAGATCTTATCTCCTTAAGCAATAGTGGAGCAGATCAAAGATA
1 ACAGATCTTATCTCCTTAAGCAATAGTGGAGCAGATCAAAGATA
70366515 CACGCCTTAA
Statistics
Matches: 63, Mismatches: 18, Indels: 13
0.67 0.19 0.14
Matches are distributed among these distances:
42 4 0.06
43 26 0.41
44 29 0.46
45 4 0.06
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (44 bp):
ACAGATCTTATCTCCTTAAGCAATAGTGGAGCAGATCAAAGATA
Found at i:70366741 original size:85 final size:85
Alignment explanation
Indices: 70366498--70366906 Score: 563
Period size: 85 Copynumber: 4.8 Consensus size: 85
70366488 AAGCAATAGT
* * *
70366498 GGAGCAGATCAAAGATACACGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGA
1 GGAGCAGGTCAAAG--ACTCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA
70366563 TCTGGGCTCGCCGAGCAGTGGC
64 TCTGGGCTCGCCGAGCAGTGGC
* * *
70366585 GGAGCAGATCAAAGATACACGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAATTTACAGA
1 GGAGCAGGTCAAAG--ACTCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA
*
70366650 TCTGGGCTCGCCGAGCATTGGC
64 TCTGGGCTCGCCGAGCAGTGGC
* * * * *
70366672 GGAGCAGGTCGAAGACTCGCCTTAACTCCCTAAGCAGTAGGGTAAGAGGCTAAAGTTTATAGA-C
1 GGAGCAGGTCAAAGACTCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATC
* *
70366736 TTGGGCTCGCCGAACAGTGGT
66 -TGGGCTCGCCGAGCAGTGGC
*
70366757 GGAGCAGGTCAAAGACTCGCCTTAGCCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATC
1 GGAGCAGGTCAAAGACTCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGAT-
** * *
70366822 CT-AACTCTCCGAGCAGTGGT
65 CTGGGCTCGCCGAGCAGTGGC
*
70366842 GGAGCAGGTCGAAGACTCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAA-TTACAGATC
1 GGAGCAGGTCAAAGACTCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATC
70366906 T
66 T
70366907 TATTTTCGTT
Statistics
Matches: 293, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
83 2 0.01
84 9 0.03
85 184 0.63
86 1 0.00
87 97 0.33
ACGTcount: A:0.30, C:0.24, G:0.26, T:0.19
Consensus pattern (85 bp):
GGAGCAGGTCAAAGACTCGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATC
TGGGCTCGCCGAGCAGTGGC
Found at i:70366849 original size:170 final size:171
Alignment explanation
Indices: 70366346--70366906 Score: 598
Period size: 174 Copynumber: 3.3 Consensus size: 171
70366336 AACCACCAGT
** * * * ** *
70366346 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAACTACAGATCTTGTCTC-CTTAAGC-GATA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGATCTGGGCTCGCCGAA-CAG-TG
* * * * * * * *
70366409 GTGGAGTAGATCAAAGAAACACGCTTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAGA-TTAT
64 GCGGAGCAGATCAAAG-AACACGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTTAC
* * ** * * * * * *
70366473 AGATCTTATCTC-CTTAAGCAATAGTGGAGCAGATCAAAGATACACGC
127 AGATCTGAACTCGC-CGAGCAGTGGCGGAGCAGGTCGAAG--ACTCGC
*
70366520 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGATCTGGGCTCGCCGAGCAGTGGC
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGATCTGGGCTCGCCGAACAGTGGC
*
70366585 GGAGCAGATCAAAGATACACGCCTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAATTTACAGA
66 GGAGCAGATCAAAGA-ACACGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA
** *
70366650 TCTGGGCTCGCCGAGCATTGGCGGAGCAGGTCGAAGACTCGC
130 TCTGAACTCGCCGAGCAGTGGCGGAGCAGGTCGAAGACTCGC
* * * *
70366692 CTTAACTCCCTAAGCAGTAGGGTAAGAGGCTAAAGTTTATAGA-CTTGGGCTCGCCGAACAGTGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGATC-TGGGCTCGCCGAACAGTGG
* * * *
70366756 TGGAGCAGGTCAAAG-ACTCGCCTTAGCCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA
65 CGGAGCAGATCAAAGAACACGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGA
* *
70366820 TCCT-AACTCTCCGAGCAGTGGTGGAGCAGGTCGAAGACTCGC
130 T-CTGAACTCGCCGAGCAGTGGCGGAGCAGGTCGAAGACTCGC
*
70366862 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAA-TTACAGATCT
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGATCT
70366907 TATTTTCGTT
Statistics
Matches: 331, Mismatches: 48, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
169 7 0.02
170 113 0.34
171 3 0.01
172 75 0.23
173 4 0.01
174 125 0.38
175 4 0.01
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (171 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGATCTGGGCTCGCCGAACAGTGGC
GGAGCAGATCAAAGAACACGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGAT
CTGAACTCGCCGAGCAGTGGCGGAGCAGGTCGAAGACTCGC
Found at i:70366921 original size:85 final size:86
Alignment explanation
Indices: 70366346--70366908 Score: 536
Period size: 87 Copynumber: 6.5 Consensus size: 86
70366336 AACCACCAGT
* * * ** *
70366346 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAAACTACAGATCTT-GTCTCCTTAAGC-GATA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTACAGATCTTAGGCTCGTCGAGCAG-TG
*
70366409 GTGGAGTAGATCAAAGAAACACGC
64 GTGGAGCAGATCAAAG-AACACGC
* * * * * * * * ** * *
70366433 TTTAACTCCCTAAGCAATAGGGTAACAAGCTGAAGATTATAGATCTTA-TCTCCTTAAGCAATAG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCT-AAAATTACAGATCTTAGGCTCGTCGAGCAGTGG
70366497 TGGAGCAGATCAAAGATACACGC
65 TGGAGCAGATCAAAGA-ACACGC
* * *
70366520 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTAAAGATC-TGGGCTCGCCGAGCAGTGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAA-TTACAGATCTTAGGCTCGTCGAGCAGTGG
*
70366584 CGGAGCAGATCAAAGATACACGC
65 TGGAGCAGATCAAAGA-ACACGC
* * * *
70366607 CTTAACCCCCTAAGTAGTAGGGTAACAGGCTAAAATTTACAGATC-TGGGCTCGCCGAGCATTGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAA-TTACAGATCTTAGGCTCGTCGAGCAGTGG
* * * *
70366671 CGGAGCAGGTCGAAG-ACTCGC
65 TGGAGCAGATCAAAGAACACGC
* * * * * * *
70366692 CTTAACTCCCTAAGCAGTAGGGTAAGAGGCTAAAGTTTATAGA-CTTGGGCTCGCCGAACAGTGG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAA-ATTACAGATCTTAGGCTCGTCGAGCAGTGG
* *
70366756 TGGAGCAGGTCAAAG-ACTCGC
65 TGGAGCAGATCAAAGAACACGC
* * *
70366777 CTTAGCCCCCTAAGCAGTAGGGTAACAGGCTAAAATTTACAGATCCTA-ACTC-TCCGAGCAGTG
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAA-TTACAGATCTTAGGCTCGT-CGAGCAGTG
* * *
70366840 GTGGAGCAGGTCGAAG-ACTCGC
64 GTGGAGCAGATCAAAGAACACGC
70366862 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTA
1 CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTA
70366909 TTTTCGTTGA
Statistics
Matches: 413, Mismatches: 53, Indels: 23
0.84 0.11 0.05
Matches are distributed among these distances:
84 12 0.03
85 181 0.44
86 7 0.02
87 213 0.52
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (86 bp):
CTTAACCCCCTAAGCAGTAGGGTAACAGGCTAAAATTACAGATCTTAGGCTCGTCGAGCAGTGGT
GGAGCAGATCAAAGAACACGC
Found at i:70367177 original size:29 final size:29
Alignment explanation
Indices: 70367144--70367206 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
70367134 CCAAATTAAA
70367144 CACCCTACTAAACCGA-CCACTAACTCCAT
1 CACCCTACTAAACC-ATCCACTAACTCCAT
*
70367173 CACCCTACTAAACCATCCACTACCTCCAT
1 CACCCTACTAAACCATCCACTAACTCCAT
70367202 CACCC
1 CACCC
70367207 CCACTAACTC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 1 0.03
29 31 0.97
ACGTcount: A:0.32, C:0.49, G:0.02, T:0.17
Consensus pattern (29 bp):
CACCCTACTAAACCATCCACTAACTCCAT
Found at i:70367212 original size:18 final size:18
Alignment explanation
Indices: 70367189--70367224 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
70367179 ACTAAACCAT
*
70367189 CCACTACCTCCATCACCC
1 CCACTAACTCCATCACCC
70367207 CCACTAACTCCATCACCC
1 CCACTAACTCCATCACCC
70367225 TACTTGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.58, G:0.00, T:0.17
Consensus pattern (18 bp):
CCACTAACTCCATCACCC
Found at i:70367638 original size:63 final size:63
Alignment explanation
Indices: 70367497--70367638 Score: 141
Period size: 63 Copynumber: 2.2 Consensus size: 63
70367487 TTAACCCTTA
* * *
70367497 TTTTATTTTTG-TTATTTTACTGTTAAATTAATTAATTTGAGCTTTATTCTCATTATTTTTATAT
1 TTTTA-TTTTGATTATTTTACTATTAAATTAATTAATTTGAGC-TCATTCTCATTATTATTATAT
* * *
70367561 TTGTT-TTTTTATTATTTT-CTATTAATTTAATTAATTTGAG-TCATGTTTCA-TATTATTATAT
1 TT-TTATTTTGATTATTTTACTATTAAATTAATTAATTTGAGCTCAT-TCTCATTATTATTATAT
70367622 TATTTATTTATGATTAT
1 T-TTTATTT-TGATTAT
70367639 ATATTTATTA
Statistics
Matches: 65, Mismatches: 7, Indels: 13
0.76 0.08 0.15
Matches are distributed among these distances:
61 16 0.25
62 8 0.12
63 30 0.46
64 9 0.14
65 2 0.03
ACGTcount: A:0.26, C:0.05, G:0.06, T:0.63
Consensus pattern (63 bp):
TTTTATTTTGATTATTTTACTATTAAATTAATTAATTTGAGCTCATTCTCATTATTATTATAT
Found at i:70368341 original size:126 final size:126
Alignment explanation
Indices: 70368106--70368349 Score: 416
Period size: 126 Copynumber: 1.9 Consensus size: 126
70368096 CATTGATCTT
* *
70368106 CTCTCAAAATTTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
*
70368171 ACGTACTGGGTTTCATTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
* *
70368232 CTCTAAAAAATTTTCAAAATAAATGCAATGTTCGGTATTTAAAGAATTTGAAGAATCGTGCCCTA
1 CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
* * *
70368297 ATGTACTGGGTTTCGCTTTCTTTGTTTGTTTTGAATATTCGAATATCCTCTTA
66 ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTA
70368350 AGGCTAAAAC
Statistics
Matches: 110, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
126 110 1.00
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.39
Consensus pattern (126 bp):
CTCTAAAAAATTTTCAAAATAAAGGCAATGTTCGGTATTTAAAGAATTCGAAGAATCGTGCCCTA
ACGTACTGGGTTTCACTTTCTTTGTTTGTCTTGAATATTCGAATATCCTCTTACCAGTTCA
Found at i:70376198 original size:18 final size:18
Alignment explanation
Indices: 70376175--70376215 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
70376165 TACTTTTCTC
70376175 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
70376193 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
70376211 TTTCT
1 TTTCT
70376216 TTTTTTTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:70376400 original size:38 final size:39
Alignment explanation
Indices: 70376316--70376409 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 39
70376306 ACCAATATGG
*
70376316 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
70376355 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* *
70376393 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
70376410 AATCTATCCG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 19 0.40
39 25 0.53
40 3 0.06
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:70382289 original size:20 final size:19
Alignment explanation
Indices: 70382264--70382306 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 19
70382254 GCAATTTACC
70382264 AATTATAT-TATTTATGTTTA
1 AATTATATATA-TTAT-TTTA
70382284 AATTATATATATTATTTTA
1 AATTATATATATTATTTTA
70382303 AATT
1 AATT
70382307 TGTAAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.36
20 12 0.55
21 2 0.09
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (19 bp):
AATTATATATATTATTTTA
Found at i:70382498 original size:7 final size:7
Alignment explanation
Indices: 70382486--70382519 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
70382476 ATATTCTTGT
70382486 TATTATA
1 TATTATA
70382493 TATTATA
1 TATTATA
70382500 TATTATA
1 TATTATA
*
70382507 TATTAAA
1 TATTATA
70382514 TATTAT
1 TATTAT
70382520 TTTAAAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATTATA
Found at i:70382734 original size:29 final size:29
Alignment explanation
Indices: 70382696--70382759 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
70382686 ATATTTCTTC
* *
70382696 TATTTGTATATCATACATTATTTGATTAT
1 TATTTTTATATCATACATTATTTAATTAT
* *
70382725 TGTTTTTATATCATGCATTATTTAATTAT
1 TATTTTTATATCATACATTATTTAATTAT
70382754 TATTTT
1 TATTTT
70382760 GCTTATTCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (29 bp):
TATTTTTATATCATACATTATTTAATTAT
Found at i:70391732 original size:3 final size:3
Alignment explanation
Indices: 70391724--70391748 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
70391714 TGACGCCCAT
70391724 CAC CAC CAC CAC CAC CAC CAC CAC C
1 CAC CAC CAC CAC CAC CAC CAC CAC C
70391749 CACAACAGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.68, G:0.00, T:0.00
Consensus pattern (3 bp):
CAC
Found at i:70403374 original size:25 final size:25
Alignment explanation
Indices: 70403346--70403395 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
70403336 TGGAAAAAAG
70403346 TTGTTTTTAAGAAAAATAATAAATA
1 TTGTTTTTAAGAAAAATAATAAATA
70403371 TTGTTTTTAAGAAAAATAATAAATA
1 TTGTTTTTAAGAAAAATAATAAATA
70403396 GATTTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (25 bp):
TTGTTTTTAAGAAAAATAATAAATA
Found at i:70404425 original size:18 final size:18
Alignment explanation
Indices: 70404402--70404438 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
70404392 TAATAAAGTG
70404402 TGTATAATAAA-ATTGAAA
1 TGTATAA-AAATATTGAAA
70404420 TGTATAAAAATATTGAAA
1 TGTATAAAAATATTGAAA
70404438 T
1 T
70404439 AAGACTTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (18 bp):
TGTATAAAAATATTGAAA
Found at i:70405227 original size:8 final size:8
Alignment explanation
Indices: 70405214--70405242 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
70405204 TTGTATGTAA
70405214 AAAAAAAT
1 AAAAAAAT
70405222 AAAAAAAT
1 AAAAAAAT
70405230 AAAAAAAT
1 AAAAAAAT
70405238 AAAAA
1 AAAAA
70405243 GGAGAAGGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAAAT
Found at i:70413523 original size:46 final size:46
Alignment explanation
Indices: 70413486--70413692 Score: 281
Period size: 46 Copynumber: 4.5 Consensus size: 46
70413476 ATGGAATGTG
*
70413486 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
*
70413532 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
* * *
70413578 TAAGACCATGGTTGAAAGATACAATGGCAACATGACAGGAAAATGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAA
* * * *
70413625 TAAGAACATGGTTGAAAGATACCATGGCAACATGACA-GAAAACGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAA
* * *
70413671 TAAAACTATAGTTGAAAGATAC
1 TAAGACCATGGTTGAAAGATAC
70413693 TATGACATCA
Statistics
Matches: 146, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 105 0.72
47 41 0.28
ACGTcount: A:0.44, C:0.14, G:0.22, T:0.19
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAA
Found at i:70413649 original size:93 final size:92
Alignment explanation
Indices: 70413471--70413692 Score: 302
Period size: 93 Copynumber: 2.4 Consensus size: 92
70413461 AGTGTGCTCT
* * * * * * *
70413471 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAATAAG
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACAATGGCAACATGACAGGAAATGAATAAG
*
70413536 ACCATGGTTGAAAGATACCATGGCAAC
66 AACATGGTTGAAAGATACCATGGCAAC
70413563 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACAATGGCAACATGACAGGAAAATGAATAA
1 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACAATGGCAACATGACAGG-AAATGAATAA
70413628 GAACATGGTTGAAAGATACCATGGCAAC
65 GAACATGGTTGAAAGATACCATGGCAAC
* * * * *
70413656 ATGACA-GAAAACGAGTAAAACTATAGTTGAAAGATAC
1 CTGACATG-AAATGAGTAAGACCATGGTTGAAAGATAC
70413693 TATGACATCA
Statistics
Matches: 115, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
92 48 0.42
93 67 0.58
ACGTcount: A:0.43, C:0.14, G:0.23, T:0.20
Consensus pattern (92 bp):
CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACAATGGCAACATGACAGGAAATGAATAAG
AACATGGTTGAAAGATACCATGGCAAC
Found at i:70418594 original size:18 final size:18
Alignment explanation
Indices: 70418571--70418606 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70418561 TTGTATTCAC
* *
70418571 TTATTATTCTTTCATTTT
1 TTATTAGTCGTTCATTTT
70418589 TTATTAGTCGTTCATTTT
1 TTATTAGTCGTTCATTTT
70418607 ATCTATGTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.67
Consensus pattern (18 bp):
TTATTAGTCGTTCATTTT
Found at i:70418648 original size:3 final size:3
Alignment explanation
Indices: 70418630--70418759 Score: 93
Period size: 3 Copynumber: 40.3 Consensus size: 3
70418620 TTATCATTGG
*
70418630 TAT T-T TAT TAT CTAT TAT TAT CAT TAT TAT TATT TAT TCAT CTATT
1 TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TA-T TAT T-AT -TA-T
* * * * *
70418676 TATT TAT TACC CAT TTT GTACT TAT ATAT TAT TCT GAT T-T CTAT TAT
1 TA-T TAT TA-T TAT TAT -TA-T TAT -TAT TAT TAT TAT TAT -TAT TAT
70418723 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
70418760 TGTTTATACA
Statistics
Matches: 103, Mismatches: 12, Indels: 24
0.74 0.09 0.17
Matches are distributed among these distances:
2 3 0.03
3 74 0.72
4 23 0.22
5 3 0.03
ACGTcount: A:0.28, C:0.08, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:70419565 original size:18 final size:18
Alignment explanation
Indices: 70419542--70419582 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
70419532 TTTAACATCT
70419542 ATTTTGATTTATCTAAGC
1 ATTTTGATTTATCTAAGC
70419560 ATTTTGATTTATCTAAGC
1 ATTTTGATTTATCTAAGC
70419578 ATTTT
1 ATTTT
70419583 TTGTAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.54
Consensus pattern (18 bp):
ATTTTGATTTATCTAAGC
Found at i:70431981 original size:18 final size:18
Alignment explanation
Indices: 70431934--70431983 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
70431924 TGTAACGAGC
*
70431934 ATAAA-TTAAAAAAATAA
1 ATAAATTTATAAAAATAA
70431951 A-AATATCTT-TAAAAATAA
1 ATAA-AT-TTATAAAAATAA
70431969 ATAAATTTATAAAAA
1 ATAAATTTATAAAAA
70431984 GTATAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 9
0.73 0.03 0.24
Matches are distributed among these distances:
16 2 0.07
17 4 0.15
18 17 0.63
19 4 0.15
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (18 bp):
ATAAATTTATAAAAATAA
Found at i:70447921 original size:18 final size:17
Alignment explanation
Indices: 70447898--70447954 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
70447888 AAAAATTATA
70447898 AATAAATTTATAATAAAT
1 AATAAATTT-TAATAAAT
*
70447916 AATAAATTTTAGAAAAATT
1 AATAAATTTTA-ATAAA-T
*
70447935 ATTAAATTTTAATAAA-
1 AATAAATTTTAATAAAT
70447951 AATA
1 AATA
70447955 TAAAAAATTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 3 0.09
17 2 0.06
18 17 0.52
19 11 0.33
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.39
Consensus pattern (17 bp):
AATAAATTTTAATAAAT
Found at i:70447926 original size:19 final size:18
Alignment explanation
Indices: 70447898--70447958 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
70447888 AAAAATTATA
70447898 AATAAA-TTTATAATAAAT
1 AATAAATTTTATAA-AAAT
*
70447916 AATAAATTTTAGAAAAATT
1 AATAAATTTTATAAAAA-T
*
70447935 ATTAAATTTTAATAAAAAT
1 AATAAATTTT-ATAAAAAT
70447954 -ATAAA
1 AATAAA
70447959 AAATTAAGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
18 13 0.36
19 17 0.47
20 6 0.17
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AATAAATTTTATAAAAAT
Found at i:70448303 original size:9 final size:8
Alignment explanation
Indices: 70448265--70448292 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
70448255 TTTTTACAAC
70448265 TTTTAAAA
1 TTTTAAAA
70448273 TTTTAAAA
1 TTTTAAAA
70448281 TTTTAAAA
1 TTTTAAAA
70448289 TTTT
1 TTTT
70448293 TTAACAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (8 bp):
TTTTAAAA
Found at i:70450501 original size:18 final size:18
Alignment explanation
Indices: 70450478--70450519 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
70450468 GATTACATCA
70450478 AAACCCAAC-AAAACCTCT
1 AAACCCAACTAAAACC-CT
70450496 AAACCC-ACTAAAACCCT
1 AAACCCAACTAAAACCCT
*
70450513 TAACCCA
1 AAACCCA
70450520 TGACCCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.48, C:0.40, G:0.00, T:0.12
Consensus pattern (18 bp):
AAACCCAACTAAAACCCT
Found at i:70450613 original size:19 final size:19
Alignment explanation
Indices: 70450589--70450641 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
70450579 AGCCATTAAG
*
70450589 CCCCCCCAAAAAAACCTAA
1 CCCCCCAAAAAAAACCTAA
70450608 CCCCCCAAAAAAAACCTAA
1 CCCCCCAAAAAAAACCTAA
70450627 -CCCCCAAAAAAAACC
1 CCCCCCAAAAAAAACC
70450642 AAGAAACCCT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 15 0.45
19 18 0.55
ACGTcount: A:0.51, C:0.45, G:0.00, T:0.04
Consensus pattern (19 bp):
CCCCCCAAAAAAAACCTAA
Found at i:70450979 original size:18 final size:17
Alignment explanation
Indices: 70450939--70450977 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
70450929 CCTAAAGGTG
*
70450939 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTTATT
70450956 ATTTTACTCTTATTT-TT
1 ATTTTA-TCTTATTTATT
70450973 ATTTT
1 ATTTT
70450978 TATTTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTATCTTATTTATT
Found at i:70452638 original size:15 final size:15
Alignment explanation
Indices: 70452568--70452644 Score: 56
Period size: 15 Copynumber: 5.4 Consensus size: 15
70452558 TTTATGTACA
70452568 TATGTATATATTTTT
1 TATGTATATATTTTT
* * **
70452583 TTTGTACATA-TCAT
1 TATGTATATATTTTT
* *
70452597 TAT-TTTATATTATTG
1 TATGTATATATT-TTT
70452612 T-TGTA-A-ATTTTT
1 TATGTATATATTTTT
70452624 TATGTATATATTTTT
1 TATGTATATATTTTT
70452639 TATGTA
1 TATGTA
70452645 CGTTTCCTAA
Statistics
Matches: 44, Mismatches: 12, Indels: 12
0.65 0.18 0.18
Matches are distributed among these distances:
12 3 0.07
13 11 0.25
14 8 0.18
15 22 0.50
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (15 bp):
TATGTATATATTTTT
Found at i:70452644 original size:28 final size:28
Alignment explanation
Indices: 70452568--70452644 Score: 68
Period size: 28 Copynumber: 2.7 Consensus size: 28
70452558 TTTATGTACA
*
70452568 TATGTATATATTTTTTTTGTACATATCAT
1 TATGTATATA-TTTTTTTGTAAATATCAT
* * **
70452597 TAT-TTTATATTATTGTTGTAAAT-TTTT
1 TATGTATATATT-TTTTTGTAAATATCAT
70452624 TATGTATATATTTTTTATGTA
1 TATGTATATATTTTTT-TGTA
70452645 CGTTTCCTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 7
0.73 0.13 0.13
Matches are distributed among these distances:
27 10 0.26
28 25 0.66
29 3 0.08
ACGTcount: A:0.27, C:0.03, G:0.08, T:0.62
Consensus pattern (28 bp):
TATGTATATATTTTTTTGTAAATATCAT
Found at i:70454150 original size:28 final size:28
Alignment explanation
Indices: 70454112--70454167 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
70454102 TGTTGTAGTG
*
70454112 AATTTTGGAATATTAATAAGTATTGAAT
1 AATTTTAGAATATTAATAAGTATTGAAT
70454140 AATTTTAGAATATTAATAAGTATTGAAT
1 AATTTTAGAATATTAATAAGTATTGAAT
70454168 TATGTTATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.43
Consensus pattern (28 bp):
AATTTTAGAATATTAATAAGTATTGAAT
Found at i:70454518 original size:27 final size:26
Alignment explanation
Indices: 70454488--70454543 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 26
70454478 TTAAGGAACC
* *
70454488 TTAGCGCGCTCTCTGATTATTAGCACG
1 TTAG-GCGCTATCTGATTATTAGCACA
*
70454515 TTA-GTGCTATCTGATTATTAGCACA
1 TTAGGCGCTATCTGATTATTAGCACA
70454540 TTAG
1 TTAG
70454544 TGCTCTCCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
25 22 0.88
27 3 0.12
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.38
Consensus pattern (26 bp):
TTAGGCGCTATCTGATTATTAGCACA
Found at i:70454527 original size:25 final size:25
Alignment explanation
Indices: 70454499--70454595 Score: 91
Period size: 25 Copynumber: 4.2 Consensus size: 25
70454489 TAGCGCGCTC
*
70454499 TCTGATTATTAGCACGTTAGTGCTA
1 TCTGATTATTAGCACATTAGTGCTA
70454524 TCTGATTATTAGCACATTAGTGC--
1 TCTGATTATTAGCACATTAGTGCTA
** * *
70454547 TCT-CCT-TTAGCACATTTGTGCTC
1 TCTGATTATTAGCACATTAGTGCTA
*
70454570 TCTG--TA-TAGCACATTAGTGCTC
1 TCTGATTATTAGCACATTAGTGCTA
70454592 TCTG
1 TCTG
70454596 GTTAATAGTG
Statistics
Matches: 63, Mismatches: 5, Indels: 11
0.80 0.06 0.14
Matches are distributed among these distances:
21 14 0.22
22 21 0.33
23 6 0.10
25 22 0.35
ACGTcount: A:0.21, C:0.22, G:0.18, T:0.40
Consensus pattern (25 bp):
TCTGATTATTAGCACATTAGTGCTA
Found at i:70454558 original size:21 final size:22
Alignment explanation
Indices: 70454532--70454593 Score: 92
Period size: 21 Copynumber: 2.9 Consensus size: 22
70454522 TATCTGATTA
70454532 TTAGCACATTAGTGCTCTCCT-
1 TTAGCACATTAGTGCTCTCCTG
*
70454553 TTAGCACATTTGTGCTCT-CTG
1 TTAGCACATTAGTGCTCTCCTG
70454574 TATAGCACATTAGTGCTCTC
1 T-TAGCACATTAGTGCTCTC
70454594 TGGTTAATAG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.06
21 18 0.50
22 16 0.44
ACGTcount: A:0.19, C:0.26, G:0.16, T:0.39
Consensus pattern (22 bp):
TTAGCACATTAGTGCTCTCCTG
Found at i:70454582 original size:22 final size:21
Alignment explanation
Indices: 70454532--70454595 Score: 94
Period size: 22 Copynumber: 3.0 Consensus size: 21
70454522 TATCTGATTA
70454532 TTAGCACATTAGTGCTCTCCT-
1 TTAGCACATTAGTGCTCT-CTG
*
70454553 TTAGCACATTTGTGCTCTCTG
1 TTAGCACATTAGTGCTCTCTG
70454574 TATAGCACATTAGTGCTCTCTG
1 T-TAGCACATTAGTGCTCTCTG
70454596 GTTAATAGTG
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
20 2 0.05
21 18 0.46
22 19 0.49
ACGTcount: A:0.19, C:0.25, G:0.17, T:0.39
Consensus pattern (21 bp):
TTAGCACATTAGTGCTCTCTG
Found at i:70457651 original size:19 final size:19
Alignment explanation
Indices: 70457635--70457672 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
70457625 CATAATTTTC
70457635 AAAAATTCCAAATATTTAT
1 AAAAATTCCAAATATTTAT
*
70457654 AAAAATTTCAAAT-TTTAT
1 AAAAATTCCAAATATTTAT
70457672 A
1 A
70457673 TTTTTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAAATTCCAAATATTTAT
Found at i:70463437 original size:17 final size:17
Alignment explanation
Indices: 70463415--70463447 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
70463405 AATGAAAATG
70463415 TAAATAA-AACATATAAA
1 TAAATAATAACA-ATAAA
70463432 TAAATAATAACAATAA
1 TAAATAATAACAATAA
70463448 TGATAGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAATAATAACAATAAA
Found at i:70465120 original size:12 final size:11
Alignment explanation
Indices: 70465084--70465117 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
70465074 TAGGAAAATC
70465084 TTATTTTATTT
1 TTATTTTATTT
*
70465095 AT-TTTTATTT
1 TTATTTTATTT
70465105 TTATTTTATTT
1 TTATTTTATTT
70465116 TT
1 TT
70465118 TATATTAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:70472310 original size:175 final size:174
Alignment explanation
Indices: 70472013--70472367 Score: 615
Period size: 175 Copynumber: 2.0 Consensus size: 174
70472003 CAAAATTGAG
* *
70472013 CAAATG-GTGCATCAAGTATTTTAACGAAATTGCAGCAACAAATTCTTGATTGAAGCAAGACACC
1 CAAATGAGTGCATCAAGTATTTTAACGAAATTGCAGCAACAAATTATCGATTGAAGCAAGACACC
* * *
70472077 AACATATTAAAGAGCCACGGTGAAAACAATCACCTAAATGCTGTTGCATCTTCACATGAAATTAC
66 AACATATTAAAGAGCCACGATGAAAACAATCACCCAAATGCTGTTACATCTTCACATGAAATTAC
70472142 AGCACA-CCAAGAAGGATAGAGAGAGACCATGGTGATTAGCTCTCA
131 AGCACACCCAAGAAGGATA-A-AGAGACCATGGTGATTAGCTCTCA
70472187 CAAATGAGTGCATCAAGTATTTTAACGAAATTGCAGCAACAAATTATCGATTGAAGCAAGACACC
1 CAAATGAGTGCATCAAGTATTTTAACGAAATTGCAGCAACAAATTATCGATTGAAGCAAGACACC
* *
70472252 AACATATTAGAGAGCCACGATGAAAACAATCACCCAAATGTTGTTACATCTTCACATGAAATTAC
66 AACATATTAAAGAGCCACGATGAAAACAATCACCCAAATGCTGTTACATCTTCACATGAAATTAC
70472317 AGCACACCCAAGAAGGATAAAGAGACCATGGTGATTAGCTCTCA
131 AGCACACCCAAGAAGGATAAAGAGACCATGGTGATTAGCTCTCA
70472361 CAAATGA
1 CAAATGA
70472368 AGCAAATTGC
Statistics
Matches: 172, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
174 37 0.22
175 123 0.72
176 12 0.07
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.22
Consensus pattern (174 bp):
CAAATGAGTGCATCAAGTATTTTAACGAAATTGCAGCAACAAATTATCGATTGAAGCAAGACACC
AACATATTAAAGAGCCACGATGAAAACAATCACCCAAATGCTGTTACATCTTCACATGAAATTAC
AGCACACCCAAGAAGGATAAAGAGACCATGGTGATTAGCTCTCA
Found at i:70481582 original size:16 final size:16
Alignment explanation
Indices: 70481551--70481584 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
70481541 TCAACAATAT
70481551 TAAAATAAATTATAAA
1 TAAAATAAATTATAAA
70481567 TAAAACTAAATT-TAAA
1 TAAAA-TAAATTATAAA
70481583 TA
1 TA
70481585 GATAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAATAAATTATAAA
Found at i:70482980 original size:18 final size:18
Alignment explanation
Indices: 70482957--70482992 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
70482947 GTTATATAAC
*
70482957 TTTAATTTATTAATATTT
1 TTTAATTAATTAATATTT
*
70482975 TTTAATTAATTGATATTT
1 TTTAATTAATTAATATTT
70482993 AATTAATTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTAATTAATTAATATTT
Found at i:70486063 original size:30 final size:30
Alignment explanation
Indices: 70486027--70486086 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
70486017 ACATTAGGTT
70486027 TAGGATGGGAGCTTTTATATTGTAATTGGG
1 TAGGATGGGAGCTTTTATATTGTAATTGGG
*
70486057 TAGGATGGGAGCTTTTATATTTTAATTGGG
1 TAGGATGGGAGCTTTTATATTGTAATTGGG
70486087 GGTATTTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.23, C:0.03, G:0.32, T:0.42
Consensus pattern (30 bp):
TAGGATGGGAGCTTTTATATTGTAATTGGG
Found at i:70487473 original size:27 final size:27
Alignment explanation
Indices: 70487430--70487491 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 27
70487420 TATTTTTAAT
70487430 TCTATTATTATACTTTTTAAAATATTTA
1 TCTATTATTATACTTTTTAAAAT-TTTA
* *
70487458 TCTATTTTTATATTTTTTAAAATTTTA
1 TCTATTATTATACTTTTTAAAATTTTA
*
70487485 TATATTA
1 TCTATTA
70487492 ATATTTCCTG
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
27 9 0.30
28 21 0.70
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (27 bp):
TCTATTATTATACTTTTTAAAATTTTA
Found at i:70492886 original size:27 final size:27
Alignment explanation
Indices: 70492856--70492907 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
70492846 TTTAAAACGT
*
70492856 AAATTACAAATATAATTTTATAAATAA
1 AAATTACAAAAATAATTTTATAAATAA
* * *
70492883 AAATTATAAAAATTATTTTTTAAAT
1 AAATTACAAAAATAATTTTATAAAT
70492908 CCATATTATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (27 bp):
AAATTACAAAAATAATTTTATAAATAA
Found at i:70495430 original size:35 final size:40
Alignment explanation
Indices: 70495377--70495453 Score: 94
Period size: 39 Copynumber: 2.0 Consensus size: 40
70495367 TATAAAATTC
70495377 TAAAAAATTATATTTA-TT-T-GT-GTTTTTTAATAT-AA
1 TAAAAAATTATATTTATTTATGGTAGTTTTTTAATATGAA
*
70495412 TAAAACATT-TATTATATTTATGGTAGTTTTTTAATATGAA
1 TAAAAAATTATATT-TATTTATGGTAGTTTTTTAATATGAA
70495452 TA
1 TA
70495454 CTTTTTAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
34 4 0.11
35 10 0.29
36 2 0.06
37 1 0.03
38 2 0.06
39 12 0.34
40 4 0.11
ACGTcount: A:0.39, C:0.01, G:0.08, T:0.52
Consensus pattern (40 bp):
TAAAAAATTATATTTATTTATGGTAGTTTTTTAATATGAA
Found at i:70507599 original size:19 final size:20
Alignment explanation
Indices: 70507563--70507601 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
70507553 AATTTAAAAG
* *
70507563 TTTTTGAAAATTTATAATTA
1 TTTTTAAAAATATATAATTA
70507583 TTTTTAAAAATAT-TAATTA
1 TTTTTAAAAATATATAATTA
70507602 AAAAGCTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (20 bp):
TTTTTAAAAATATATAATTA
Found at i:70508249 original size:31 final size:31
Alignment explanation
Indices: 70508173--70508250 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
70508163 TATAGATATT
* *
70508173 AAAT-TAAACATTAAAATTAAACTTGAATGTC
1 AAATCTAAACACT-AAATTAAAATTGAATGTC
* *
70508204 AAATTTAAACACTAAATTAAATATTGAA-GTT
1 AAATCTAAACACTAAATTAAA-ATTGAATGTC
*
70508235 AAATCTAAATACTAAA
1 AAATCTAAACACTAAA
70508251 CCATATATTA
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
31 28 0.70
32 12 0.30
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.32
Consensus pattern (31 bp):
AAATCTAAACACTAAATTAAAATTGAATGTC
Found at i:70520236 original size:22 final size:21
Alignment explanation
Indices: 70520196--70520245 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
70520186 GCCTCCAGCG
70520196 CGCCTCCGTACGACCCCCTGCA
1 CGCCTCCGTACGACCCCCT-CA
* *
70520218 CGCCTCCGTATG-CCACCCTCG
1 CGCCTCCGTACGACC-CCCTCA
70520239 CGCCTCC
1 CGCCTCC
70520246 ACGTTGCCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.10, C:0.56, G:0.18, T:0.16
Consensus pattern (21 bp):
CGCCTCCGTACGACCCCCTCA
Found at i:70522429 original size:132 final size:131
Alignment explanation
Indices: 70522222--70522477 Score: 358
Period size: 132 Copynumber: 1.9 Consensus size: 131
70522212 TTATTCATTT
* *
70522222 AAAAATTCTTTAAAACAAAGACAATGTTCGATGTTTGACAATTCGGGAATCGTGCCCTATCGTGC
1 AAAAATTCTTTAAAACAAAGACAACGTTCGATGTTAGACAATTCGGGAATCGTGCCCTATCGTGC
* * * *
70522287 TGGGTTGCAA-TTTCTCGTTTGTTCAAAATAATTGAATAT-TCTTTTGGAATTTCACTCATGTCT
66 TGGGTTGCAATTTTC-CATTTGTTCAAAATAATCGAACATCCCTTTT-GAATTTCACTCATGTCT
70522350 TTA
129 TTA
* *
70522353 AAAAATTCTTTAAAATGAAGGA-AACGTTCGATGCTTAG-CAATTCGGGGAATCGTGCCCTATCG
1 AAAAATTCTTTAAAA-CAAAGACAACGTTCGATG-TTAGACAATTC-GGGAATCGTGCCCTATCG
*
70522416 TGCTGGGTTGCAATTTTCCATTTGTTCAAAATAATCGAACGTCCCTTTTGAATTTCACTCAT
63 TGCTGGGTTGCAATTTTCCATTTGTTCAAAATAATCGAACATCCCTTTTGAATTTCACTCAT
70522478 ATTTTCTAAA
Statistics
Matches: 111, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
131 31 0.28
132 71 0.64
133 9 0.08
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (131 bp):
AAAAATTCTTTAAAACAAAGACAACGTTCGATGTTAGACAATTCGGGAATCGTGCCCTATCGTGC
TGGGTTGCAATTTTCCATTTGTTCAAAATAATCGAACATCCCTTTTGAATTTCACTCATGTCTTT
A
Found at i:70538987 original size:14 final size:14
Alignment explanation
Indices: 70538954--70538994 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
70538944 TTTTTATTTC
*
70538954 AAAATGTCACAAAA
1 AAAATGTAACAAAA
70538968 ACAAATGTAACAAAA
1 A-AAATGTAACAAAA
*
70538983 AAAATTTAACAA
1 AAAATGTAACAA
70538995 TGTTAATAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.66, C:0.12, G:0.05, T:0.17
Consensus pattern (14 bp):
AAAATGTAACAAAA
Done.