Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 223 of 259
Found at i:70541209 original size:15 final size:15
Alignment explanation
Indices: 70541189--70541238 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
70541179 TATATTAAAA
*
70541189 AAATTTTATAAACTT
1 AAATTTTATAAATTT
*
70541204 AAA-TTTA-ATATTT
1 AAATTTTATAAATTT
70541217 AAATTTT-TAATATTT
1 AAATTTTATAA-ATTT
70541232 AAATTTT
1 AAATTTT
70541239 CGACACTTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 7 0.24
14 8 0.28
15 14 0.48
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
AAATTTTATAAATTT
Found at i:70541779 original size:11 final size:9
Alignment explanation
Indices: 70541750--70541865 Score: 58
Period size: 10 Copynumber: 12.3 Consensus size: 9
70541740 ATTATGGCTA
70541750 TTATAATTT
1 TTATAATTT
70541759 TTATATATTT
1 TTATA-ATTT
70541769 GTCTATAA-TT
1 -T-TATAATTT
*
70541779 TTAAAATTTT
1 TTATAA-TTT
70541789 TTCATAATATT
1 TT-ATAAT-TT
*
70541800 TTATAATAT
1 TTATAATTT
* *
70541809 ATA-AAATT
1 TTATAATTT
*
70541817 TTA-CATTT
1 TTATAATTT
*
70541825 TTCTAAATTT
1 TTAT-AATTT
70541835 ATTATAATTT
1 -TTATAATTT
* *
70541845 ATAAAATTT
1 TTATAATTT
*
70541854 TAATAATTT
1 TTATAATTT
70541863 TTA
1 TTA
70541866 GGATTAAATA
Statistics
Matches: 79, Mismatches: 18, Indels: 20
0.68 0.15 0.17
Matches are distributed among these distances:
8 14 0.18
9 24 0.30
10 25 0.32
11 12 0.15
12 4 0.05
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (9 bp):
TTATAATTT
Found at i:70541817 original size:17 final size:17
Alignment explanation
Indices: 70541792--70541862 Score: 61
Period size: 18 Copynumber: 4.0 Consensus size: 17
70541782 AAATTTTTTC
* *
70541792 ATAATATTTTATAATAT
1 ATAAAATTTTATAATTT
* *
70541809 ATAAAATTTTACATTTTT
1 ATAAAATTTTATA-ATTT
* *
70541827 CTAAATTTATTATAATTT
1 ATAAAATT-TTATAATTT
70541845 ATAAAATTTTAATAATTT
1 ATAAAATTTT-ATAATTT
70541863 TTAGGATTAA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
17 13 0.32
18 24 0.59
19 4 0.10
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
ATAAAATTTTATAATTT
Found at i:70541819 original size:38 final size:38
Alignment explanation
Indices: 70541775--70541864 Score: 107
Period size: 36 Copynumber: 2.4 Consensus size: 38
70541765 ATTTGTCTAT
70541775 AATTTTAAAATTTTTTC-ATAATATT-TTATAATATATAA
1 AATTTTAAAATTTTTTCTA-AAT-TTATTATAATATATAA
* *
70541813 AATTTT-ACA-TTTTTCTAAATTTATTATAATTTATAA
1 AATTTTAAAATTTTTTCTAAATTTATTATAATATATAA
70541849 AATTTTAATAATTTTT
1 AATTTTAA-AATTTTT
70541865 AGGATTAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
35 2 0.05
36 27 0.61
37 4 0.09
38 7 0.16
39 4 0.09
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (38 bp):
AATTTTAAAATTTTTTCTAAATTTATTATAATATATAA
Found at i:70541849 original size:18 final size:18
Alignment explanation
Indices: 70541792--70541862 Score: 58
Period size: 17 Copynumber: 4.0 Consensus size: 18
70541782 AAATTTTTTC
* *
70541792 ATAATATTTT-ATAATAT
1 ATAAAATTTTAATAATTT
*
70541809 ATAAAATTTTACAT-TTTT
1 ATAAAATTTTA-ATAATTT
* *
70541827 CT-AAATTTATTATAATTT
1 ATAAAATTT-TAATAATTT
70541845 ATAAAATTTTAATAATTT
1 ATAAAATTTTAATAATTT
70541863 TTAGGATTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 9
0.71 0.14 0.16
Matches are distributed among these distances:
17 17 0.41
18 16 0.39
19 8 0.20
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
ATAAAATTTTAATAATTT
Found at i:70553124 original size:15 final size:15
Alignment explanation
Indices: 70553104--70553133 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
70553094 TTTAATCCTT
*
70553104 TATAAATTATAAAAA
1 TATAAACTATAAAAA
70553119 TATAAACTATAAAAA
1 TATAAACTATAAAAA
70553134 ATTAAAATTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (15 bp):
TATAAACTATAAAAA
Found at i:70555879 original size:22 final size:22
Alignment explanation
Indices: 70555854--70555907 Score: 108
Period size: 22 Copynumber: 2.5 Consensus size: 22
70555844 TGAGGCAAAG
70555854 CCTCCAGTACGTGGACAAGCCA
1 CCTCCAGTACGTGGACAAGCCA
70555876 CCTCCAGTACGTGGACAAGCCA
1 CCTCCAGTACGTGGACAAGCCA
70555898 CCTCCAGTAC
1 CCTCCAGTAC
70555908 TTCCTCCGTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.26, C:0.39, G:0.20, T:0.15
Consensus pattern (22 bp):
CCTCCAGTACGTGGACAAGCCA
Found at i:70557562 original size:26 final size:26
Alignment explanation
Indices: 70557526--70557635 Score: 166
Period size: 26 Copynumber: 4.2 Consensus size: 26
70557516 CATGAAATTC
*
70557526 TTATCATGAAACATTAACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
70557552 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
70557578 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
* * *
70557604 TTATCATGGAACATTTACCTAATCTA
1 TTATCATGAAACATTTACCTAACCCA
70557630 TTATCA
1 TTATCA
70557636 ATTTGTATCA
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:70559443 original size:18 final size:17
Alignment explanation
Indices: 70559420--70559467 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
70559410 TTTTAATATC
70559420 ATTATTATTATTTCTAAT
1 ATTATTATTATTTC-AAT
*
70559438 ATTATTAATCTA-ATCAAT
1 ATTATT-AT-TATTTCAAT
70559456 ATTATTATTATT
1 ATTATTATTATT
70559468 ATTATTACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
16 2 0.08
17 2 0.08
18 15 0.60
19 4 0.16
20 2 0.08
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
ATTATTATTATTTCAAT
Found at i:70559500 original size:21 final size:21
Alignment explanation
Indices: 70559467--70559524 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
70559457 TTATTATTAT
70559467 TATTATTACTATATTA-GTGTA
1 TATTATTACTATA-TACGTGTA
* *
70559488 TATTCTTATTATATACGTGTA
1 TATTATTACTATATACGTGTA
70559509 TA-TATATACTTATATA
1 TATTAT-TAC-TATATA
70559525 TAACACTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 4 0.13
21 20 0.67
22 6 0.20
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (21 bp):
TATTATTACTATATACGTGTA
Found at i:70559899 original size:149 final size:142
Alignment explanation
Indices: 70559458--70559899 Score: 423
Period size: 149 Copynumber: 3.0 Consensus size: 142
70559448 TAATCAATAT
* * *
70559458 TATTATTATTATTATTACTATATTAGTGTATATTCTTATTATATACGTGTATATATATACTTATA
1 TATTATTA-TATTATTA-TATATTAGTGTATATTCTTATTATACATGTATATATATATACTTATA
* *
70559523 TATAACACTATTTTTAATTACTTTATTTTTAATATTATTATATTATGTTTATTTTTTTGTATTTC
64 TATAACACTATTTTTAATTACTTTA-TTTTAATA-TCTT-TATTATATTTA--TTTTTGTATTTC
* *
70559588 ATTATTATTTCTAGTATTA-
124 AATATTATTT-TATTATTAG
* *
70559607 TATTA-T-TATTATTAT-TAATAGTGTAT-TTCTTATTATATACATGTGA-ATATATATAGTTAT
1 TATTATTATATTATTATATATTAGTGTATATTCTTA-T-TATACATGT-ATATATATATACTTAT
* * **
70559667 ATATAACACTATTTTTAATTACTTTATTTTAATATCATTATTATATTATATTTACTT-TTTTTGT
63 ATATAACACTATTTTTAATTACTTTATTTTAATATCTTTATTATATT-TATTT--TTGTATTTCA
* *
70559731 AT-TTCATTGCTATTGTTAG
125 ATATT-ATT-TTATTATTAG
* *
70559750 TATTATTATCATTATTATATATTAGTGTATATTTTTATTATACATGTATATGTATATATATTTAT
1 TATTATTAT-ATTATTATATATTAGTGTATATTCTTATTATACATGTATA--TATATATACTTAT
** * * *
70559815 ATATAGTATTATTTTTTTATTACTTTATTTTAATATCTTTATTATATTTGCTTTTTGTATTTCAA
63 ATATAACACTA-TTTTTAATTACTTTATTTTAATATCTTTATTATATTT-ATTTTTGTATTTCAA
70559880 TATTATTATTATATATTAG
126 TATTATT-TTAT-TATTAG
70559899 T
1 T
70559900 GTATATTTTT
Statistics
Matches: 241, Mismatches: 30, Indels: 44
0.77 0.10 0.14
Matches are distributed among these distances:
141 5 0.02
142 22 0.09
143 17 0.07
144 20 0.08
145 49 0.20
146 26 0.11
147 13 0.05
148 39 0.16
149 50 0.21
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.58
Consensus pattern (142 bp):
TATTATTATATTATTATATATTAGTGTATATTCTTATTATACATGTATATATATATACTTATATA
TAACACTATTTTTAATTACTTTATTTTAATATCTTTATTATATTTATTTTTGTATTTCAATATTA
TTTTATTATTAG
Found at i:70559912 original size:21 final size:21
Alignment explanation
Indices: 70559879--70559945 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 21
70559869 TTGTATTTCA
70559879 ATATTATTATTATATATTAGTGT
1 ATATT-TT-TTATATATTAGTGT
*
70559902 ATATTTTTTATATA-T-GTAT
1 ATATTTTTTATATATTAGTGT
*
70559921 ATATTTTTAATATATATA-TGT
1 ATATTTTTTATATAT-TAGTGT
70559942 ATAT
1 ATAT
70559946 ATTTATGTAG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
19 16 0.42
20 1 0.03
21 14 0.37
22 2 0.05
23 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (21 bp):
ATATTTTTTATATATTAGTGT
Found at i:70559919 original size:17 final size:17
Alignment explanation
Indices: 70559899--70559939 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
70559889 TATATATTAG
70559899 TGTATAT-TTTTTATATA
1 TGTATATATTTTTA-ATA
70559916 TGTATATATTTTTAATA
1 TGTATATATTTTTAATA
*
70559933 TATATAT
1 TGTATAT
70559940 GTATATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (17 bp):
TGTATATATTTTTAATA
Found at i:70559923 original size:19 final size:21
Alignment explanation
Indices: 70559883--70560128 Score: 70
Period size: 22 Copynumber: 11.5 Consensus size: 21
70559873 ATTTCAATAT
*
70559883 TATTATTATATAT-TA-GTGTA
1 TATT-TTATATATATATGTATA
70559903 TATTTT-T-TATATATGTATA
1 TATTTTATATATATATGTATA
70559922 TATTTTTAATATATATATGTATA
1 TA-TTTT-ATATATATATGTATA
* *
70559945 TATTTATGTAGCATTATTAATAGTAGT-
1 TATTT-TATA-TA-TA-T-AT-GTA-TA
* * *
70559972 TTTTTTATTTCTAATATGTATA
1 TATTTTATATAT-ATATGTATA
* * * *
70559994 TATTATGTAAATAT-TTTAATA
1 TATTTTATATATATATGT-ATA
* *
70560015 CTATATTATGTATATA--TATA
1 -TATTTTATATATATATGTATA
* *
70560035 T-TTTTATATATGTTATGTACA
1 TATTTTATATAT-ATATGTATA
*
70560056 T-TTTT-T-TAAATAT-TATA
1 TATTTTATATATATATGTATA
*
70560073 TTTTTTATATATTATGATGTATA
1 TATTTTATATA-TAT-ATGTATA
*
70560096 TATTTTA-ATATCATAAGTTATA
1 TATTTTATATAT-ATATG-TATA
*
70560118 TATTTTTTATA
1 TATTTTATATA
70560129 CTATCTTATG
Statistics
Matches: 165, Mismatches: 31, Indels: 57
0.65 0.12 0.23
Matches are distributed among these distances:
17 7 0.04
18 18 0.11
19 14 0.08
20 16 0.10
21 20 0.12
22 41 0.25
23 31 0.19
24 4 0.02
25 2 0.01
26 4 0.02
27 7 0.04
28 1 0.01
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
TATTTTATATATATATGTATA
Found at i:70560078 original size:16 final size:16
Alignment explanation
Indices: 70560057--70560087 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
70560047 TTATGTACAT
70560057 TTTTTTAAATATTATA
1 TTTTTTAAATATTATA
*
70560073 TTTTTTATATATTAT
1 TTTTTTAAATATTAT
70560088 GATGTATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTTTAAATATTATA
Found at i:70560160 original size:20 final size:22
Alignment explanation
Indices: 70560135--70560177 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
70560125 TATACTATCT
70560135 TATGTA-TG-TATTTCTAATAC
1 TATGTATTGATATTTCTAATAC
70560155 TATGTATTGTATATTTCTAATAC
1 TATGTATTG-ATATTTCTAATAC
70560178 CATTATTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 6 0.30
21 2 0.10
23 12 0.60
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.51
Consensus pattern (22 bp):
TATGTATTGATATTTCTAATAC
Found at i:70560442 original size:26 final size:26
Alignment explanation
Indices: 70560380--70560443 Score: 78
Period size: 24 Copynumber: 2.5 Consensus size: 26
70560370 TAATATATAA
* *
70560380 ATTATGTATACATTTTTAAATACTAT
1 ATTATGTATATATTTTTAAATACCAT
*
70560406 ATTATATATATA-TTTT-AATACCAT
1 ATTATGTATATATTTTTAAATACCAT
*
70560430 ATTATGTACATATT
1 ATTATGTATATATT
70560444 ATTATTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
24 17 0.53
25 5 0.16
26 10 0.31
ACGTcount: A:0.39, C:0.08, G:0.03, T:0.50
Consensus pattern (26 bp):
ATTATGTATATATTTTTAAATACCAT
Found at i:70560560 original size:18 final size:17
Alignment explanation
Indices: 70560513--70560570 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
70560503 ATTATACGTG
*
70560513 TATATA-TATACTTTTA
1 TATATAGTATATTTTTA
70560529 TATATAGTATTATTTTTA
1 TATATAGTA-TATTTTTA
*
70560547 TATATCATTATATTTATTA
1 TATAT-AGTATATTT-TTA
70560566 T-TATA
1 TATATA
70560571 CTTATTATTT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
16 6 0.17
17 3 0.08
18 20 0.56
19 7 0.19
ACGTcount: A:0.36, C:0.03, G:0.02, T:0.59
Consensus pattern (17 bp):
TATATAGTATATTTTTA
Found at i:70563889 original size:39 final size:39
Alignment explanation
Indices: 70563828--70563936 Score: 120
Period size: 34 Copynumber: 2.9 Consensus size: 39
70563818 CAGTGATGTT
* *
70563828 TATCCGGACTTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
*
70563867 TATCCGGACTTAAGGTCCGCAGGTTATGTGC-----TTA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
70563901 TAACAGGACTTAAAGTCCGCAGGCTACGTGCTGGAA
1 TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAA
70563937 ATATGTCCTG
Statistics
Matches: 57, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
34 29 0.51
39 28 0.49
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:70576847 original size:56 final size:56
Alignment explanation
Indices: 70576684--70576939 Score: 293
Period size: 56 Copynumber: 4.8 Consensus size: 56
70576674 TGATAATAAC
* * ** *
70576684 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGA---T--GG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATGATCTTAAGG
* * *
70576736 -TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTC---ATC-T-CGG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
** *
70576786 -TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTTAAGG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
70576841 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
* * *
70576897 ATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
70576940 TTACCCAAAT
Statistics
Matches: 177, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
47 1 0.01
49 1 0.01
50 44 0.25
51 33 0.19
53 3 0.02
54 1 0.01
55 2 0.01
56 92 0.52
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (56 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
Found at i:70577055 original size:13 final size:13
Alignment explanation
Indices: 70577034--70577065 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
70577024 GCTTGGATCA
*
70577034 TCATCAAATAAAT
1 TCATAAAATAAAT
70577047 TCATAAAATAAAT
1 TCATAAAATAAAT
70577060 TCATAA
1 TCATAA
70577066 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:70577311 original size:30 final size:29
Alignment explanation
Indices: 70577277--70577333 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
70577267 CCTCGACTCT
*
70577277 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTAC-ATTTTGCCCCTA
*
70577307 AACTTTTACATAATTACATTTTGCCCC
1 AACTTTTACAAAATTACATTTTGCCCC
70577334 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.32, C:0.25, G:0.04, T:0.40
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTGCCCCTA
Found at i:70592448 original size:126 final size:126
Alignment explanation
Indices: 70592224--70592461 Score: 379
Period size: 126 Copynumber: 1.9 Consensus size: 126
70592214 GTTTTAGCCT
* * *
70592224 TAAGAGGATATTCGAATATTCAAAACAAACAAGAAAGCGAAGCCCAATATGTTAGGGCACAATTC
1 TAAGAGGATATTCGAATATTCAAAACAAAAAAGAAAGCGAAACCCAATACGTTAGGGCACAATTC
70592289 TTCGAATTCTTTAAATACCGAACATTAACTTTA-TTTTGAAAATTTTTTAGAGCGAACTGG
66 TTCGAATTCTTTAAATACCGAACATTAACTTTATTTTTGAAAATTTTTTAGAGCGAACTGG
* * * *
70592349 TAAGAGGATATTTGAATATTCAAGACAAATAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAA-AAAGAAAGCGAAACCCAATACGTTAGGGCACAATT
**
70592414 CTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTTGAAAATTTT
65 CTTCGAATTCTTTAAATACCGAACATTAACTTTATTTTTGAAAATTTT
70592462 GAGAGAAGAT
Statistics
Matches: 102, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
125 27 0.26
126 62 0.61
127 13 0.13
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAAAAAGAAAGCGAAACCCAATACGTTAGGGCACAATTC
TTCGAATTCTTTAAATACCGAACATTAACTTTATTTTTGAAAATTTTTTAGAGCGAACTGG
Found at i:70592933 original size:14 final size:14
Alignment explanation
Indices: 70592914--70592944 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
70592904 ATATATTTAC
*
70592914 ATAATAAATATATA
1 ATAATAAATAAATA
70592928 ATAATAAATAAATA
1 ATAATAAATAAATA
70592942 ATA
1 ATA
70592945 TAATAATATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:70592945 original size:19 final size:18
Alignment explanation
Indices: 70592916--70592952 Score: 65
Period size: 19 Copynumber: 2.0 Consensus size: 18
70592906 ATATTTACAT
70592916 AATAAATATATAATAATA
1 AATAAATATATAATAATA
70592934 AATAAATAATATAATAATA
1 AATAAAT-ATATAATAATA
70592953 TGAAACATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATATATAATAATA
Found at i:70592991 original size:60 final size:60
Alignment explanation
Indices: 70592920--70593058 Score: 158
Period size: 60 Copynumber: 2.3 Consensus size: 60
70592910 TTACATAATA
* * *
70592920 AATATATAATAATAAATAAATA-ATATAA-TAATATGAA-ACATAACTCAAATTAATTAAATT
1 AATATAAAATAATAAA-AAATATATAAAATTAATAAGAATA-A-AACTCAAATTAATTAAATT
* *
70592980 AATATAAAATAATAAAAAATATATAAAATTAATAAGAATAAAGCTCAAATTAATTAATTT
1 AATATAAAATAATAAAAAATATATAAAATTAATAAGAATAAAACTCAAATTAATTAAATT
* *
70593040 AACAGTAAAATAACAAAAA
1 AATA-TAAAATAATAAAAA
70593059 TAAAAAAAGG
Statistics
Matches: 68, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
59 5 0.07
60 40 0.59
61 22 0.32
62 1 0.01
ACGTcount: A:0.63, C:0.05, G:0.03, T:0.29
Consensus pattern (60 bp):
AATATAAAATAATAAAAAATATATAAAATTAATAAGAATAAAACTCAAATTAATTAAATT
Found at i:70592992 original size:10 final size:10
Alignment explanation
Indices: 70592920--70593013 Score: 54
Period size: 10 Copynumber: 9.4 Consensus size: 10
70592910 TTACATAATA
*
70592920 AATATATAAT
1 AATATAAAAT
*
70592930 AATAAATAAAT
1 AATATA-AAAT
70592941 AATAT--AAT
1 AATATAAAAT
70592949 AATATGAAACAT
1 AATAT-AAA-AT
* *
70592961 AACT-CAAATT
1 AA-TATAAAAT
*
70592971 AAT-TAAATT
1 AATATAAAAT
70592980 AATATAAAAT
1 AATATAAAAT
*
70592990 AATAAAAAAT
1 AATATAAAAT
70593000 -ATATAAAATT
1 AATATAAAA-T
70593010 AATA
1 AATA
70593014 AGAATAAAGC
Statistics
Matches: 66, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
8 8 0.12
9 16 0.24
10 23 0.35
11 14 0.21
12 4 0.06
13 1 0.02
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (10 bp):
AATATAAAAT
Found at i:70593808 original size:133 final size:134
Alignment explanation
Indices: 70593575--70593844 Score: 380
Period size: 133 Copynumber: 2.0 Consensus size: 134
70593565 GATCTGTTGT
* * * * **
70593575 AATTTGATCTACTTTACTCTTGCTCAGTAAAGATAAGATCTGGTATGTTTAGCCTGCTCCACTCC
1 AATTTAATCTACTTTACTCCTGCTCAGCAAAGATAAGATCTAGTA-GAATAGCCTGCTCCACTCC
* * * *
70593640 TGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTACCGATACATGGAGATAAGATTC
65 TGCTCAATGAAGATAAGGCTGATGACTGAAATCTGCTACATTACCGATACATGGAGATAAGATTC
*
70593705 ATCAA
130 ACCAA
* *
70593710 AATTTAATCTACTTTGCTCCTGCTCAGCGAAGATAAGATCTAGTA-AATAGCCTGCTCCACTCCT
1 AATTTAATCTACTTTACTCCTGCTCAGCAAAGATAAGATCTAGTAGAATAGCCTGCTCCACTCCT
* * *
70593774 GCTCAATGAAGATAAGGCTGGTGGCTGAAATCTGCTACATTGCCGATACATGGAGATAAGATTCA
66 GCTCAATGAAGATAAGGCTGATGACTGAAATCTGCTACATTACCGATACATGGAGATAAGATTCA
70593839 CCAA
131 CCAA
70593843 AA
1 AA
70593845 CTTGATTTGC
Statistics
Matches: 119, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
133 80 0.67
135 39 0.33
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.29
Consensus pattern (134 bp):
AATTTAATCTACTTTACTCCTGCTCAGCAAAGATAAGATCTAGTAGAATAGCCTGCTCCACTCCT
GCTCAATGAAGATAAGGCTGATGACTGAAATCTGCTACATTACCGATACATGGAGATAAGATTCA
CCAA
Found at i:70593863 original size:133 final size:133
Alignment explanation
Indices: 70593624--70593869 Score: 357
Period size: 133 Copynumber: 1.8 Consensus size: 133
70593614 CTGGTATGTT
* * * *
70593624 TAGCCTGCTCCACTCCTGCTCAGTGAAGATAAGGCTGATGATTGGAATCTGCTCCATTACCGATA
1 TAGCCTGCTCCACTCCTGCTCAATGAAGATAAGGCTGATGACTGAAATCTGCTACATTACCGATA
* * ***
70593689 CATGGAGATAAGATTCATCAAAATTTAATCTACTTTGCTCCTGCTCAGCGAAGATAAGATCTAGT
66 CATGGAGATAAGATTCACCAAAACTTAATCTACTCCACTCCTGCTCAGCGAAGATAAGATCTAGT
70593754 AAA
131 AAA
* * *
70593757 TAGCCTGCTCCACTCCTGCTCAATGAAGATAAGGCTGGTGGCTGAAATCTGCTACATTGCCGATA
1 TAGCCTGCTCCACTCCTGCTCAATGAAGATAAGGCTGATGACTGAAATCTGCTACATTACCGATA
* * *
70593822 CATGGAGATAAGATTCACCAAAACTTGATTTGCTCCACTCCTGCTCAG
66 CATGGAGATAAGATTCACCAAAACTTAATCTACTCCACTCCTGCTCAG
70593870 TGGGATAAGG
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
133 98 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (133 bp):
TAGCCTGCTCCACTCCTGCTCAATGAAGATAAGGCTGATGACTGAAATCTGCTACATTACCGATA
CATGGAGATAAGATTCACCAAAACTTAATCTACTCCACTCCTGCTCAGCGAAGATAAGATCTAGT
AAA
Found at i:70595181 original size:26 final size:27
Alignment explanation
Indices: 70595152--70595218 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 27
70595142 TTTCTTTTCA
70595152 TTCTCTTTTTTATTTTTCTC-TT-CTTT
1 TTCTCTTTTTT-TTTTTCTCTTTCCTTT
**
70595178 TTCT-TTTCCTTTTTTCTCTTTCCTTT
1 TTCTCTTTTTTTTTTTCTCTTTCCTTT
70595204 TTCTCTTTTTTTTTT
1 TTCTCTTTTTTTTTT
70595219 GAAAGTGAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
24 8 0.24
25 6 0.18
26 12 0.35
27 8 0.24
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (27 bp):
TTCTCTTTTTTTTTTTCTCTTTCCTTT
Found at i:70595193 original size:13 final size:13
Alignment explanation
Indices: 70595175--70595212 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
70595165 TTTTCTCTTC
70595175 TTTTTCTTTTCCT
1 TTTTTCTTTTCCT
70595188 TTTTTCTCTTTCCT
1 TTTTTCT-TTTCCT
70595202 TTTTCTCTTTT
1 TTTT-TCTTTT
70595213 TTTTTTGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 7 0.30
14 13 0.57
15 3 0.13
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTCTTTTCCT
Found at i:70595217 original size:13 final size:13
Alignment explanation
Indices: 70595152--70595218 Score: 57
Period size: 13 Copynumber: 5.2 Consensus size: 13
70595142 TTTCTTTTCA
70595152 TTCTCTTTTTTATT
1 TTCTCTTTTTT-TT
* *
70595166 TT-TCTCTTCTTT
1 TTCTCTTTTTTTT
*
70595178 TTCT-TTTCCTTTT
1 TTCTCTTT-TTTTT
**
70595191 TTCTCTTTCCTTT
1 TTCTCTTTTTTTT
70595204 TTCTCTTTTTTTT
1 TTCTCTTTTTTTT
70595217 TT
1 TT
70595219 GAAAGTGAAG
Statistics
Matches: 42, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
12 6 0.14
13 31 0.74
14 5 0.12
ACGTcount: A:0.01, C:0.21, G:0.00, T:0.78
Consensus pattern (13 bp):
TTCTCTTTTTTTT
Found at i:70597253 original size:47 final size:45
Alignment explanation
Indices: 70597133--70597256 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 45
70597123 TTTACATAAT
* * * * *
70597133 GATGCCATAGCCCAGCTATGGTCTTACACGTAATCACATATCTCACT
1 GATGCCATATCCCAGATATGGTCTTATAC--AATCACATATCACACC
* *
70597180 GATGTCATATCCCAGATATGGTCTTATACAATAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTATACAAT--CACATATCACACC
70597227 GATGCCATATCCCAGATATGGTCTTATACA
1 GATGCCATATCCCAGATATGGTCTTATACA
70597257 GAAATCACTT
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
45 3 0.04
47 64 0.96
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.29
Consensus pattern (45 bp):
GATGCCATATCCCAGATATGGTCTTATACAATCACATATCACACC
Found at i:70597273 original size:7 final size:7
Alignment explanation
Indices: 70597261--70597310 Score: 100
Period size: 7 Copynumber: 7.1 Consensus size: 7
70597251 TATACAGAAA
70597261 TCACTTG
1 TCACTTG
70597268 TCACTTG
1 TCACTTG
70597275 TCACTTG
1 TCACTTG
70597282 TCACTTG
1 TCACTTG
70597289 TCACTTG
1 TCACTTG
70597296 TCACTTG
1 TCACTTG
70597303 TCACTTG
1 TCACTTG
70597310 T
1 T
70597311 AGCCAAAGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.44
Consensus pattern (7 bp):
TCACTTG
Found at i:70597363 original size:31 final size:31
Alignment explanation
Indices: 70597316--70597517 Score: 305
Period size: 31 Copynumber: 6.5 Consensus size: 31
70597306 CTTGTAGCCA
*
70597316 AAGCTACCACTATTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
** * * *
70597347 GTGCTATCATTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
* *
70597378 GAGCTACCACTTTTCACTGATCAGGTAGCCG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
* *
70597409 AAGCTACCACTTTTCACTGATTAGGTAGCAG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
70597440 AAGCTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
*
70597471 AAACTACCACTTTTCACTGATCAGGTAGCTG
1 AAGCTACCACTTTTCACTGATCAGGTAGCTG
70597502 AAGCTACCACTTTTCA
1 AAGCTACCACTTTTCA
70597518 GTTGTCATTT
Statistics
Matches: 155, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 155 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
AAGCTACCACTTTTCACTGATCAGGTAGCTG
Found at i:70597601 original size:50 final size:50
Alignment explanation
Indices: 70597495--70597671 Score: 248
Period size: 50 Copynumber: 3.5 Consensus size: 50
70597485 CACTGATCAG
* * * *
70597495 GTAGCTGAAGCTACCACTTTTCAGTTGTCATTTG-CCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTT-TCATTTGTCC-TTGATCAGATAAGT
* *
70597546 GTAGCCGAAGCTATCACTTATCACTTTCACTTGTCCTTAATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
* * *
70597596 GTAGCCGAAGTTATTACTTATCACTTTTATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
70597646 GTAGCCGAAGCTATCACTTATCACTT
1 GTAGCCGAAGCTATCACTTATCACTT
70597672 GTTTCCATGG
Statistics
Matches: 112, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 88 0.79
51 24 0.21
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.36
Consensus pattern (50 bp):
GTAGCCGAAGCTATCACTTATCACTTTCATTTGTCCTTGATCAGATAAGT
Found at i:70604803 original size:126 final size:126
Alignment explanation
Indices: 70604643--70604886 Score: 389
Period size: 126 Copynumber: 1.9 Consensus size: 126
70604633 GTTTTAGCCT
* *
70604643 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAGCCCAATATGTTAGGGCACAATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAATACGTTAGGGCACAATT
* * *
70604708 CTTCGAATTCTTTAAATACCGAACATTAACTTTATTTTGAAAATTTTTTAGAGCGAACTGG
66 CTTCGAATTATTTAAATACCGAACATTAACTTTATTTTGAAAAATTTTGAGAGCGAACTGG
* * * *
70604769 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAATCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAATACGTTAGGGCACAATT
**
70604834 CTTCGAATTATTTAAATACCGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 CTTCGAATTATTTAAATACCGAACATTAACTTTATTTTGAAAAATTTTGAGAG
70604887 AAGATCAATG
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
126 107 1.00
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.29
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAATACGTTAGGGCACAATT
CTTCGAATTATTTAAATACCGAACATTAACTTTATTTTGAAAAATTTTGAGAGCGAACTGG
Found at i:70605016 original size:13 final size:13
Alignment explanation
Indices: 70605009--70605033 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70604999 ATAATAATAG
70605009 TAATTAATAAAAA
1 TAATTAATAAAAA
70605022 TAATTAATAAAA
1 TAATTAATAAAA
70605034 CAACAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
TAATTAATAAAAA
Found at i:70605135 original size:21 final size:21
Alignment explanation
Indices: 70605097--70605147 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
70605087 TAATAATATT
* *
70605097 AAAAACATGATGATAATAACA
1 AAAAATATGATGACAATAACA
*
70605118 AAAAATATGTTGACAATAACA
1 AAAAATATGATGACAATAACA
**
70605139 TTAAATATG
1 AAAAATATG
70605148 GGGGATAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.57, C:0.08, G:0.10, T:0.25
Consensus pattern (21 bp):
AAAAATATGATGACAATAACA
Found at i:70605364 original size:14 final size:14
Alignment explanation
Indices: 70605345--70605376 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
70605335 ATATATTTAC
*
70605345 ATAATAAATATATA
1 ATAATAAATAAATA
70605359 ATAATAAATAAATA
1 ATAATAAATAAATA
70605373 ATAA
1 ATAA
70605377 AATAATATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
ATAATAAATAAATA
Found at i:70605942 original size:4 final size:4
Alignment explanation
Indices: 70605935--70605972 Score: 76
Period size: 4 Copynumber: 9.5 Consensus size: 4
70605925 TCCTTATATA
70605935 TATT TATT TATT TATT TATT TATT TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TA
70605973 AAAATACCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:70609347 original size:19 final size:19
Alignment explanation
Indices: 70609325--70609362 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
70609315 AAAGTTCTAG
*
70609325 AAATTGTAAAAAATTATAA
1 AAATTCTAAAAAATTATAA
*
70609344 AAATTCTTAAAAATTATAA
1 AAATTCTAAAAAATTATAA
70609363 TTCTTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (19 bp):
AAATTCTAAAAAATTATAA
Found at i:70611903 original size:43 final size:43
Alignment explanation
Indices: 70611799--70611903 Score: 106
Period size: 43 Copynumber: 2.4 Consensus size: 43
70611789 TCACATATCG
* ** *
70611799 ATGCCACTGTCCCAGACAGGGCCTTACACAAAATCATATAACG
1 ATGCCAATGTCCCAGACATCGCCTTACACAAAATCATATAACA
* * * *
70611842 ATGTCAACGCCCCAGACATCGCCTTACACATAATTACA-AT-ACA
1 ATGCCAATGTCCCAGACATCGCCTTACACA-AAAT-CATATAACA
70611885 ATGCCAATGTCCCAGACAT
1 ATGCCAATGTCCCAGACAT
70611904 GGTCCTACAT
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
43 42 0.86
44 5 0.10
45 2 0.04
ACGTcount: A:0.35, C:0.31, G:0.13, T:0.20
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATCGCCTTACACAAAATCATATAACA
Found at i:70613394 original size:26 final size:26
Alignment explanation
Indices: 70613358--70613407 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
70613348 CTATATTTTT
*
70613358 TCTTGCTATTTTATCCATTGTTTGTA
1 TCTTGCTATTTTAGCCATTGTTTGTA
70613384 TCTTGCTATTTTAGCCATTGTTTG
1 TCTTGCTATTTTAGCCATTGTTTG
70613408 ATAGGGAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.56
Consensus pattern (26 bp):
TCTTGCTATTTTAGCCATTGTTTGTA
Found at i:70613568 original size:13 final size:13
Alignment explanation
Indices: 70613550--70613574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
70613540 AGAGTAAAAT
70613550 TTTTGTTGTTTGG
1 TTTTGTTGTTTGG
70613563 TTTTGTTGTTTG
1 TTTTGTTGTTTG
70613575 AGATCTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.00, G:0.28, T:0.72
Consensus pattern (13 bp):
TTTTGTTGTTTGG
Found at i:70625181 original size:17 final size:17
Alignment explanation
Indices: 70625161--70625194 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70625151 AGGTTTAGGT
70625161 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
*
70625178 TTAAAATTTTTAATTAA
1 TTAAAAATTTTAATTAA
70625195 AAATCTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:70626602 original size:20 final size:18
Alignment explanation
Indices: 70626561--70626604 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
70626551 TCATAAAATG
* *
70626561 AAAATTCAATGTAATCCT
1 AAAATTCAAAGTAATCCC
70626579 AAAATTCAAGAGTCAATCCC
1 AAAATTCAA-AGT-AATCCC
70626599 AAAATT
1 AAAATT
70626605 TTACATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 9 0.41
19 2 0.09
20 11 0.50
ACGTcount: A:0.48, C:0.18, G:0.07, T:0.27
Consensus pattern (18 bp):
AAAATTCAAAGTAATCCC
Found at i:70637613 original size:46 final size:44
Alignment explanation
Indices: 70637509--70637623 Score: 158
Period size: 44 Copynumber: 2.6 Consensus size: 44
70637499 TGTCTTTGAC
** * *
70637509 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATAAT
* *
70637553 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATA--TATAAT
70637599 ATGGACTTACATGGCTCATTCCTGT
1 ATGGACTTACATGGCTCATTCCTGT
70637624 TCTGTCCTGT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 33 0.53
46 29 0.47
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (44 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATAAT
Found at i:70637950 original size:4 final size:4
Alignment explanation
Indices: 70637941--70637968 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
70637931 CCTTTTTCTT
70637941 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
70637969 CTTCCTTCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:70638042 original size:9 final size:9
Alignment explanation
Indices: 70638028--70638061 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
70638018 TTCTATTCTG
70638028 TTTCTTTTC
1 TTTCTTTTC
70638037 TTTCTTTT-
1 TTTCTTTTC
*
70638045 TTTCTATTC
1 TTTCTTTTC
70638054 TTTCTTTT
1 TTTCTTTT
70638062 GTTTTATGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTCTTTTC
Found at i:70638054 original size:17 final size:17
Alignment explanation
Indices: 70638028--70638061 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
70638018 TTCTATTCTG
*
70638028 TTTCTTTTCTTTCTTTT
1 TTTCTATTCTTTCTTTT
70638045 TTTCTATTCTTTCTTTT
1 TTTCTATTCTTTCTTTT
70638062 GTTTTATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (17 bp):
TTTCTATTCTTTCTTTT
Found at i:70638083 original size:5 final size:5
Alignment explanation
Indices: 70638070--70638141 Score: 62
Period size: 5 Copynumber: 14.4 Consensus size: 5
70638060 TTGTTTTATG
70638070 TATATA TATAA TATAA TATAA TAT-A T-TAA TGATAA TATAA TATAA -A-AA
1 TATA-A TATAA TATAA TATAA TATAA TATAA T-ATAA TATAA TATAA TATAA
* *
70638118 CATAA TCATTAC TATAA TATAA TA
1 TATAA T-A-TAA TATAA TATAA TA
70638142 ATATTTTTTT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
3 3 0.05
4 6 0.11
5 34 0.61
6 10 0.18
7 3 0.05
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (5 bp):
TATAA
Found at i:70638095 original size:19 final size:19
Alignment explanation
Indices: 70638071--70638113 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
70638061 TGTTTTATGT
70638071 ATATATATAAT-ATAATATA
1 ATATAT-TAATGATAATATA
70638090 ATATATTAATGATAATATA
1 ATATATTAATGATAATATA
70638109 ATATA
1 ATATA
70638114 AAAACATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (19 bp):
ATATATTAATGATAATATA
Found at i:70638123 original size:24 final size:24
Alignment explanation
Indices: 70638077--70638142 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 24
70638067 ATGTATATAT
* * *
70638077 ATAATATAATATAATATATTAATG
1 ATAATATAATATAATAAAATAATC
70638101 ATAATATAATATAA-AAACATAATC
1 ATAATATAATATAATAAA-ATAATC
*
70638125 ATTACTATAATATAATAA
1 A-TAATATAATATAATAA
70638143 TATTTTTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
23 2 0.06
24 19 0.54
25 12 0.34
26 2 0.06
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATATAATATAATAAAATAATC
Found at i:70643529 original size:10 final size:10
Alignment explanation
Indices: 70643513--70643578 Score: 71
Period size: 10 Copynumber: 6.4 Consensus size: 10
70643503 TCCTCCTATC
70643513 CAAATTCTCT
1 CAAATTCTCT
*
70643523 TAAATTCTCT
1 CAAATTCTCT
70643533 CAAATTCT-T
1 CAAATTCTCT
70643542 CCAAAAATTCTCT
1 -C--AAATTCTCT
*
70643555 CATATTCTCT
1 CAAATTCTCT
*
70643565 CAAATTTTCT
1 CAAATTCTCT
70643575 CAAA
1 CAAA
70643579 GCTATCTTTA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
9 1 0.02
10 37 0.79
12 8 0.17
13 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (10 bp):
CAAATTCTCT
Found at i:70643551 original size:32 final size:32
Alignment explanation
Indices: 70643514--70643578 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
70643504 CCTCCTATCC
*
70643514 AAATTCTCTTAAATTCTCTCAAATTCTTC-CAA
1 AAATTCTCTCAAATTCTCTCAAATT-TTCTCAA
*
70643546 AAATTCTCTCATATTCTCTCAAATTTTCTCAA
1 AAATTCTCTCAAATTCTCTCAAATTTTCTCAA
70643578 A
1 A
70643579 GCTATCTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 3 0.10
32 27 0.90
ACGTcount: A:0.34, C:0.25, G:0.00, T:0.42
Consensus pattern (32 bp):
AAATTCTCTCAAATTCTCTCAAATTTTCTCAA
Found at i:70643822 original size:25 final size:25
Alignment explanation
Indices: 70643746--70643822 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 25
70643736 TTTCAATAGT
* *
70643746 ATTTAATATTTTTTTAATTTATGCA
1 ATTTAATATTTTTTTCATTTATACA
*
70643771 ATTTTAAT-TAATTTTTCA---ATACA
1 A-TTTAATAT-TTTTTTCATTTATACA
70643794 ATTTAATATTTTTTTCATTTATACA
1 ATTTAATATTTTTTTCATTTATACA
70643819 ATTT
1 ATTT
70643823 TAATTTTAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
22 13 0.31
23 6 0.14
25 11 0.26
26 12 0.29
ACGTcount: A:0.34, C:0.06, G:0.01, T:0.58
Consensus pattern (25 bp):
ATTTAATATTTTTTTCATTTATACA
Found at i:70643851 original size:50 final size:48
Alignment explanation
Indices: 70643730--70643827 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 48
70643720 AGTGATAATT
* ** *
70643730 TTAATATTTCAATAGTATTTAATATTTTTTTAATTTATGCAATTTTAA
1 TTAATTTTTCAATACAATTTAATATTTTTTTAATTTATACAATTTTAA
*
70643778 TTAATTTTTCAATACAATTTAATATTTTTTTCATTTATACAATTTTAA
1 TTAATTTTTCAATACAATTTAATATTTTTTTAATTTATACAATTTTAA
70643826 TT
1 TT
70643828 TTAATTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.57
Consensus pattern (48 bp):
TTAATTTTTCAATACAATTTAATATTTTTTTAATTTATACAATTTTAA
Found at i:70644785 original size:7 final size:7
Alignment explanation
Indices: 70644773--70644832 Score: 84
Period size: 7 Copynumber: 8.6 Consensus size: 7
70644763 ACTCGTTTCT
70644773 TATTTAG
1 TATTTAG
*
70644780 TATTTAA
1 TATTTAG
70644787 TATTTAG
1 TATTTAG
*
70644794 TATTTGG
1 TATTTAG
70644801 TATTTAG
1 TATTTAG
70644808 TATTTAG
1 TATTTAG
70644815 TATTTAG
1 TATTTAG
* *
70644822 CATCTAG
1 TATTTAG
70644829 TATT
1 TATT
70644833 ATTTATACAA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 45 1.00
ACGTcount: A:0.28, C:0.03, G:0.13, T:0.55
Consensus pattern (7 bp):
TATTTAG
Found at i:70645491 original size:18 final size:18
Alignment explanation
Indices: 70645450--70645484 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
70645440 GCCAGGTGCG
70645450 TATCCTAACCCTTATATA
1 TATCCTAACCCTTATATA
70645468 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
70645485 GTTTCCTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.29, G:0.00, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:70645952 original size:27 final size:27
Alignment explanation
Indices: 70645922--70646019 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
70645912 TAAAAGTTGT
70645922 TTTTAATATTT-TAATTATAATTTACTC
1 TTTT-ATATTTGTAATTATAATTTACTC
* * *
70645949 TTTTATATTTGTAATAAAATAAAAGTT-GT-
1 TTTTATATTTGTAAT----TATAATTTACTC
70645978 TTTTAGTATTT-TAATTATAATTTACTC
1 TTTTA-TATTTGTAATTATAATTTACTC
70646005 TTTTATATTTGTAAT
1 TTTTATATTTGTAAT
70646020 AAAATAAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
25 6 0.11
26 12 0.21
27 17 0.30
29 9 0.16
30 6 0.11
31 6 0.11
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (27 bp):
TTTTATATTTGTAATTATAATTTACTC
Found at i:70645974 original size:56 final size:56
Alignment explanation
Indices: 70645904--70646041 Score: 258
Period size: 56 Copynumber: 2.5 Consensus size: 56
70645894 TTATTTCATT
70645904 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
*
70645960 TAATAAAATAAAAGTTGTTTTTAGTATTTTAATTATAATTTACTCTTTTATATTTG
1 TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
*
70646016 TAATAAAATAAAAGTTGTTTTGAATA
1 TAATAAAATAAAAGTTGTTTTTAATA
70646042 AGGAAATATT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 79 1.00
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (56 bp):
TAATAAAATAAAAGTTGTTTTTAATATTTTAATTATAATTTACTCTTTTATATTTG
Found at i:70649406 original size:125 final size:124
Alignment explanation
Indices: 70649124--70649511 Score: 413
Period size: 125 Copynumber: 3.1 Consensus size: 124
70649114 GGAACTACTG
* * * * *
70649124 TAGAAAAAGAGCGTCCACGTGGGAGCTTTTCTCAGTAATTTTTG-TGAAAGTGCATACTGCATGA
1 TAGAAAAAAAACGTCCACGTGGGAGCTTTT-TCAGTAA-TTTTGCTGACAGTGCATCCTGCTTGA
* * * * * *
70649188 AGCGTTTTTGACATTATTTGTTCAGAAAAGTCATCTCACAATTATTTTTTCAGATACCACTG
64 AGCGTTTTTGACACTATTTCTTCAGAAACGTCTTCTCAAAATTA-TTTTTCAGATACCACTA
** * * * * * *
70649250 TATCAAAAGAGCGTCTACGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGTATCCTGCTTAAA
1 TAGAAAAAAAACGTCCACGTGGGAGC-TTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAA
*** *
70649315 ATATTTTTTACACTACTTT-TTCAGAAACGTCTTCTCAAAATTATTTTTCAGATACCACTA
65 GCGTTTTTGACACTA-TTTCTTCAGAAACGTCTTCTCAAAATTATTTTTCAGATACCACTA
70649375 TAGAAAAAAAACGTCCACGTGGGAGCATTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAA
1 TAGAAAAAAAACGTCCACGTGGGAGC-TTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAA
* * * * * * *
70649440 GCGTTTTGGATACTATTTCTTCAGAAACTTCTTCTTAAAATTTTTTTTCCAAATACTACTGA
65 GCGTTTTTGACACTATTTCTTCAGAAACGTCTTCTCAAAATTATTTTT-CAGATACCACT-A
70649502 -AGAAAAAAAA
1 TAGAAAAAAAA
70649512 ACCAAAAATT
Statistics
Matches: 218, Mismatches: 38, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
124 3 0.01
125 112 0.51
126 95 0.44
127 8 0.04
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (124 bp):
TAGAAAAAAAACGTCCACGTGGGAGCTTTTTCAGTAATTTTGCTGACAGTGCATCCTGCTTGAAG
CGTTTTTGACACTATTTCTTCAGAAACGTCTTCTCAAAATTATTTTTCAGATACCACTA
Found at i:70649722 original size:6 final size:6
Alignment explanation
Indices: 70649711--70649765 Score: 64
Period size: 6 Copynumber: 9.8 Consensus size: 6
70649701 CTTAAAAAAA
* *
70649711 CCTAAC CCTAAC CTTAAC CTTAAC CC--AC CCTAAC CC--AC CCTAAC
1 CCTAAC CCTAAC CCTAAC CCTAAC CCTAAC CCTAAC CCTAAC CCTAAC
70649755 CCTAAC CCTAA
1 CCTAAC CCTAA
70649766 AAAACCCTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
4 8 0.19
6 35 0.81
ACGTcount: A:0.33, C:0.49, G:0.00, T:0.18
Consensus pattern (6 bp):
CCTAAC
Found at i:70649746 original size:10 final size:10
Alignment explanation
Indices: 70649731--70649756 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
70649721 ACCTTAACCT
70649731 TAACCCACCC
1 TAACCCACCC
70649741 TAACCCACCC
1 TAACCCACCC
70649751 TAACCC
1 TAACCC
70649757 TAACCCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.58, G:0.00, T:0.12
Consensus pattern (10 bp):
TAACCCACCC
Found at i:70663463 original size:22 final size:21
Alignment explanation
Indices: 70663438--70663496 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 21
70663428 AAACCCTAAT
*
70663438 TTCTCCTTTTTCTTTTCTTTTC
1 TTCT-CTTTTTCTTTTCGTTTC
70663460 TTCT-TTCTTTCTATTTCGTTTC
1 TTCTCTT-TTTCT-TTTCGTTTC
*
70663482 TTCTCTGTTTCTTTT
1 TTCTCTTTTTCTTTT
70663497 TCTTGTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
20 2 0.06
21 8 0.25
22 21 0.66
23 1 0.03
ACGTcount: A:0.02, C:0.24, G:0.03, T:0.71
Consensus pattern (21 bp):
TTCTCTTTTTCTTTTCGTTTC
Found at i:70663499 original size:14 final size:15
Alignment explanation
Indices: 70663460--70663504 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
70663450 TTTTCTTTTC
*
70663460 TTCTTTCTT-TCTAT
1 TTCTTTCTTCTCTGT
70663474 TTCGTTTCTTCTCTGT
1 TTC-TTTCTTCTCTGT
70663490 TTCTTT-TTCT-TGT
1 TTCTTTCTTCTCTGT
70663503 TT
1 TT
70663505 TTCTTTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.18
14 7 0.25
15 9 0.32
16 7 0.25
ACGTcount: A:0.02, C:0.20, G:0.07, T:0.71
Consensus pattern (15 bp):
TTCTTTCTTCTCTGT
Found at i:70663684 original size:3 final size:3
Alignment explanation
Indices: 70663676--70663707 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
70663666 CAATTAATTG
70663676 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
70663708 GAGTAAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:70663971 original size:20 final size:22
Alignment explanation
Indices: 70663917--70663962 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
70663907 ACTTCTAATT
70663917 AAAAATAAATTCACGTAATTAA
1 AAAAATAAATTCACGTAATTAA
70663939 AAAAATAAATTCACGTAATTAA
1 AAAAATAAATTCACGTAATTAA
70663961 AA
1 AA
70663963 TCTAATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.61, C:0.09, G:0.04, T:0.26
Consensus pattern (22 bp):
AAAAATAAATTCACGTAATTAA
Found at i:70668587 original size:18 final size:18
Alignment explanation
Indices: 70668564--70668599 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
70668554 ATGAAGCGGT
70668564 AAAATGGTTCTTTCTTTA
1 AAAATGGTTCTTTCTTTA
70668582 AAAATGGTTCTTTCTTTA
1 AAAATGGTTCTTTCTTTA
70668600 CAATTGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (18 bp):
AAAATGGTTCTTTCTTTA
Found at i:70668656 original size:40 final size:40
Alignment explanation
Indices: 70668612--70668691 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
70668602 ATTGTGTTTA
70668612 CTCTTTTATTAGGAGCTCTTATCCTTTCATTGTTATTCTG
1 CTCTTTTATTAGGAGCTCTTATCCTTTCATTGTTATTCTG
70668652 CTCTTTTATTAGGAGCTCTTATCCTTTCATTGTTATTCTG
1 CTCTTTTATTAGGAGCTCTTATCCTTTCATTGTTATTCTG
70668692 TGTTGTGTGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.15, C:0.20, G:0.12, T:0.53
Consensus pattern (40 bp):
CTCTTTTATTAGGAGCTCTTATCCTTTCATTGTTATTCTG
Found at i:70669387 original size:11 final size:11
Alignment explanation
Indices: 70669371--70669405 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
70669361 TCGATTGAAT
70669371 AAATTATTAAA
1 AAATTATTAAA
*
70669382 AAATTACTAAA
1 AAATTATTAAA
70669393 AAATTATTAAA
1 AAATTATTAAA
70669404 AA
1 AA
70669406 TCTGGTTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (11 bp):
AAATTATTAAA
Found at i:70675092 original size:22 final size:22
Alignment explanation
Indices: 70675064--70675109 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
70675054 AAATATATCG
70675064 AAATTCGTAGTGTTTTAAGTTT
1 AAATTCGTAGTGTTTTAAGTTT
70675086 AAATTCGTAGTGTTTTAAGTTT
1 AAATTCGTAGTGTTTTAAGTTT
70675108 AA
1 AA
70675110 CTACTTTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.17, T:0.48
Consensus pattern (22 bp):
AAATTCGTAGTGTTTTAAGTTT
Found at i:70675373 original size:34 final size:37
Alignment explanation
Indices: 70675312--70675385 Score: 93
Period size: 34 Copynumber: 2.1 Consensus size: 37
70675302 TAAAATATAG
*
70675312 ATATGTGTTTTAAAATAATATACAATAA-ATAATAAAAT
1 ATATGTGTTTGAAAATAATATA-AATAATA-AATAAAAT
70675350 ATATG-GTTTGAAAATAAT-T-AATAATAAATAAAAT
1 ATATGTGTTTGAAAATAATATAAATAATAAATAAAAT
70675384 AT
1 AT
70675386 GTAAGATATT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
34 15 0.44
35 1 0.03
36 1 0.03
37 12 0.35
38 5 0.15
ACGTcount: A:0.55, C:0.01, G:0.07, T:0.36
Consensus pattern (37 bp):
ATATGTGTTTGAAAATAATATAAATAATAAATAAAAT
Found at i:70682298 original size:16 final size:18
Alignment explanation
Indices: 70682270--70682303 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
70682260 TGACATATAT
70682270 TTTTATATA-TTTTAAAA
1 TTTTATATATTTTTAAAA
70682287 TTTTAT-TATTTTTAAAA
1 TTTTATATATTTTTAAAA
70682304 ATTAAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTATATATTTTTAAAA
Found at i:70689159 original size:32 final size:32
Alignment explanation
Indices: 70689118--70689183 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
70689108 CTTAACAAAC
70689118 ATATTTTCCAAATGCATGATTTCAATATCTAT
1 ATATTTTCCAAATGCATGATTTCAATATCTAT
70689150 ATATTTTCCAAATGCATGATTTCAATATCTAT
1 ATATTTTCCAAATGCATGATTTCAATATCTAT
70689182 AT
1 AT
70689184 GCATGTGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.35, C:0.15, G:0.06, T:0.44
Consensus pattern (32 bp):
ATATTTTCCAAATGCATGATTTCAATATCTAT
Found at i:70691270 original size:23 final size:25
Alignment explanation
Indices: 70691244--70691303 Score: 63
Period size: 28 Copynumber: 2.4 Consensus size: 25
70691234 TGTATTCGAG
*
70691244 TTTAGTATTTTT-T-TAATGTAGTA
1 TTTAGTATTTTTGTCTAATATAGTA
70691267 TTTATGTTATTTTTTGTCTAATATAGTA
1 TTTA-G-TA-TTTTTGTCTAATATAGTA
70691295 TTT-GTATTT
1 TTTAGTATTT
70691304 GATAAAAGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
23 4 0.13
24 4 0.13
25 4 0.13
26 6 0.19
27 1 0.03
28 12 0.39
ACGTcount: A:0.23, C:0.02, G:0.12, T:0.63
Consensus pattern (25 bp):
TTTAGTATTTTTGTCTAATATAGTA
Found at i:70691925 original size:14 final size:15
Alignment explanation
Indices: 70691906--70691934 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
70691896 TTTTTATTTA
70691906 AAAATAATA-ATTCT
1 AAAATAATATATTCT
70691920 AAAATAATATATTCT
1 AAAATAATATATTCT
70691935 TATAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (15 bp):
AAAATAATATATTCT
Found at i:70699151 original size:6 final size:6
Alignment explanation
Indices: 70699140--70699173 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
70699130 GGATTGCAAG
*
70699140 TTTTCA TTTTCA TTTTCA TTTTCA TTTCCA TTTT
1 TTTTCA TTTTCA TTTTCA TTTTCA TTTTCA TTTT
70699174 TGGAAACCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.68
Consensus pattern (6 bp):
TTTTCA
Found at i:70700446 original size:24 final size:24
Alignment explanation
Indices: 70700419--70700483 Score: 67
Period size: 25 Copynumber: 2.7 Consensus size: 24
70700409 TGAAAGAGCG
*
70700419 TCCCGTTATTAGCTCTCATAAGCT
1 TCCCGTTATTAGCTCTCACAAGCT
* * * *
70700443 TCCCGTTATATGGTTCTTACGAGCT
1 TCCCGTTAT-TAGCTCTCACAAGCT
*
70700468 TCCCGTTAATAGCTCT
1 TCCCGTTATTAGCTCT
70700484 TCGGAGCATC
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
24 14 0.44
25 18 0.56
ACGTcount: A:0.18, C:0.28, G:0.15, T:0.38
Consensus pattern (24 bp):
TCCCGTTATTAGCTCTCACAAGCT
Found at i:70700490 original size:24 final size:25
Alignment explanation
Indices: 70700414--70700484 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 25
70700404 CAGCTTGAAA
* * *
70700414 GAGCGTCCCGTTAT-TAGCTCTCAT
1 GAGCTTCCCGTTATATAGCTCTTAC
* * *
70700438 AAGCTTCCCGTTATATGGTTCTTAC
1 GAGCTTCCCGTTATATAGCTCTTAC
70700463 GAGCTTCCCGTTA-ATAGCTCTT
1 GAGCTTCCCGTTATATAGCTCTT
70700485 CGGAGCATCC
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
24 19 0.51
25 18 0.49
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.37
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGCTCTTAC
Found at i:70700587 original size:25 final size:26
Alignment explanation
Indices: 70700542--70700608 Score: 66
Period size: 25 Copynumber: 2.6 Consensus size: 26
70700532 ACAACTCTTA
* *
70700542 TGAGCGTCCCGA-TATATGGCTCTAAG
1 TGAGCTTCCCGATTA-AAGGCTCTAAG
**
70700568 -GAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTAAG
*
70700593 TGAGCTTCCTGATTAA
1 TGAGCTTCCCGATTAA
70700609 TTGGCTCTGT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 18 0.53
26 16 0.47
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTAAG
Found at i:70701349 original size:46 final size:47
Alignment explanation
Indices: 70701289--70701516 Score: 313
Period size: 46 Copynumber: 5.0 Consensus size: 47
70701279 TTTGACGTGA
* * * * * *
70701289 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
** * *
70701335 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
70701381 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TCTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
*
70701427 TGCCATGGTATCTTTCAACTATGGTCTTACACA-TTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
70701473 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAG
70701517 AGAGCACACT
Statistics
Matches: 167, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
45 5 0.03
46 162 0.97
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.40
Consensus pattern (47 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTCATATCAGGT
Found at i:70710016 original size:25 final size:24
Alignment explanation
Indices: 70709954--70710033 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 24
70709944 TTCTCGATAT
70709954 TGGCTCAT-ATGAGCTTCCTATTAA
1 TGGCTC-TCATGAGCTTCCTATTAA
* * *
70709978 TGGCTCTTAGGAGCTTCCTGTTACA
1 TGGCTCTCATGAGCTTCCTATTA-A
*
70710003 TGGCT-TACATGAGCTTCCCATTATA
1 TGGCTCT-CATGAGCTTCCTATTA-A
70710028 TGGCTC
1 TGGCTC
70710034 GAAAGAGCTT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
23 1 0.02
24 20 0.44
25 24 0.53
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (24 bp):
TGGCTCTCATGAGCTTCCTATTAA
Found at i:70710065 original size:50 final size:49
Alignment explanation
Indices: 70709954--70710073 Score: 134
Period size: 50 Copynumber: 2.4 Consensus size: 49
70709944 TTCTCGATAT
* ** *
70709954 TGGCTCATATGAGCTTCCTATTAATGGCTCTTAGGAGCTTCCTGTTACA
1 TGGCTCATATGAGCTTCCCATTAATGGCTCGAAAGAGCTTCCTGTTACA
* * * *
70710003 TGGCTTACATGAGCTTCCCATTATATGGCTCGAAAGAGCTTCTTGTT-TA
1 TGGCTCATATGAGCTTCCCATTA-ATGGCTCGAAAGAGCTTCCTGTTACA
70710052 TGTGCTCATATGAGCATTCCCA
1 TG-GCTCATATGAGC-TTCCCA
70710074 AATATGAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 4
0.81 0.14 0.06
Matches are distributed among these distances:
49 23 0.40
50 29 0.50
51 6 0.10
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (49 bp):
TGGCTCATATGAGCTTCCCATTAATGGCTCGAAAGAGCTTCCTGTTACA
Found at i:70715186 original size:17 final size:17
Alignment explanation
Indices: 70715164--70715200 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
70715154 GTTACAGCTA
70715164 GAAAGGATATCAGAATG
1 GAAAGGATATCAGAATG
70715181 GAAAGGATATCAGAATG
1 GAAAGGATATCAGAATG
70715198 GAA
1 GAA
70715201 GTGGGATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.05, G:0.30, T:0.16
Consensus pattern (17 bp):
GAAAGGATATCAGAATG
Found at i:70716395 original size:8 final size:8
Alignment explanation
Indices: 70716382--70716410 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
70716372 TTATGTTTAG
70716382 TATATTAT
1 TATATTAT
70716390 TATATTAT
1 TATATTAT
70716398 TATATTAT
1 TATATTAT
70716406 TATAT
1 TATAT
70716411 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:70716443 original size:5 final size:5
Alignment explanation
Indices: 70716433--70716463 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
70716423 TTATGTTTTA
70716433 ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
70716464 AAACTAAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATTAT
Found at i:70717736 original size:101 final size:103
Alignment explanation
Indices: 70717561--70717762 Score: 338
Period size: 101 Copynumber: 2.0 Consensus size: 103
70717551 GCTCCCAAAA
*
70717561 TTTTTGAAAAAGTTTCATTTCTCTCTTAAAGTTTTTTTAAAAAATTTAATTACACCCATCAAGTT
1 TTTTTGAAAAAGTTTCACTTCTCTCTTAAAGTTTTTTTAAAAAATTTAATTACACCCATCAAGTT
70717626 TTATAAATTTTCATTATACCTTTTAATTTGTTTTAAAT
66 TTATAAATTTTCATTATACCTTTTAATTTGTTTTAAAT
* * *
70717664 TTTTTGAAAAAGTTTCACTTCTC-CTTAAAG-TTTTTTAAAAAATTTAGTTAGACCCTTCAAGTT
1 TTTTTGAAAAAGTTTCACTTCTCTCTTAAAGTTTTTTTAAAAAATTTAATTACACCCATCAAGTT
70717727 TT-TAAAATTTTCATTATACCTTTTAATTTGTTTTAA
66 TTAT-AAATTTTCATTATACCTTTTAATTTGTTTTAA
70717763 TAATTTTAAT
Statistics
Matches: 94, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
100 1 0.01
101 64 0.68
102 7 0.07
103 22 0.23
ACGTcount: A:0.32, C:0.12, G:0.06, T:0.50
Consensus pattern (103 bp):
TTTTTGAAAAAGTTTCACTTCTCTCTTAAAGTTTTTTTAAAAAATTTAATTACACCCATCAAGTT
TTATAAATTTTCATTATACCTTTTAATTTGTTTTAAAT
Found at i:70722548 original size:18 final size:18
Alignment explanation
Indices: 70722522--70722556 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
70722512 GAATTATTCG
*
70722522 AATCGAGTTAATCGAATT
1 AATCAAGTTAATCGAATT
70722540 AATCAAGTTAATCGAAT
1 AATCAAGTTAATCGAAT
70722557 CAGCTCGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (18 bp):
AATCAAGTTAATCGAATT
Found at i:70722942 original size:12 final size:12
Alignment explanation
Indices: 70722925--70722957 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
70722915 TATTTTTTAG
70722925 TTATTTACTCAC
1 TTATTTACTCAC
*
70722937 TTATTTATTCAC
1 TTATTTACTCAC
70722949 TTATTTACT
1 TTATTTACT
70722958 TCAATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.24, C:0.18, G:0.00, T:0.58
Consensus pattern (12 bp):
TTATTTACTCAC
Found at i:70724252 original size:30 final size:29
Alignment explanation
Indices: 70724218--70724276 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
70724208 AAAATTTTAA
* *
70724218 AAATATTTTTTATAATTATTATACTTTTTT
1 AAATAATTTTAATAATTATTA-ACTTTTTT
* *
70724248 AAATAATTTTAATGATTTTTAACTTTTTT
1 AAATAATTTTAATAATTATTAACTTTTTT
70724277 TGAATTTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 8 0.32
30 17 0.68
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (29 bp):
AAATAATTTTAATAATTATTAACTTTTTT
Found at i:70724759 original size:15 final size:15
Alignment explanation
Indices: 70724739--70724769 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
70724729 ATTTCAAAGG
70724739 ACCAAAAACAAACCA
1 ACCAAAAACAAACCA
*
70724754 ACCAAAACCAAACCA
1 ACCAAAAACAAACCA
70724769 A
1 A
70724770 ACACAACATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00
Consensus pattern (15 bp):
ACCAAAAACAAACCA
Found at i:70732512 original size:19 final size:20
Alignment explanation
Indices: 70732475--70732513 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
70732465 TTTTAATAAC
* *
70732475 ATTTTTATTTGGAATTTTAA
1 ATTTTTATTTGAAAATTTAA
70732495 ATTTTT-TTTGAAAATTTAA
1 ATTTTTATTTGAAAATTTAA
70732514 GATTATTATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (20 bp):
ATTTTTATTTGAAAATTTAA
Found at i:70732632 original size:13 final size:13
Alignment explanation
Indices: 70732616--70732646 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
70732606 AACATAATCC
70732616 AAAAACAAAAAAA
1 AAAAACAAAAAAA
*
70732629 AAAAACAAAAACA
1 AAAAACAAAAAAA
70732642 AAAAA
1 AAAAA
70732647 TGACATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAACAAAAAAA
Found at i:70733152 original size:14 final size:14
Alignment explanation
Indices: 70733130--70733177 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
70733120 TTCGTTATAG
*
70733130 TTTTT-TTTTTGTT
1 TTTTTATTTTTATT
70733143 TTTTTATTTTTATT
1 TTTTTATTTTTATT
*
70733157 TTTTCATTTTTATAT
1 TTTTTATTTTTAT-T
70733172 TTTTTA
1 TTTTTA
70733178 ACATTTTTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 5 0.17
14 19 0.63
15 6 0.20
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.83
Consensus pattern (14 bp):
TTTTTATTTTTATT
Found at i:70740784 original size:30 final size:29
Alignment explanation
Indices: 70740734--70740793 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 29
70740724 CATGGTCTGA
*
70740734 CACATGGTCGTATGCCAGCCCATGTGGCT
1 CACATAGTCGTATGCCAGCCCATGTGGCT
*
70740763 CACATAGTCGTGTGTCCAGCCCATGTGGCT
1 CACATAGTCGTATG-CCAGCCCATGTGGCT
70740793 C
1 C
70740794 CTGAAACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.17, C:0.32, G:0.27, T:0.25
Consensus pattern (29 bp):
CACATAGTCGTATGCCAGCCCATGTGGCT
Found at i:70742227 original size:27 final size:27
Alignment explanation
Indices: 70742197--70742249 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
70742187 AAATAAAAAG
*
70742197 GGGGTTGCTATGTGCTGATTCCCCGAA
1 GGGGTTGCTAAGTGCTGATTCCCCGAA
70742224 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
70742250 TTAAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.15, C:0.23, G:0.34, T:0.28
Consensus pattern (27 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAA
Found at i:70742259 original size:103 final size:105
Alignment explanation
Indices: 70742015--70742280 Score: 421
Period size: 103 Copynumber: 2.6 Consensus size: 105
70742005 GTTGTACATA
** *
70742015 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
70742080 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
70742120 -AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
70742184 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* * *
70742222 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
70742281 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
102 5 0.03
103 78 0.52
104 66 0.44
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (105 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:70744219 original size:11 final size:10
Alignment explanation
Indices: 70744170--70744220 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 10
70744160 AGGTTAATGT
70744170 TAATTAATTA
1 TAATTAATTA
*
70744180 TTGATTAATTA
1 -TAATTAATTA
*
70744191 -AACTAATTA
1 TAATTAATTA
*
70744200 TGATTAATTA
1 TAATTAATTA
70744210 TAAGTTAATTA
1 TAA-TTAATTA
70744221 AAGGCATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
9 7 0.22
10 9 0.28
11 16 0.50
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (10 bp):
TAATTAATTA
Found at i:70745430 original size:43 final size:42
Alignment explanation
Indices: 70745368--70745481 Score: 142
Period size: 43 Copynumber: 2.7 Consensus size: 42
70745358 CGCTATAGCT
* * *
70745368 AACGCCGCTAAAGAGCATGACTTTTAGCGGCACTTCTTT-T-ACA
1 AACGCCTCTAAAGACCATGACCTTTAGCGGCA-TT-TTTCTCA-A
70745411 AACGCCTCTAAAGACCATGACCTTTAGCGGCATTTTTCTCGAA
1 AACGCCTCTAAAGACCATGACCTTTAGCGGCATTTTTCTC-AA
*
70745454 AACGCCTCTAAAGATCATGACCTTTAGC
1 AACGCCTCTAAAGACCATGACCTTTAGC
70745482 AACGCTGTTC
Statistics
Matches: 64, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
41 3 0.05
42 3 0.05
43 57 0.89
44 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
AACGCCTCTAAAGACCATGACCTTTAGCGGCATTTTTCTCAA
Found at i:70745493 original size:43 final size:43
Alignment explanation
Indices: 70745368--70745522 Score: 134
Period size: 43 Copynumber: 3.6 Consensus size: 43
70745358 CGCTATAGCT
* * * ** * *
70745368 AACGCCGCTAAAGAGCATGACTTTTAGCGGCACT-TCTTTTACA
1 AACGCCTCTAAAGATCATGACCTTTAGCAACACTGT-TCTCACA
* ** * *
70745411 AACGCCTCTAAAGACCATGACCTTTAGCGGCATTTTTCTCGA-A
1 AACGCCTCTAAAGATCATGACCTTTAGCAACACTGTTCTC-ACA
*
70745454 AACGCCTCTAAAGATCATGACCTTTAGCAACGCTGTTCTCACA
1 AACGCCTCTAAAGATCATGACCTTTAGCAACACTGTTCTCACA
* * *
70745497 AACGCCGCTAAAAATCATGAACTTTA
1 AACGCCTCTAAAGATCATGACCTTTA
70745523 AAAAAATTAT
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.01
43 91 0.97
44 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.26
Consensus pattern (43 bp):
AACGCCTCTAAAGATCATGACCTTTAGCAACACTGTTCTCACA
Found at i:70745571 original size:22 final size:23
Alignment explanation
Indices: 70745543--70745585 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
70745533 TTTATTTTAA
*
70745543 TTAAATAATAT-TTATTTTTATG
1 TTAAATAATATATTATGTTTATG
*
70745565 TTAAATATTATATTATGTTTA
1 TTAAATAATATATTATGTTTA
70745586 ATTTTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (23 bp):
TTAAATAATATATTATGTTTATG
Found at i:70750604 original size:53 final size:52
Alignment explanation
Indices: 70750492--70750594 Score: 152
Period size: 53 Copynumber: 1.9 Consensus size: 52
70750482 GAAAAAAAGA
**
70750492 GATTTTGGGATTTCGGGGGAAGGGGGAACCGATTTAGGGAAAAAGTGGGAACC
1 GATTTTGGGATTTCGGGGGAAGGGGGAACCGATTTAGGGAAAAAACGGG-ACC
*
70750545 GATTTTGGGATTTCGGGGGAAGGGGGAACCGATTTTGGGTAATAAAACGG
1 GATTTTGGGATTTCGGGGGAAGGGGGAACCGATTTAGGG-AA-AAAACGG
70750595 CGCCGTTTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
53 38 0.84
54 2 0.04
55 5 0.11
ACGTcount: A:0.27, C:0.09, G:0.41, T:0.23
Consensus pattern (52 bp):
GATTTTGGGATTTCGGGGGAAGGGGGAACCGATTTAGGGAAAAAACGGGACC
Found at i:70751033 original size:13 final size:13
Alignment explanation
Indices: 70751012--70751062 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
70751002 TTTCCAACAT
70751012 TAAACCCTAAACC
1 TAAACCCTAAACC
*
70751025 TAAATCCTAAA-C
1 TAAACCCTAAACC
* *
70751037 TATAAACCTATATCC
1 TA-AACCCTA-AACC
70751052 TAAACCCTAAA
1 TAAACCCTAAA
70751063 TATATATATT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
12 3 0.10
13 17 0.57
14 7 0.23
15 3 0.10
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAACCCTAAACC
Found at i:70751069 original size:20 final size:20
Alignment explanation
Indices: 70751012--70751062 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
70751002 TTTCCAACAT
*
70751012 TAAACCCTAAACCTAAATCC
1 TAAACCCTAAACCTATATCC
**
70751032 TAAACTATAAACCTATATCC
1 TAAACCCTAAACCTATATCC
70751052 TAAACCCTAAA
1 TAAACCCTAAA
70751063 TATATATATT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.47, C:0.29, G:0.00, T:0.24
Consensus pattern (20 bp):
TAAACCCTAAACCTATATCC
Found at i:70751247 original size:14 final size:14
Alignment explanation
Indices: 70751230--70751268 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
70751220 GTAAAACAAA
*
70751230 AAACCGCAAACTCT
1 AAACCACAAACTCT
*
70751244 AAACCATAAACTCT
1 AAACCACAAACTCT
*
70751258 AAACCAAAAAC
1 AAACCACAAAC
70751269 AATAAACATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.54, C:0.31, G:0.03, T:0.13
Consensus pattern (14 bp):
AAACCACAAACTCT
Found at i:70752026 original size:42 final size:41
Alignment explanation
Indices: 70751968--70752117 Score: 237
Period size: 41 Copynumber: 3.6 Consensus size: 41
70751958 TATTTTTTTT
* * *
70751968 GCGGCGTTTTTCCAAAAGCGCCGCTAAAATCACGATCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
*
70752009 GCGGCGTTTTTTCCAAAAGCGCCGCTAAAACCTCAACCTATA
1 GCGGCG-TTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
*
70752051 GCGGCGTTTTTCCAAAAGCACCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
*
70752092 GCAGCGTTTTTCCAAAAGCGCCGCTA
1 GCGGCGTTTTTCCAAAAGCGCCGCTA
70752118 TTGTTCAGTT
Statistics
Matches: 100, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
41 63 0.63
42 37 0.37
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (41 bp):
GCGGCGTTTTTCCAAAAGCGCCGCTAAAACCTCGACCTATA
Found at i:70752212 original size:41 final size:41
Alignment explanation
Indices: 70752103--70752221 Score: 159
Period size: 40 Copynumber: 2.9 Consensus size: 41
70752093 CAGCGTTTTT
* * *
70752103 CCAAAAGCGCCGCTATTGTTCAGTTTTTAGCGGTGTTTGGA
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
*
70752144 CCAAAAACGCCGCTATTACTCAGTTTTTAG-GGCGTTTGGA
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
* * * *
70752184 TCAAAAACGCCGCTCTTGCTCAGTTTTTTGCAGCGTTT
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTT
70752222 TATTGCAAAC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
40 35 0.51
41 33 0.49
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (41 bp):
CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
Found at i:70753189 original size:17 final size:17
Alignment explanation
Indices: 70753167--70753204 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
70753157 CTAATTTGAG
70753167 TCTTGATTAATGCTTAA
1 TCTTGATTAATGCTTAA
70753184 TCTTGATTAATGCTTAA
1 TCTTGATTAATGCTTAA
70753201 TCTT
1 TCTT
70753205 AGTTTGGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.13, G:0.11, T:0.50
Consensus pattern (17 bp):
TCTTGATTAATGCTTAA
Found at i:70753693 original size:19 final size:20
Alignment explanation
Indices: 70753669--70753712 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
70753659 TGCTAAAATG
70753669 GTATCGATACCA-AAA-GAAA
1 GTATCGATA-CATAAAGGAAA
*
70753688 GTATCGGTACATAAAGGAAA
1 GTATCGATACATAAAGGAAA
70753708 GTATC
1 GTATC
70753713 AGTACTTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 2 0.09
19 11 0.50
20 9 0.41
ACGTcount: A:0.45, C:0.14, G:0.20, T:0.20
Consensus pattern (20 bp):
GTATCGATACATAAAGGAAA
Found at i:70762721 original size:22 final size:22
Alignment explanation
Indices: 70762696--70762739 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
70762686 ATTATATTAA
*
70762696 TTATATATATTAAATAATAATT
1 TTATATATATCAAATAATAATT
* *
70762718 TTATATTTATCCAATAATAATT
1 TTATATATATCAAATAATAATT
70762740 AAATTCATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
TTATATATATCAAATAATAATT
Found at i:70762908 original size:39 final size:38
Alignment explanation
Indices: 70762817--70762907 Score: 101
Period size: 39 Copynumber: 2.3 Consensus size: 38
70762807 AAAAATTATA
* * *
70762817 TTTAATACAATACAATATTTATTGTATTTATTTGTATTT
1 TTTAATATAATA-AATATTTATTATATTTATTAGTATTT
*
70762856 TTTAATATAATAAAATATTTATTATATTTATGGTAGTGTTTT
1 TTTAATATAAT-AAATATTTATTATATTTAT--TAGT-ATTT
70762898 TTTAATATAA
1 TTTAATATAA
70762908 ATATTTTTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
39 27 0.61
40 1 0.02
41 3 0.07
42 13 0.30
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.55
Consensus pattern (38 bp):
TTTAATATAATAAATATTTATTATATTTATTAGTATTT
Found at i:70763206 original size:19 final size:19
Alignment explanation
Indices: 70763170--70763208 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
70763160 TAAAATGCCT
*
70763170 TTTTCTATATTTTTAATTA
1 TTTTCTATATTTTAAATTA
70763189 TTTTC-ATATTTTAAAATTA
1 TTTTCTATATTTT-AAATTA
70763208 T
1 T
70763209 AATTTCTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTCTATATTTTAAATTA
Found at i:70764335 original size:25 final size:25
Alignment explanation
Indices: 70764307--70764359 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
70764297 TACACTTAAA
70764307 TTATTTTCATAATTAATCAATTCAT
1 TTATTTTCATAATTAATCAATTCAT
70764332 TTATTTTCATAATTAATCAATTCAT
1 TTATTTTCATAATTAATCAATTCAT
70764357 TTA
1 TTA
70764360 AATCATTTCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (25 bp):
TTATTTTCATAATTAATCAATTCAT
Found at i:70766072 original size:23 final size:20
Alignment explanation
Indices: 70766020--70766062 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
70766010 TTGCGTGAGG
70766020 TTTTGATGGAGAAAACAACA
1 TTTTGATGGAGAAAACAACA
70766040 TTTTGATGGAGAAAACAACA
1 TTTTGATGGAGAAAACAACA
70766060 TTT
1 TTT
70766063 ACCTTATGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (20 bp):
TTTTGATGGAGAAAACAACA
Found at i:70769650 original size:26 final size:26
Alignment explanation
Indices: 70769621--70769702 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
70769611 TGGTACAAAT
* *
70769621 TGATAATGGGTTAGTTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
70769647 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
70769673 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
70769699 TGAT
1 TGAT
70769703 GGGCATTTCA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.33, C:0.07, G:0.22, T:0.38
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:70773142 original size:61 final size:58
Alignment explanation
Indices: 70773018--70773185 Score: 164
Period size: 61 Copynumber: 2.9 Consensus size: 58
70773008 CTTAATATTA
* * * * * *
70773018 AATTAATATAATACTTATTAAGATAAATATTAGATTAATTTTAATATTAAATCTATTC
1 AATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTTAAAATTAAATATAATC
70773076 AATTAATAGAATACTTATCTACAAGATAAATATTAAATTAAATTTAAAATT-AATATAATC
1 AATTAATAGAATACTTAT-T--AAGATAAATATTAAATTAAATTTAAAATTAAATATAATC
* * * * *
70773136 ACATTAATATTAA-A-TTAATAAAAT-ACTATTAAATTAAATTTAATATTAAA
1 A-ATTAATA-GAATACTTATTAAGATAAATATTAAATTAAATTTAAAATTAAA
70773186 ACTTTTAAAA
Statistics
Matches: 93, Mismatches: 11, Indels: 13
0.79 0.09 0.11
Matches are distributed among these distances:
56 21 0.23
57 6 0.06
58 17 0.18
59 2 0.02
60 11 0.12
61 34 0.37
62 2 0.02
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (58 bp):
AATTAATAGAATACTTATTAAGATAAATATTAAATTAAATTTAAAATTAAATATAATC
Found at i:70773166 original size:25 final size:24
Alignment explanation
Indices: 70773112--70773180 Score: 77
Period size: 25 Copynumber: 2.7 Consensus size: 24
70773102 TAAATATTAA
*
70773112 ATTAAATTTAAAATTAATATAATCAC
1 ATTAAA-TT-AAATTAATAAAATCAC
70773138 ATTAATATTAAATTAATAAAAT-AC
1 ATTAA-ATTAAATTAATAAAATCAC
70773162 TATTAAATTAAATTTAATA
1 -ATTAAATTAAA-TTAATA
70773181 TTAAAACTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
24 8 0.21
25 23 0.59
26 7 0.18
27 1 0.03
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (24 bp):
ATTAAATTAAATTAATAAAATCAC
Found at i:70774293 original size:139 final size:139
Alignment explanation
Indices: 70774043--70774317 Score: 383
Period size: 139 Copynumber: 2.0 Consensus size: 139
70774033 ATGATATCCT
* *
70774043 TGATACATTTGAGTTAAATTCGTTCACTCAATATAGTCCTATTTTATCTCATCGTCACCATTATG
1 TGATACATTTGAGTTAAATTCGTTCACTCAATACAATCCTATTTTATCTCATCGTCACCATTATG
* *
70774108 TCTTCTTAATGATTAATATGCTTACTGTCAACAAATAACTATGATAAATTT-CTCGTTCGAGAAC
66 TCTTCTTAATGATTAATATGATCACTGTCAACAAATAACTATGAT-AATTTGCTCGTTCGAGAAC
70774172 AAGCAACCCG
130 AAGCAACCCG
* * * * *
70774182 TGATACATTTGAGTTAAATTTGTTCGCTTAATACAATCCTATTTTA-CTTCATTGTCACCATTGT
1 TGATACATTTGAGTTAAATTCGTTCACTCAATACAATCCTATTTTATC-TCATCGTCACCATTAT
* * * * * *
70774246 GTCTTCTTAATTATTAATATGATCATTGTCAATAAATTACTGTGATAATTTGCTCGTTTGAGAAC
65 GTCTTCTTAATGATTAATATGATCACTGTCAACAAATAACTATGATAATTTGCTCGTTCGAGAAC
70774311 AAGCAAC
130 AAGCAAC
70774318 TCGAGGTCAC
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
138 6 0.05
139 113 0.95
ACGTcount: A:0.31, C:0.18, G:0.12, T:0.39
Consensus pattern (139 bp):
TGATACATTTGAGTTAAATTCGTTCACTCAATACAATCCTATTTTATCTCATCGTCACCATTATG
TCTTCTTAATGATTAATATGATCACTGTCAACAAATAACTATGATAATTTGCTCGTTCGAGAACA
AGCAACCCG
Done.