Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 226 of 259
Found at i:71318437 original size:363 final size:363
Alignment explanation
Indices: 71318044--71318839 Score: 1396
Period size: 363 Copynumber: 2.2 Consensus size: 363
71318034 AATAGATTGA
71318044 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
* * *
71318109 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
* *
71318174 AAGCAGATCAAAGATGGCAGATTTTACCTCCTTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
* *
71318239 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGA
196 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
* *
71318304 CTACA-GTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGGATAGATTGA
261 CTACATG-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
*
71318368 AAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
325 AAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
*
71318407 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
*
71318472 CTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
* *
71318537 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
*
71318602 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACTTCCCTGA
196 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
71318667 CTACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAA
261 CTACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAA
* *
71318732 GATTGTAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
326 AATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
* * *
71318770 AGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
71318835 CTCCC
66 CTCCC
71318840 GGGGCAAGAA
Statistics
Matches: 410, Mismatches: 22, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
363 409 1.00
364 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (363 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
CTACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAA
AATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
Found at i:71318637 original size:134 final size:134
Alignment explanation
Indices: 71318273--71318639 Score: 644
Period size: 134 Copynumber: 2.7 Consensus size: 134
71318263 AATAGATTGA
71318273 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * * *
71318338 CTCCCTGTATTTGGCAGTGGGATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
71318403 AAGC
131 AAGC
71318407 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
71318472 CTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
71318537 AAGC
131 AAGC
* * *
71318541 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
71318606 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
71318640 CAAAGATGGC
Statistics
Matches: 221, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 221 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
AAGC
Found at i:71318648 original size:229 final size:229
Alignment explanation
Indices: 71318407--71318839 Score: 724
Period size: 229 Copynumber: 1.9 Consensus size: 229
71318397 GCAGCGAAGC
*
71318407 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACA-GTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATG-GGAGTACATTGAAGCCGATAACTCTA
*
71318471 TCTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGC
65 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGC
* *
71318536 GAAGCAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAAC
130 AAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAAC
71318601 TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
195 TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
*
71318636 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
* * *
71318701 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCA
* * * * **
71318766 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
71318831 CTATCTCCC
196 CTATCTCCC
71318840 GGGGCAAGAA
Statistics
Matches: 189, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
229 188 0.99
230 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCA
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
CTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:71318901 original size:44 final size:44
Alignment explanation
Indices: 71318847--71319132 Score: 294
Period size: 44 Copynumber: 6.5 Consensus size: 44
71318837 CCCGGGGCAA
* *
71318847 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * * *
71318891 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * * * * *
71318934 CGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGG-CG
1 -GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* *
71318978 TGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
1 -GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * *
71319023 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGATAG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * * * *
71319066 GAAGTGGATCCAAGATA-CAGATCTTGTCTT-CTCATACTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCT-ATATTGGTAG
*
71319109 TGAAGTAGATCGAAGAAAGCAGAT
1 -GAAGTAGATCGAAGATAGCAGAT
71319133 TTTGTCCCTG
Statistics
Matches: 199, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.01
43 81 0.41
44 91 0.46
45 25 0.13
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
Found at i:71319165 original size:175 final size:176
Alignment explanation
Indices: 71318847--71319167 Score: 443
Period size: 175 Copynumber: 1.8 Consensus size: 176
71318837 CCCGGGGCAA
* * * *
71318847 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
* * * *
71318912 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGC
66 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGTATTGAC
71318977 GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
131 GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
* * *
71319023 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
* * * * *
71319087 TCTTGTCTTCTCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGAT-TT-TGTCCCTGTATTTGA
66 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGTA-TTGA
71319150 CAGTGGAA-TAGATCGAAG
130 C-GT-GAAGTAGATCGAAG
71319168 ATTACAGTCT
Statistics
Matches: 126, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
173 7 0.06
174 6 0.05
175 95 0.75
176 18 0.14
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (176 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGTATTGAC
GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
Found at i:71320298 original size:3 final size:3
Alignment explanation
Indices: 71320274--71320344 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
71320264 AATATCCTTG
* * * *
71320274 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
71320321 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
71320345 GTACGCGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:71320341 original size:23 final size:22
Alignment explanation
Indices: 71320286--71320347 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
71320276 ATTTTTATAT
*
71320286 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
71320307 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
71320329 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
71320348 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:71320354 original size:23 final size:23
Alignment explanation
Indices: 71320310--71320355 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
71320300 GTATTACTAT
**
71320310 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
71320333 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
71320356 CATATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:71320419 original size:25 final size:24
Alignment explanation
Indices: 71320372--71320419 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
71320362 TATATTTTCA
*
71320372 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
71320396 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
71320420 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:71322993 original size:62 final size:62
Alignment explanation
Indices: 71322927--71323110 Score: 314
Period size: 62 Copynumber: 3.0 Consensus size: 62
71322917 CACGTATCTC
*
71322927 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
71322989 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * * *
71323051 TTCATGCATCAACATTTCATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
71323111 TCGAGTTTAG
Statistics
Matches: 115, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 115 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.34
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:71324350 original size:10 final size:10
Alignment explanation
Indices: 71324335--71324385 Score: 57
Period size: 10 Copynumber: 4.7 Consensus size: 10
71324325 CAGTGGAGAC
71324335 AAAAAAAAGA
1 AAAAAAAAGA
71324345 AAAAAAAAGTA
1 AAAAAAAAG-A
71324356 AAAAAAACGAGA
1 AAAAAAA--AGA
*
71324368 AAATAAAAATA
1 AAA-AAAAAGA
71324379 AAAAAAA
1 AAAAAAA
71324386 CCAAATAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
10 13 0.36
11 13 0.36
12 4 0.11
13 6 0.17
ACGTcount: A:0.84, C:0.02, G:0.08, T:0.06
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:71324368 original size:23 final size:22
Alignment explanation
Indices: 71324335--71324386 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
71324325 CAGTGGAGAC
71324335 AAAAAAA-AGAAAA-AAAAAGTA
1 AAAAAAACAGAAAATAAAAA-TA
71324356 AAAAAAACGAGAAAATAAAAATA
1 AAAAAAAC-AGAAAATAAAAATA
71324379 AAAAAAAC
1 AAAAAAAC
71324387 CAAATAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.25
23 16 0.57
24 5 0.18
ACGTcount: A:0.83, C:0.04, G:0.08, T:0.06
Consensus pattern (22 bp):
AAAAAAACAGAAAATAAAAATA
Found at i:71324853 original size:27 final size:29
Alignment explanation
Indices: 71324815--71324868 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
71324805 TCACTTGAAA
*
71324815 AAAAAACGAAAAGAA-AAATAAAAAAATG
1 AAAAAACGAAAAGAAGAAAGAAAAAAATG
71324843 AAAAAA-GAAAAGAAGAAAGAAAAAAA
1 AAAAAACGAAAAGAAGAAAGAAAAAAA
71324869 AAAGGAGAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.81, C:0.02, G:0.13, T:0.04
Consensus pattern (29 bp):
AAAAAACGAAAAGAAGAAAGAAAAAAATG
Found at i:71325393 original size:108 final size:108
Alignment explanation
Indices: 71325194--71325400 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 108
71325184 TAATTTATTC
* *
71325194 TCATTTTGTATTCTAGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGTTTTGCTCTCAA
1 TCATCTTGTATTCTAGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGCTTTGCTCTCAA
*
71325259 CAAATTTTCATCTTATCCATTGTGATAATATTTTCCATCTTAT
66 CAAAATTTCATCTTATCCATTGTGATAATATTTTCCATCTTAT
* * * **
71325302 TCATCTTGTA-TCTCAGCAAAATTTGCTATCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCA
1 TCATCTTGTATTCT-AGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGCTTTGCTCTCA
* * * *
71325366 ACAAAATTTCATTTTGTCCATTTTGATAATCTTTT
65 ACAAAATTTCATCTTATCCATTGTGATAATATTTT
71325401 TCAAGCATTT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 3 0.03
108 83 0.97
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (108 bp):
TCATCTTGTATTCTAGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGCTTTGCTCTCAA
CAAAATTTCATCTTATCCATTGTGATAATATTTTCCATCTTAT
Found at i:71325973 original size:86 final size:86
Alignment explanation
Indices: 71325828--71326262 Score: 658
Period size: 86 Copynumber: 5.1 Consensus size: 86
71325818 AGTAAAAATT
* * * * * *
71325828 GAAGATAAACCTTGCCTCTCTCAG-TCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCC
1 GAAGACAAACCTTGCCACTCTC-GTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCC
71325892 TGCATTGACAGCGAAGCAGATC
65 TGCATTGACAGCGAAGCAGATC
71325914 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
71325979 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
** *
71326000 GAAGACAAACCTTGCCACTCTTTTTTTTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
71326065 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* ** *
71326086 GAAGACAAACTTTGCCACTCTTTTTTTTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
71326151 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * *
71326172 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTG-CTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
71326236 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
71326258 GAAGA
1 GAAGA
71326263 TGGCAGATTT
Statistics
Matches: 325, Mismatches: 22, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
85 8 0.02
86 317 0.98
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:71326015 original size:42 final size:42
Alignment explanation
Indices: 71325882--71326015 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 42
71325872 GTTATCAGAT
71325882 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
71325924 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
71325968 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
71326010 CTTGCC
1 CTTGCC
71326016 ACTCTTTTTT
Statistics
Matches: 64, Mismatches: 18, Indels: 20
0.63 0.18 0.20
Matches are distributed among these distances:
40 1 0.02
41 13 0.20
42 20 0.31
43 2 0.03
44 14 0.22
45 13 0.20
46 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:71326387 original size:134 final size:133
Alignment explanation
Indices: 71326211--71326485 Score: 489
Period size: 134 Copynumber: 2.1 Consensus size: 133
71326201 GCAGAGCTGG
* *
71326211 TTGAAGATATCAGATCTTGCTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTAC
1 TTGAAGATATCAGATCTTGCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTAC
*
71326276 CTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAAT
66 CTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
71326341 AGA
131 AGA
71326344 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
1 TTGAAGATAT-CAGATCTTG-CTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
*
71326408 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
64 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
71326473 ATAGA
129 ATAGA
71326478 TTGAAGAT
1 TTGAAGAT
71326486 CGAAGATGGC
Statistics
Matches: 136, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
132 1 0.01
133 17 0.12
134 118 0.87
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (133 bp):
TTGAAGATATCAGATCTTGCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTAC
CTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAAT
AGA
Found at i:71326485 original size:88 final size:88
Alignment explanation
Indices: 71326367--71326587 Score: 300
Period size: 95 Copynumber: 2.4 Consensus size: 88
71326357 ATCTTGCCTT
* * **
71326367 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTA
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTA
71326431 CATTGAAGCCGATAACTCTATCTC
65 CATTGAAGCCGATAACTCTATCTC
*
71326455 CCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 CCTGTATTTGGCAGTGGAATAGA-T-----T-GAAGATGGCAGATTTTACCTCCCTGACCACAGT
*
71326520 GGAGTACATTGAAGCCGATAATTCTATCTC
59 GGAGTACATTGAAGCCGATAACTCTATCTC
*
71326550 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGAT
71326588 CTTGCCTTCC
Statistics
Matches: 118, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
88 29 0.25
89 5 0.04
94 1 0.01
95 83 0.70
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (88 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTAC
ATTGAAGCCGATAACTCTATCTC
Found at i:71326501 original size:95 final size:95
Alignment explanation
Indices: 71326387--71326580 Score: 361
Period size: 95 Copynumber: 2.0 Consensus size: 95
71326377 GCAGCGAAGC
71326387 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
71326452 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
71326482 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
71326547 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
71326577 AGAT
1 AGAT
71326581 TGCAGATCTT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:71326521 original size:229 final size:229
Alignment explanation
Indices: 71326253--71326943 Score: 1310
Period size: 229 Copynumber: 3.0 Consensus size: 229
71326243 GCAGCGAAGC
*
71326253 AGATCGAAGATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
71326318 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
71326383 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
71326448 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
71326482 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
71326547 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
71326612 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
71326677 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
71326711 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
* *
71326776 CTCCCTGTATTTGGCAGTGGGATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* *
71326841 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
* *
71326906 CTATCTCCTTGTATCTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
71326940 AGAT
1 AGAT
71326944 TGCAGATCTT
Statistics
Matches: 454, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
229 454 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (229 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:71326730 original size:95 final size:95
Alignment explanation
Indices: 71326616--71326806 Score: 355
Period size: 95 Copynumber: 2.0 Consensus size: 95
71326606 GCAGCGAAGC
71326616 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
71326681 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
71326711 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
71326776 CTCCCTGTATTTGGCAGTGGGATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
71326806 A
1 A
71326807 AATTGCAGAT
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:71326899 original size:363 final size:362
Alignment explanation
Indices: 71326482--71327276 Score: 1394
Period size: 363 Copynumber: 2.2 Consensus size: 362
71326472 AATAGATTGA
71326482 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
* * *
71326547 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
*
71326612 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
* *
71326677 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGA
196 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGA-TTTACCTCCCTGA
* *
71326742 CTACA-GTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGGATAGATTGA
260 CTACATG-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
*
71326806 AAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
324 AAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
*
71326845 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
*
71326910 CTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
* *
71326975 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
*
71327040 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTACTTCCCTGAC
196 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTACCTCCCTGAC
*
71327105 TACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAG
261 TACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAA
*
71327170 ATTGTAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
326 ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
* * *
71327207 AGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
71327272 CTCCC
66 CTCCC
71327277 GGGGCAAGAA
Statistics
Matches: 410, Mismatches: 21, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
362 173 0.42
363 237 0.58
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (362 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTACCTCCCTGAC
TACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAAA
ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
Found at i:71327075 original size:134 final size:134
Alignment explanation
Indices: 71326711--71327077 Score: 644
Period size: 134 Copynumber: 2.7 Consensus size: 134
71326701 AATAGATTGA
71326711 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * * *
71326776 CTCCCTGTATTTGGCAGTGGGATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
71326841 AAGC
131 AAGC
71326845 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
71326910 CTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
71326975 AAGC
131 AAGC
* * *
71326979 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
71327044 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
71327078 CAAAGATGGC
Statistics
Matches: 221, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 221 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
AAGC
Found at i:71327105 original size:94 final size:95
Alignment explanation
Indices: 71326979--71327171 Score: 318
Period size: 94 Copynumber: 2.0 Consensus size: 95
71326969 GAAGCGAAGC
*
71326979 AGATCAAATATGGCAGATTTTACCTCCCTGACTACA-GTGGAGTACATTAAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATG-GGAGTACATTAAAGCCGATAACTCTA
*
71327043 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
65 TCTCCCTGCATCTGGCAGTGGAATAGATTGA
* *
71327074 AGATCAAAGATGGCAGA-TTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTAAAGCCGATAACTCTAT
*
71327138 CTCCCTGTATCTGGCAGTGGAATAGATTGA
66 CTCCCTGCATCTGGCAGTGGAATAGATTGA
71327168 AGAT
1 AGAT
71327172 TGTAGATCTT
Statistics
Matches: 92, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
94 75 0.82
95 17 0.18
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTAAAGCCGATAACTCTAT
CTCCCTGCATCTGGCAGTGGAATAGATTGA
Found at i:71327149 original size:228 final size:229
Alignment explanation
Indices: 71326845--71327276 Score: 715
Period size: 228 Copynumber: 1.9 Consensus size: 229
71326835 GCAGCGAAGC
*
71326845 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
71326910 CTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCA
*
71326975 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
71327040 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
*
71327074 AGATCAAAGATGGCAGA-TTTACTTCCCTGACTACA-TGGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGT-GGAGTACATTGAAGCCGATAACTCTA
* * *
71327137 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGC
* * * * **
71327202 AAAGCAGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGT
130 AAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAAC
71327267 TCTATCTCCC
195 TCTATCTCCC
71327277 GGGGCAAGAA
Statistics
Matches: 188, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
227 1 0.01
228 171 0.91
229 16 0.09
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCA
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
CTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:71327411 original size:88 final size:84
Alignment explanation
Indices: 71327284--71327563 Score: 289
Period size: 83 Copynumber: 3.3 Consensus size: 84
71327274 CCCGGGGCAA
* *
71327284 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGAAAGCAGAT-CTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
71327349 TCTTGTCTTCCCATATTGGTGG
65 TCTTGTCTT-CTATATTGGT-G
* * * * * * *
71327371 CGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGC
1 -GAAGTAGATCGAAGAAAGCAGATC-TATCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT-GC
*
71327435 AGATC-TATCTTCTATATTGGTAG
62 AGATCTTGTCTTCTATATTGGT-G
* * * * * *
71327458 GAAGTGGATCGAAG--ATCAGATCTGTCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGAT
1 GAAGTAGATCGAAGAAAGCAGATCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGAT
*
71327521 CTTGTCTTCTATACTGGTG
66 CTTGTCTTCTATATTGGTG
71327540 TGAAGTAGATCGAAGAAAGCAGAT
1 -GAAGTAGATCGAAGAAAGCAGAT
71327564 TTGTCCTGTA
Statistics
Matches: 156, Mismatches: 28, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
82 7 0.04
83 52 0.33
84 8 0.05
85 6 0.04
86 12 0.08
87 12 0.08
88 52 0.33
89 7 0.04
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (84 bp):
GAAGTAGATCGAAGAAAGCAGATCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGAT
CTTGTCTTCTATATTGGTG
Found at i:71327597 original size:83 final size:84
Alignment explanation
Indices: 71327327--71327602 Score: 217
Period size: 83 Copynumber: 3.2 Consensus size: 84
71327317 TATATTGGTA
* * * * *
71327327 GGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAACA
1 GGAAGTAGATCGAAGATACAGATCTTGTCTT-CTATATTGGTAG-GAAGTAGATCGAAGAAAACA
* *
71327392 GATCTTATCTTCATGTA-TTGGC-G
64 GAT-TTGTC--C-TGTATTTGACAG
* * * * *
71327415 TGAAGTAGATCGAAGGTAGCAGATC-TATCTTCTATATTGGTAGGAAGTGGATCGAAG--ATCAG
1 GGAAGTAGATCGAAGATA-CAGATCTTGTCTTCTATATTGGTAGGAAGTAGATCGAAGAAAACAG
* * * *
71327477 ATCTGTCTTCCTATATTGATA-
65 ATTTGTCCT-GTAT-TTGACAG
* * * *
71327498 GGAAGTGGATCCAAGATACAGATCTTGTCTTCTATACTGGT-GTGAAGTAGATCGAAGAAAGCAG
1 GGAAGTAGATCGAAGATACAGATCTTGTCTTCTATATTGGTAG-GAAGTAGATCGAAGAAAACAG
71327562 ATTTGTCCTGTATTTGACAG
65 ATTTGTCCTGTATTTGACAG
71327582 GGAA-TAGATCGAAGATTACAG
1 GGAAGTAGATCGAAGA-TACAG
71327603 TCTACTCCCT
Statistics
Matches: 147, Mismatches: 30, Indels: 26
0.72 0.15 0.13
Matches are distributed among these distances:
80 1 0.01
81 2 0.01
82 7 0.05
83 61 0.41
84 18 0.12
85 11 0.07
86 12 0.08
87 10 0.07
88 19 0.13
89 6 0.04
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (84 bp):
GGAAGTAGATCGAAGATACAGATCTTGTCTTCTATATTGGTAGGAAGTAGATCGAAGAAAACAGA
TTTGTCCTGTATTTGACAG
Found at i:71328707 original size:3 final size:3
Alignment explanation
Indices: 71328684--71328752 Score: 54
Period size: 3 Copynumber: 23.3 Consensus size: 3
71328674 AATATCCTTG
* * *
71328684 TTA TT- TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
71328729 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
71328753 GTACGCGTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
2 6 0.12
3 39 0.76
4 6 0.12
ACGTcount: A:0.32, C:0.01, G:0.06, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:71328826 original size:25 final size:24
Alignment explanation
Indices: 71328779--71328826 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
71328769 ATATATTTCA
*
71328779 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
71328803 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
71328827 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:71329234 original size:20 final size:20
Alignment explanation
Indices: 71329190--71329236 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
71329180 CATTTTTAAA
71329190 ACTTTATAATTTTATTCATTT
1 ACTTTATAATTTTATT-ATTT
*
71329211 -CTTTATTATTATTATT-TTT
1 ACTTTATAATT-TTATTATTT
71329230 ACTTTAT
1 ACTTTAT
71329237 GTTTATTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
19 3 0.13
20 15 0.65
21 5 0.22
ACGTcount: A:0.26, C:0.09, G:0.00, T:0.66
Consensus pattern (20 bp):
ACTTTATAATTTTATTATTT
Found at i:71331434 original size:62 final size:62
Alignment explanation
Indices: 71331280--71331462 Score: 305
Period size: 62 Copynumber: 3.0 Consensus size: 62
71331270 CACGTATCTC
*
71331280 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCC-AAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
71331341 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * * *
71331403 TTCATGCATCAACATTTCATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
71331463 TCGAGTTTAG
Statistics
Matches: 114, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
61 49 0.43
62 65 0.57
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:71332696 original size:10 final size:10
Alignment explanation
Indices: 71332681--71332731 Score: 57
Period size: 10 Copynumber: 4.7 Consensus size: 10
71332671 CAGTGGAGAC
71332681 AAAAAAAAGA
1 AAAAAAAAGA
71332691 AAAAAAAAGTA
1 AAAAAAAAG-A
71332702 AAAAAAACGAGA
1 AAAAAAA--AGA
*
71332714 AAATAAAAATA
1 AAA-AAAAAGA
71332725 AAAAAAA
1 AAAAAAA
71332732 CCAAATAAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
10 13 0.36
11 13 0.36
12 4 0.11
13 6 0.17
ACGTcount: A:0.84, C:0.02, G:0.08, T:0.06
Consensus pattern (10 bp):
AAAAAAAAGA
Found at i:71332714 original size:23 final size:22
Alignment explanation
Indices: 71332681--71332732 Score: 72
Period size: 23 Copynumber: 2.4 Consensus size: 22
71332671 CAGTGGAGAC
71332681 AAAAAAA-AGAAAA-AAAAAGTA
1 AAAAAAACAGAAAATAAAAA-TA
71332702 AAAAAAACGAGAAAATAAAAATA
1 AAAAAAAC-AGAAAATAAAAATA
71332725 AAAAAAAC
1 AAAAAAAC
71332733 CAAATAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.25
23 16 0.57
24 5 0.18
ACGTcount: A:0.83, C:0.04, G:0.08, T:0.06
Consensus pattern (22 bp):
AAAAAAACAGAAAATAAAAATA
Found at i:71332737 original size:14 final size:15
Alignment explanation
Indices: 71332720--71332748 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
71332710 GAGAAAATAA
71332720 AAATAAAA-AAAACC
1 AAATAAAAGAAAACC
71332734 AAATAAAAGAAAACC
1 AAATAAAAGAAAACC
71332749 TCTACTTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.76, C:0.14, G:0.03, T:0.07
Consensus pattern (15 bp):
AAATAAAAGAAAACC
Found at i:71333196 original size:27 final size:29
Alignment explanation
Indices: 71333158--71333211 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
71333148 TTCACTTGAA
*
71333158 AAAAAACGAAAAGAA-AAATAAAAAAATG
1 AAAAAACGAAAAGAAGAAAGAAAAAAATG
71333186 AAAAAA-GAAAAGAAGAAAGAAAAAAA
1 AAAAAACGAAAAGAAGAAAGAAAAAAA
71333212 AAGGAGAGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.33
28 16 0.67
ACGTcount: A:0.81, C:0.02, G:0.13, T:0.04
Consensus pattern (29 bp):
AAAAAACGAAAAGAAGAAAGAAAAAAATG
Found at i:71333735 original size:108 final size:108
Alignment explanation
Indices: 71333536--71333742 Score: 290
Period size: 108 Copynumber: 1.9 Consensus size: 108
71333526 TAATTTATTC
* *
71333536 TCATTTTGTATTCTAGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGTTTTGCTCTCAA
1 TCATCTTGTATTCTAGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGCTTTGCTCTCAA
*
71333601 CAAATTTTCATCTTATCCATTGTGATAATATTTTCCATCTTAT
66 CAAAATTTCATCTTATCCATTGTGATAATATTTTCCATCTTAT
* * * **
71333644 TCATCTTGTA-TCTCAGCAAAATTTGCTATCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCA
1 TCATCTTGTATTCT-AGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGCTTTGCTCTCA
* * * *
71333708 ACAAAATTTCATTTTGTCCATTTTGATAATCTTTT
65 ACAAAATTTCATCTTATCCATTGTGATAATATTTT
71333743 TCAAGCATTT
Statistics
Matches: 86, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
107 3 0.03
108 83 0.97
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (108 bp):
TCATCTTGTATTCTAGCAAAATTTGCTATCCTGATTAATGTGTTCATTTAGAGCTTTGCTCTCAA
CAAAATTTCATCTTATCCATTGTGATAATATTTTCCATCTTAT
Found at i:71334315 original size:86 final size:86
Alignment explanation
Indices: 71334170--71334605 Score: 658
Period size: 86 Copynumber: 5.1 Consensus size: 86
71334160 AGTAAAAATT
* * * * * *
71334170 GAAGATAAACCTTGCCTCTCTCAG-TCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCC
1 GAAGACAAACCTTGCCACTCTC-GTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCC
71334234 TGCATTGACAGCGAAGCAGATC
65 TGCATTGACAGCGAAGCAGATC
71334256 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
71334321 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
** *
71334342 GAAGACAAACCTTGCCACTCTTTTTTTTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
71334407 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* ** *
71334428 GAAGACAAACTTTGCCACTCTTTTTTTTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
*
71334493 GCACTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* * * * *
71334514 GAAGACAAACCTTGCCTCTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
* *
71334579 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
71334601 GAAGA
1 GAAGA
71334606 TGGCAGATTT
Statistics
Matches: 325, Mismatches: 23, Indels: 3
0.93 0.07 0.01
Matches are distributed among these distances:
85 1 0.00
86 303 0.93
87 21 0.06
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:71334357 original size:42 final size:42
Alignment explanation
Indices: 71334224--71334357 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 42
71334214 GTTATCAGAT
71334224 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
71334266 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
71334310 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
71334352 CTTGCC
1 CTTGCC
71334358 ACTCTTTTTT
Statistics
Matches: 64, Mismatches: 18, Indels: 20
0.63 0.18 0.20
Matches are distributed among these distances:
40 1 0.02
41 13 0.20
42 20 0.31
43 2 0.03
44 14 0.22
45 13 0.20
46 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:71334794 original size:134 final size:134
Alignment explanation
Indices: 71334553--71334828 Score: 491
Period size: 134 Copynumber: 2.1 Consensus size: 134
71334543 GCAGAGCTGG
* * *
71334553 TTGAAGATATCAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTTA
1 TTGAAGATATCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
*
71334618 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
71334683 TAGA
131 TAGA
71334687 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
1 TTGAAGATAT-CAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
*
71334751 ACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGA
71334816 ATAGA
130 ATAGA
71334821 TTGAAGAT
1 TTGAAGAT
71334829 CGAAGATGGC
Statistics
Matches: 136, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
133 1 0.01
134 135 0.99
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATATCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:71334828 original size:88 final size:88
Alignment explanation
Indices: 71334710--71334930 Score: 300
Period size: 95 Copynumber: 2.4 Consensus size: 88
71334700 ATCTTGCCTT
* * **
71334710 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTA
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTA
71334774 CATTGAAGCCGATAACTCTATCTC
65 CATTGAAGCCGATAACTCTATCTC
*
71334798 CCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGT
1 CCTGTATTTGGCAGTGGAATAGA-T-----T-GAAGATGGCAGATTTTACCTCCCTGACCACAGT
*
71334863 GGAGTACATTGAAGCCGATAATTCTATCTC
59 GGAGTACATTGAAGCCGATAACTCTATCTC
*
71334893 CCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGAT
71334931 CTTGCCTTCC
Statistics
Matches: 118, Mismatches: 7, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
88 29 0.25
89 5 0.04
94 1 0.01
95 83 0.70
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (88 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTAC
ATTGAAGCCGATAACTCTATCTC
Found at i:71334844 original size:95 final size:95
Alignment explanation
Indices: 71334730--71334923 Score: 361
Period size: 95 Copynumber: 2.0 Consensus size: 95
71334720 GCAGCGAAGC
71334730 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
71334795 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
71334825 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
71334890 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
71334920 AGAT
1 AGAT
71334924 TGCAGATCTT
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:71334864 original size:229 final size:229
Alignment explanation
Indices: 71334596--71335286 Score: 1310
Period size: 229 Copynumber: 3.0 Consensus size: 229
71334586 GCAGCGAAGC
*
71334596 AGATCGAAGATGGCAGATTTTACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
71334661 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
71334726 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
71334791 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
71334825 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
71334890 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
71334955 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
71335020 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
*
71335054 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
* *
71335119 CTCCCTGTATTTGGCAGTGGGATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
* *
71335184 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
* *
71335249 CTATCTCCTTGTATCTGGCAGTGGAATAGATTGA
196 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
71335283 AGAT
1 AGAT
71335287 TGCAGATCTT
Statistics
Matches: 454, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
229 454 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (229 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:71335073 original size:95 final size:95
Alignment explanation
Indices: 71334959--71335515 Score: 358
Period size: 95 Copynumber: 6.0 Consensus size: 95
71334949 GCAGCGAAGC
71334959 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
71335024 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
71335054 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
71335119 CTCCCTGTATTTGGCAGTGGGATAGATT--
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * *** * * * * * ** ** *
71335147 -G---AAA-ATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATT
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A--CCACAGTGGAGTACATTGAAGCCGATA-ACT
* * * * * *
71335207 TTACCTCCCTG-A-CT-ACAGTGGAGTACATTGA
62 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * * * * ** * * ** * *
71335238 AG--C--CGAT---A-ACTCTATCTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATC
1 AGATCAAAGATGGCAGATTTTACCTCCCTG-A-C-CACAGTGGAGTACATTGAAG-CCG-ATAAC
** * * * * *
71335295 T-TGCCTTCCTGTAATTGGAAG-CG---A-A--GC
61 TCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
* * *
71335322 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
71335387 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGA
* *
71335417 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACA-TGGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGT-GGAGTACATTGAAGCCGATAACTCTA
*
71335481 TCTCCCTGTATCTGGCAGTGGAATAGATTGA
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
71335512 AGAT
1 AGAT
71335516 TGTAGATCTT
Statistics
Matches: 348, Mismatches: 82, Indels: 64
0.70 0.17 0.13
Matches are distributed among these distances:
84 3 0.01
86 2 0.01
87 6 0.02
88 66 0.19
89 35 0.10
90 5 0.01
91 20 0.06
92 26 0.07
93 1 0.00
94 1 0.00
95 183 0.53
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGA
Found at i:71335218 original size:363 final size:363
Alignment explanation
Indices: 71334825--71335620 Score: 1405
Period size: 363 Copynumber: 2.2 Consensus size: 363
71334815 AATAGATTGA
71334825 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
* * *
71334890 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
*
71334955 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
* *
71335020 CTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCGAAGATGGCAGATTTTACCTCCCTGA
196 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
* *
71335085 CTACA-GTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGGATAGATTGA
261 CTACATG-GGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGA
*
71335149 AAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGC
325 AAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
*
71335188 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
*
71335253 CTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
* *
71335318 AAGCAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
*
71335383 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACTTCCCTGA
196 CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
71335448 CTACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAA
261 CTACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAA
* *
71335513 GATTGTAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
326 AATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
* * *
71335551 AGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
71335616 CTCCC
66 CTCCC
71335621 GGGGCAAGAA
Statistics
Matches: 411, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
363 410 1.00
364 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.29
Consensus pattern (363 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTAAAGCCGATAACT
CTATCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGA
CTACATGGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATCTGGCAGTGGAATAGATTGAA
AATTGCAGATCTTGCCTTCCTGTATTTGGCAGCAAAGC
Found at i:71335418 original size:134 final size:134
Alignment explanation
Indices: 71335054--71335420 Score: 644
Period size: 134 Copynumber: 2.7 Consensus size: 134
71335044 AATAGATTGA
71335054 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* * * *
71335119 CTCCCTGTATTTGGCAGTGGGATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
71335184 AAGC
131 AAGC
71335188 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
71335253 CTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
71335318 AAGC
131 AAGC
* * *
71335322 AGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTAT
1 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
71335387 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGAT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
71335421 CAAAGATGGC
Statistics
Matches: 221, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 221 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCGAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCG
AAGC
Found at i:71335429 original size:229 final size:229
Alignment explanation
Indices: 71335188--71335620 Score: 724
Period size: 229 Copynumber: 1.9 Consensus size: 229
71335178 GCAGCGAAGC
*
71335188 AGATCGAAGATGGCAGATTTTACCTCCCTGACTACA-GTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATG-GGAGTACATTGAAGCCGATAACTCTA
*
71335252 TCTCCTTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGC
65 TCTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGC
* *
71335317 GAAGCAGATCAAATATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAAC
130 AAAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAAC
71335382 TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
195 TCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
*
71335417 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
* * *
71335482 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGTAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCA
* * * * **
71335547 AAGCAGATCGAAGATGGCAGATTTTACCTCCCTGATTACAGTGGAGTACATTGAAGCTGATAGTT
131 AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
71335612 CTATCTCCC
196 CTATCTCCC
71335621 GGGGCAAGAA
Statistics
Matches: 189, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
229 188 0.99
230 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (229 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATCTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTAATTGGAAGCA
AAGCAGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACT
CTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:71335682 original size:44 final size:44
Alignment explanation
Indices: 71335628--71335913 Score: 294
Period size: 44 Copynumber: 6.5 Consensus size: 44
71335618 CCCGGGGCAA
* *
71335628 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * * *
71335672 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * * * * *
71335715 CGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGG-CG
1 -GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* *
71335759 TGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
1 -GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * *
71335804 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGATAG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
* * * * *
71335847 GAAGTGGATCCAAGATA-CAGATCTTGTCTT-CTCATACTGGTGG
1 GAAGTAGATCGAAGATAGCAGATCTTATCTTCCT-ATATTGGTAG
*
71335890 TGAAGTAGATCGAAGAAAGCAGAT
1 -GAAGTAGATCGAAGATAGCAGAT
71335914 TTTGTCCCTG
Statistics
Matches: 199, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.01
43 81 0.41
44 91 0.46
45 25 0.13
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (44 bp):
GAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATTGGTAG
Found at i:71335946 original size:175 final size:176
Alignment explanation
Indices: 71335628--71335948 Score: 443
Period size: 175 Copynumber: 1.8 Consensus size: 176
71335618 CCCGGGGCAA
* * * *
71335628 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
* * * *
71335693 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTATCTTCATGTATTGGC
66 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGTATTGAC
71335758 GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
131 GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
* * *
71335804 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
* * * * *
71335868 TCTTGTCTTCTCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGAT-TT-TGTCCCTGTATTTGA
66 TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGTA-TTGA
71335931 CAGTGGAA-TAGATCGAAG
130 C-GT-GAAGTAGATCGAAG
71335949 ATTACAGTCT
Statistics
Matches: 126, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
173 7 0.06
174 6 0.05
175 95 0.75
176 18 0.14
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (176 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATACAGA
TCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAACAGATCTTATCTCCATGTATTGAC
GTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG
Found at i:71337078 original size:3 final size:3
Alignment explanation
Indices: 71337054--71337124 Score: 63
Period size: 3 Copynumber: 23.3 Consensus size: 3
71337044 AATATCCTTG
* * * *
71337054 TTA TTT TTA -TA TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
71337101 TGTA TTA GTA TATA TTT TTA TTA T
1 T-TA TTA TTA T-TA TTA TTA TTA T
71337125 GTACGCGTAT
Statistics
Matches: 53, Mismatches: 12, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
2 2 0.04
3 45 0.85
4 6 0.11
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:71337121 original size:23 final size:22
Alignment explanation
Indices: 71337066--71337127 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
71337056 ATTTTTATAT
*
71337066 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
71337087 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
71337109 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
71337128 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:71337134 original size:23 final size:23
Alignment explanation
Indices: 71337090--71337135 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
71337080 GTATTACTAT
**
71337090 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
71337113 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
71337136 CATATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:71337199 original size:25 final size:24
Alignment explanation
Indices: 71337152--71337199 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
71337142 TATATTTTCA
*
71337152 TATTTAATATTTTTATTTCATTTT
1 TATTTAATATTTTTATTTAATTTT
71337176 TATTCTAATA-TTTTATTATAATTT
1 TATT-TAATATTTTTATT-TAATTT
71337200 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TATTTAATATTTTTATTTAATTTT
Found at i:71340246 original size:6 final size:6
Alignment explanation
Indices: 71340210--71340242 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
71340200 ATTGAAAGAC
*
71340210 AAACCA AAACCA AAACCA AAACCA AAATCA AAA
1 AAACCA AAACCA AAACCA AAACCA AAACCA AAA
71340243 TCAAGTTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.70, C:0.27, G:0.00, T:0.03
Consensus pattern (6 bp):
AAACCA
Found at i:71344332 original size:46 final size:46
Alignment explanation
Indices: 71344282--71344457 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
71344272 TGGTTGAGTA
71344282 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
71344328 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
71344373 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
71344421 CCCGAGCTCGTTGAGTTGAGACCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
71344458 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:71344440 original size:93 final size:93
Alignment explanation
Indices: 71344281--71344450 Score: 295
Period size: 93 Copynumber: 1.8 Consensus size: 93
71344271 ATGGTTGAGT
*
71344281 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
* *
71344346 AGTCTGAGTTCGTGAGATGTAACTAGGC
66 AGACCGAGTTCGTGAGATGTAACTAGGC
* *
71344374 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
71344439 AGACCGAGTTCG
66 AGACCGAGTTCG
71344451 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
AGACCGAGTTCGTGAGATGTAACTAGGC
Found at i:71346147 original size:17 final size:18
Alignment explanation
Indices: 71346114--71346147 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71346104 TATCTCTTAA
71346114 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
71346132 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
71346148 AAAACAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:71347342 original size:41 final size:41
Alignment explanation
Indices: 71347297--71347400 Score: 172
Period size: 41 Copynumber: 2.5 Consensus size: 41
71347287 TTTTTTGCGA
* *
71347297 CGTTTTTCCAAAAGCGCCGCTAAAACCACGATCTATAGCGG
1 CGTTTTTCCAAAAGCGCCGCTAAAACCACGACCTATAGCAG
* *
71347338 CGTTTTTCCAAGAGCGCCGCTAAAACCTCGACCTATAGCAG
1 CGTTTTTCCAAAAGCGCCGCTAAAACCACGACCTATAGCAG
71347379 CGTTTTTCCAAAAGCGCCGCTA
1 CGTTTTTCCAAAAGCGCCGCTA
71347401 TTGTTCAGTT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.27, C:0.31, G:0.19, T:0.23
Consensus pattern (41 bp):
CGTTTTTCCAAAAGCGCCGCTAAAACCACGACCTATAGCAG
Found at i:71347431 original size:41 final size:41
Alignment explanation
Indices: 71347386--71347464 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
71347376 CAGCGTTTTT
* *
71347386 CCAAAAGCGCCGCTATTGTTCAGTTTTTAGCGGCGTTTGGA
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
71347427 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTT
1 CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTT
71347465 TATTGCAAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (41 bp):
CCAAAAACGCCGCTATTGCTCAGTTTTTAGCGGCGTTTGGA
Found at i:71347526 original size:12 final size:12
Alignment explanation
Indices: 71347511--71347535 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71347501 TTTTTTGTTC
71347511 AAACGCCACTAA
1 AAACGCCACTAA
71347523 AAACGCCACTAA
1 AAACGCCACTAA
71347535 A
1 A
71347536 GCCCTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (12 bp):
AAACGCCACTAA
Found at i:71347770 original size:20 final size:20
Alignment explanation
Indices: 71347732--71347779 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
71347722 TAAATTCTAA
* **
71347732 AAAGATAAATACATTTAATT
1 AAAGATAAATAAAGATAATT
71347752 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
71347772 AAA-ATAAA
1 AAAGATAAA
71347780 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:71347881 original size:5 final size:5
Alignment explanation
Indices: 71347828--71347862 Score: 61
Period size: 5 Copynumber: 6.8 Consensus size: 5
71347818 TAATTATCCT
71347828 AATATA AATAA AATAA AATAA AATAA AATAA AATA
1 AATA-A AATAA AATAA AATAA AATAA AATAA AATA
71347863 GAGTCTTCCA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 25 0.86
6 4 0.14
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AATAA
Found at i:71353209 original size:43 final size:43
Alignment explanation
Indices: 71353148--71353233 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
71353138 AAACCAAATC
71353148 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
1 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
71353191 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
1 TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
71353234 CTTCAAACAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.37, C:0.21, G:0.14, T:0.28
Consensus pattern (43 bp):
TGCAATGTAAAATGTAATAGCGAGCATTCACCATCTCATCTAA
Found at i:71361411 original size:13 final size:13
Alignment explanation
Indices: 71361375--71361412 Score: 60
Period size: 12 Copynumber: 3.0 Consensus size: 13
71361365 CAACAACACG
71361375 AAAAATAAATAGT
1 AAAAATAAATAGT
*
71361388 AGAAA-AAATAGT
1 AAAAATAAATAGT
71361400 AAAAATAAATAGT
1 AAAAATAAATAGT
71361413 GTAATACATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (13 bp):
AAAAATAAATAGT
Found at i:71362569 original size:3 final size:3
Alignment explanation
Indices: 71362563--71362601 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
71362553 TTTTGTGCCT
* *
71362563 TTA TTA TTA TTG TTA TTA TTG TTA TTA TTA TTA TCTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TT
71362602 TATTTATTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:71369684 original size:26 final size:25
Alignment explanation
Indices: 71369655--71369760 Score: 68
Period size: 26 Copynumber: 4.0 Consensus size: 25
71369645 TTAGAATAGG
* *
71369655 TAATATGGGCCAAAGTTTGAAATAAA
1 TAATATGGG-AAAAGTTTAAAATAAA
*
71369681 TAATATACGGGAAAAGTTTAAAATGAA
1 TAATAT--GGGAAAAGTTTAAAATAAA
** * * *
71369708 TAATATGTAAAATAATTTAAGATAAT
1 TAATATGGGAAA-AGTTTAAAATAAA
** *
71369734 TAATATATGAATGAGTTTAAAATAAA
1 TAATATGGGAA-AAGTTTAAAATAAA
71369760 T
1 T
71369761 GTTATGTAAA
Statistics
Matches: 61, Mismatches: 15, Indels: 8
0.73 0.18 0.10
Matches are distributed among these distances:
25 4 0.07
26 35 0.57
27 19 0.31
28 3 0.05
ACGTcount: A:0.51, C:0.03, G:0.14, T:0.32
Consensus pattern (25 bp):
TAATATGGGAAAAGTTTAAAATAAA
Found at i:71369945 original size:25 final size:25
Alignment explanation
Indices: 71369865--71369949 Score: 79
Period size: 25 Copynumber: 3.4 Consensus size: 25
71369855 TAATATATAT
* *
71369865 AATTTTAAAGTAAATAA--TAAAAC
1 AATTTTAAAATAAATAATGTAAAAG
*
71369888 AA-TTTAAAATGAAA-AATGCATAAAG
1 AATTTTAAAAT-AAATAATGTA-AAAG
*
71369913 CAAGTTTAAAATAAATAATGTAAAAG
1 -AATTTTAAAATAAATAATGTAAAAG
71369939 AATTTTAAAAT
1 AATTTTAAAAT
71369950 CTATATTACA
Statistics
Matches: 50, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
22 9 0.18
23 5 0.10
24 1 0.02
25 13 0.26
26 9 0.18
27 13 0.26
ACGTcount: A:0.59, C:0.04, G:0.08, T:0.29
Consensus pattern (25 bp):
AATTTTAAAATAAATAATGTAAAAG
Found at i:71370302 original size:21 final size:20
Alignment explanation
Indices: 71370249--71370302 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 20
71370239 AAATAACTTA
*
71370249 AAATATAAAATAATTTGAAAT
1 AAATAT-AAATAATTTGAAAG
*
71370270 AAATATATAATAATTTTTAAAG
1 AAATATA-AATAA-TTTGAAAG
*
71370292 AATTATAAATA
1 AAATATAAATA
71370303 TCTAAAAAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.04
21 15 0.54
22 12 0.43
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.37
Consensus pattern (20 bp):
AAATATAAATAATTTGAAAG
Found at i:71371830 original size:5 final size:5
Alignment explanation
Indices: 71371820--71371868 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
71371810 ATCCTAAATT
*
71371820 AATAA AATAA AA-ATA AATAA AA-AT AATAA AACT-A AATAA AATAA AATAA
1 AATAA AATAA AATA-A AATAA AATAA AATAA AA-TAA AATAA AATAA AATAA
71371869 TATCTTCTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
4 5 0.14
5 30 0.81
6 2 0.05
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (5 bp):
AATAA
Found at i:71371836 original size:19 final size:19
Alignment explanation
Indices: 71371814--71371868 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
71371804 AGCCGAATCC
71371814 TAAATTAATAAAATAAAAA
1 TAAATTAATAAAATAAAAA
* *
71371833 TAAA-TAAAAATAATAAAAC
1 TAAATTAATAA-AATAAAAA
*
71371852 TAAATAAAATAAAATAA
1 TAAAT-TAATAAAATAA
71371869 TATCTTCTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 5 0.17
19 15 0.52
20 5 0.17
21 4 0.14
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (19 bp):
TAAATTAATAAAATAAAAA
Found at i:71371839 original size:10 final size:10
Alignment explanation
Indices: 71371824--71371864 Score: 59
Period size: 9 Copynumber: 4.3 Consensus size: 10
71371814 TAAATTAATA
71371824 AAATAAAAAT
1 AAATAAAAAT
71371834 AAATAAAAAT
1 AAATAAAAAT
*
71371844 -AATAAAACT
1 AAATAAAAAT
71371853 AAAT-AAAAT
1 AAATAAAAAT
71371862 AAA
1 AAA
71371865 ATAATATCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 15 0.54
10 13 0.46
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:71371846 original size:24 final size:23
Alignment explanation
Indices: 71371814--71371870 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
71371804 AGCCGAATCC
*
71371814 TAAATTAATAAAA-TAAAAATAAA
1 TAAAATAATAAAACTAAAAA-AAA
*
71371837 TAAAAATAATAAAACTAAATAAAA
1 T-AAAATAATAAAACTAAAAAAAA
71371861 TAAAATAATA
1 TAAAATAATA
71371871 TCTTCTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 10 0.33
24 15 0.50
25 5 0.17
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.25
Consensus pattern (23 bp):
TAAAATAATAAAACTAAAAAAAA
Found at i:71372154 original size:13 final size:13
Alignment explanation
Indices: 71372136--71372160 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71372126 GTCTTACTCG
71372136 CACACATATATCA
1 CACACATATATCA
71372149 CACACATATATC
1 CACACATATATC
71372161 GAAATCACAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (13 bp):
CACACATATATCA
Found at i:71372992 original size:10 final size:10
Alignment explanation
Indices: 71372977--71373002 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
71372967 CAAAAACATA
71372977 AAAATCGAAC
1 AAAATCGAAC
71372987 AAAATCGAAC
1 AAAATCGAAC
71372997 AAAATC
1 AAAATC
71373003 CATACCTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.19, G:0.08, T:0.12
Consensus pattern (10 bp):
AAAATCGAAC
Found at i:71375640 original size:31 final size:30
Alignment explanation
Indices: 71375585--71375643 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
71375575 GTAAATACTC
***
71375585 AAAATTTGAAGGGTTAAAGTGTAAATATAA
1 AAAATTTGAAGGACCAAAGTGTAAATATAA
71375615 AAAATTTGAAGGACCAATAGTGTAAATAT
1 AAAATTTGAAGGACCAA-AGTGTAAATAT
71375644 TCTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.49, C:0.03, G:0.19, T:0.29
Consensus pattern (30 bp):
AAAATTTGAAGGACCAAAGTGTAAATATAA
Found at i:71375920 original size:11 final size:11
Alignment explanation
Indices: 71375900--71375940 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
71375890 ATTTTTTTAA
71375900 ATTA-TATTTT
1 ATTATTATTTT
71375910 ATTATTATTTT
1 ATTATTATTTT
*
71375921 ATTATTATTTC
1 ATTATTATTTT
71375932 ATGTATTAT
1 AT-TATTAT
71375941 ATAAGGAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
10 4 0.14
11 18 0.64
12 6 0.21
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:71377277 original size:13 final size:13
Alignment explanation
Indices: 71377256--71377288 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
71377246 TTTAGTTAAA
*
71377256 TTAGTTAATTAGT
1 TTAGATAATTAGT
71377269 TTAGATAATTAGT
1 TTAGATAATTAGT
71377282 TTA-ATAA
1 TTAGATAA
71377289 ACAAACCCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (13 bp):
TTAGATAATTAGT
Found at i:71377905 original size:35 final size:37
Alignment explanation
Indices: 71377874--71377970 Score: 148
Period size: 35 Copynumber: 2.7 Consensus size: 37
71377864 ATAATCTTCA
71377874 ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
*
71377911 ATGA-TACAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
71377946 ATGATATGCAATCTTAGA-A-GATATG
1 ATGAT-TGCAATCTTAGATATGATATG
71377971 ATTTTGTAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
35 20 0.36
36 20 0.36
37 15 0.27
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATTGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:71377913 original size:14 final size:15
Alignment explanation
Indices: 71377894--71377949 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
71377884 TCTTAGATAT
71377894 GATATG-CAATCTTA
1 GATATGACAATCTTA
71377908 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
71377925 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
71377943 GATATGA
1 GATATGA
71377950 TATGCAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:71377970 original size:17 final size:19
Alignment explanation
Indices: 71377874--71377963 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
71377864 ATAATCTTCA
71377874 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71377892 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71377911 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71377928 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71377946 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
71377964 AGATATGATT
Statistics
Matches: 68, Mismatches: 0, Indels: 7
0.91 0.00 0.09
Matches are distributed among these distances:
17 16 0.24
18 21 0.31
19 31 0.46
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:71377989 original size:22 final size:22
Alignment explanation
Indices: 71377874--71377986 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
71377864 ATAATCTTCA
71377874 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
71377892 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
71377911 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
71377928 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
71377946 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
71377968 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
71377987 GATTTAATTT
Statistics
Matches: 85, Mismatches: 2, Indels: 11
0.87 0.02 0.11
Matches are distributed among these distances:
17 16 0.19
18 21 0.25
19 28 0.33
22 8 0.09
23 12 0.14
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:71378286 original size:17 final size:18
Alignment explanation
Indices: 71378255--71378288 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
71378245 TTTCCCTGAT
*
71378255 TTTTTTATTATATTTTAA
1 TTTTTTAATATATTTTAA
71378273 TTTTTTAATA-ATTTTA
1 TTTTTTAATATATTTTA
71378289 GTATCATATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTTAATATATTTTAA
Found at i:71386923 original size:78 final size:78
Alignment explanation
Indices: 71386794--71387082 Score: 418
Period size: 78 Copynumber: 3.7 Consensus size: 78
71386784 AGAAACATAC
** * * *
71386794 TTGGCATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTGACCTTTATTGAAGCA
1 TTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCA
71386859 GATCCAAGATGAT
66 GATCCAAGATGAT
* * * *
71386872 TTGGCATCTCTGTATTAGACGGGGAGTAGATTGAAGACACAGCAGATCTGACCTTCATTGAAGTA
1 TTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCA
71386937 GATCCAAGATGAT
66 GATCCAAGATGAT
* * *
71386950 TTGGTATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAAAT-TAGACCTTCATTGAAGC
1 TTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCT-GACCTTCATTGAAGC
71387014 AGATCCAAGATGAT
65 AGATCCAAGATGAT
* * * *
71387028 TTGGCATCTATGTATTTGAAGGGGAGCAGATCGAAGACATAGCAGATTTGACCTT
1 TTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTT
71387083 AATGTGTTTA
Statistics
Matches: 187, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
77 1 0.01
78 185 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (78 bp):
TTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATTGAAGCA
GATCCAAGATGAT
Found at i:71387182 original size:45 final size:45
Alignment explanation
Indices: 71387099--71387298 Score: 233
Period size: 45 Copynumber: 4.5 Consensus size: 45
71387089 TTTACATCGA
* * * *
71387099 AGCAGATCCAAGATGACAGATTTGTCATCTCTGTATTAGACGGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
* * * *
71387144 AGCAAATCGGAGATAACAAATTTGGCATCTCTATATTAGACAGGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
* * * *
71387189 TGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGAC-GGG
1 AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
* *
71387232 AAGCAGATCAAAGATAACAGATTTGGCGTCTCTGTATTAGACAGGG
1 -AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
* *
71387278 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCGAAGATAACAGAT
71387299 ATCTCATTCC
Statistics
Matches: 131, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
43 3 0.02
44 33 0.25
45 92 0.70
46 3 0.02
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (45 bp):
AGCAGATCGAAGATAACAGATTTGGCATCTCTGTATTAGACAGGG
Found at i:71387220 original size:89 final size:90
Alignment explanation
Indices: 71387099--71387298 Score: 260
Period size: 89 Copynumber: 2.2 Consensus size: 90
71387089 TTTACATCGA
* * * **
71387099 AGCAGATCCAAGAT-GACAGATTTGTCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAA
1 AGCAGATCAAAGATAG-CAGATTTGGCATCTCTGTATTAGACGGGAAGCAAATCAAAGATAACAA
71387163 ATTTGGCATCTCTATATTAGACAGGG
65 ATTTGGCATCTCTATATTAGACAGGG
* ** * * *
71387189 TGCAGATTGAAGA-AGCAGATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCAAAGATAACAGA
1 AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGAAGCAAATCAAAGATAACAAA
* *
71387253 TTTGGCGTCTCTGTATTAGACAGGG
66 TTTGGCATCTCTATATTAGACAGGG
71387278 AGCAGATCAAAGATAGCAGAT
1 AGCAGATCAAAGATAGCAGAT
71387299 ATCTCATTCC
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
89 75 0.81
90 18 0.19
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (90 bp):
AGCAGATCAAAGATAGCAGATTTGGCATCTCTGTATTAGACGGGAAGCAAATCAAAGATAACAAA
TTTGGCATCTCTATATTAGACAGGG
Found at i:71387677 original size:19 final size:19
Alignment explanation
Indices: 71387648--71387737 Score: 116
Period size: 19 Copynumber: 4.9 Consensus size: 19
71387638 ATAATCTTCA
71387648 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
71387666 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
* *
71387685 ATGATA--CATTCTCAGAT
1 ATGATATGCAATCTTAGAT
* *
71387702 ATGAT-TGCAATCTTAAAA
1 ATGATATGCAATCTTAGAT
71387720 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
71387738 AGATATGATT
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
17 14 0.23
18 17 0.28
19 30 0.49
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:71387679 original size:35 final size:36
Alignment explanation
Indices: 71387647--71387744 Score: 105
Period size: 36 Copynumber: 2.8 Consensus size: 36
71387637 TATAATCTTC
71387647 AATGATTGCAATCTTAGATATGATATGCAATCTTAGA
1 AATGATTGCAATCTTAGATATGATATGCAATCTTA-A
* * * *
71387684 TATGA-TACATTCTCAGATATGAT-TGCAATCTTAAA
1 AATGATTGCAATCTTAGATATGATATGCAATCTT-AA
71387719 AATGATATGCAATCTTAGA-A-GATATG
1 AATGAT-TGCAATCTTAGATATGATATG
71387745 ATTTTGTAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
35 17 0.35
36 19 0.39
37 13 0.27
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.35
Consensus pattern (36 bp):
AATGATTGCAATCTTAGATATGATATGCAATCTTAA
Found at i:71388060 original size:17 final size:18
Alignment explanation
Indices: 71388027--71388062 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
71388017 TGTTTCCCTG
*
71388027 ATTTTTTTATTATATTTT
1 ATTTTTTTAATATATTTT
71388045 ATTTTTTTAATA-ATTTT
1 ATTTTTTTAATATATTTT
71388062 A
1 A
71388063 GTATCATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTTTTTAATATATTTT
Found at i:71390432 original size:22 final size:22
Alignment explanation
Indices: 71390403--71390472 Score: 95
Period size: 22 Copynumber: 3.2 Consensus size: 22
71390393 AGCAAAATAA
*
71390403 CACCAAAATACCATCAAAGCAG
1 CACCAAAATACCATCAAAACAG
*
71390425 CACGAAAATACCATCAAAACAG
1 CACCAAAATACCATCAAAACAG
* * *
71390447 CACCAAAATAGCACCCAAACAG
1 CACCAAAATACCATCAAAACAG
71390469 CACC
1 CACC
71390473 CAAACAGCAC
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 42 1.00
ACGTcount: A:0.50, C:0.34, G:0.09, T:0.07
Consensus pattern (22 bp):
CACCAAAATACCATCAAAACAG
Found at i:71390453 original size:11 final size:11
Alignment explanation
Indices: 71390439--71390486 Score: 62
Period size: 11 Copynumber: 4.5 Consensus size: 11
71390429 AAAATACCAT
71390439 CAAAACAGCAC
1 CAAAACAGCAC
*
71390450 CAAAATAGCAC
1 CAAAACAGCAC
*
71390461 CCAAACAGCAC
1 CAAAACAGCAC
*
71390472 CCAAACAGCA-
1 CAAAACAGCAC
71390482 CAAAA
1 CAAAA
71390487 AATAGCATCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
10 4 0.12
11 29 0.88
ACGTcount: A:0.54, C:0.35, G:0.08, T:0.02
Consensus pattern (11 bp):
CAAAACAGCAC
Found at i:71398463 original size:10 final size:9
Alignment explanation
Indices: 71398441--71398542 Score: 66
Period size: 9 Copynumber: 10.4 Consensus size: 9
71398431 GAATCCTCCA
*
71398441 ATTTTTTTT
1 ATTTATTTT
71398450 ATTTATTCTT
1 ATTTATT-TT
71398460 ATTTTTATTTT
1 A--TTTATTTT
*
71398471 ATTTTTTTT
1 ATTTATTTT
71398480 ATTTTATTTT
1 A-TTTATTTT
71398490 ATTT-TTATT
1 ATTTATT-TT
71398499 -TTTATTTT
1 ATTTATTTT
71398507 GATTTTTATTTT
1 -A--TTTATTTT
71398519 CATTTCAATTTT
1 -ATTT--ATTTT
71398531 A-TTATTTT
1 ATTTATTTT
71398539 ATTT
1 ATTT
71398543 TAAAAGACAT
Statistics
Matches: 76, Mismatches: 4, Indels: 26
0.72 0.04 0.25
Matches are distributed among these distances:
8 13 0.17
9 23 0.30
10 16 0.21
11 4 0.05
12 20 0.26
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (9 bp):
ATTTATTTT
Found at i:71398465 original size:19 final size:19
Alignment explanation
Indices: 71398441--71398544 Score: 85
Period size: 19 Copynumber: 5.6 Consensus size: 19
71398431 GAATCCTCCA
71398441 ATTTT-TTTTATTTATTCTT
1 ATTTTATTTTATTT-TTCTT
*
71398460 ATTTTTATTTTATTTTTTTT
1 A-TTTTATTTTATTTTTCTT
*
71398480 ATTTTATTTTATTTTT-AT
1 ATTTTATTTTATTTTTCTT
71398498 -TTTTATTTTGA--TTT-TT
1 ATTTTATTTT-ATTTTTCTT
* * *
71398514 ATTTTCATTTCAATTTTATT
1 ATTTT-ATTTTATTTTTCTT
71398534 ATTTTATTTTA
1 ATTTTATTTTA
71398545 AAAGACATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 16
0.77 0.05 0.17
Matches are distributed among these distances:
16 4 0.06
17 14 0.19
18 6 0.08
19 24 0.33
20 16 0.22
21 8 0.11
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (19 bp):
ATTTTATTTTATTTTTCTT
Found at i:71398467 original size:6 final size:6
Alignment explanation
Indices: 71398441--71398523 Score: 80
Period size: 6 Copynumber: 13.7 Consensus size: 6
71398431 GAATCCTCCA
* * *
71398441 ATTTTT TTTATTT ATTCTT ATTTTT A-TTTT ATTTTT -TTTATT TTATTTT
1 ATTTTT ATT-TTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT-TT AT-TTTT
* *
71398490 ATTTTT ATTTTT ATTTTG ATTTTT ATTTTC ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
71398524 CAATTTTATT
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
5 8 0.12
6 45 0.70
7 9 0.14
8 2 0.03
ACGTcount: A:0.17, C:0.02, G:0.01, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:71398468 original size:12 final size:11
Alignment explanation
Indices: 71398451--71398543 Score: 84
Period size: 12 Copynumber: 8.2 Consensus size: 11
71398441 ATTTTTTTTA
71398451 TTTATTCTTATT
1 TTTATT-TTATT
71398463 TTTATTTTA-T
1 TTTATTTTATT
71398473 TTT-TTTTA-T
1 TTTATTTTATT
71398482 TTTATTTTATT
1 TTTATTTTATT
71398493 TTTATTTTTATT
1 TTTA-TTTTATT
*
71398505 TTGATTTTTATT
1 TTTA-TTTTATT
* *
71398517 TTCATTTCAATTT
1 TTTATTT-TA-TT
71398530 TATTATTTTATT
1 T-TTATTTTATT
71398542 TT
1 TT
71398544 AAAAGACATA
Statistics
Matches: 70, Mismatches: 5, Indels: 13
0.80 0.06 0.15
Matches are distributed among these distances:
9 9 0.13
10 9 0.13
11 12 0.17
12 31 0.44
13 4 0.06
14 5 0.07
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.77
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:71398472 original size:5 final size:5
Alignment explanation
Indices: 71398441--71398544 Score: 92
Period size: 5 Copynumber: 20.2 Consensus size: 5
71398431 GAATCCTCCA
71398441 ATTTT -TTTT A-TTT ATTCTT ATTTTT ATTTT ATTTT -TTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATT-TT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTTT
*
71398490 ATTTTT ATTTTT ATTTT GATTTTT ATTTT CATTTCA ATTTT A--TT ATTTT
1 A-TTTT A-TTTT ATTTT -A-TTTT ATTTT -ATTT-T ATTTT ATTTT ATTTT
71398539 ATTTT A
1 ATTTT A
71398545 AAAGACATAT
Statistics
Matches: 85, Mismatches: 2, Indels: 24
0.77 0.02 0.22
Matches are distributed among these distances:
3 3 0.04
4 12 0.14
5 37 0.44
6 27 0.32
7 6 0.07
ACGTcount: A:0.19, C:0.03, G:0.01, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:71398477 original size:30 final size:31
Alignment explanation
Indices: 71398441--71398543 Score: 111
Period size: 30 Copynumber: 3.2 Consensus size: 31
71398431 GAATCCTCCA
71398441 ATTTTTTTTA-TTTATTCTTATTTTTA-TTTT
1 ATTTTTTTTATTTTATT-TTATTTTTATTTTT
71398471 ATTTTTTTTATTTTATTTTATTTTTATTTTT
1 ATTTTTTTTATTTTATTTTATTTTTATTTTT
* *
71398502 ATTTTGATTTTTATTTTCATTTCAATTTTATTATTTT
1 A-TTT--TTTTTATTTT-ATTTTATTTTTA-T-TTTT
71398539 ATTTT
1 ATTTT
71398544 AAAAGACATA
Statistics
Matches: 63, Mismatches: 2, Indels: 12
0.82 0.03 0.16
Matches are distributed among these distances:
30 19 0.30
31 11 0.17
32 3 0.05
34 11 0.17
35 10 0.16
36 4 0.06
37 5 0.08
ACGTcount: A:0.18, C:0.03, G:0.01, T:0.78
Consensus pattern (31 bp):
ATTTTTTTTATTTTATTTTATTTTTATTTTT
Found at i:71398498 original size:36 final size:35
Alignment explanation
Indices: 71398442--71398518 Score: 111
Period size: 36 Copynumber: 2.2 Consensus size: 35
71398432 AATCCTCCAA
71398442 TTTTTTTTATTTATTCTTATTTTTATTTT-ATTTT
1 TTTTTTTTATTTATTCTTATTTTTATTTTGATTTT
*
71398476 TTTTATTTTATTTTATTTTTATTTTTATTTTGATTTT
1 TTTT-TTTTA-TTTATTCTTATTTTTATTTTGATTTT
*
71398513 TATTTT
1 TTTTTT
71398519 CATTTCAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
34 4 0.11
35 5 0.13
36 21 0.55
37 8 0.21
ACGTcount: A:0.16, C:0.01, G:0.01, T:0.82
Consensus pattern (35 bp):
TTTTTTTTATTTATTCTTATTTTTATTTTGATTTT
Found at i:71402735 original size:13 final size:13
Alignment explanation
Indices: 71402717--71402741 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71402707 AAAACAACAT
71402717 ATAGAATACCCAC
1 ATAGAATACCCAC
71402730 ATAGAATACCCA
1 ATAGAATACCCA
71402742 GAAGAGATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (13 bp):
ATAGAATACCCAC
Found at i:71404119 original size:22 final size:22
Alignment explanation
Indices: 71404057--71404121 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
71404047 TATGCACTAT
*
71404057 TAAACAGAAAGCACTAAAGTGC
1 TAAACAGAAAGCACTAATGTGC
* **
71404079 TATACAGAAAGCAAGAATGTGC
1 TAAACAGAAAGCACTAATGTGC
*
71404101 TAAACAGAGAGCACTAATGTG
1 TAAACAGAAAGCACTAATGTG
71404122 TTAGTAATCG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.46, C:0.15, G:0.22, T:0.17
Consensus pattern (22 bp):
TAAACAGAAAGCACTAATGTGC
Found at i:71404575 original size:41 final size:41
Alignment explanation
Indices: 71404530--71404611 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
71404520 TAGAATTCCG
71404530 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
1 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
71404571 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
1 GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
71404612 ATTTTCTTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (41 bp):
GTATGACGTTAGCAATCAAACTTTAAACCTTGAAATCCCAA
Found at i:71404711 original size:5 final size:5
Alignment explanation
Indices: 71404701--71404773 Score: 139
Period size: 5 Copynumber: 14.8 Consensus size: 5
71404691 TTCTTTGTTT
71404701 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
71404751 TATAA TATAA TATAA TAT-A TATA
1 TATAA TATAA TATAA TATAA TATA
71404774 CTTAACTTTT
Statistics
Matches: 67, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
4 4 0.06
5 63 0.94
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:71406130 original size:13 final size:14
Alignment explanation
Indices: 71406114--71406149 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
71406104 CAATCTCATA
71406114 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
71406127 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
71406140 TCTC-ATTTCA
1 TCTCAATTTCA
71406150 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:71406139 original size:18 final size:19
Alignment explanation
Indices: 71406101--71406141 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
71406091 TGGTTCATGT
71406101 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
71406120 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
71406138 TTTC
1 TTTC
71406142 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:71406331 original size:39 final size:38
Alignment explanation
Indices: 71406264--71406398 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 38
71406254 ACCAATATGG
* * *
71406264 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATATTTGA
1 CACCCAGTGCCTCATCGGCTAG-CCGAAGAAATATTTGA
* * * *
71406303 CACCCAGTGTCTCATCGGCCTAGCCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-CTAGCCGAAGAAATATTTGA
* * * * *
71406341 TACCCAGTACCTCATCGAATCTATCCGAAGAAATATAGTGA
1 CACCCAGTGCCTCATCG--GCTAGCCGAAGAAATAT-TTGA
*
71406382 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
71406399 ACTTGAGGTC
Statistics
Matches: 73, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
38 18 0.25
39 35 0.48
40 4 0.05
41 16 0.22
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
CACCCAGTGCCTCATCGGCTAGCCGAAGAAATATTTGA
Found at i:71406664 original size:18 final size:19
Alignment explanation
Indices: 71406638--71406676 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
71406628 TTTCAATTCA
71406638 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
71406657 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
71406675 AT
1 AT
71406677 CTATATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:71407985 original size:5 final size:5
Alignment explanation
Indices: 71407975--71408014 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
71407965 TTACTTATTT
*
71407975 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA ATA
71408015 ATTTAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 25 0.81
6 2 0.06
7 4 0.13
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Found at i:71407991 original size:12 final size:12
Alignment explanation
Indices: 71407974--71408026 Score: 65
Period size: 12 Copynumber: 4.5 Consensus size: 12
71407964 TTTACTTATT
71407974 TATATAATATAA
1 TATATAATATAA
71407986 TATATAATAT-A
1 TATATAATATAA
*
71407997 -ATATACTATAA
1 TATATAATATAA
*
71408008 TATAATAATTTAA
1 TAT-ATAATATAA
71408021 TATATA
1 TATATA
71408027 TATTTTAACA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
10 8 0.23
11 2 0.06
12 15 0.43
13 10 0.29
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:71411475 original size:35 final size:35
Alignment explanation
Indices: 71411429--71411503 Score: 141
Period size: 35 Copynumber: 2.1 Consensus size: 35
71411419 CCAAATCCGG
*
71411429 CGAGTAAGCTCGTATATTTTATTATTTAATATTTA
1 CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
71411464 CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
1 CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
71411499 CGAGT
1 CGAGT
71411504 CAAATATGGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (35 bp):
CGAGTAAGCTCGTACATTTTATTATTTAATATTTA
Found at i:71411943 original size:29 final size:29
Alignment explanation
Indices: 71411909--71411967 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
71411899 ATATATTGAA
71411909 CTTAAATAAGACAAATTGAAATTTAAAAG
1 CTTAAATAAGACAAATTGAAATTTAAAAG
71411938 CTTAAATAAGACAAATTGAAATTTAAAAG
1 CTTAAATAAGACAAATTGAAATTTAAAAG
71411967 C
1 C
71411968 ATTCTAGGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.27
Consensus pattern (29 bp):
CTTAAATAAGACAAATTGAAATTTAAAAG
Found at i:71412406 original size:21 final size:21
Alignment explanation
Indices: 71412377--71412490 Score: 104
Period size: 21 Copynumber: 5.4 Consensus size: 21
71412367 TTTTACTTTT
* *
71412377 TGTTTAGCTCTTTCGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
71412398 TGTTCAGCTCTTACGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
* ** * *
71412419 AGTTCAAATCTTATGAGTTTC
1 TGTTCAGCTCTTACGAGCTTC
* * *
71412440 TATTCAGTTCTTACGAGCTGC
1 TGTTCAGCTCTTACGAGCTTC
* *
71412461 TATTCAGCTCTTAC-ATGCTTT
1 TGTTCAGCTCTTACGA-GCTTC
71412482 TGTTCAGCT
1 TGTTCAGCT
71412491 TTTGAGCTTT
Statistics
Matches: 74, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
20 1 0.01
21 73 0.99
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.43
Consensus pattern (21 bp):
TGTTCAGCTCTTACGAGCTTC
Found at i:71412759 original size:10 final size:8
Alignment explanation
Indices: 71412736--71412762 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
71412726 TAATGGCACA
71412736 TGATATAT
1 TGATATAT
71412744 TGATATAT
1 TGATATAT
71412752 TGATATAT
1 TGATATAT
71412760 TGA
1 TGA
71412763 AATGGATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (8 bp):
TGATATAT
Found at i:71416869 original size:24 final size:23
Alignment explanation
Indices: 71416835--71416892 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 23
71416825 AGTTGAAAAG
71416835 TAATAAATAAAATAAATAATGATA-A
1 TAAT-AATAAAAT-AAT-ATGATATA
*
71416860 TAATAATAAAATGATATGATATA
1 TAATAATAAAATAATATGATATA
71416883 TATATAATAA
1 TA-ATAATAA
71416893 TATTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.20
23 5 0.17
24 15 0.50
25 4 0.13
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TAATAATAAAATAATATGATATA
Found at i:71417243 original size:49 final size:49
Alignment explanation
Indices: 71417163--71417271 Score: 186
Period size: 49 Copynumber: 2.2 Consensus size: 49
71417153 CTTACTTTGA
71417163 GAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
71417210 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
71417259 GAATGTGATAAGT
1 GAATGTGA-AAGT
71417272 CCCGAAGGGC
Statistics
Matches: 58, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
47 10 0.17
49 44 0.76
50 4 0.07
ACGTcount: A:0.31, C:0.07, G:0.31, T:0.30
Consensus pattern (49 bp):
GAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
Found at i:71417445 original size:37 final size:37
Alignment explanation
Indices: 71417389--71417467 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
71417379 CCGAGCTCTA
* * *
71417389 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
71417426 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
71417463 AAGAC
1 AAGAC
71417468 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:71421173 original size:30 final size:30
Alignment explanation
Indices: 71421139--71421199 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
71421129 TTCCCGAGCC
71421139 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * *
71421169 TAGGGGCAAAATTGTAATTTTGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
71421199 T
1 T
71421200 GAGTTAAGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:71423939 original size:19 final size:19
Alignment explanation
Indices: 71423915--71423992 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
71423905 AATCATATCT
71423915 TCTAAGATTACATATCTTA
1 TCTAAGATTACATATCTTA
**
71423934 TCTAAGA-TATGTAATCTTA
1 TCTAAGATTACAT-ATCTTA
*
71423953 --TAA-AATA-ATATCTTA
1 TCTAAGATTACATATCTTA
*
71423968 --TAAGATTACATATCATA
1 TCTAAGATTACATATCTTA
71423985 TCTAAGAT
1 TCTAAGAT
71423993 CTCTAAGATT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
15 9 0.19
16 5 0.10
17 12 0.25
18 3 0.06
19 19 0.40
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (19 bp):
TCTAAGATTACATATCTTA
Found at i:71423955 original size:51 final size:51
Alignment explanation
Indices: 71423892--71424024 Score: 176
Period size: 51 Copynumber: 2.6 Consensus size: 51
71423882 CAATCAAATC
* * *
71423892 TCTAAGAATATAAAATCATATCTTCTAAGATTACATATCTTATCTAAGATA
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* ** * *
71423943 TGTAATCTTATAAAATAATATCTTATAAGATTACATATCATATCTAAGATC
1 TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
* *
71423994 TCTAAGATTAGAAAATCATATCTTTTAAGAT
1 TCTAAGATTATAAAATCATATCTTATAAGAT
71424025 CATGTTTCCA
Statistics
Matches: 68, Mismatches: 14, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.43, C:0.12, G:0.07, T:0.38
Consensus pattern (51 bp):
TCTAAGATTATAAAATCATATCTTATAAGATTACATATCATATCTAAGATA
Found at i:71444025 original size:41 final size:41
Alignment explanation
Indices: 71443947--71444041 Score: 109
Period size: 41 Copynumber: 2.3 Consensus size: 41
71443937 AGTATGATGC
* **
71443947 AGTCGTATTTGTTGCCTATTACCTCAACTGATATTGTGACG
1 AGTCGTATTTATTGCCTATTACCTCAACCAATATTGTGACG
* * * * *
71443988 AGTCATATTTATTGTCTATTATCTCAACCAATTTTGTGATG
1 AGTCGTATTTATTGCCTATTACCTCAACCAATATTGTGACG
*
71444029 AGTTGTATTTATT
1 AGTCGTATTTATT
71444042 ACCTCTTTTC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (41 bp):
AGTCGTATTTATTGCCTATTACCTCAACCAATATTGTGACG
Found at i:71458427 original size:32 final size:32
Alignment explanation
Indices: 71458369--71458431 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
71458359 ATTAATCCGT
*
71458369 ATGAGTTATCAAATTATATTAATTAATTTATC
1 ATGAGTTATCAAATTATAGTAATTAATTTATC
* *
71458401 ATGAGTTATTAAATTCA-AGTAGTTAATTTAT
1 ATGAGTTATCAAATT-ATAGTAATTAATTTAT
71458432 AAATGTATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 26 0.96
33 1 0.04
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.46
Consensus pattern (32 bp):
ATGAGTTATCAAATTATAGTAATTAATTTATC
Found at i:71458595 original size:16 final size:16
Alignment explanation
Indices: 71458574--71458616 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
71458564 CTAAAATTTA
71458574 AATATTTTATTAAAAT
1 AATATTTTATTAAAAT
*
71458590 AATATTTTAATTAATAT
1 AATATTTT-ATTAAAAT
*
71458607 CAT-TTTTATT
1 AATATTTTATT
71458617 TAATAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.12
16 12 0.50
17 9 0.38
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (16 bp):
AATATTTTATTAAAAT
Found at i:71464123 original size:22 final size:24
Alignment explanation
Indices: 71464085--71464129 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 24
71464075 AATGCAATAT
71464085 TGTTGAAAAATCAAATAA-AAAAG
1 TGTTGAAAAATCAAATAAGAAAAG
71464108 TGTTG-AAAA-CACAATAAGAAAA
1 TGTTGAAAAATCA-AATAAGAAAA
71464130 AAACATAGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 2 0.10
22 9 0.45
23 9 0.45
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (24 bp):
TGTTGAAAAATCAAATAAGAAAAG
Done.