Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 228 of 259
Found at i:71683907 original size:10 final size:9
Alignment explanation
Indices: 71683868--71683916 Score: 55
Period size: 10 Copynumber: 5.3 Consensus size: 9
71683858 ATTTATAAAA
71683868 TTTTATATT
1 TTTTATATT
71683877 TTTTATA-T
1 TTTTATATT
* *
71683885 TTCTATATA
1 TTTTATATT
71683894 TTTTATAATT
1 TTTTAT-ATT
71683904 TTTTACTATT
1 TTTTA-TATT
71683914 TTT
1 TTT
71683917 ATAAAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
8 7 0.21
9 12 0.36
10 13 0.39
11 1 0.03
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (9 bp):
TTTTATATT
Found at i:71683919 original size:28 final size:28
Alignment explanation
Indices: 71683859--71683954 Score: 108
Period size: 28 Copynumber: 3.4 Consensus size: 28
71683849 TTCTTACGGA
71683859 TTTATAAAATTTTAT-ATTTTTTA-TATT
1 TTTAT-AAATTTTATAATTTTTTACTATT
* *
71683886 TCTATATATTTTATAATTTTTTACTATT
1 TTTATAAATTTTATAATTTTTTACTATT
* *
71683914 TTTATAAAATTTA-ATACTTTTTACTATT
1 TTTATAAATTTTATA-ATTTTTTACTATT
71683942 TTTAATAAATTTT
1 TTT-ATAAATTTT
71683955 TAACATTTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.14
27 13 0.22
28 29 0.50
29 8 0.14
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTATAAATTTTATAATTTTTTACTATT
Found at i:71683963 original size:28 final size:29
Alignment explanation
Indices: 71683904--71683985 Score: 89
Period size: 28 Copynumber: 2.9 Consensus size: 29
71683894 TTTTATAATT
*
71683904 TTTTACTATTTTT-ATAAAATTTAATACT
1 TTTTACTATTTTTAATAAAATTTAATACA
* *
71683932 TTTTACTATTTTTAATAAATTTTTA-ACA
1 TTTTACTATTTTTAATAAAATTTAATACA
* * *
71683960 TTTTAAT-TTTTTATTAAAATTCAATA
1 TTTTACTATTTTTAATAAAATTTAATA
71683986 ATATTTATAG
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
27 13 0.30
28 22 0.50
29 9 0.20
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (29 bp):
TTTTACTATTTTTAATAAAATTTAATACA
Found at i:71683978 original size:56 final size:55
Alignment explanation
Indices: 71683859--71683994 Score: 141
Period size: 56 Copynumber: 2.5 Consensus size: 55
71683849 TTCTTACGGA
* * * ** *
71683859 TTTATAAAATTTTATATTTTTTATATTTCTATATATTTTATAATTTTTTACTATT
1 TTTATAAAATTTAATACTTTTTATATTTCTATAAATTTTATAACATTTTAATATT
*
71683914 TTTATAAAATTTAATACTTTTTACTATTTTTAATAAATTTT-TAACATTTTAAT-TT
1 TTTATAAAATTTAATACTTTTTA-TATTTCT-ATAAATTTTATAACATTTTAATATT
* * *
71683969 TTTATTAAAATTCAATAATATTTATA
1 TTTA-TAAAATTTAATACTTTTTATA
71683995 GCTTTTATTT
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
55 29 0.43
56 31 0.46
57 8 0.12
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (55 bp):
TTTATAAAATTTAATACTTTTTATATTTCTATAAATTTTATAACATTTTAATATT
Found at i:71684931 original size:45 final size:45
Alignment explanation
Indices: 71684865--71684955 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
71684855 TTTTGGGAAA
71684865 AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
1 AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
* * *
71684910 AATGTTTTCCTGATTTTCCAGTGTTTGTTTGACTGAAAAGGTTTT
1 AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
71684955 A
1 A
71684956 CAAATGGAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.24, C:0.11, G:0.18, T:0.47
Consensus pattern (45 bp):
AATGTTTTCCTAATTTACCAGTGTTTGTTTGACTAAAAAGGTTTT
Found at i:71688911 original size:23 final size:22
Alignment explanation
Indices: 71688850--71688920 Score: 56
Period size: 23 Copynumber: 3.1 Consensus size: 22
71688840 TGATCATAAT
*
71688850 TTAAATATATAAAACATAAATTTA
1 TTAAATA-ATAAAA-ATAAATTAA
*
71688874 TT-AAT-ATATATAATAAATTCAA
1 TTAAATAATA-AAAATAAATT-AA
*
71688896 TTAAATAATAAAAATATAATAAA
1 TTAAATAATAAAAATA-AATTAA
71688919 TT
1 TT
71688921 TTTAAATGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 11
0.72 0.08 0.21
Matches are distributed among these distances:
21 10 0.26
22 5 0.13
23 15 0.39
24 8 0.21
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (22 bp):
TTAAATAATAAAAATAAATTAA
Found at i:71689047 original size:21 final size:21
Alignment explanation
Indices: 71689020--71689067 Score: 80
Period size: 20 Copynumber: 2.3 Consensus size: 21
71689010 TATCTAAACC
*
71689020 CAAAAAAAATAAATTA-TTTT
1 CAAAAAAAATAAATCATTTTT
71689040 CAAAAAAAATAAATCATTTTT
1 CAAAAAAAATAAATCATTTTT
71689061 CAAAAAA
1 CAAAAAA
71689068 TATTTTATTG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 15 0.58
21 11 0.42
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.29
Consensus pattern (21 bp):
CAAAAAAAATAAATCATTTTT
Found at i:71690250 original size:19 final size:19
Alignment explanation
Indices: 71690226--71690263 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
71690216 AACCTGGGGT
71690226 AGGAAAAGAAAATATGATG
1 AGGAAAAGAAAATATGATG
71690245 AGGAAAAGAAAATATGATG
1 AGGAAAAGAAAATATGATG
71690264 TAATTGGTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.26, T:0.16
Consensus pattern (19 bp):
AGGAAAAGAAAATATGATG
Found at i:71693456 original size:27 final size:28
Alignment explanation
Indices: 71693409--71693461 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
71693399 TAGAAAAAAA
71693409 TTAATTTTTATATATTCTTT-AGAAATT
1 TTAATTTTTATATATTCTTTAAGAAATT
*
71693436 TTAATTTTT-TATAATTTTTTAAGAAA
1 TTAATTTTTATAT-ATTCTTTAAGAAA
71693462 ATATAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 3 0.13
27 15 0.65
28 5 0.22
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (28 bp):
TTAATTTTTATATATTCTTTAAGAAATT
Found at i:71693472 original size:28 final size:27
Alignment explanation
Indices: 71693396--71693481 Score: 75
Period size: 28 Copynumber: 3.1 Consensus size: 27
71693386 AAAATTATTA
* *
71693396 TTTTAGAAAAAAATTAATTTTTATATATT
1 TTTTAG-AAAATATAAATTTTTATA-ATT
* * * *
71693425 CTTTAGAAATTTTAATTTTTTATAATT
1 TTTTAGAAAATATAAATTTTTATAATT
*
71693452 TTTTAAGAAAATATAAA-TTTTAAAATT
1 TTTT-AGAAAATATAAATTTTTATAATT
71693479 TTT
1 TTT
71693482 AAAATATTTT
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
27 18 0.40
28 22 0.49
29 5 0.11
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.53
Consensus pattern (27 bp):
TTTTAGAAAATATAAATTTTTATAATT
Found at i:71693519 original size:17 final size:17
Alignment explanation
Indices: 71693475--71693519 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
71693465 TAAATTTTAA
71693475 AATTTTTAAAATATTTT
1 AATTTTTAAAATATTTT
* **
71693492 AAATTAAAAAATATTTT
1 AATTTTTAAAATATTTT
71693509 AATTTTTAAAA
1 AATTTTTAAAA
71693520 ATTATTATTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTTTTAAAATATTTT
Found at i:71693619 original size:18 final size:18
Alignment explanation
Indices: 71693598--71693632 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
71693588 AGAAAATATA
*
71693598 AATTTTAAAAATATTTTG
1 AATTTAAAAAATATTTTG
71693616 AATTTAAAAAATATTTT
1 AATTTAAAAAATATTTT
71693633 AATATTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
AATTTAAAAAATATTTTG
Found at i:71701271 original size:17 final size:18
Alignment explanation
Indices: 71701251--71701287 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
71701241 TAAAGTGTTC
71701251 TAATTACG-TCTTTAAAT
1 TAATTACGTTCTTTAAAT
*
71701268 TAATTACGTTTTTTAAAT
1 TAATTACGTTCTTTAAAT
71701286 TA
1 TA
71701288 TCAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.51
Consensus pattern (18 bp):
TAATTACGTTCTTTAAAT
Found at i:71706931 original size:23 final size:24
Alignment explanation
Indices: 71706887--71706934 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
71706877 TATGCCTTTG
71706887 CTGTTTTCGCTTCTTTTCTTCTGTT
1 CTGTTTTCGC-TCTTTTCTTCTGTT
*
71706912 CTGTTTTCGC-CTTTTGTTCTGTT
1 CTGTTTTCGCTCTTTTCTTCTGTT
71706935 GTCTTGTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 12 0.55
25 10 0.45
ACGTcount: A:0.00, C:0.23, G:0.15, T:0.62
Consensus pattern (24 bp):
CTGTTTTCGCTCTTTTCTTCTGTT
Found at i:71709076 original size:2 final size:2
Alignment explanation
Indices: 71709069--71709094 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
71709059 CTCAAACATC
71709069 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
71709095 GCACACCGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:71712524 original size:23 final size:25
Alignment explanation
Indices: 71712494--71712544 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
71712484 AAGTGATTAA
71712494 ATAATAA-TCCA-AACAAATTAAAT
1 ATAATAATTCCACAACAAATTAAAT
* *
71712517 ATAATAATTTCACAACAATTTAAAT
1 ATAATAATTCCACAACAAATTAAAT
71712542 ATA
1 ATA
71712545 CCTAATAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 7 0.29
24 3 0.12
25 14 0.58
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (25 bp):
ATAATAATTCCACAACAAATTAAAT
Found at i:71713997 original size:20 final size:20
Alignment explanation
Indices: 71713974--71714011 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
71713964 AATTCAATTA
* *
71713974 TTTCTTTAAAATTTCAAAGT
1 TTTCTTAAAAAATTCAAAGT
71713994 TTTCTTAAAAAATTCAAA
1 TTTCTTAAAAAATTCAAA
71714012 ATTTCAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.45
Consensus pattern (20 bp):
TTTCTTAAAAAATTCAAAGT
Found at i:71714016 original size:19 final size:20
Alignment explanation
Indices: 71713973--71714016 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
71713963 GAATTCAATT
* *
71713973 ATTTCTTTAAAATTTCAAAG
1 ATTTCTTAAAAAATTCAAAG
*
71713993 TTTTCTTAAAAAATTCAAA-
1 ATTTCTTAAAAAATTCAAAG
71714012 ATTTC
1 ATTTC
71714017 AATAATAGAT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.41, C:0.11, G:0.02, T:0.45
Consensus pattern (20 bp):
ATTTCTTAAAAAATTCAAAG
Found at i:71714831 original size:16 final size:16
Alignment explanation
Indices: 71714776--71714833 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
71714766 GAATTGGGGG
71714776 TAAT-CAATACACCTC
1 TAATCCAATACACCTC
* **
71714791 TAATCC-AT-GAGGTC
1 TAATCCAATACACCTC
71714805 TAATCCCAATACACCTC
1 TAAT-CCAATACACCTC
71714822 TAATCCAATACA
1 TAATCCAATACA
71714834 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
14 7 0.21
15 8 0.24
16 11 0.33
17 7 0.21
ACGTcount: A:0.38, C:0.31, G:0.05, T:0.26
Consensus pattern (16 bp):
TAATCCAATACACCTC
Found at i:71717852 original size:17 final size:19
Alignment explanation
Indices: 71717830--71717864 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
71717820 AAAAAATAGT
71717830 AACAAAA-TTA-ACAATAA
1 AACAAAAGTTATACAATAA
71717847 AACAAAAGTTATACAATA
1 AACAAAAGTTATACAATA
71717865 TTCAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (19 bp):
AACAAAAGTTATACAATAA
Found at i:71719177 original size:55 final size:49
Alignment explanation
Indices: 71719109--71719215 Score: 124
Period size: 50 Copynumber: 2.1 Consensus size: 49
71719099 AATAAATTAA
* *
71719109 AAACAAATTAAAAAAACTTCAACTTCCTAAAAATAATTGAAATAAAAATATATTT
1 AAACAAACT-AAAAAA-TCCAACTTCC--AAAA-AATTGAAATAAAAATA-ATTT
* *
71719164 AAACAAACTAAAAAATCCAACTTCCAAAAAATTTAAATAAAACTAATTT
1 AAACAAACTAAAAAATCCAACTTCCAAAAAATTGAAATAAAAATAATTT
71719213 AAA
1 AAA
71719216 AATAAATACT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
49 7 0.15
50 14 0.29
51 4 0.08
53 9 0.19
54 6 0.12
55 8 0.17
ACGTcount: A:0.60, C:0.13, G:0.01, T:0.26
Consensus pattern (49 bp):
AAACAAACTAAAAAATCCAACTTCCAAAAAATTGAAATAAAAATAATTT
Found at i:71727849 original size:5 final size:5
Alignment explanation
Indices: 71727839--71727863 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
71727829 AATCTTATTC
71727839 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
71727864 GAAGTGTAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:71729216 original size:555 final size:554
Alignment explanation
Indices: 71728107--71729219 Score: 1884
Period size: 555 Copynumber: 2.0 Consensus size: 554
71728097 GTTATAAGAA
71728107 GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
1 GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
*
71728172 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTCTCATGAAACAT
66 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
*
71728237 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATATTGTACTGATTTGAATGTCTT
131 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
* * *
71728302 CATTGAATTCACAAAAGAGTCATTTCAATTGGATAACTTCTTTTCAAGCCTCAGTAATTGCATGT
196 CACTGAATTCACAAAAGAGTCATTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATTGCATGT
* *
71728367 ACTCAGCTTCAGTGGTAGATAAAGCGACTGTAATTTGCAAAGTGGCTTTCCAACTAATTGCACAA
261 ACTCAGCTTCAGTGGTAGACAAAGCGACTGTAATTTGCAAAGTGACTTTCCAACTAATTGCACAA
** *
71728432 CCTTTGATTGTAAAGACATAACCTGTAAGAGATCTTCTTCTATCAAGGTCTCTAGCAAAATCAGC
326 CCTCCGATTGTAAAGACATAACCTGTAAGAGATCTTCTTCTATCAAGGTCTCCAGCAAAATCAGC
* * *
71728497 ATCAACATACCCAATGACTCCATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAGCACCTC
391 ATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAACACATC
* * * *
71728562 TTAAGTATCTTAAAATCCATTGAGCTGCTTTCCAGTGTTCTTTACCAGCATTCGCCACGTATCTG
456 GTAAGTATCTTAAAATCCATTAAACTGCTTTCCAGTATTCTTTACCAGCATTCGCCACGTATCTG
* *
71728627 CTAACTGCACTGACTGCATATGATAAATCTGGAC
521 CTAACTACACTAACTGCATATGATAAATCTGGAC
* * *
71728661 GTGACTTAGACATCATATCTGTAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
1 GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
71728726 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
66 CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
71728791 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
131 TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
* *
71728856 CACTGAGTTCACAAAAGAGTCCTTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATTGCCATG
196 CACTGAATTCACAAAAGAGTCATTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATTG-CATG
*
71728921 TACTCAGCTTCAGTGGTAGACAAAGCGACTGTAATTTGCAAAGTGACTTTCCAACTGATTGCACA
260 TACTCAGCTTCAGTGGTAGACAAAGCGACTGTAATTTGCAAAGTGACTTTCCAACTAATTGCACA
* *
71728986 ACCTCCGATTGTAAAGACATAACCTGTGAGTGATCTTCTTCTATCAAGGTCTCCAGCAAAATCAG
325 ACCTCCGATTGTAAAGACATAACCTGTAAGAGATCTTCTTCTATCAAGGTCTCCAGCAAAATCAG
* *
71729051 CATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTGTAAGCAGACATCAGTAACACAT
390 CATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAACACAT
* ** * * *
71729116 CGTAAGTATCTTAAAATCCATTAAATTGCTTTTTAGTATTCTTTACCGGGATTCGCCATGTATCT
455 CGTAAGTATCTTAAAATCCATTAAACTGCTTTCCAGTATTCTTTACCAGCATTCGCCACGTATCT
* *
71729181 TCTAACTATACTAACTGCATATGATAAATCTGGAC
520 GCTAACTACACTAACTGCATATGATAAATCTGGAC
71729216 GTGA
1 GTGA
71729220 ACAAACCATA
Statistics
Matches: 521, Mismatches: 37, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
554 245 0.47
555 276 0.53
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (554 bp):
GTGACTTAGACATAATATATGCAGGATTTTCATGAGTACTAATTTTGCTCACAACAATATCACCA
CGAGCAATAATATCACGAACAAAATGATACCGAACATCAATGTGTTTTGTTCTATCATGAAACAT
TTGATCTTTTGTAAGGAATATTGCACTCTAACTGTCACAAAATACTGTACTGATTTGAATGTCTT
CACTGAATTCACAAAAGAGTCATTTCAATCGGATAACTTCTTTACAAGCCTCAGTAATTGCATGT
ACTCAGCTTCAGTGGTAGACAAAGCGACTGTAATTTGCAAAGTGACTTTCCAACTAATTGCACAA
CCTCCGATTGTAAAGACATAACCTGTAAGAGATCTTCTTCTATCAAGGTCTCCAGCAAAATCAGC
ATCAACATACCCAATGACTCAATCTCTAGTTCTTCCAAACTATAAACAGACATCAGTAACACATC
GTAAGTATCTTAAAATCCATTAAACTGCTTTCCAGTATTCTTTACCAGCATTCGCCACGTATCTG
CTAACTACACTAACTGCATATGATAAATCTGGAC
Found at i:71733495 original size:25 final size:25
Alignment explanation
Indices: 71733430--71733484 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
71733420 GAGCATTAAA
71733430 CAACTCACTAACAAAAAAAGATGTT
1 CAACTCACTAACAAAAAAAGATGTT
71733455 CAACTCACTAACAAAAAAAGATGTT
1 CAACTCACTAACAAAAAAAGATGTT
71733480 CAACT
1 CAACT
71733485 TTTCGTAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.51, C:0.22, G:0.07, T:0.20
Consensus pattern (25 bp):
CAACTCACTAACAAAAAAAGATGTT
Found at i:71734531 original size:32 final size:32
Alignment explanation
Indices: 71734495--71734599 Score: 99
Period size: 37 Copynumber: 3.2 Consensus size: 32
71734485 TAATATTTTT
71734495 AATATAATTATTTTTATATTAATTTATATTAAA
1 AATATAATTATTTTTATATTAATTTATATT-AA
*
71734528 ATATGATTAAGTTATTTTT-TATTAAATTATATTTTAA
1 A-AT-A-TAA-TTATTTTTATATT-AATT-TATATTAA
* *
71734565 AAT-TAAATA-TTTTATATTAAATTATATTAA
1 AATATAATTATTTTTATATTAATTTATATTAA
71734595 AATAT
1 AATAT
71734600 TTTAAATATT
Statistics
Matches: 60, Mismatches: 4, Indels: 18
0.73 0.05 0.22
Matches are distributed among these distances:
30 10 0.17
31 8 0.13
32 6 0.10
33 4 0.07
34 2 0.03
35 1 0.02
36 9 0.15
37 15 0.25
38 5 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (32 bp):
AATATAATTATTTTTATATTAATTTATATTAA
Found at i:71734585 original size:14 final size:15
Alignment explanation
Indices: 71734556--71734597 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
71734546 TTATTAAATT
71734556 ATATTTTAAAATTAA
1 ATATTTTAAAATTAA
*
71734571 ATATTTT-ATATTAA
1 ATATTTTAAAATTAA
*
71734585 ATTATATTAAAAT
1 A-TATTTTAAAAT
71734598 ATTTTAAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 7 0.32
15 12 0.55
16 3 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATATTTTAAAATTAA
Found at i:71736282 original size:30 final size:30
Alignment explanation
Indices: 71736248--71736310 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
71736238 ATTTATTTTA
71736248 TTGTTAATTTTCATATTATTTTA-AAGGCAT
1 TTGTTAATTTTCATATTATTTTAGAA-GCAT
**
71736278 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCATATTATTTTAGAAGCAT
71736308 TTG
1 TTG
71736311 CTTTTTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 28 0.93
31 2 0.07
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTCATATTATTTTAGAAGCAT
Found at i:71739153 original size:21 final size:21
Alignment explanation
Indices: 71739108--71739153 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
71739098 AAATTTTCCT
*
71739108 TTTCTTCTCTTTCCCTTTTTC
1 TTTCTTCTCTTTCCCTCTTTC
*
71739129 TTTCTT-TCTTTCCCTGCTTTG
1 TTTCTTCTCTTTCCCT-CTTTC
71739150 TTTC
1 TTTC
71739154 GTTTTCATTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.00, C:0.30, G:0.04, T:0.65
Consensus pattern (21 bp):
TTTCTTCTCTTTCCCTCTTTC
Found at i:71741493 original size:30 final size:32
Alignment explanation
Indices: 71741433--71741496 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
71741423 CACTTATTTT
71741433 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
71741466 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
71741497 ACATATCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:71741756 original size:41 final size:41
Alignment explanation
Indices: 71741711--71741907 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
71741701 ACCGGCTCTT
*
71741711 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
71741752 AGCCTGCTAAACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
71741793 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
71741834 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
71741875 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
71741908 TAACGATAAA
Statistics
Matches: 146, Mismatches: 6, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 137 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:71743459 original size:13 final size:13
Alignment explanation
Indices: 71743441--71743465 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71743431 CCATCGAATG
71743441 CACACAAAATAAA
1 CACACAAAATAAA
71743454 CACACAAAATAA
1 CACACAAAATAA
71743466 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:71743706 original size:21 final size:21
Alignment explanation
Indices: 71743664--71743713 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
71743654 GATTATTTGA
*
71743664 ATTGAATTGAATATTGATTAT
1 ATTGAATTGAATATTGAATAT
*
71743685 ATTGAATTG-ATTTATGAATAT
1 ATTGAATTGAATAT-TGAATAT
71743706 ATGTGAAT
1 AT-TGAAT
71743714 GTTTGAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.12
21 17 0.68
22 5 0.20
ACGTcount: A:0.38, C:0.00, G:0.16, T:0.46
Consensus pattern (21 bp):
ATTGAATTGAATATTGAATAT
Found at i:71743740 original size:30 final size:28
Alignment explanation
Indices: 71743659--71743740 Score: 73
Period size: 30 Copynumber: 2.9 Consensus size: 28
71743649 GAGATGATTA
*
71743659 TTTGAATTGAATTGAATATTGAT-T-AT
1 TTTGAATTGAAATGAATATTGATGTGAT
* *
71743685 ATTGAATTGATTTATGAATA-T-ATGTGAAT
1 TTTGAATTGA--AATGAATATTGATGTG-AT
71743714 GTTTGAATTGAAATGAATATTGATGTG
1 -TTTGAATTGAAATGAATATTGATGTG
71743741 GAAATTGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
26 11 0.26
27 2 0.05
28 13 0.30
29 3 0.07
30 14 0.33
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (28 bp):
TTTGAATTGAAATGAATATTGATGTGAT
Found at i:71744112 original size:44 final size:45
Alignment explanation
Indices: 71744021--71744130 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 45
71744011 CGATTACTGT
* * *
71744021 TACTGTTACCGTTACTATTACCGATTCTGCACTTTGTGTGTCAAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCAAA
* * **
71744066 TACTGTTACTGTTACCGTTATC-ATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCAAA
71744110 TACTGTTACTGTTACTGTTAC
1 TACTGTTACTGTTACTGTTAC
71744131 TGTTCCGGAT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
44 38 0.68
45 18 0.32
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.43
Consensus pattern (45 bp):
TACTGTTACTGTTACTGTTACCGATTCAGCACTTTGTGTGTCAAA
Found at i:71744121 original size:6 final size:6
Alignment explanation
Indices: 71744110--71744134 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
71744100 GTGTGTTGAA
71744110 TACTGT TACTGT TACTGT TACTGT T
1 TACTGT TACTGT TACTGT TACTGT T
71744135 CCGGATTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.52
Consensus pattern (6 bp):
TACTGT
Found at i:71744748 original size:16 final size:15
Alignment explanation
Indices: 71744722--71744756 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
71744712 TGATGTGAAT
71744722 AATATAAAATATTAA
1 AATATAAAATATTAA
*
71744737 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
71744753 AATA
1 AATA
71744757 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:71744928 original size:20 final size:20
Alignment explanation
Indices: 71744871--71744930 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
71744861 AATACTACAT
71744871 AAATATGTACA-AATATAAA
1 AAATATGTACATAATATAAA
** *
71744890 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
71744913 AAATATGTACATAATATA
1 AAATATGTACATAATATA
71744931 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 1 0.03
23 15 0.48
ACGTcount: A:0.58, C:0.05, G:0.07, T:0.30
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:71744939 original size:25 final size:25
Alignment explanation
Indices: 71744884--71745108 Score: 108
Period size: 25 Copynumber: 9.2 Consensus size: 25
71744874 TATGTACAAA
* * *
71744884 TATAAAAAATAAATACGTGATA-A-
1 TATAAAAAATATATACATAATATAG
* *
71744907 TATTAAAAATATGTACATAATATAG
1 TATAAAAAATATATACATAATATAG
* *
71744932 TGTAAAAAAATACATACATAATATA-
1 TAT-AAAAAATATATACATAATATAG
* * *
71744957 -AT-TAAAATATATACATAAGATAACA
1 TATAAAAAATATATACATAATAT-A-G
* * *
71744982 TGTAAAATATATATATATAATATAG
1 TATAAAAAATATATACATAATATAG
* * *
71745007 TATTAAAGATATATACATAAAATAG
1 TATAAAAAATATATACATAATATAG
* * * *
71745032 TATAATATATATCTACGTAATATAG
1 TATAAAAAATATATACATAATATAG
* ** * *
71745057 AAT-TTAGA-ATATACCTAATATA-
1 TATAAAAAATATATACATAATATAG
* *
71745079 T-TAAAAGAATATATATATAATATAA
1 TATAAAA-AATATATACATAATATAG
71745104 TATAA
1 TATAA
71745109 TATTAAGAAA
Statistics
Matches: 148, Mismatches: 41, Indels: 23
0.70 0.19 0.11
Matches are distributed among these distances:
21 1 0.01
22 17 0.11
23 31 0.21
24 17 0.11
25 44 0.30
26 23 0.16
27 15 0.10
ACGTcount: A:0.55, C:0.05, G:0.06, T:0.34
Consensus pattern (25 bp):
TATAAAAAATATATACATAATATAG
Found at i:71744949 original size:26 final size:25
Alignment explanation
Indices: 71744911--71744973 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
71744901 TGATAATATT
** *
71744911 AAAAATATGTACATAATATAGTGTAA
1 AAAAATACATACATAATATAAT-TAA
71744937 AAAAATACATACATAATATAATTAA
1 AAAAATACATACATAATATAATTAA
*
71744962 AATATATACATA
1 AA-AAATACATA
71744974 AGATAACATG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
25 5 0.16
26 27 0.84
ACGTcount: A:0.59, C:0.06, G:0.05, T:0.30
Consensus pattern (25 bp):
AAAAATACATACATAATATAATTAA
Found at i:71744963 original size:22 final size:22
Alignment explanation
Indices: 71744938--71744979 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
71744928 ATAGTGTAAA
*
71744938 AAAATACATACATAATATAATT
1 AAAATACATACATAAGATAATT
*
71744960 AAAATATATACATAAGATAA
1 AAAATACATACATAAGATAA
71744980 CATGTAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.62, C:0.07, G:0.02, T:0.29
Consensus pattern (22 bp):
AAAATACATACATAAGATAATT
Found at i:71744993 original size:27 final size:25
Alignment explanation
Indices: 71744945--71745026 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 25
71744935 AAAAAAATAC
*
71744945 ATACATAATAT-A-ATTAAA-ATAT
1 ATACATAAGATAACATTAAAGATAT
*
71744967 ATACATAAGATAACATGTAAAATATAT
1 ATACATAAGATAACAT-T-AAAGATAT
* * **
71744994 ATATATAATATAGTATTAAAGATAT
1 ATACATAAGATAACATTAAAGATAT
71745019 ATACATAA
1 ATACATAA
71745027 AATAGTATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
22 10 0.21
23 1 0.02
24 2 0.04
25 15 0.31
26 4 0.08
27 16 0.33
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (25 bp):
ATACATAAGATAACATTAAAGATAT
Found at i:71745623 original size:30 final size:30
Alignment explanation
Indices: 71745589--71745704 Score: 205
Period size: 30 Copynumber: 3.9 Consensus size: 30
71745579 GTGGTGGTGG
* *
71745589 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
71745619 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
71745649 AGTGTGGCTAGTGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
71745679 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
71745705 CAAAGGCTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 82 1.00
ACGTcount: A:0.18, C:0.06, G:0.49, T:0.27
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:71745632 original size:18 final size:18
Alignment explanation
Indices: 71745609--71745664 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 18
71745599 GTGGAGTAGG
71745609 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
71745627 TAGT-G-G--AGT-TGG-
1 TAGTGGAGCAAGTGTGGC
*
71745639 TGGTGGAGCAAGTGTGGC
1 TAGTGGAGCAAGTGTGGC
71745657 TAGTGGAG
1 TAGTGGAG
71745665 TTGGTGGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 3 0.10
13 4 0.13
14 4 0.13
16 4 0.13
17 4 0.13
18 11 0.37
ACGTcount: A:0.20, C:0.07, G:0.48, T:0.25
Consensus pattern (18 bp):
TAGTGGAGCAAGTGTGGC
Found at i:71746530 original size:91 final size:89
Alignment explanation
Indices: 71746412--71746579 Score: 246
Period size: 89 Copynumber: 1.9 Consensus size: 89
71746402 GAGTTGATTT
* * * **
71746412 TTGAAAAGCAGAAATTGAAAACGCCTCAGCGTGTGACCCGTGGCTTAACTCACCTCTTGCAATAT
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCACAATAT
71746477 GAGTTGATTCTTTTGAAATGTAGAAA
64 GAGTTGATTCTTTTGAAATGTAGAAA
* *
71746503 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATGTGA
1 TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGA
*
71746568 GTTGATTTTTTT
66 GTTGATTCTTTT
71746580 TTTATAAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
89 37 0.54
91 32 0.46
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (89 bp):
TTGAAAAGCAGAAATTGAAAACACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAATATGA
GTTGATTCTTTTGAAATGTAGAAA
Found at i:71746798 original size:75 final size:74
Alignment explanation
Indices: 71746671--71747060 Score: 517
Period size: 73 Copynumber: 5.3 Consensus size: 74
71746661 AACACAGAAA
* * * *
71746671 TTGAAGAACAAAAATGGAAAACACCTCAAC--GTCTTGAGGTTTAACTCACCTCTCGCAATATGA
1 TTGAA-AACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
*
71746734 GCTGATTTTT
65 GTTGATTTTT
*
71746744 TTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
71746809 GTTGA--TTT
65 GTTGATTTTT
* ** *
71746817 TTGACAAACAAAAATTGAAATTACCTC-A-GCATCTTGAGGTTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
* *
71746880 GCTAATTTTT
65 GTTGATTTTT
71746890 TTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAA-ACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
71746955 GTTGA--TTT
65 GTTGATTTTT
* * * *
71746963 TTGACAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGA
1 TTGA-AAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGA
71747028 GTTGATTTTT
65 GTTGATTTTT
*
71747038 TTGAAAAACAGAAATTGAAAATA
1 TTG-AAAACAAAAATTGAAAATA
71747061 GAAATGGAAA
Statistics
Matches: 279, Mismatches: 25, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
71 35 0.13
72 4 0.01
73 142 0.51
74 5 0.02
75 92 0.33
76 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (74 bp):
TTGAAAACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTT
Found at i:71746941 original size:146 final size:146
Alignment explanation
Indices: 71746677--71747060 Score: 633
Period size: 146 Copynumber: 2.6 Consensus size: 146
71746667 GAAATTGAAG
* ** * *
71746677 AACAAAAATGGAAAACACCTCAACGTCTTGAGGTTTAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
71746742 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
71746807 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
* *
71746823 AACAAAAATTGAAATTACCTCAGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
*
71746888 TTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
71746953 GAGTTGATTTTTGACA
131 GAGTTGATTTTTGACA
* * * *
71746969 AACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGAT
1 AACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGAT
*
71747034 TTTTTTGAAAAACAGAAATTGAAAATA
64 TTTTTTGAAAGACAGAAATTGAAAATA
71747061 GAAATGGAAA
Statistics
Matches: 220, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
146 162 0.74
148 58 0.26
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (146 bp):
AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTGACA
Found at i:71747114 original size:86 final size:87
Alignment explanation
Indices: 71746985--71747144 Score: 232
Period size: 86 Copynumber: 1.8 Consensus size: 87
71746975 AATTGAAATT
*
71746985 ACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTTGAAAAACAGA
1 ACCTCAGCG-GTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGA
*
71747050 AATTGAAAATAGAAATGGAAAAC
65 AATTAAAAATAGAAATGGAAAAC
* * * * * *
71747073 ACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGGTTTTTTTGAAACACATAA
1 ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAA
71747137 ATTAAAAA
66 ATTAAAAA
71747145 AAAGAAATTA
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
86 56 0.88
88 8 0.12
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (87 bp):
ACCTCAGCGGTCCTGAGGCTCAACTCACCTATCGCAATATGAGCTGATTTTTTTGAAAAACAGAA
ATTAAAAATAGAAATGGAAAAC
Found at i:71747349 original size:76 final size:75
Alignment explanation
Indices: 71747153--71747525 Score: 436
Period size: 75 Copynumber: 5.0 Consensus size: 75
71747143 AAAAAGAAAT
* ** *
71747153 TAAAAACAGAATTTGAAAGGACCTC-GACGTGTGGCCTGAGACTCAACTCACCTCTCGCAATATG
1 TAAAAACAGAAATTGAAAATACCTCAG-CGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATG
*
71747217 AATTGATTCTTTTG
63 AGTTGATT-TTTTG
* ** *
71747231 -AAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTCAACTCACCTCTCACAATATGAGT
1 TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
71747295 TGATTTTTTG
66 TGATTTTTTG
* * * *
71747305 ATAAAAATAGAATTTGAAAATATCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAG
1 -TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
71747370 TTGA-TTTTTG
65 TTGATTTTTTG
* * * * * *
71747380 -ACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGC
1 TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
71747442 TGATTTTTT-
66 TGATTTTTTG
* * * *
71747451 TGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAG
1 T-AAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
71747516 TTGATTTTTT
65 TTGATTTTTT
71747526 TTGAAACATA
Statistics
Matches: 252, Mismatches: 35, Indels: 19
0.82 0.11 0.06
Matches are distributed among these distances:
71 34 0.13
72 5 0.02
73 43 0.17
74 5 0.02
75 80 0.32
76 59 0.23
77 25 0.10
78 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (75 bp):
TAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTTTG
Found at i:71747422 original size:560 final size:561
Alignment explanation
Indices: 71746713--71747976 Score: 1594
Period size: 560 Copynumber: 2.2 Consensus size: 561
71746703 CTTGAGGTTT
* * * * * *
71746713 AACTCACCTCTCGCAATATGAGCTGATTTTTT--TGAAAGACAGAAATTGAAAATACCTCAACGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAAAAAGAAATTGAAAATATCTCAGCGT
*
71746776 GTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
71746841 CTCAGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAAAAATT
131 CTCAGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAAAAATT
71746906 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTG-AC-
196 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAACA
* * *
71746968 AAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGA
261 AAACAAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGAGATGA
* * * *
71747033 TTT-TTTTGAAAAACAGAAATTG-AAAATAGAAATGGAAAACACCTCAGCGT-CTTGAGGTTCAA
326 TTTAATTTGAAAAACAAAAATTGAAAAATAGAAATGGAAAACACCTCAGCGTCCCTGAGGCTCAA
* * * *
71747095 CTCACCTCTCGCAATATGAGCTGGTTTTTTTGAAACACATAAATTAAAAAAAAGAAATT-AAAAA
391 CTCACCTCTCGCAAAATGAG-TGG-ATTTTTGAAAAACAGAAATT-AAAAAAAGAAATTGAAAAA
* * * * * *
71747159 CAGAATTTGAAAGGACCTCGACGTGTGGCCTGAGACTCAACTCACCTCTCGCAATATGAATTGAT
453 CAGAAATTAAAAAGACCTCG--GCGTGCCCCGAGACTCAACTCACCTCTCGCAATATGAATTGA-
71747224 TCTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTC
515 T-TTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTC
* * *
71747272 AACTCACCTCTCACAATATGAGTTGATTTTTTGAT-AAAAATAGAATTTGAAAATATCTCAGCGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAAAAAGAAATTGAAAATATCTCAGCGT
*
71747336 GTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
* * *
71747401 CTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATT
131 CTCAGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAAAAATT
*
71747466 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTTGAA
196 GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTG-A
* * *
71747531 ACATAAATTAAAAAAACGAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTTACCTCTCG
258 AC----------AAAACAAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTATCG
* ** * *
71747596 CAATATGAGATGATTTGAAAAGCAGAATTTGTAAGGCAAAAATTGAAAAATAGAAATTGAAAATA
313 CAATATGAGATGATTT---------AATTTGAAAAACAAAAATTGAAAAATAGAAATGGAAAACA
*
71747661 CCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAAATGAGTTGATTTTTGAAAAACAGAAAT
369 CCTCAGCGT-CCCTGAGGCTCAACTCACCTCTCGCAAAATGAGTGGATTTTTGAAAAACAGAAAT
** * * *
71747726 TAAAAGTAGAAATTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCT
433 TAAAAAAAGAAATTGAAAAACAGAAATTAAAAAGACCTCGGCGTGCCCCGAGACTCAACTCACCT
* * * **
71747791 CTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
498 CTCGCAATATGAATTGATTTTTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTC
71747855 AACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAGCATAAATTGAAAAAACGGAAATTGAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTT-----G-AT-AA---AAAAAA--GAAATTGAAA
*
71747920 ATATCTCAGCGTGTGACCTGAGGCCCAACTCACCTCTCGCAATATGAGTTGATTTTT
54 ATATCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
71747977 TTGAAAGACA
Statistics
Matches: 604, Mismatches: 54, Indels: 55
0.85 0.08 0.08
Matches are distributed among these distances:
559 30 0.05
560 202 0.33
561 1 0.00
563 6 0.01
565 2 0.00
576 62 0.10
583 73 0.12
584 1 0.00
585 36 0.06
586 25 0.04
587 64 0.11
588 3 0.00
589 31 0.05
591 1 0.00
594 5 0.01
596 23 0.04
598 39 0.06
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (561 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTTGATAAAAAAAAGAAATTGAAAATATCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTAC
CTCAGCATCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTAATTTTTTTGAAAGACAAAAATT
GAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAACA
AAACAAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTATCGCAATATGAGATGA
TTTAATTTGAAAAACAAAAATTGAAAAATAGAAATGGAAAACACCTCAGCGTCCCTGAGGCTCAA
CTCACCTCTCGCAAAATGAGTGGATTTTTGAAAAACAGAAATTAAAAAAAGAAATTGAAAAACAG
AAATTAAAAAGACCTCGGCGTGCCCCGAGACTCAACTCACCTCTCGCAATATGAATTGATTTTTG
AAAAGCAGAAATTGAAAATACCTCAGCGTGTCCCAAGGCTC
Found at i:71747750 original size:14 final size:13
Alignment explanation
Indices: 71747714--71747758 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
71747704 TTGATTTTTG
71747714 AAAAACAGAAATT
1 AAAAACAGAAATT
**
71747727 AAAAGTAGAAATT
1 AAAAACAGAAATT
71747740 GAAAAACAGAAATT
1 -AAAAACAGAAATT
71747754 AAAAA
1 AAAAA
71747759 TACCTCGGCG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:71747773 original size:100 final size:101
Alignment explanation
Indices: 71747542--71747830 Score: 388
Period size: 100 Copynumber: 2.9 Consensus size: 101
71747532 CATAAATTAA
* * * *
71747542 AAAAAC-GAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTTACCTCTCGCAATATGAGA
1 AAAAACAG-AAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
71747606 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* *
71747641 AAAAATAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAAAATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
71747706 GATTTTTGAAAAACAGAAATT-AAAAGTAGAAATTG
66 GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
* * * *
71747741 AAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
71747806 GATTTTTGAAAAGCATAAATTGAAA
66 GATTTTTGAAAAGCAGAAATTGAAA
71747831 TTACCTCAGC
Statistics
Matches: 166, Mismatches: 20, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
99 59 0.36
100 89 0.54
101 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (101 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAGCAGAAATTGAAAAGCAAAAATTG
Found at i:71747836 original size:73 final size:74
Alignment explanation
Indices: 71747738--71747905 Score: 257
Period size: 73 Copynumber: 2.3 Consensus size: 74
71747728 AAAGTAGAAA
* * * * *
71747738 TTGAAAAACAGAAATTAAAAATACCTCGGCGTGCCCCGAGGCTCAGCTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
71747803 GTTGA-TTT
66 GTTGATTTT
* * *
71747811 TTGAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
71747876 GTTGATTTT
66 GTTGATTTT
71747885 TTGAAAAGCATAAATTGAAAA
1 TTGAAAAGCATAAATTGAAAA
71747906 AACGGAAATT
Statistics
Matches: 85, Mismatches: 9, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
73 62 0.73
74 23 0.27
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (74 bp):
TTGAAAAGCATAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:71754974 original size:16 final size:15
Alignment explanation
Indices: 71754948--71754982 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
71754938 TGATGTGAAT
71754948 AATATAAAATATTAA
1 AATATAAAATATTAA
*
71754963 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
71754979 AATA
1 AATA
71754983 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:71755152 original size:20 final size:20
Alignment explanation
Indices: 71755095--71755154 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 20
71755085 AATACTACAT
71755095 AAATATGTACAT-ATATAAA
1 AAATATGTACATAATATAAA
** *
71755114 AAATAAATACGTGATAATATTAA
1 AAATATGTAC---ATAATATAAA
71755137 AAATATGTACATAATATA
1 AAATATGTACATAATATA
71755155 GTGTAAAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 7
0.70 0.14 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 2 0.06
23 14 0.45
ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATGTACATAATATAAA
Found at i:71755163 original size:25 final size:25
Alignment explanation
Indices: 71755135--71755277 Score: 107
Period size: 25 Copynumber: 5.8 Consensus size: 25
71755125 TGATAATATT
*
71755135 AAAAATATGTACATAATATAGTGTA
1 AAAAATATATACATAATATAGTGTA
* *
71755160 AAAAATACATACATAATATAAT-T-
1 AAAAATATATACATAATATAGTGTA
* *
71755183 -AAAATATATACATAAGATAACATGTA
1 AAAAATATATACATAATAT-A-GTGTA
* * * *
71755209 AAATATATATAAATAATATAGTATT
1 AAAAATATATACATAATATAGTGTA
* *
71755234 AAAGATATATACATAAAATA--GTA
1 AAAAATATATACATAATATAGTGTA
* * *
71755257 TAATATATATACGTAATATAG
1 AAAAATATATACATAATATAG
71755278 AATTTAGAAT
Statistics
Matches: 92, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
22 16 0.17
23 18 0.20
24 3 0.03
25 39 0.42
26 1 0.01
27 15 0.16
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (25 bp):
AAAAATATATACATAATATAGTGTA
Found at i:71755216 original size:27 final size:25
Alignment explanation
Indices: 71755168--71755249 Score: 71
Period size: 27 Copynumber: 3.3 Consensus size: 25
71755158 TAAAAAATAC
*
71755168 ATACATAATAT-A-ATTAAA-ATAT
1 ATACATAAGATAACATTAAAGATAT
*
71755190 ATACATAAGATAACATGTAAAATATAT
1 ATACATAAGATAACAT-T-AAAGATAT
* * **
71755217 ATAAATAATATAGTATTAAAGATAT
1 ATACATAAGATAACATTAAAGATAT
71755242 ATACATAA
1 ATACATAA
71755250 AATAGTATAA
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
22 10 0.21
23 1 0.02
24 2 0.04
25 15 0.31
26 4 0.08
27 16 0.33
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (25 bp):
ATACATAAGATAACATTAAAGATAT
Found at i:71755248 original size:74 final size:73
Alignment explanation
Indices: 71755126--71755268 Score: 171
Period size: 74 Copynumber: 1.9 Consensus size: 73
71755116 ATAAATACGT
* * * * *
71755126 GATAATATTAAAAATATGTACATAATATAGTGTAAAAAATACATACATAATATAAT-TAAAATAT
1 GATAACATTAAAAATATATAAATAATATAGTATAAAAAATACATACATAAAATAATATAAAATAT
71755190 ATACATAA
66 ATACATAA
* * * * *
71755198 GATAACATGTAAAATATATATAAATAATATAGTATTAAAGATATATACATAAAATAGTATAATAT
1 GATAACAT-TAAAA-ATATATAAATAATATAGTATAAAAAATACATACATAAAATAATATAAAAT
71755263 ATATAC
64 ATATAC
71755269 GTAATATAGA
Statistics
Matches: 58, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
72 7 0.12
73 5 0.09
74 35 0.60
75 11 0.19
ACGTcount: A:0.56, C:0.05, G:0.06, T:0.33
Consensus pattern (73 bp):
GATAACATTAAAAATATATAAATAATATAGTATAAAAAATACATACATAAAATAATATAAAATAT
ATACATAA
Found at i:71755334 original size:15 final size:16
Alignment explanation
Indices: 71755297--71755348 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 16
71755287 TATACCTAAT
* *
71755297 ATATTAAAAGAATATA
1 ATATTAATATAATATA
71755313 TATATATAATATAATATA
1 -ATAT-TAATATAATATA
*
71755331 ATATTAAGA-AATATA
1 ATATTAATATAATATA
71755346 ATA
1 ATA
71755349 ATAACAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
17 8 0.26
18 10 0.32
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (16 bp):
ATATTAATATAATATA
Found at i:71755912 original size:32 final size:30
Alignment explanation
Indices: 71755829--71755946 Score: 191
Period size: 30 Copynumber: 3.9 Consensus size: 30
71755819 GTGGTGGTGG
* *
71755829 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
71755859 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
71755889 AGTGTGGCTAGTGGGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGT--GGAGTTGGTGGTGGAGCA
71755921 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
71755947 CAAAGGCTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
30 53 0.65
32 29 0.35
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:71755925 original size:62 final size:60
Alignment explanation
Indices: 71755829--71755946 Score: 191
Period size: 62 Copynumber: 1.9 Consensus size: 60
71755819 GTGGTGGTGG
*
71755829 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCAAGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTAGGTAGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
* *
71755889 AGTGTGGCTAGTGGGGAGTTGGTGGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGT--GGAGTAGGTAGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
71755947 CAAAGGCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
60 12 0.23
62 41 0.77
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (60 bp):
AGTGTGGCTAGTGGAGTAGGTAGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:71756376 original size:18 final size:19
Alignment explanation
Indices: 71756325--71756382 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
71756315 TTATTATTGA
**
71756325 ATAATT-GACTGTTACCAG
1 ATAATTAGACTGTTACTGG
71756343 ATAATTA-ACTGTTACTGG
1 ATAATTAGACTGTTACTGG
*
71756361 AT-ATTAGACTGTTACTGA
1 ATAATTAGACTGTTACTGG
71756379 ATAA
1 ATAA
71756383 CTGAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 4 0.12
18 29 0.85
19 1 0.03
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
ATAATTAGACTGTTACTGG
Found at i:71756413 original size:36 final size:36
Alignment explanation
Indices: 71756372--71756500 Score: 113
Period size: 36 Copynumber: 3.6 Consensus size: 36
71756362 TATTAGACTG
*
71756372 TTACTGAATAACTGAATATTATTGAATAATTGATCA
1 TTACTGAATAACTGAATGTTATTGAATAATTGATCA
* * *
71756408 TTACTGAATAACTGATTGTCATTGAATGAA-TGA-CTG
1 TTACTGAATAACTGAATGTTATTGAAT-AATTGATC-A
* * *
71756444 TTACTGAATAACTTAATTGTTACTGAAT-ATCTGAT-T
1 TTACTGAATAACTGAA-TGTTATTGAATAAT-TGATCA
* *
71756480 TTACTGAATAATTGACTGTTA
1 TTACTGAATAACTGAATGTTA
71756501 CTGGATAACC
Statistics
Matches: 75, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
35 7 0.09
36 54 0.72
37 14 0.19
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (36 bp):
TTACTGAATAACTGAATGTTATTGAATAATTGATCA
Found at i:71756423 original size:18 final size:17
Alignment explanation
Indices: 71756372--71756509 Score: 82
Period size: 18 Copynumber: 7.7 Consensus size: 17
71756362 TATTAGACTG
71756372 TTACTGAATAACTGAATA
1 TTACTGAATAACTG-ATA
* *
71756390 TTATTGAATAATTGATCA
1 TTACTGAATAACTGAT-A
71756408 TTACTGAATAACTGAT-
1 TTACTGAATAACTGATA
* *
71756424 TGTCATTGAATGAA-TGACTG
1 T-T-ACTGAAT-AACTGA-TA
* *
71756444 TTACTGAATAACTTAATTG
1 TTACTGAATAAC-TGA-TA
* *
71756463 TTACTGAATATCTGATT
1 TTACTGAATAACTGATA
* *
71756480 TTACTGAATAATTGACTG
1 TTACTGAATAACTGA-TA
*
71756498 TTACTGGATAAC
1 TTACTGAATAAC
71756510 CGATCAATTG
Statistics
Matches: 95, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
16 1 0.01
17 19 0.20
18 55 0.58
19 19 0.20
20 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (17 bp):
TTACTGAATAACTGATA
Found at i:71758462 original size:3 final size:3
Alignment explanation
Indices: 71758447--71758519 Score: 56
Period size: 3 Copynumber: 23.7 Consensus size: 3
71758437 TAATCATGCA
* * * *
71758447 AAT AAT GAT AAT AAT AACA AAT AAC AAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
71758493 GAC AAT AAT AGAA AAT AAT AAA AAT AA
1 AAT AAT AAT A-AT AAT AAT AAT AAT AA
71758520 ATGCACTTAT
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
3 50 0.93
4 4 0.07
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:71758492 original size:31 final size:31
Alignment explanation
Indices: 71758447--71758519 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
71758437 TAATCATGCA
* *
71758447 AATAATGATAATAATAACAAATAACA-ACAAT
1 AATAATAATAATAATAAC-AATAACAGAAAAT
* *
71758478 AATAATAATAATAATGACAATAATAGAAAAT
1 AATAATAATAATAATAACAATAACAGAAAAT
*
71758509 AATAAAAATAA
1 AATAATAATAA
71758520 ATGCACTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 6 0.17
31 30 0.83
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.23
Consensus pattern (31 bp):
AATAATAATAATAATAACAATAACAGAAAAT
Found at i:71758598 original size:13 final size:12
Alignment explanation
Indices: 71758569--71758612 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
71758559 ATAAAACAAT
71758569 AATAATAATAAA
1 AATAATAATAAA
* *
71758581 TATAATAAGAGAA
1 AATAATAATA-AA
71758594 AATAATAATAAAA
1 AATAATAAT-AAA
71758607 AATAAT
1 AATAAT
71758613 TATTTTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 8 0.31
13 17 0.65
14 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:71759296 original size:14 final size:14
Alignment explanation
Indices: 71759277--71759338 Score: 61
Period size: 14 Copynumber: 3.9 Consensus size: 14
71759267 AAATAAAATC
71759277 AAGAAAGAAATAAT
1 AAGAAAGAAATAAT
71759291 AAGAAAGAAATAAATAAAAT
1 AAGAAAG----AAAT--AAT
71759311 CAAGAAAGAAATAAT
1 -AAGAAAGAAATAAT
71759326 AAGAAAGAAATAA
1 AAGAAAGAAATAA
71759339 AATAAAATCA
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
14 20 0.49
15 3 0.07
17 4 0.10
18 4 0.10
20 3 0.07
21 7 0.17
ACGTcount: A:0.73, C:0.02, G:0.13, T:0.13
Consensus pattern (14 bp):
AAGAAAGAAATAAT
Found at i:71759313 original size:35 final size:36
Alignment explanation
Indices: 71759254--71759360 Score: 207
Period size: 35 Copynumber: 3.0 Consensus size: 36
71759244 GATTCGAAAG
71759254 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
71759290 TAAGAAAGAAAT-AAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
71759325 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
71759361 AATAAAATCA
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
35 35 0.50
36 35 0.50
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.14
Consensus pattern (36 bp):
TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
Found at i:71759353 original size:22 final size:22
Alignment explanation
Indices: 71759326--71759370 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
71759316 AAGAAATAAT
71759326 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
71759348 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
71759370 A
1 A
71759371 CCTTAGGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.73, C:0.04, G:0.09, T:0.13
Consensus pattern (22 bp):
AAGAAAGAAATAAAATAAAATC
Found at i:71766462 original size:28 final size:28
Alignment explanation
Indices: 71766431--71766490 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
71766421 AAATTTAAAA
*
71766431 AAAAAATTAATTAGACCTAAAAATTTTT
1 AAAAAATTAATTAAACCTAAAAATTTTT
* * * *
71766459 AAAATATTTATTAAATCTTAAAATTTTT
1 AAAAAATTAATTAAACCTAAAAATTTTT
71766487 AAAA
1 AAAA
71766491 TTTTTAATGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (28 bp):
AAAAAATTAATTAAACCTAAAAATTTTT
Found at i:71766468 original size:9 final size:9
Alignment explanation
Indices: 71766450--71766497 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
71766440 ATTAGACCTA
71766450 AAAATTTTT
1 AAAATTTTT
71766459 AAAATATTTAT
1 AAAAT-TTT-T
* *
71766470 TAAA-TCTT
1 AAAATTTTT
71766478 AAAATTTTT
1 AAAATTTTT
71766487 AAAATTTTT
1 AAAATTTTT
71766496 AA
1 AA
71766498 TGTTAANNNN
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
8 4 0.12
9 21 0.66
10 3 0.09
11 4 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (9 bp):
AAAATTTTT
Found at i:71777158 original size:23 final size:24
Alignment explanation
Indices: 71777132--71777183 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
71777122 TTCTAGTGTG
* *
71777132 AAAATAATT-ATAGCCTAATATAA
1 AAAATAATTCAAAGCCTAACATAA
* *
71777155 AAAAAAATTCAAATCCTAACATAA
1 AAAATAATTCAAAGCCTAACATAA
71777179 AAAAT
1 AAAAT
71777184 TTTCCAAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.62, C:0.12, G:0.02, T:0.25
Consensus pattern (24 bp):
AAAATAATTCAAAGCCTAACATAA
Found at i:71778754 original size:8 final size:8
Alignment explanation
Indices: 71778720--71778795 Score: 82
Period size: 8 Copynumber: 9.5 Consensus size: 8
71778710 TAATGATGTG
*
71778720 AATAATAA
1 AATATTAA
71778728 AATATATAA
1 AATAT-TAA
71778737 AATA-TAA
1 AATATTAA
71778744 AATATTAA
1 AATATTAA
*
71778752 AATATCAA
1 AATATTAA
*
71778760 AATATCAA
1 AATATTAA
*
71778768 AATATCAA
1 AATATTAA
*
71778776 AATATCAA
1 AATATTAA
*
71778784 AATATTAG
1 AATATTAA
71778792 AATA
1 AATA
71778796 ATAATAATTA
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
7 7 0.11
8 48 0.77
9 7 0.11
ACGTcount: A:0.64, C:0.05, G:0.01, T:0.29
Consensus pattern (8 bp):
AATATTAA
Found at i:71778795 original size:16 final size:16
Alignment explanation
Indices: 71778731--71778788 Score: 93
Period size: 16 Copynumber: 3.8 Consensus size: 16
71778721 ATAATAAAAT
71778731 ATAT-AAAATAT-AAA
1 ATATCAAAATATCAAA
*
71778745 ATATTAAAATATCAAA
1 ATATCAAAATATCAAA
71778761 ATATCAAAATATCAAA
1 ATATCAAAATATCAAA
71778777 ATATCAAAATAT
1 ATATCAAAATAT
71778789 TAGAATAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
14 4 0.10
15 7 0.17
16 30 0.73
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (16 bp):
ATATCAAAATATCAAA
Found at i:71779004 original size:22 final size:24
Alignment explanation
Indices: 71778945--71779008 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
71778935 CGTGATAATA
71778945 TTAAAAATATATACAT-ATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
71778969 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
71778992 TT-AAAATATATACATAA
1 TTAAAAATATATACATAA
71779009 GATAACATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
22 14 0.38
23 3 0.08
24 15 0.41
25 5 0.14
ACGTcount: A:0.55, C:0.06, G:0.05, T:0.34
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:71779042 original size:16 final size:15
Alignment explanation
Indices: 71779023--71779072 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
71779013 ACATGTAGAA
71779023 AAATATATATGTATAT
1 AAATA-ATATGTATAT
71779039 AAATAATATAGTAT-T
1 AAATAATAT-GTATAT
* *
71779054 AAAGAATATGCATA-
1 AAATAATATGTATAT
71779068 AAATA
1 AAATA
71779073 GTATAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 7 0.24
15 13 0.45
16 9 0.31
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (15 bp):
AAATAATATGTATAT
Found at i:71779062 original size:24 final size:22
Alignment explanation
Indices: 71779035--71779085 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
71779025 ATATATATGT
*
71779035 ATATAAATAATATAGTATTAAAGA
1 ATATAAATAAAATAGTA-TAAA-A
**
71779059 ATATGCATAAAATAGTATAAAA
1 ATATAAATAAAATAGTATAAAA
71779081 ATATA
1 ATATA
71779086 TATATACGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 5 0.22
23 4 0.17
24 14 0.61
ACGTcount: A:0.59, C:0.02, G:0.08, T:0.31
Consensus pattern (22 bp):
ATATAAATAAAATAGTATAAAA
Found at i:71779086 original size:24 final size:24
Alignment explanation
Indices: 71779041--71779086 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
71779031 ATGTATATAA
* *
71779041 ATAATATAGTATTAAAGAATATGC
1 ATAAAATAGTATTAAAAAATATGC
71779065 ATAAAATAGTA-TAAAAATATAT
1 ATAAAATAGTATTAAAAA-ATAT
71779087 ATATACGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.33
Consensus pattern (24 bp):
ATAAAATAGTATTAAAAAATATGC
Found at i:71779734 original size:30 final size:30
Alignment explanation
Indices: 71779656--71779820 Score: 208
Period size: 30 Copynumber: 5.5 Consensus size: 30
71779646 TAGGTACAAG
* *
71779656 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * * *
71779686 AGGTAATGGAGCAA-GTGTGGCTAGTGAATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
71779716 TGGTGGTGGAAAAGGTGTGGCTAATGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
71779746 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
71779776 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
71779806 TGGTGGTGGAAAAGG
1 TGGTGGTGGAAAAGG
71779821 CTAAGATTTA
Statistics
Matches: 118, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
29 2 0.02
30 116 0.98
ACGTcount: A:0.23, C:0.04, G:0.47, T:0.26
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:71781500 original size:38 final size:39
Alignment explanation
Indices: 71781391--71781509 Score: 140
Period size: 37 Copynumber: 3.1 Consensus size: 39
71781381 CGAGTTTTCA
* *
71781391 TCCTAATCTTTTGTGTTAATCAAGACGCCCTTTTCGGGTTT
1 TCCTTATCTTTTTTGTTAATC-AGACG-CCTTTTCGGGTTT
71781432 TCACCTTGATC-TTTTT-TT-ATCAGACG-CTTTTC-GGTTT
1 T--CCTT-ATCTTTTTTGTTAATCAGACGCCTTTTCGGGTTT
71781469 TCCTTATCTTTTTTGTTAATCAGACGCCTTTTCGGGTTT
1 TCCTTATCTTTTTTGTTAATCAGACGCCTTTTCGGGTTT
71781508 TC
1 TC
71781510 ACCTTGATCA
Statistics
Matches: 68, Mismatches: 2, Indels: 18
0.77 0.02 0.20
Matches are distributed among these distances:
34 3 0.04
35 9 0.13
36 2 0.03
37 14 0.21
38 12 0.18
39 7 0.10
40 5 0.07
41 4 0.06
42 2 0.03
43 7 0.10
44 3 0.04
ACGTcount: A:0.14, C:0.22, G:0.15, T:0.49
Consensus pattern (39 bp):
TCCTTATCTTTTTTGTTAATCAGACGCCTTTTCGGGTTT
Found at i:71787495 original size:16 final size:15
Alignment explanation
Indices: 71787469--71787503 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
71787459 TGATGTGAAT
71787469 AATATAAAATATTAA
1 AATATAAAATATTAA
*
71787484 AATATCAAAATATTAG
1 AATAT-AAAATATTAA
71787500 AATA
1 AATA
71787504 ATAATAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATATAAAATATTAA
Found at i:71787761 original size:25 final size:25
Alignment explanation
Indices: 71787651--71787796 Score: 131
Period size: 25 Copynumber: 6.0 Consensus size: 25
71787641 TACGTGATAA
*
71787651 TATTAAAAATATGTACATAATATAG
1 TATTAAAAATATATACATAATATAG
* * *
71787676 TGTAAAAAATACATACATAATATA-
1 TATTAAAAATATATACATAATATAG
* *
71787700 -ATT-AAAATATATACATAAGATAA
1 TATTAAAAATATATACATAATATAG
* * *
71787723 CATGTAAATATATATAAATAATATAG
1 TAT-TAAAAATATATACATAATATAG
* *
71787749 TATTAAAGATATATACATAAAATAG
1 TATTAAAAATATATACATAATATAG
* *
71787774 TA-T-AATATATATACGTAATATAG
1 TATTAAAAATATATACATAATATAG
71787797 AATTTAGAAT
Statistics
Matches: 98, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
22 17 0.17
23 18 0.18
24 3 0.03
25 42 0.43
26 18 0.18
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (25 bp):
TATTAAAAATATATACATAATATAG
Found at i:71787781 original size:48 final size:47
Alignment explanation
Indices: 71787651--71787796 Score: 136
Period size: 48 Copynumber: 3.0 Consensus size: 47
71787641 TACGTGATAA
* * * *
71787651 TATTAAAAATATGTACATAATATAGTGTAAAAAATACATACATAATATA-
1 TATT-AAAATATATACATAAAATA-TGT-AAATATATATACATAATATAG
* *
71787700 -ATTAAAATATATACATAAGATAACATGTAAATATATATAAATAATATAG
1 TATTAAAATATATACAT-A-A-AATATGTAAATATATATACATAATATAG
*
71787749 TATTAAAGATATATACATAAAATA-GTATAATATATATACGTAATATAG
1 TATTAAA-ATATATACATAAAATATGTA-AATATATATACATAATATAG
71787797 AATTTAGAAT
Statistics
Matches: 81, Mismatches: 9, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
47 15 0.19
48 42 0.52
49 5 0.06
50 9 0.11
51 10 0.12
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.34
Consensus pattern (47 bp):
TATTAAAATATATACATAAAATATGTAAATATATATACATAATATAG
Found at i:71787853 original size:15 final size:16
Alignment explanation
Indices: 71787816--71787867 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 16
71787806 TATACCTAAT
* *
71787816 ATATTAAAAGAATATA
1 ATATTAATATAATATA
71787832 TATATATAATATAATATA
1 -ATAT-TAATATAATATA
*
71787850 ATATTAAGA-AATATA
1 ATATTAATATAATATA
71787865 ATA
1 ATA
71787868 ATAACAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 9 0.29
16 4 0.13
17 8 0.26
18 10 0.32
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.37
Consensus pattern (16 bp):
ATATTAATATAATATA
Found at i:71788432 original size:32 final size:30
Alignment explanation
Indices: 71788349--71788466 Score: 191
Period size: 30 Copynumber: 3.9 Consensus size: 30
71788339 GTGGTGGTGG
* *
71788349 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
71788379 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
*
71788409 AGTGTGGCTAGTGGGGAGTTGGTGGTGAAGCA
1 AGTGTGGCTAGT--GGAGTTGGTGGTGGAGCA
71788441 AGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGTGGAGTTGGTGGTGG
71788467 CAAAGGCTAG
Statistics
Matches: 82, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
30 53 0.65
32 29 0.35
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (30 bp):
AGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:71788445 original size:62 final size:60
Alignment explanation
Indices: 71788349--71788466 Score: 191
Period size: 62 Copynumber: 1.9 Consensus size: 60
71788339 GTGGTGGTGG
*
71788349 AGTGTGGCTAGTGGAGTAGGTAGTGGAGCAAGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
1 AGTGTGGCTAGTGGAGTAGGTAGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
* *
71788409 AGTGTGGCTAGTGGGGAGTTGGTGGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
1 AGTGTGGCTAGT--GGAGTAGGTAGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGG
71788467 CAAAGGCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 2
0.91 0.05 0.03
Matches are distributed among these distances:
60 12 0.23
62 41 0.77
ACGTcount: A:0.18, C:0.06, G:0.50, T:0.26
Consensus pattern (60 bp):
AGTGTGGCTAGTGGAGTAGGTAGTGAAGCAAGTGTGGCTAGTGGAGTTGGTGGTGGAGCA
Found at i:71788896 original size:18 final size:19
Alignment explanation
Indices: 71788845--71788902 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 19
71788835 TTATTATTGA
**
71788845 ATAATT-GACTGTTACCAG
1 ATAATTAGACTGTTACTGG
71788863 ATAATTA-ACTGTTACTGG
1 ATAATTAGACTGTTACTGG
*
71788881 AT-ATTAGACTGTTACTGA
1 ATAATTAGACTGTTACTGG
71788899 ATAA
1 ATAA
71788903 CTGAATATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
17 4 0.12
18 29 0.85
19 1 0.03
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (19 bp):
ATAATTAGACTGTTACTGG
Found at i:71788933 original size:36 final size:36
Alignment explanation
Indices: 71788892--71789020 Score: 113
Period size: 36 Copynumber: 3.6 Consensus size: 36
71788882 TATTAGACTG
*
71788892 TTACTGAATAACTGAATATTATTGAATAATTGATCA
1 TTACTGAATAACTGAATGTTATTGAATAATTGATCA
* * *
71788928 TTACTGAATAACTGATTGTCATTGAATGAA-TGA-CTG
1 TTACTGAATAACTGAATGTTATTGAAT-AATTGATC-A
* * *
71788964 TTACTGAATAACTTAATTGTTACTGAAT-ATCTGAT-T
1 TTACTGAATAACTGAA-TGTTATTGAATAAT-TGATCA
* *
71789000 TTACTGAATAATTGACTGTTA
1 TTACTGAATAACTGAATGTTA
71789021 CTGGATAACC
Statistics
Matches: 75, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
35 7 0.09
36 54 0.72
37 14 0.19
ACGTcount: A:0.36, C:0.10, G:0.14, T:0.40
Consensus pattern (36 bp):
TTACTGAATAACTGAATGTTATTGAATAATTGATCA
Found at i:71788943 original size:18 final size:17
Alignment explanation
Indices: 71788892--71789029 Score: 82
Period size: 18 Copynumber: 7.7 Consensus size: 17
71788882 TATTAGACTG
71788892 TTACTGAATAACTGAATA
1 TTACTGAATAACTG-ATA
* *
71788910 TTATTGAATAATTGATCA
1 TTACTGAATAACTGAT-A
71788928 TTACTGAATAACTGAT-
1 TTACTGAATAACTGATA
* *
71788944 TGTCATTGAATGAA-TGACTG
1 T-T-ACTGAAT-AACTGA-TA
* *
71788964 TTACTGAATAACTTAATTG
1 TTACTGAATAAC-TGA-TA
* *
71788983 TTACTGAATATCTGATT
1 TTACTGAATAACTGATA
* *
71789000 TTACTGAATAATTGACTG
1 TTACTGAATAACTGA-TA
*
71789018 TTACTGGATAAC
1 TTACTGAATAAC
71789030 CGATCAATTG
Statistics
Matches: 95, Mismatches: 16, Indels: 18
0.74 0.12 0.14
Matches are distributed among these distances:
16 1 0.01
17 19 0.20
18 55 0.58
19 19 0.20
20 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.14, T:0.39
Consensus pattern (17 bp):
TTACTGAATAACTGATA
Found at i:71790663 original size:24 final size:27
Alignment explanation
Indices: 71790614--71790683 Score: 76
Period size: 26 Copynumber: 2.6 Consensus size: 27
71790604 TTATAATAAT
*
71790614 AATAATAGTAATAATAGTTAAGTAGG-A
1 AATAATAATAAT-ATAGTTAAGTAGGAA
71790641 AATAATAATAATATA-TTAA-TAGGACA
1 AATAATAATAATATAGTTAAGTAGGA-A
71790667 AATAAT-ATAATAATAGT
1 AATAATAATAAT-ATAGT
71790684 GATAGTACTA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
24 4 0.11
25 9 0.24
26 13 0.34
27 12 0.32
ACGTcount: A:0.56, C:0.01, G:0.11, T:0.31
Consensus pattern (27 bp):
AATAATAATAATATAGTTAAGTAGGAA
Found at i:71790818 original size:21 final size:21
Alignment explanation
Indices: 71790779--71790822 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 21
71790769 AATAAACGTG
71790779 ATAGTAAAATACCATAATAATA
1 ATAGTAAAATA-CATAATAATA
71790801 ATAGCTAAAATA-ATAATAATA
1 ATAG-TAAAATACATAATAATA
71790822 A
1 A
71790823 CAATATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 10 0.48
22 4 0.19
23 7 0.33
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (21 bp):
ATAGTAAAATACATAATAATA
Found at i:71790983 original size:3 final size:3
Alignment explanation
Indices: 71790968--71791040 Score: 56
Period size: 3 Copynumber: 23.7 Consensus size: 3
71790958 TAATCATGCA
* * * *
71790968 AAT AAT GAT AAT AAT AACA AAT AAC AAC AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
71791014 GAC AAT AAT AGAA AAT AAT AAA AAT AA
1 AAT AAT AAT A-AT AAT AAT AAT AAT AA
71791041 ATGCACTTAT
Statistics
Matches: 54, Mismatches: 14, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
3 50 0.93
4 4 0.07
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.23
Consensus pattern (3 bp):
AAT
Found at i:71791013 original size:31 final size:31
Alignment explanation
Indices: 71790968--71791040 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
71790958 TAATCATGCA
* *
71790968 AATAATGATAATAATAACAAATAACA-ACAAT
1 AATAATAATAATAATAAC-AATAACAGAAAAT
* *
71790999 AATAATAATAATAATGACAATAATAGAAAAT
1 AATAATAATAATAATAACAATAACAGAAAAT
*
71791030 AATAAAAATAA
1 AATAATAATAA
71791041 ATGCACTTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 6 0.17
31 30 0.83
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.23
Consensus pattern (31 bp):
AATAATAATAATAATAACAATAACAGAAAAT
Found at i:71791119 original size:13 final size:12
Alignment explanation
Indices: 71791090--71791133 Score: 52
Period size: 13 Copynumber: 3.5 Consensus size: 12
71791080 ATAAAACAAT
71791090 AATAATAATAAA
1 AATAATAATAAA
* *
71791102 TATAATAAGAGAA
1 AATAATAATA-AA
71791115 AATAATAATAAAA
1 AATAATAAT-AAA
71791128 AATAAT
1 AATAAT
71791134 TATTTTGAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
12 8 0.31
13 17 0.65
14 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:71791816 original size:36 final size:36
Alignment explanation
Indices: 71791776--71791883 Score: 216
Period size: 36 Copynumber: 3.0 Consensus size: 36
71791766 GATTCGAAAG
71791776 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
71791812 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
71791848 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
1 TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
71791884 AATAAAATCA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 72 1.00
ACGTcount: A:0.72, C:0.03, G:0.11, T:0.14
Consensus pattern (36 bp):
TAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAA
Found at i:71791818 original size:14 final size:14
Alignment explanation
Indices: 71791799--71791861 Score: 66
Period size: 14 Copynumber: 4.9 Consensus size: 14
71791789 AAATAAAATC
71791799 AAGAAAGAAATAAT
1 AAGAAAGAAATAAT
71791813 AAGAAAGAAAT-A-
1 AAGAAAGAAATAAT
* *
71791825 AA-ATA-AAAT--C
1 AAGAAAGAAATAAT
71791835 AAGAAAGAAATAAT
1 AAGAAAGAAATAAT
71791849 AAGAAAGAAATAA
1 AAGAAAGAAATAA
71791862 AATAAAATCA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
10 6 0.15
11 4 0.10
12 6 0.15
13 1 0.02
14 24 0.59
ACGTcount: A:0.73, C:0.02, G:0.13, T:0.13
Consensus pattern (14 bp):
AAGAAAGAAATAAT
Found at i:71791840 original size:22 final size:22
Alignment explanation
Indices: 71791813--71791893 Score: 79
Period size: 22 Copynumber: 4.0 Consensus size: 22
71791803 AAGAAATAAT
71791813 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
*
71791835 AAGAAAGAAAT--AATAAGA--
1 AAGAAAGAAATAAAATAAAATC
* *
71791853 AAGAAA-TAA-AATA-AAA-TC
1 AAGAAAGAAATAAAATAAAATC
71791871 AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAAAATAAAATC
71791893 A
1 A
71791894 CCTTAGGCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 16
0.67 0.09 0.24
Matches are distributed among these distances:
17 4 0.09
18 13 0.29
19 2 0.04
20 9 0.20
21 3 0.07
22 14 0.31
ACGTcount: A:0.73, C:0.04, G:0.10, T:0.14
Consensus pattern (22 bp):
AAGAAAGAAATAAAATAAAATC
Found at i:71791841 original size:58 final size:57
Alignment explanation
Indices: 71791777--71791893 Score: 150
Period size: 58 Copynumber: 2.0 Consensus size: 57
71791767 ATTCGAAAGT
*
71791777 AAGAAAGAAATAAAATAAAATCAAGAAA-GAAAT-AAT-AAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAAT--AATAAAA--AAGAAATAAAATAAATCAAGAAAGAAATAAAATAAAATC
*
71791835 AAGAAAGAAATAATAAGAAAGAAATAAAATAAAATCAAGAAAGAAATAAAATAAAATC
1 AAGAAAGAAATAATAAAAAAGAAATAAAAT-AAATCAAGAAAGAAATAAAATAAAATC
71791893 A
1 A
71791894 CCTTAGGCTT
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
54 6 0.11
55 4 0.08
56 6 0.11
57 3 0.06
58 34 0.64
ACGTcount: A:0.73, C:0.03, G:0.10, T:0.14
Consensus pattern (57 bp):
AAGAAAGAAATAATAAAAAAGAAATAAAATAAATCAAGAAAGAAATAAAATAAAATC
Found at i:71799332 original size:9 final size:9
Alignment explanation
Indices: 71799314--71799361 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
71799304 ATTAGACCTA
71799314 AAAATTTTT
1 AAAATTTTT
71799323 AAAATATTTAT
1 AAAAT-TTT-T
* *
71799334 TAAA-TCTT
1 AAAATTTTT
71799342 AAAATTTTT
1 AAAATTTTT
71799351 AAAATTTTT
1 AAAATTTTT
71799360 AA
1 AA
71799362 TGTTAAGATC
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
8 4 0.12
9 21 0.66
10 3 0.09
11 4 0.12
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (9 bp):
AAAATTTTT
Found at i:71800450 original size:18 final size:18
Alignment explanation
Indices: 71800423--71800493 Score: 67
Period size: 18 Copynumber: 3.9 Consensus size: 18
71800413 ATGTCAGTCA
*
71800423 ATAAATAATTTAAAAATT
1 ATAAAAAATTTAAAAATT
71800441 ATAAAAAATTT--AAATT
1 ATAAAAAATTTAAAAATT
*
71800457 TTAAAATAATTATAAAAAGTT
1 ATAAAA-AATT-TAAAAA-TT
71800478 CAT-AAAAATTTAAAAA
1 -ATAAAAAATTTAAAAA
71800494 ATAATAAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 10 0.23
17 4 0.09
18 11 0.25
19 6 0.14
20 7 0.16
21 5 0.11
22 1 0.02
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (18 bp):
ATAAAAAATTTAAAAATT
Found at i:71800461 original size:16 final size:18
Alignment explanation
Indices: 71800425--71800472 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 18
71800415 GTCAGTCAAT
*
71800425 AAATAATTTAAAAATTATA
1 AAATAA-TTATAAATTATA
*
71800444 AAA-AATT-TAAATTTTA
1 AAATAATTATAAATTATA
71800460 AAATAATTATAAA
1 AAATAATTATAAA
71800473 AAGTTCATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 10 0.40
17 6 0.24
18 6 0.24
19 3 0.12
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAATAATTATAAATTATA
Found at i:71802531 original size:30 final size:30
Alignment explanation
Indices: 71802441--71802539 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
71802431 TAGGTACAAG
71802441 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* * *
71802471 AGGTAGTAGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
71802501 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
71802531 TGGTGGTGG
1 TGGTGGTGG
71802540 CAAAGGCTAG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 62 1.00
ACGTcount: A:0.18, C:0.06, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:71803344 original size:87 final size:86
Alignment explanation
Indices: 71803194--71803679 Score: 277
Period size: 87 Copynumber: 5.4 Consensus size: 86
71803184 GTGATCGTGA
* * * * * *
71803194 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTTAAAAACAGACATTAAAATAGAAATTGAAC
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTTAAAAACAAACATTAAAACAGAAATTGAAA
* *
71803259 ATAGCTCAGCACGTGAGCCAAG
65 ATACCTCAGCACGTGAACCAAG
* **
71803281 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-AAAACAAAATATGTAAAACAGATTTTGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAAC-AAACAT-TAAAACAGAAATTGAA
* * * *
71803345 AATACCTCGGTATGTGAACCGAG
64 AATACCTCAGCACGTGAACCAAG
* * * * **
71803368 GCTCAACTCACCTCTCGTAATATGAGTTGATTTTTGCAAAGCATAA-ATTGAAAAAAAAAACATC
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT-AAAAACA-AACATT-------AAAACAGA
** *
71803432 AATTGAAAATACCTCAGCGTGTG-ACCTGAG
57 AATTGAAAATACCTCAGCACGTGAACC-AAG
* * * *
71803462 GCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTGACAAACATAA-ATTGAAAAAAAAAAGAA
1 GCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTT-AAAAACA-AACATT-----AAAACAGAA
* *
71803526 ATTGAAAATACCTCAG--CGTG-TCCTGAG
58 ATTGAAAATACCTCAGCACGTGAACC-AAG
* * * *
71803553 GCTGAACTCACCTCTCGCAATATGAATTGATTTTTTTGGAAAAACAAA-ATTTGAAAAACAGAAT
1 GCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTT--AAAAACAAACA-TT--AAAACAGAAA
*** **
71803617 TTGAAAATACCTCAGTGTGTGAGTCAAG
59 TTGAAAATACCTCAGCACGTGAACCAAG
** *
71803645 GCTCAACTCACCACCCGCAATATGAGTTGATTTTT
1 GCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
71803680 TTGAAACACA
Statistics
Matches: 328, Mismatches: 51, Indels: 37
0.79 0.12 0.09
Matches are distributed among these distances:
85 5 0.02
86 8 0.02
87 91 0.28
88 3 0.01
89 6 0.02
90 29 0.09
91 36 0.11
92 40 0.12
93 39 0.12
94 55 0.17
95 16 0.05
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (86 bp):
GCTCAACTCACTTCTCGCAATATGAGTTGATTTTTAAAAACAAACATTAAAACAGAAATTGAAAA
TACCTCAGCACGTGAACCAAG
Found at i:71803465 original size:94 final size:92
Alignment explanation
Indices: 71803279--71803787 Score: 425
Period size: 87 Copynumber: 5.6 Consensus size: 92
71803269 ACGTGAGCCA
* * * * *
71803279 AGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTT-AAAACA-AAATATG--TAAAACAGAT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAACATAAAT-TGAAAAAAAAAAAT
* * **
71803339 -TTTGAAAATACCTCGGTATGTGAACC-G
65 AATTGAAAATACCTCAGCGTGTG-ACCTG
*
71803366 AGGCTCAACTCACCTCTCGTAATATGAGTTGA-TTTTTGCAAAGCATAAATTGAAAAAAAAAACA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAA-CATAAATTGAAAAAAAAAA-A
71803430 TCAATTGAAAATACCTCAGCGTGTGACCTG
64 T-AATTGAAAATACCTCAGCGTGTGACCTG
*
71803460 AGGCTCAACTCACCTCTCGCAATATGAGTTTATTTTTTGACAAACATAAATTGAAAAAAAAAAGA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-CAAACATAAATTGAAAAAAAAAA-A
71803525 -AATTGAAAATACCTCAGCGTGT--CCTG
64 TAATTGAAAATACCTCAGCGTGTGACCTG
* * * * *
71803551 AGGCTGAACTCACCTCTCGCAATATGAATTGATTTTTTTGGAAAAACA-AAATTTG-AAAAACAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT-G-CAAACATAAA-TTGAAAAAAAAA
* * *
71803614 AAT--TTGAAAATACCTCAGTGTGTGA-GTCA
62 AATAATTGAAAATACCTCAGCGTGTGACCT-G
* * * * * *
71803643 AGGCTCAACTCACCACCCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTG--AAGAACAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGCAA-ACATAAATTGAAAAAAAAAAA
* * *
71803706 -AATGGAAAACACCTCAGC--GT--CTTG
64 TAATTGAAAATACCTCAGCGTGTGACCTG
* * * *
71803730 AGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGCAA-ACATAAATTGAAAA
71803788 TACCTCAACA
Statistics
Matches: 357, Mismatches: 40, Indels: 48
0.80 0.09 0.11
Matches are distributed among these distances:
87 84 0.24
88 4 0.01
89 8 0.02
90 31 0.09
91 60 0.17
92 56 0.16
93 35 0.10
94 49 0.14
95 26 0.07
96 4 0.01
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (92 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGCAAACATAAATTGAAAAAAAAAAATA
ATTGAAAATACCTCAGCGTGTGACCTG
Found at i:71803572 original size:91 final size:92
Alignment explanation
Indices: 71803365--71803787 Score: 442
Period size: 91 Copynumber: 4.6 Consensus size: 92
71803355 TATGTGAACC
* * *
71803365 GAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTGAAAAAAAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG-AAAACAGAAATTGAAAAAAAAAA
*
71803428 CATCAATTGAAAATACCTCAGCGTGTGACCT
65 GA--AATTGAAAATACCTCAGCGTGTG-CCT
* *
71803459 GAGGCTCAACTCACCTCTCGCAATATGAGTTTA-TTTTTTGACAAACATAAATTGAAAAAAAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGA-AAACAGAAATTGAAAAAAAAAA
71803523 GAAATTGAAAATACCTCAGCGTGT-CCT
65 GAAATTGAAAATACCTCAGCGTGTGCCT
* *
71803550 GAGGCTGAACTCACCTCTCGCAATATGAATTGATTTTTTTGGAAAAACA-AAATTTG---AAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT-G-AAAACAGAAA-TTGAAAAAAAA
* * * **
71803611 CAGAATTTGAAAATACCTCAGTGTGTGAGT
63 AAGAAATTGAAAATACCTCAGCGTGTGCCT
* * * * *
71803641 CAAGGCTCAACTCACCACCCGCAATATGAGTTGATTTTTTTGAAACACAGAAATTG--AAGAACA
1 -GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAAAAAAA
* * *
71803704 A-AAATGGAAAACACCTCAGC--GT-CTT
64 AGAAATTGAAAATACCTCAGCGTGTGCCT
* *
71803729 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-ACAGAAATTGAAAA
71803788 TACCTCAACA
Statistics
Matches: 284, Mismatches: 32, Indels: 31
0.82 0.09 0.09
Matches are distributed among these distances:
87 49 0.17
88 1 0.00
89 4 0.01
90 31 0.11
91 56 0.20
92 51 0.18
93 31 0.11
94 33 0.12
95 28 0.10
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (92 bp):
GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAACAGAAATTGAAAAAAAAAAG
AAATTGAAAATACCTCAGCGTGTGCCT
Found at i:71803623 original size:13 final size:14
Alignment explanation
Indices: 71803591--71803623 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
71803581 GATTTTTTTG
71803591 GAAAAACAAAATTT
1 GAAAAACAAAATTT
*
71803605 GAAAAACAGAATTT
1 GAAAAACAAAATTT
71803619 GAAAA
1 GAAAA
71803624 TACCTCAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.06, G:0.12, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:71803649 original size:183 final size:178
Alignment explanation
Indices: 71803365--71803787 Score: 453
Period size: 183 Copynumber: 2.3 Consensus size: 178
71803355 TATGTGAACC
* ** * * * * *
71803365 GAGGCTCAACTCACCTCTCGTAATATGAGTTGA--TTTTTGCAAAGCATAAATTGAAAAAAAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTTGAAAAACAGAAATTG-AAAAACAGA
* * * *
71803428 CATCAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTA-
65 -AT---TTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCACCCGCAATATGAGTTGAT
* * *
71803492 TTTTTTGACAA-ACATAAATTGAAAAAAAAAAGAAATTGAAAATACCTCAGCGTGTCCT
126 TTTTTTGA-AACACAGAAATTG--AAAAAAAA-AAATGGAAAACACCTCAGC--GTCCT
* *
71803550 GAGGCTGAACTCACCTCTCGCAATATGAATTGATTTTTTTGGAAAAACA-AAATTTGAAAAACAG
1 GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTT-GAAAAACAGAAA-TTGAAAAACAG
* *
71803614 AATTTGAAAATACCTCAGTGTGTGA-GTCAAGGCTCAACTCACCACCCGCAATATGAGTTGATTT
64 AATTTGAAAATACCTCAGCGTGTGACCT-AAGGCTCAACTCACCACCCGCAATATGAGTTGATTT
* * *
71803678 TTTTGAAACACAGAAATTGAAGAACAAAAATGGAAAACACCTCAGCGTCTT
128 TTTTGAAACACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTCCT
* * *
71803729 GAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTTGAAAGACAGAAATTGAAAA
1 GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTTGAAAAACAGAAATTGAAAA
71803788 TACCTCAACA
Statistics
Matches: 206, Mismatches: 24, Indels: 23
0.81 0.09 0.09
Matches are distributed among these distances:
178 14 0.07
179 43 0.21
181 17 0.08
182 7 0.03
183 52 0.25
184 17 0.08
185 30 0.15
186 2 0.01
187 15 0.07
188 9 0.04
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (178 bp):
GAGGCTCAACTCACCTCTCGCAATATGAACTGATTTTTTTGAAAAACAGAAATTGAAAAACAGAA
TTTGAAAATACCTCAGCGTGTGACCTAAGGCTCAACTCACCACCCGCAATATGAGTTGATTTTTT
TGAAACACAGAAATTGAAAAAAAAAAATGGAAAACACCTCAGCGTCCT
Found at i:71803815 original size:75 final size:74
Alignment explanation
Indices: 71803705--71804139 Score: 559
Period size: 75 Copynumber: 5.9 Consensus size: 74
71803695 TGAAGAACAA
* * * * *
71803705 AAATGGAAAACACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTTTT
1 AAATTGAAAATACCTCAACTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
71803769 GAAAGACAG
66 GAAAGACAG
71803778 AAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTT
1 AAATTGAAAATACCTCAAC-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
71803841 TGACAA-ACAA
65 TGA-AAGACAG
* * *
71803851 AAATTGAAATTACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 AAATTGAAAATACCTCAACTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTT
*
71803915 TAAAAGACAG
65 TGAAAGACAG
*
71803925 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATATGAGTTGA---TTT
1 AAATTGAAAATACCTCAAC-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
71803987 TGACAA-ACAA
65 TGA-AAGACAG
* * **
71803997 AAATT-AAAATTACCTCAGC-GTCTTGAGGTTCAACTCACCTCTCGCAATATGAACTGATTTTTT
1 AAATTGAAAA-TACCTCAACTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
*
71804060 TGGAAGACAG
65 TGAAAGACAG
* *
71804070 AAATTGAAAATACATCAACGTGTCTTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAAC-TGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
71804135 TGAAA
65 TGAAA
71804140 CATAAATTAA
Statistics
Matches: 313, Mismatches: 31, Indels: 34
0.83 0.08 0.09
Matches are distributed among these distances:
70 34 0.11
71 41 0.13
72 23 0.07
73 67 0.21
74 32 0.10
75 80 0.26
76 36 0.12
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (74 bp):
AAATTGAAAATACCTCAACTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
GAAAGACAG
Found at i:71803988 original size:146 final size:145
Alignment explanation
Indices: 71803700--71804132 Score: 740
Period size: 146 Copynumber: 3.0 Consensus size: 145
71803690 GAAATTGAAG
* **
71803700 AACAAAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
*
71803765 TTTTGAAAGACAGAAATTGAAAATACCTCAACATGTCTTGAGGCTCAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
71803830 GAGTTGATTTTTGACA
131 GAGTTGA-TTTTGACA
*
71803846 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGA-TT
* *
71803911 TTTTTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTTTCGCAATA
65 TTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATA
71803976 TGAGTTGATTTTGACA
130 TGAGTTGATTTTGACA
* *
71803992 AACAAAAATTAAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAACTGATTT
1 AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
* * *
71804057 TTTTGGAAGACAGAAATTGAAAATACATCAACGTGTCTTGAGGCTGAACTCACCTCTCGCAATAT
66 TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
71804122 GAGTTGATTTT
131 GAGTTGATTTT
71804133 TTTGAAACAT
Statistics
Matches: 271, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
145 74 0.27
146 125 0.46
147 72 0.27
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (145 bp):
AACAAAAATTGAAATTACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTT
TTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTGACA
Found at i:71804259 original size:14 final size:14
Alignment explanation
Indices: 71804240--71804266 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
71804230 ATTTGTAAGG
71804240 CAAAAATTGAAAAA
1 CAAAAATTGAAAAA
71804254 CAAAAATTGAAAA
1 CAAAAATTGAAAA
71804267 TACCTCAGCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.15
Consensus pattern (14 bp):
CAAAAATTGAAAAA
Found at i:71804368 original size:13 final size:13
Alignment explanation
Indices: 71804322--71804366 Score: 63
Period size: 13 Copynumber: 3.4 Consensus size: 13
71804312 TTGATTTTTG
71804322 AAAAACAGAAATT
1 AAAAACAGAAATT
*
71804335 AAAAGCAGAAATT
1 AAAAACAGAAATT
*
71804348 GAAAAATAGAAATT
1 -AAAAACAGAAATT
71804362 AAAAA
1 AAAAA
71804367 TACCTCGGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
13 17 0.61
14 11 0.39
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (13 bp):
AAAAACAGAAATT
Found at i:71804396 original size:100 final size:101
Alignment explanation
Indices: 71804150--71804438 Score: 390
Period size: 100 Copynumber: 2.9 Consensus size: 101
71804140 CATAAATTAA
*
71804150 AAAAAT-GAAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAATAG-AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
71804214 TGA--TTTGAAAAGCAGAATTTGTAAGGCAAAAATTG
65 TGATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
71804249 AAAAACAAAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
71804314 GATTTTTGAAAAACAGAAATT-AAAAGCAGAAATTG
66 GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
* * * *
71804349 AAAAATAGAAATTAAAAATACCTCGGCATGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAAAATAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
71804414 GATTTTT-AAAAAGCATAAATTGAAA
66 GATTTTTGAAAAA-CAGAAATTGAAA
71804439 TTACCTCAGC
Statistics
Matches: 166, Mismatches: 19, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
99 66 0.40
100 82 0.49
101 18 0.11
ACGTcount: A:0.40, C:0.18, G:0.17, T:0.25
Consensus pattern (101 bp):
AAAAATAGAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAAACAGAAATTGAAAAGCAAAAATTG
Found at i:71804624 original size:177 final size:174
Alignment explanation
Indices: 71804249--71804705 Score: 645
Period size: 177 Copynumber: 2.6 Consensus size: 174
71804239 GCAAAAATTG
*
71804249 AAAAACAAAAATTGAAAATACCTCAGCGTG-CCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAAAAATTGAAATTACCTCAGCGTGTCC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
71804313 TGA-TTTTTGAAAAACAGAAATT-AAAAGCAGAAATTGAAAAATAGAAATTAAAAATACCTCGGC
65 TGATTTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAAATAGAAATTAAAAAGACCTCGGC
* * *
71804376 ATGCCCCGAGGCTCAGCTCACCTCTCGCAATATGAGTTGATTTTT
130 ATGCCCCGAGACTCAACTCACCTCTCGCAATACGAGTTGATTTTT
*
71804421 AAAAAGCATAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAA-CAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * *
71804486 TGATTTTTTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAACA-A-AATTTGAAAAGACCTCG
65 TGATTTTTTGAAAAGCAGAAATTG-AAAAGCAGAAATTGAAAA-ATAGAAATTAAAAAGACCTCG
* *
71804549 GCGTATGGCTCGAGACTCAACTCACCTCTCGCAATACGAGTTGATTTTTT
128 GC--ATGCCCCGAGACTCAACTCACCTCTCGCAATACGAGTTGA-TTTTT
* * * *
71804599 GACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATTTGAGTT
1 AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
71804664 GATTCTTTTGAAAAGTAGAAATTGAAAAGCAGAAATTGAAAA
66 GATT-TTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAA
71804706 TACCTCAGCA
Statistics
Matches: 255, Mismatches: 20, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
172 5 0.02
173 57 0.22
174 19 0.07
175 16 0.06
176 18 0.07
177 115 0.45
178 25 0.10
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.26
Consensus pattern (174 bp):
AAAAACAAAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTTGAAAAGCAGAAATTGAAAAGCAGAAATTGAAAAATAGAAATTAAAAAGACCTCGGCA
TGCCCCGAGACTCAACTCACCTCTCGCAATACGAGTTGATTTTT
Found at i:71804688 original size:14 final size:14
Alignment explanation
Indices: 71804671--71804705 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
71804661 GTTGATTCTT
*
71804671 TTGAAAAGTAGAAA
1 TTGAAAAGCAGAAA
71804685 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
71804699 TTGAAAA
1 TTGAAAA
71804706 TACCTCAGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.03, G:0.20, T:0.20
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:71804832 original size:83 final size:81
Alignment explanation
Indices: 71804597--71805166 Score: 322
Period size: 87 Copynumber: 6.9 Consensus size: 81
71804587 AGTTGATTTT
*
71804597 TTGAC-AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATTTGA
1 TTGACAAACAGAAATTGAAA-TACCTCAGC--GT-CTGAGGCTCAACTCACCTCTCGCAATATGA
*
71804661 GTTGATTCTTTTGAAAAGTAGAAA
62 GTTGA-T-TTTTGAAAA--ATAAA
*
71804685 TTGA-AAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATA
1 TTGACAAA-CAGAAATTG-AAATACCTCAG--CGT---CTGAGGCTCAACTCACCTCTCGCAATA
71804749 TGAGTTGGA-TTTTGAAAAATAAA
59 TGAGTT-GATTTTTGAAAAATAAA
*
71804772 TTGACAAACGGAAATTGACAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGACAAACAGAAATTGA-AATACCTCAGCGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGT
71804837 TGATTTTTTGAAAAAT--A
64 TGA-TTTTTGAAAAATAAA
** *
71804854 --GA-AATTA-AAA-T----TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAG
1 TTGACAAACAGAAATTGAAATACCTCAGC--GT-CTGAGGCTCAACTCACCTCTCGCAATATGAG
* *
71804910 TTGATTCTTTAAAAACATACA
63 TTGATT-TTTGAAAA-ATAAA
* * ** * * *
71804931 TT-A-AAATAGAAATTGAACATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGTAATAT
1 TTGACAAACAGAAATTGAA-ATACCTCAG--CGT---CTGAGGCTCAACTCACCTCTCGCAATAT
* ** * *
71804994 GAATTGATTTTTTTAAAAGACA
60 GAGTTGATTTTTGAAAAATAAA
** * ** ** *
71805016 --G--AAATTGAAAAT-ACCT-CAAC-GTGTCTTGAGGCTCAACTCACCTCCTCGCAATATGAGT
1 TTGACAAACAGAAATTGAAATACCTCAGCGTC-TGAGGCTCAACTCACCT-CTCGCAATATGAGT
* *
71805074 TGATTTTTGAAAACAGAAT
64 TGATTTTTGAAAA-ATAAA
* ** **
71805093 TTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGACAAACAGAAATTG-AAATACCTCAGCGT--CTGAGGCTCAACTCACCTCTCGCAATATGAG
*
71805158 TAGATTTTT
63 TTGATTTTT
71805167 TTGAAAACAG
Statistics
Matches: 382, Mismatches: 53, Indels: 97
0.72 0.10 0.18
Matches are distributed among these distances:
72 9 0.02
73 2 0.01
74 43 0.11
75 17 0.04
76 22 0.06
77 7 0.02
78 8 0.02
79 7 0.02
80 4 0.01
81 7 0.02
82 5 0.01
83 42 0.11
84 13 0.03
85 40 0.10
86 22 0.06
87 60 0.16
88 9 0.02
89 28 0.07
90 3 0.01
91 32 0.08
92 2 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (81 bp):
TTGACAAACAGAAATTGAAATACCTCAGCGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAAATAAA
Found at i:71804890 original size:248 final size:236
Alignment explanation
Indices: 71804564--71805091 Score: 679
Period size: 248 Copynumber: 2.2 Consensus size: 236
71804554 TGGCTCGAGA
* * *
71804564 CTCAACTCACCTCTCGCAATACGAGTTGATTTTTTG-ACAACAGAAATTGAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGT
* **
71804628 GTCCTGAGGCTCAACTCACCTCTCGCAATTTGAGTTGATTCTTTTGAAAAGTAGAAATTGAAAAG
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTC-TTT-AAAAACAGAAATT-AAAA-
* *
71804693 CAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGGA
127 CAGAAATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAATT-GA
* *
71804758 TTTTGAAAAATAAATTGACAAACGGAAATTGACAATACCTC-A-GCGTCTTGAGG
191 TTTT----AATAAA-AGAC--A--GAAATTGAAAATACCTCAACGCGTCTTGAGG
*
71804811 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAGAAATTAAAATTACCTCAGCGT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGT
* * * *
71804876 GTCCTGAGGCTCAACTCACCTCTCGTAATATGAGTTGATTCTTTAAAAACATACATTAAAATAGA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTAAAAACAGAAATTAAAACAGA
* * * * * *
71804941 AATTGAACATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTTGTAATATGAATTGATTTTT
131 AATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTA
* *
71805006 TTAAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGG
196 ATAAAAGACAGAAATTGAAAATACCTCAACGCGTCTTGAGG
71805047 CTCAACTCACCTCCTCGCAATATGAGTTGA-TTTTTG-AAAACAGAA
1 CTCAACTCACCT-CTCGCAATATGAGTTGATTTTTTGAAAAACAGAA
71805092 TTTGAAAAAC
Statistics
Matches: 253, Mismatches: 24, Indels: 20
0.85 0.08 0.07
Matches are distributed among these distances:
234 16 0.06
235 9 0.04
236 29 0.11
237 17 0.07
238 3 0.01
239 4 0.02
243 6 0.02
244 54 0.21
245 4 0.02
246 9 0.04
247 38 0.15
248 64 0.25
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (236 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAACAGAAATTAAAATTACCTCAGCGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTCTTTAAAAACAGAAATTAAAACAGA
AATTGAAAATACCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAATTGATTTTA
ATAAAAGACAGAAATTGAAAATACCTCAACGCGTCTTGAGG
Found at i:71805102 original size:14 final size:14
Alignment explanation
Indices: 71805079--71805113 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
71805069 TGAGTTGATT
71805079 TTTG-AAAACAGAA
1 TTTGAAAAACAGAA
*
71805092 TTTGAAAAACAGAT
1 TTTGAAAAACAGAA
71805106 TTTGAAAA
1 TTTGAAAA
71805114 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.51, C:0.06, G:0.14, T:0.29
Consensus pattern (14 bp):
TTTGAAAAACAGAA
Found at i:71805133 original size:161 final size:157
Alignment explanation
Indices: 71804688--71805180 Score: 557
Period size: 161 Copynumber: 3.1 Consensus size: 157
71804678 GTAGAAATTG
* * *
71804688 AAAAGCAGAAATTGAAAATACCTCAGCACGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCA--ACGTG-TCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * ***
71804753 TTGGA-TTTTGAAAA-ATAAATTGACAAACGGAAATTGACAATACCTCAGCGT-CTTGAGGCTCA
63 TT-GATTTTTGAAAACAT-AATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCAAGGCTCA
*
71804815 ACTCACCTCTCGCAATATGAGTTGATTTTTTG
126 ACTCACCTCTCGCAATATGAGTTGATTTTTTT
* * *
71804847 AAAAATAGAAATT-AAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGTAATATGAGT
1 AAAAACAGAAATTGAAAA-TACCTCAACGTGT-CTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * *
71804911 TGATTCTTTAAAAACATACATT--AAAATAGAAATTGAACATAGCTCAGCACGTGAGCCAAGGCT
64 TGATT-TTTGAAAACATA-ATTGAAAAACAGAAATTGAAAATACCTCAG--CGTG-CCCAAGGCT
* * * *
71804974 CAACTCACTTCTTGTAATATGAATTGATTTTTTT
124 CAACTCACCTCTCGCAATATGAGTTGATTTTTTT
71805008 AAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCCTCGCAATATGAG
1 AAAA-ACAGAAATTGAAAATACCTCAACGTGTC-TGAGGCTCAACTCACCT-CTCGCAATATGAG
* **
71805073 TTGATTTTTGAAAACAGAATTTGAAAAACAGATTTTGAAAATACCTCAGCGTGCCCAAGGCTCAA
63 TTGATTTTTGAAAACATAA-TTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCAAGGCTCAA
*
71805138 CTCACCTCTCGCAATATGAGTAGATTTTTTT
127 CTCACCTCTCGCAATATGAGTTGATTTTTTT
*
71805169 GAAAACAGAAAT
1 AAAAACAGAAAT
71805181 AAAAACATCA
Statistics
Matches: 278, Mismatches: 39, Indels: 33
0.79 0.11 0.09
Matches are distributed among these distances:
156 2 0.01
157 55 0.20
158 12 0.04
159 26 0.09
160 8 0.03
161 80 0.29
162 53 0.19
163 22 0.08
164 20 0.07
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (157 bp):
AAAAACAGAAATTGAAAATACCTCAACGTGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTGAAAACATAATTGAAAAACAGAAATTGAAAATACCTCAGCGTGCCCAAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTTTTT
Found at i:71815247 original size:12 final size:12
Alignment explanation
Indices: 71815230--71815265 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
71815220 ATTCATTTGA
71815230 CATTCATGCATT
1 CATTCATGCATT
*
71815242 CATTCATGCATC
1 CATTCATGCATT
*
71815254 CATTCATTCATT
1 CATTCATGCATT
71815266 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:71815259 original size:16 final size:17
Alignment explanation
Indices: 71815238--71815269 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71815228 GACATTCATG
71815238 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
71815254 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
71815270 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Done.