Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 229 of 259
Found at i:71823847 original size:72 final size:73
Alignment explanation
Indices: 71823746--71823920 Score: 246
Period size: 72 Copynumber: 2.4 Consensus size: 73
71823736 TATTTTTCAA
* * * * * *
71823746 AATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTTTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATCTCAATTTCTGT
71823811 GTT-TTAA-
66 -TTGTTAAG
**
71823818 TTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATCTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATCTCAATTTCTGT
71823883 TTGTTAAG
66 TTGTTAAG
*
71823891 AATCAACTCATATTGCGAGAGGTGGGTTGA
1 AATCAACTCATATTGCGAGAGGTGAGTTGA
71823921 ACCTTTTAAT
Statistics
Matches: 90, Mismatches: 11, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
71 2 0.02
72 61 0.68
73 27 0.30
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (73 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATCTCAATTTCTGT
TTGTTAAG
Found at i:71824094 original size:88 final size:88
Alignment explanation
Indices: 71823945--71824277 Score: 479
Period size: 88 Copynumber: 3.8 Consensus size: 88
71823935 ACTTTTTCAA
* *
71823945 AATCAGCTCATCTTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
71824010 CTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
*
71824033 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
71824098 TTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
* * * *
71824121 AATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCT
* * ** *
71824186 GTTTTTCAAT-TTCTGTCTTTCAAAAA
64 G-TTTTCATTATTATGT-TTTTGAAAG
* * *
71824212 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
71824277 T
66 T
71824278 GTCAAAAAAT
Statistics
Matches: 222, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
88 124 0.56
89 21 0.09
90 28 0.13
91 49 0.22
ACGTcount: A:0.25, C:0.19, G:0.22, T:0.35
Consensus pattern (88 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
TTTCATTATTATGTTTTTGAAAG
Found at i:71824193 original size:14 final size:14
Alignment explanation
Indices: 71824174--71824208 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
71824164 CGCCAAGGTA
71824174 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
71824188 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
71824202 CTTTCAA
1 TTTTCAA
71824209 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:71824312 original size:73 final size:76
Alignment explanation
Indices: 71824189--71824347 Score: 218
Period size: 73 Copynumber: 2.1 Consensus size: 76
71824179 AATTTCCGTT
* *
71824189 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACA
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
*
71824253 CGCTGAGGTAA
66 CGCCGAGGTAA
*
71824264 TTTCAATTTCTGT-TGTC-AAAAAATCAACTCGA-ATTGCGAGTGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTC-ATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
* *
71824326 TACGCCGAGGTAT
64 CACGCCGAGGTAA
71824339 TTTCAATTT
1 TTTCAATTT
71824348 TCGTTTTTCA
Statistics
Matches: 75, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
73 38 0.51
74 4 0.05
75 33 0.44
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.31
Consensus pattern (76 bp):
TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
CGCCGAGGTAA
Found at i:71824478 original size:74 final size:76
Alignment explanation
Indices: 71824353--71824514 Score: 222
Period size: 74 Copynumber: 2.1 Consensus size: 76
71824343 AATTTTCGTT
*
71824353 TTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTCAATTTCTG-CTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCAC
*
71824417 ACGCTGAGGTAA
65 ACGCCGAGGTAA
* * *
71824429 TTTCAATTTCTG-TTGTC-AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCA
1 TTTCAATTTCTGCTT-TCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CA
*
71824492 CACGCCGAGGTAT
64 CACGCCGAGGTAA
71824505 TTTCAATTTC
1 TTTCAATTTC
71824515 GTTTTTCAAT
Statistics
Matches: 77, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
74 41 0.53
75 2 0.03
76 34 0.44
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.30
Consensus pattern (76 bp):
TTTCAATTTCTGCTTTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACA
CGCCGAGGTAA
Found at i:71824517 original size:165 final size:163
Alignment explanation
Indices: 71824112--71825304 Score: 1249
Period size: 167 Copynumber: 7.3 Consensus size: 163
71824102 ATTATTATGT
* * * * *
71824112 TTTTGAAAGAATCAACTCGTATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
71824177 TCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
66 TCAATTT-CGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
71824242 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
130 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * *
71824276 TTGTCAAAAAATCAACTCGA-ATTGCGAGTGGCGAGTTGAGCCTCAGGTCATACGCCGAGGTATT
1 TTTTCAAAAAATCAACTC-ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
*
71824340 TTCAATTTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
65 TTCAA-TTTCGTTTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTT
71824405 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
128 GAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * *
71824441 TTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
1 TTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
*
71824506 TTCAATTTCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCGAA-TCATATTGCGAGAGGTGAGTT
65 TTCAATTTCGTTTTTCAATTTCTGTCTTTC-AAAAAAATC-AACTCATATTGCGAGAGGTGAGTT
* * * *
71824570 GAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATTTCTG
128 GAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG
*
71824608 TCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATT
1 T-TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
71824673 TTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
65 TTCAATTT-CGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * * * *
71824738 AGCTTCAGATCACACACTGAGGTTTTTTTTTTACTTCAATTTATAT
129 AGCCTCAG--GACACGCTGAGG--------TAATTTCAATTTCT-G
* * *
71824784 TTTTC-AAAAATGAACTCATATTGCGAGAGGTGAGTT-AGCCTCAGATCACACGCCGAGTTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
* * **
71824847 TCAATTTCCATTTTTCAATTTCTGT-TTTC--AAAATTCAACTCATATTGCGAGA-AAGAGTTGA
66 TCAATTT-CGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * *
71824908 GCCTCAAGACACGTTGAGGTACTTTCAATTTCTG
130 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * * *
71824942 TTTTCCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGA-G----
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATT
*
71825001 --C----T--ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGA-ATGGTGAGTTG
65 TTCAATTTCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGA-GGTGAGTTG
* * * * * *
71825057 AGCTTCAGATCACACACTGAGGTATTTTTTCAATTTATAT
129 AGCCTCAG--GACACGCTGAGGTA--ATTTCAATTTCT-G
* ** * * *
71825097 TTTTCAAAAAATCAACTCACATTGCGAGATTTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
* *
71825162 TCAA-ATCTGTTTTTCAA-TTCTGT-TTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTGA
66 TCAATTTC-GTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* * * *
71825222 GCCT-TGGCTCACGTGCTGAGCTATTTTCAATTTCTG
130 GCCTCAGG-ACAC--GCTGAGGTAATTTCAATTTCTG
*
71825258 TTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGAGC
1 ----TTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
71825305 TTTTTAATTT
Statistics
Matches: 877, Mismatches: 91, Indels: 119
0.81 0.08 0.11
Matches are distributed among these distances:
146 14 0.02
147 4 0.00
148 1 0.00
149 21 0.02
150 12 0.01
152 11 0.01
153 1 0.00
154 10 0.01
155 45 0.05
156 3 0.00
158 5 0.01
159 40 0.05
160 14 0.02
162 15 0.02
163 1 0.00
164 124 0.14
165 152 0.17
166 68 0.08
167 165 0.19
168 38 0.04
169 12 0.01
170 22 0.03
172 4 0.00
173 50 0.06
174 30 0.03
175 14 0.02
176 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (163 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
TCAATTTCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAGGACACGCTGAGGTAATTTCAATTTCTG
Found at i:71824597 original size:91 final size:90
Alignment explanation
Indices: 71824429--71824615 Score: 220
Period size: 91 Copynumber: 2.1 Consensus size: 90
71824419 GCTGAGGTAA
* * *
71824429 TTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
71824494 CGCCGAGGTATTTTCAATTTC-GTT
66 CGCCGAGCTATTTTCAATTTCTGTC
* *
71824518 TTTCAATTTCTGCCTT-TCAAAAAAAATCGAA-TCATATTGCGAGAGGTGAGTTGAGCCT-TGGC
1 TTTCAATTTCTG--TTGTC-AAAAAAATC-AACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-
* *
71824580 TCACGCGCTGAGCTATTTTCAATTTCTGTC
61 TCACACGCCGAGCTATTTTCAATTTCTGTC
71824610 TTTCAA
1 TTTCAA
71824616 AAAATCAACT
Statistics
Matches: 83, Mismatches: 9, Indels: 9
0.82 0.09 0.09
Matches are distributed among these distances:
89 12 0.14
90 4 0.05
91 57 0.69
92 10 0.12
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
CGCCGAGCTATTTTCAATTTCTGTC
Found at i:71824645 original size:76 final size:76
Alignment explanation
Indices: 71824517--71824691 Score: 235
Period size: 76 Copynumber: 2.3 Consensus size: 76
71824507 TCAATTTCGT
* ** *
71824517 TTTTCAATTTCTGCCTTTCAAAAAAAATCGAATCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTCTTTC--AAAAAATCGAATCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
* *
71824582 ACGCGCTGAGCTA
64 ACACGCCGAGCTA
71824595 TTTTCAATTTCTGTCTTTCAAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTTTCAAAAAATCGAA-TCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
71824659 CACGCCGAGGTA
65 CACGCCGAGCTA
* *
71824671 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
71824692 TTTCTGTCTT
Statistics
Matches: 87, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
75 2 0.02
76 67 0.77
78 18 0.21
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (76 bp):
TTTTCAATTTCTGTCTTTCAAAAAATCGAATCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
ACGCCGAGCTA
Found at i:71824690 original size:14 final size:14
Alignment explanation
Indices: 71824671--71824705 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
71824661 CGCCGAGGTA
71824671 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
71824685 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
71824699 CTTTCAA
1 TTTTCAA
71824706 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:71824749 original size:91 final size:89
Alignment explanation
Indices: 71824595--71824945 Score: 420
Period size: 91 Copynumber: 4.0 Consensus size: 89
71824585 CGCTGAGCTA
71824595 TTTTCAATTTCTGTCTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
1 TTTTCAATTTCTGTCTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
71824660 ACGCCGAGGTATTTTCAATTTCCGT
65 ACGCCGAGGTATTTTCAATTTCCGT
*
71824685 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
71824750 CACACTGAGGT-TTTT---TTT---T
64 CACGCCGAGGTATTTTCAATTTCCGT
* * * * *
71824769 TACTTCAATTTATATTTTTCAAAAATGAACTCATATTGCGAGAGGTGAGTT-AGCCTCAGATCAC
1 T-TTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
* *
71824833 ACGCCGAGTTATTTTCAATTTCCAT
65 ACGCCGAGGTATTTTCAATTTCCGT
* ** *
71824858 TTTTCAATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGA-AAGAGTTGAGCCTCA-A-GACA
1 TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
** * *
71824919 CGTTGAGGTACTTTCAATTTCTGT
66 CGCCGAGGTATTTTCAATTTCCGT
71824943 TTT
1 TTT
71824946 CCAAAAATCA
Statistics
Matches: 225, Mismatches: 26, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
82 19 0.08
83 34 0.15
84 2 0.01
85 38 0.17
86 9 0.04
87 35 0.16
88 10 0.04
89 2 0.01
90 23 0.10
91 53 0.24
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (89 bp):
TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
CGCCGAGGTATTTTCAATTTCCGT
Found at i:71824954 original size:333 final size:332
Alignment explanation
Indices: 71823943--71825304 Score: 1395
Period size: 333 Copynumber: 4.1 Consensus size: 332
71823933 CTACTTTTTC
* *
71823943 AAAATCAGCTCATCTTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
* * * * ** * *
71824006 CTG-TCTTCATTATTATGT-TTTTGAAAGAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 CCGTTTTTCAAT-TTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
* * * * * * *
71824069 GGTCACGC-C-GAGGTATTTTCAATTTCTGTTTTCATTATTATGTTTTTGAAAGAATCAACTCGT
130 GATCACACACTGAGG-----T---TTT-T-TTTTCAAT-TTATATTTTTCAAAAAATCAACTCAT
*
71824132 ATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCAAGGTATTTTCAATTTCCGTTTTTCAATT
184 ATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATT
* *
71824197 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
249 TCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGCT
* *
71824262 AATTTCAATTTCTGTTGTCAA
312 ATTTTCAATTTCTGTTTTCAA
* * *
71824283 AAAATCAACTCGA-ATTGCGAGTGGCGAGTTGAGCCTCAGGTCATACGCCGAGGTATTTTCAATT
1 AAAATCAACTC-ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATT
* *
71824347 TTCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
65 TCCGTTTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * ** * * * * *
71824412 AG--GACACGCTGAGG---TAATTTCAATTTCT-GTTGTCAAAAAAGTCAACTCGTATTGCGAGC
129 AGATCACACACTGAGGTTTTTTTTTCAATTTATATTTTTCAAAAAA-TCAACTCATATTGCGAGA
*
71824471 GGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT-CGTTTTTCAATTTCTGCCTTT
193 GGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTG-TTTT
* * *
71824535 CAAAAAAAATCGAA-TCATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTT
257 C--AAAAAATC-AACTCATATTGCGAGAGATGAGTTGAGCCTCAGG---ACACGCTGAGCTATTT
71824598 TCAATTTCTGTCTTTCAA
316 TCAATTTCTGT-TTTCAA
*
71824616 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
*
71824681 CCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
66 CCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
*
71824746 ATCACACACTGAGGTTTTTTTTTTACTTCAATTTATATTTTTC-AAAAATGAACTCATATTGCGA
131 ATCACACACTGAGG---TTTTTTT--TTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGA
* * * *
71824810 GAGGTGAGTT-AGCCTCAGATCACACGCCGAGTTATTTTCAATTTCCATTTTTCAATTTCTGTTT
191 GAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTTT
* * * * * *
71824874 TC-AAAATTCAACTCATATTGCGAGA-AAGAGTTGAGCCTCAAGACACGTTGAGGTACTTTCAAT
256 TCAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGCTATTTTCAAT
*
71824937 TTCTGTTTTCCA
321 TTCTGTTTTCAA
* * * *
71824949 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGA-G------C----
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATTTTCAATT
* *
71825002 T---ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGA-ATGGTGAGTTGAGCTTC
65 TCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAGCCTC
* * *
71825063 AGATCACACACTGAGG-TATTTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAT
129 AGATCACACACTGAGGTTTTTTTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGAG
** * * * * *
71825127 TTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAA-ATCTGTTTTTCAA-TTCTGTTTTC-
194 GCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTTTTCA
* *
71825189 AAAAATCAACTCATATTGCGAGA-AGTGAGTTGAGCCT-TGGCTCACGTGCTGAGCTATTTTCAA
259 AAAAATCAACTCATATTGCGAGAGA-TGAGTTGAGCCTCAGG-ACAC--GCTGAGCTATTTTCAA
71825252 TTTCTGTTTTTTTTCAAA
320 TTTCTG----TTTTC-AA
*
71825270 AAAATTCAACTCATATTGCGAAAGGTGAGTTGAGC
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
71825305 TTTTTAATTT
Statistics
Matches: 882, Mismatches: 95, Indels: 108
0.81 0.09 0.10
Matches are distributed among these distances:
313 51 0.06
314 51 0.06
315 31 0.04
316 19 0.02
318 1 0.00
319 73 0.08
320 5 0.01
321 5 0.01
322 29 0.03
326 1 0.00
329 30 0.03
330 98 0.11
331 8 0.01
332 68 0.08
333 135 0.15
334 33 0.04
336 13 0.01
337 20 0.02
340 73 0.08
341 38 0.04
342 43 0.05
343 14 0.02
344 43 0.05
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (332 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTT
CCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
ATCACACACTGAGGTTTTTTTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGAGGC
GAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCCGTTTTTCAATTTCTGTTTTCAAA
AAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAGGACACGCTGAGCTATTTTCAATTTCTG
TTTTCAA
Found at i:71825134 original size:78 final size:75
Alignment explanation
Indices: 71824858--71825306 Score: 214
Period size: 86 Copynumber: 5.8 Consensus size: 75
71824848 CAATTTCCAT
* * * ** * *
71824858 TTTTCAATTTCT-GTTTTC-AAAATTCAACTCATATTGCGAGA-AAGAGTTGAGCCTCA-A-GAC
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGATGTGAGTTGAG-CTTAGATCAC
** *
71824918 ACGTTGAGGTA
65 ACACTGAGCTA
* * * * * * * *
71824929 CTTTCAATTTCT-GTTTTCCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCAC
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGATGTGAGTTGAG-CTTAGATCAC
* *
71824993 GCGCTGAGCTA
65 ACACTGAGCTA
* * *
71825004 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGA-ATGGTGAGTTGAGCTTCAGATC
1 TTTTCAATTTATATTTTTC-AAAAAATCAACTCATATTGCGAGAT-GTGAGTTGAGCTT-AGATC
*
71825068 ACACACTGAGGTA
63 ACACACTGAGCTA
* * ** *
71825081 TTTTTTCAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGATTTGAGTTGAGCCTCGGGTC
1 --TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGATGTGAGTTGAG-CTTAGATC
** *
71825146 ACA-TGTCGAGGTA
63 ACACACT-GAGCTA
* *
71825159 TTTTCAAATCTGTTTTTCAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAG
1 TTTTC-AA------TTT--A-TAT-TTTTCAAAAAATCAACTCATATTGCGAGATGTGAGTTGAG
* * ***
71825223 CCTTGGCTCACGTGCTGAGCTA
55 -CTTAGATCACACACTGAGCTA
* * * *
71825245 TTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGAGCTT
1 TTTTCAA-TT-T-ATATTTTTC-AAAAAA-TCAACTCATATTGCGAGATGTGAGTTGAGCTT
71825307 TTTAATTTCT
Statistics
Matches: 301, Mismatches: 48, Indels: 49
0.76 0.12 0.12
Matches are distributed among these distances:
71 17 0.06
72 21 0.07
73 11 0.04
75 21 0.07
76 13 0.04
77 46 0.15
78 47 0.16
79 22 0.07
80 11 0.04
81 28 0.09
83 3 0.01
85 3 0.01
86 52 0.17
87 6 0.02
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (75 bp):
TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCTTAGATCACA
CACTGAGCTA
Found at i:71825187 original size:12 final size:13
Alignment explanation
Indices: 71825159--71825191 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
71825149 TGTCGAGGTA
71825159 TTTTCAAATCTGT
1 TTTTCAAATCTGT
*
71825172 TTTTCAATTCTG-
1 TTTTCAAATCTGT
71825184 TTTTCAAA
1 TTTTCAAA
71825192 AATCAACTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.24, C:0.15, G:0.06, T:0.55
Consensus pattern (13 bp):
TTTTCAAATCTGT
Found at i:71825222 original size:241 final size:249
Alignment explanation
Indices: 71824930--71825477 Score: 697
Period size: 241 Copynumber: 2.2 Consensus size: 249
71824920 GTTGAGGTAC
* *
71824930 TTTCAATTTCTGTTTTCCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
1 TTTCAAGTTCTGTTTT-CAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
71824995 GCTGAGCTATTTTCAATTTCTG-TCTTTCAAAAAAA-TCAACTCATATTGCGAATGGTGAGTTGA
65 GCTGAGCTATTTTCAATTTCTGTTCTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGA
*
71825058 GC-TTCAGA-TC-AC-ACA-CTGAGGT-A-TTTTTTCAATTTATATTTTTCAAAAAATCAACTCA
130 GCTTTCA-ATTCTACAACAGCTGAGGTGAGTCTTTT-AATTTATATTTTTC-AAAAATCAACTCA
** * ** * *
71825116 CATTGCGAGATTTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTC-AAATCTGTT
192 CATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCT
* *
71825173 TTTCAA-TTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG
1 TTTCAAGTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCG
*
71825237 CTGAGCTATTTTCAATTTCTGTTTTTTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTG
66 CTGAGCTATTTTCAATTTCTG--TTCTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTG
* * * * * * *
71825302 AGCTTTTTAATTTCTGCAAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTCAAAAATCAACTCA
129 AGC-TTTCAA-TTCTACAACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCAACTCA
* *
71825367 TATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATTGAGGTATTTTCAAAATCTGCT
192 CATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCT
** *
71825425 TTTCAAGTTAAG-TTTCAAAAAATCAACACATATTGCGAGAGGTGAGTTGAGCC
1 TTTCAAGTTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
71825478 GAGGTGAGTT
Statistics
Matches: 263, Mismatches: 26, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
241 67 0.25
242 9 0.03
243 6 0.02
244 12 0.05
245 29 0.11
246 1 0.00
247 3 0.01
248 2 0.01
249 1 0.00
250 2 0.01
251 58 0.22
252 31 0.12
253 42 0.16
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.36
Consensus pattern (249 bp):
TTTCAAGTTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCG
CTGAGCTATTTTCAATTTCTGTTCTTTCAAAAAAATTCAACTCATATTGCGAAAGGTGAGTTGAG
CTTTCAATTCTACAACAGCTGAGGTGAGTCTTTTAATTTATATTTTTCAAAAATCAACTCACATT
GCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGCT
Found at i:71825248 original size:86 final size:88
Alignment explanation
Indices: 71825097--71825262 Score: 230
Period size: 86 Copynumber: 1.9 Consensus size: 88
71825087 CAATTTATAT
** * *
71825097 TTTTCAAAAAATCAACTCACATTGCGAGATTTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTT
1 TTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTT
71825162 TCAA-ATCTGTTTTTCAATTCTG
66 TCAATATCTGTTTTTCAATTCTG
* * *
71825184 TTTTC-AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATT
1 TTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTC-GAGCTATT
*
71825247 TTCAATTTCTGTTTTT
65 TTCAATATCTGTTTTT
71825263 TTTCAAAAAA
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
85 1 0.01
86 54 0.78
87 14 0.20
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.38
Consensus pattern (88 bp):
TTTTCAAAAAATCAACTCACATTGCGAGAAGTGAGTTGAGCCTCGGCTCACATGTCGAGCTATTT
TCAATATCTGTTTTTCAATTCTG
Found at i:71825483 original size:15 final size:15
Alignment explanation
Indices: 71825463--71825492 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
71825453 CATATTGCGA
71825463 GAGGTGAGTTGAGCC
1 GAGGTGAGTTGAGCC
71825478 GAGGTGAGTTGAGCC
1 GAGGTGAGTTGAGCC
71825493 TTGGCTCACG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.13, G:0.47, T:0.20
Consensus pattern (15 bp):
GAGGTGAGTTGAGCC
Found at i:71826205 original size:19 final size:19
Alignment explanation
Indices: 71826181--71826227 Score: 87
Period size: 18 Copynumber: 2.5 Consensus size: 19
71826171 ATTAAGCCCT
71826181 CCAAAAAAAAACCTAA-CC
1 CCAAAAAAAAACCTAACCC
71826199 CCAAAAAAAAACCTAACCC
1 CCAAAAAAAAACCTAACCC
71826218 CCAAAAAAAA
1 CCAAAAAAAA
71826228 TCAAGAAACC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.64, C:0.32, G:0.00, T:0.04
Consensus pattern (19 bp):
CCAAAAAAAAACCTAACCC
Found at i:71828692 original size:12 final size:12
Alignment explanation
Indices: 71828675--71828709 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
71828665 TTCATTTGAA
71828675 ATTCATGCATTC
1 ATTCATGCATTC
*
71828687 ATTCATGCATCC
1 ATTCATGCATTC
*
71828699 ATTCATTCATT
1 ATTCATGCATT
71828710 GCATATCCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.43
Consensus pattern (12 bp):
ATTCATGCATTC
Found at i:71828703 original size:16 final size:17
Alignment explanation
Indices: 71828682--71828713 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71828672 GAAATTCATG
71828682 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
71828698 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
71828714 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:71846531 original size:167 final size:163
Alignment explanation
Indices: 71846343--71847156 Score: 618
Period size: 161 Copynumber: 4.9 Consensus size: 163
71846333 AATTTATTGT
* * * *
71846343 AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGACG-TATTTTCA
1 AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGA-GATATTTTCA
*
71846407 ATTTCCGTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAG-TGAGCC
64 ATTTCCGTTTTCAATTTCTG-CTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
71846471 TT-GGCTCACGAGCTGAGCTATTTTCAATTTCTGTCTTTC
127 TTAGG-TCAC-AGCTGAGCTATTTTCAATTTCTGT-TTTC
*
71846510 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGATATTTTCCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGATATTTTCAA
*
71846575 TTTTCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CT
65 TTTCCG-TTTTCAATTTCTG-CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
* * * * * *
71846639 TCAGATCACACACTGAGGTTTTTTTTTACTTCAATTTATATTTTTC
128 T-AGGTCACA-GCTGA-G----CTATT--TTCAATTTCT-GTTTTC
* *
71846685 -AAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGATATTTTCAAT
** * * ** *
71846749 TTCAATTTTTCAATTTCTGTTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTTA
66 TTC-CGTTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-
* *
71846812 AGG-CAC-GTTGAGGTATTTTCAATTTCTGTTTTC
129 AGGTCACAGCTGAGCTATTTTCAATTTCTGTTTTC
* ** * * * *
71846845 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGATATTTTCAAT
*
71846910 TT-C----T--A----T-CTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTT
66 TTCCGTTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC--CTT
** * * * * *
71846963 AATTTCTGCGAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTT
129 -A--GGT-C-ACAGCTGAGCT-A-T-TTTCAATTTCTGTTTTC
* * * *** *
71847006 AAAAAATCAACTCATATTACAAGAGGTGAGTT-AACCTCCAG-TCACATATCGAGGTATTTTCAA
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-CAGATCACACGCCGAGATATTTTCAA
** * * ** * *
71847069 AATCTGCTTTTCAAGTTAAG-TTTC-AAAAAATCAACTCATATTGCGAGAGTTGAGTTGAGCATT
65 TTTCCG-TTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT
* *
71847132 -GGCCCACGCGCTGAGCTATTTTCAA
129 AGG-TCAC-AGCTGAGCTATTTTCAA
71847157 CTCTTTTTTT
Statistics
Matches: 520, Mismatches: 80, Indels: 98
0.74 0.11 0.14
Matches are distributed among these distances:
148 4 0.01
149 1 0.00
150 31 0.06
152 4 0.01
153 1 0.00
155 1 0.00
156 1 0.00
157 1 0.00
158 7 0.01
159 1 0.00
160 27 0.05
161 112 0.22
162 5 0.01
163 4 0.01
164 2 0.00
165 7 0.01
166 2 0.00
167 91 0.17
168 40 0.08
169 4 0.01
170 33 0.06
171 40 0.08
172 8 0.02
173 79 0.15
175 13 0.03
176 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (163 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGATATTTTCAAT
TTCCGTTTTCAATTTCTGCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAG
GTCACAGCTGAGCTATTTTCAATTTCTGTTTTC
Found at i:71846570 original size:77 final size:77
Alignment explanation
Indices: 71846414--71846577 Score: 224
Period size: 77 Copynumber: 2.1 Consensus size: 77
71846404 TCAATTTCCG
* ** *
71846414 TTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAGTGAGCCTTGGCTCA
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGATCA
* *
71846479 CGAGCTGAGCTA
66 CGAGCCGAGATA
*
71846491 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
1 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAG-TGAGCCTCAGATC
71846555 AC-ACGCCGAGATA
65 ACGA-GCCGAGATA
*
71846568 TTTTCCATTT
1 TTTTCAATTT
71846578 TCGTTTTTCA
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
76 31 0.40
77 46 0.60
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (77 bp):
TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGATCA
CGAGCCGAGATA
Found at i:71846646 original size:91 final size:87
Alignment explanation
Indices: 71846491--71846805 Score: 392
Period size: 91 Copynumber: 3.6 Consensus size: 87
71846481 AGCTGAGCTA
71846491 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TTTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
71846556 CACGCCGAGATATTTTCCATTTTCGT
64 CACGCCGAGGTATTTT-CATTTTC-T
*
71846582 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTGTCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
71846647 CACACTGAGGT-TTTT--TTTTAC-
64 CACGCCGAGGTATTTTCATTTT-CT
* * * *
71846668 --TTCAATTTATATTTTTCAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
1 TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
*
71846731 CGCCGAGGTATTTTCAATTTCAAT
66 CGCCGAGGTATTTTCATTTTC--T
* **
71846755 TTTTCAATTTCTGT-TTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGA
1 TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
71846806 ACCTTAAGGC
Statistics
Matches: 197, Mismatches: 18, Indels: 21
0.83 0.08 0.09
Matches are distributed among these distances:
82 51 0.26
83 4 0.02
84 15 0.08
85 3 0.02
87 4 0.02
88 34 0.17
89 10 0.05
90 4 0.02
91 72 0.37
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (87 bp):
TTTTCAATTTCTGTCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
CGCCGAGGTATTTTCATTTTCT
Found at i:71846875 original size:161 final size:161
Alignment explanation
Indices: 71846343--71846922 Score: 578
Period size: 167 Copynumber: 3.5 Consensus size: 161
71846333 AATTTATTGT
* * * * *
71846343 AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGACGTATTTTCAA
1 AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAA
** * * *
71846408 TTTCCGTTTTCAATTTCTGCCTTTCAAAAAAAATCGACTCATATTGCGAGAGGTGAG-TGAGCCT
65 TTTCATTTTTCAATTTCTG-TTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
*
71846472 T--GGCTCACGAGCTGAGCTATTTTCAATTTCTGTCTTTC
127 TAAGG--CAC--GCTGAGGTATTTTCAATTTCTGT-TTTC
*
71846510 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGATATTTTCCA
1 -AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTT-CA
* * *
71846575 TTTTCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG-AGCT
64 ATTTCATTTTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCT
** * * * *
71846639 TCAGATCACACACTGAGGTTTTTTTTTACTTCAATTTATATTTTTC
127 T-A-A-GGCACGCTGAGG-----TATT--TTCAATTTCT-GTTTTC
*
71846685 -AAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAAT
* **
71846749 TTCAATTTTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTTAA
66 TTC-ATTTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTAA
*
71846813 GGCACGTTGAGGTATTTTCAATTTCTGTTTTC
130 GGCACGCTGAGGTATTTTCAATTTCTGTTTTC
* ** * * * *
71846845 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAAT
*
71846910 TTCTATCTTTCAA
66 TTC-ATTTTTCAA
71846923 AAAAATCAAC
Statistics
Matches: 348, Mismatches: 45, Indels: 45
0.79 0.10 0.10
Matches are distributed among these distances:
160 5 0.01
161 76 0.22
163 3 0.01
167 82 0.24
168 44 0.13
169 1 0.00
170 33 0.09
171 4 0.01
172 10 0.03
173 76 0.22
175 13 0.04
176 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (161 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGCCGAGGTATTTTCAAT
TTCATTTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTAAG
GCACGCTGAGGTATTTTCAATTTCTGTTTTC
Found at i:71846941 original size:77 final size:72
Alignment explanation
Indices: 71846755--71846957 Score: 257
Period size: 73 Copynumber: 2.8 Consensus size: 72
71846745 CAATTTCAAT
* ** *
71846755 TTTTCAATTTCTGTTTTC-AAAATTCAACTCATATTGCGAGAAATGAGTTGAACCTTAAGGCACG
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-AGGCACG
* *
71846819 TTGAGGTA
65 CTGAGCTA
*
71846827 TTTTCAATTTCTGTTTTCAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTT-GGCTCAC
1 TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGG--CA-
71846891 GCGCTGAGCTA
63 -CGCTGAGCTA
*
71846902 TTTTCAATTTCTATCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
71846958 TTTTTAATTT
Statistics
Matches: 115, Mismatches: 9, Indels: 9
0.86 0.07 0.07
Matches are distributed among these distances:
71 2 0.02
72 18 0.16
73 35 0.30
75 21 0.18
76 4 0.03
77 35 0.30
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (72 bp):
TTTTCAATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTAGGCACGC
TGAGCTA
Found at i:71846975 original size:30 final size:30
Alignment explanation
Indices: 71846939--71847000 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
71846929 CAACTCATAT
71846939 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
71846969 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
71846999 TG
1 TG
71847001 TTTTTAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:71847840 original size:17 final size:17
Alignment explanation
Indices: 71847818--71847865 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
71847808 TTAAGCCCTC
71847818 CCCAAAAAAAAACCTAA
1 CCCAAAAAAAAACCTAA
71847835 CCCAAAAAAAAACCTAA
1 CCCAAAAAAAAACCTAA
*
71847852 CCCCAAAAAAAACC
1 CCCAAAAAAAAACC
71847866 AAGAAACCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.62, C:0.33, G:0.00, T:0.04
Consensus pattern (17 bp):
CCCAAAAAAAAACCTAA
Found at i:71850372 original size:12 final size:12
Alignment explanation
Indices: 71850355--71850390 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
71850345 ATTCATTTGA
71850355 CATTCATGCATT
1 CATTCATGCATT
*
71850367 CATTCATGCATC
1 CATTCATGCATT
*
71850379 CATTCATTCATT
1 CATTCATGCATT
71850391 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:71850384 original size:16 final size:17
Alignment explanation
Indices: 71850363--71850394 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
71850353 GACATTCATG
71850363 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
71850379 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
71850395 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:71854509 original size:41 final size:41
Alignment explanation
Indices: 71854412--71854598 Score: 215
Period size: 41 Copynumber: 4.6 Consensus size: 41
71854402 TTAAACAGAT
** * * *
71854412 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
71854454 -CA-CGGCACTT-AGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
71854493 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
*
71854534 TCACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
71854573 CTTCACCGGCATTAAGCCTGCTAGAC
1 --TCACCGGCATTAAGCCTGCTAGAC
71854599 GTAACATCTG
Statistics
Matches: 128, Mismatches: 10, Indels: 15
0.84 0.07 0.10
Matches are distributed among these distances:
39 5 0.04
40 29 0.23
41 94 0.73
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (41 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:71861474 original size:12 final size:12
Alignment explanation
Indices: 71861457--71861481 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71861447 TATTCTACTG
71861457 AAATTTCAACTA
1 AAATTTCAACTA
71861469 AAATTTCAACTA
1 AAATTTCAACTA
71861481 A
1 A
71861482 CACAACCAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATTTCAACTA
Found at i:71862068 original size:41 final size:40
Alignment explanation
Indices: 71862010--71862197 Score: 213
Period size: 41 Copynumber: 4.6 Consensus size: 40
71862000 TTAAACAGAT
* * * *
71862010 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTG-ATTCAGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAAT--GTA
* *
71862052 -CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATGTA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
71862092 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAAATGTA
1 TCACCGGCATT-AGCCTGCTAGACTTAAAGTCTGAAATGTA
71862133 TCACCGGCATTTAGCCTGCTAGACTTAAAGTCTG-AAT-TA
1 TCACCGGCA-TTAGCCTGCTAGACTTAAAGTCTGAAATGTA
71862172 CTTCACCGGCATTAAGCCTGCTAGAC
1 --TCACCGGCATT-AGCCTGCTAGAC
71862198 GTAACATCTG
Statistics
Matches: 130, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
39 2 0.02
40 10 0.08
41 114 0.88
42 4 0.03
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
TCACCGGCATTAGCCTGCTAGACTTAAAGTCTGAAATGTA
Found at i:71862147 original size:82 final size:80
Alignment explanation
Indices: 71862010--71862197 Score: 236
Period size: 82 Copynumber: 2.3 Consensus size: 80
71862000 TTAAACAGAT
** * *
71862010 TCACCGGCATTTTGCCTGCTAGGCTTAAAGCCTGATTCAGTACACCGGCACTTAGCCTGCTAGAC
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGCCTGAAT-AGTACACCGGCACTTAGCCTGCTAGAC
*
71862075 ATATAGTCTGAAATGTA-
65 ATAAAGTCTG-AAT-TAC
* *
71862092 TCACCGGCATTAAGCCTGCTAGACTTAAAGTCTGAA-ATGTATCACCGGCATTTAGCCTGCTAGA
1 TCACCGGCATTAAGCCTGCTAGACTTAAAGCCTGAATA-GTA-CACCGGCACTTAGCCTGCTAGA
*
71862156 CTTAAAGTCTGAATTAC
64 CATAAAGTCTGAATTAC
71862173 TTCACCGGCATTAAGCCTGCTAGAC
1 -TCACCGGCATTAAGCCTGCTAGAC
71862198 GTAACATCTG
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
80 3 0.03
81 6 0.06
82 85 0.90
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (80 bp):
TCACCGGCATTAAGCCTGCTAGACTTAAAGCCTGAATAGTACACCGGCACTTAGCCTGCTAGACA
TAAAGTCTGAATTAC
Found at i:71868215 original size:12 final size:12
Alignment explanation
Indices: 71868198--71868225 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
71868188 ATGGCATCTT
71868198 AAAAAAAAAGAA
1 AAAAAAAAAGAA
71868210 AAAAAAAAAGAA
1 AAAAAAAAAGAA
71868222 AAAA
1 AAAA
71868226 GGGGATCAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.93, C:0.00, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:71869368 original size:72 final size:71
Alignment explanation
Indices: 71869247--71869441 Score: 257
Period size: 72 Copynumber: 2.7 Consensus size: 71
71869237 GAGTTAAGCC
* * *
71869247 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGGCACGC
1 TTTTCAATTTTTGTTTTT-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
71869311 TGAGGTA
65 TGAGGTA
**
71869318 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
1 TTTTCAATTTTTGT-TTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
71869383 TGAGGTA
65 TGAGGTA
* * * * *
71869390 ATCTCAATTTCTGTTTGTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 TTTTCAATTTTTGTTT-TTAA-AATCAACTCATATTGCGAGAGGTGAGTTGA
71869442 ACCTTTTAAT
Statistics
Matches: 108, Mismatches: 12, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
71 6 0.06
72 71 0.66
73 31 0.29
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGAT
GAGGTA
Found at i:71869615 original size:88 final size:88
Alignment explanation
Indices: 71869466--71869796 Score: 452
Period size: 88 Copynumber: 3.8 Consensus size: 88
71869456 ACTTTTTCAA
*
71869466 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
*
71869531 CTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
*
71869554 AATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
71869619 TTTCATTATTATGTTTTTGAAAG
66 TTTCATTATTATGTTTTTGAAAG
* * * * *
71869642 AATCAACTCGTATTGCGA-AAGCGATTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAATTTCC
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGT--CACGCCGAGGTATTTTCAATTTCT
* * ** *
71869706 GTTTTTCAAT-TTCTGTCTTTCAAAAA
64 G-TTTTCATTATTATGT-TTTTGAAAG
* * * *
71869732 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCATGACACGCTGAGGTAATTTCAATTT-TGT
1 AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
71869796 T
66 T
71869797 GTCAAAAAAA
Statistics
Matches: 217, Mismatches: 21, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
87 19 0.09
88 104 0.48
89 49 0.23
90 30 0.14
91 15 0.07
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.35
Consensus pattern (88 bp):
AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCCGAGGTATTTTCAATTTCTGT
TTTCATTATTATGTTTTTGAAAG
Found at i:71869713 original size:14 final size:14
Alignment explanation
Indices: 71869694--71869728 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
71869684 CGCCGAGGTA
71869694 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
71869708 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
71869722 CTTTCAA
1 TTTTCAA
71869729 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:71869832 original size:73 final size:76
Alignment explanation
Indices: 71869709--71869868 Score: 227
Period size: 73 Copynumber: 2.1 Consensus size: 76
71869699 AATTTCCGTT
* * *
71869709 TTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-TGACA
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGTCACA
71869773 CGCTGAGGTAA
66 CGCTGAGGTAA
* *
71869784 TTTCAATTT-TGT-TGTCAAAAAAATCAACTCGTATTGCGAGTGGAGAGTTGAGCCTCAGGTCAC
1 TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCA-GTCAC
* *
71869847 ACGCTGATGTAT
65 ACGCTGAGGTAA
71869859 TTTCAATTTC
1 TTTCAATTTC
71869869 CGTTTTTCAA
Statistics
Matches: 75, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
73 41 0.55
74 3 0.04
75 31 0.41
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (76 bp):
TTTCAATTTCTGTCTGTCAAAAAAATCAACTCATATTGCGAGAGGAGAGTTGAGCCTCAGTCACA
CGCTGAGGTAA
Found at i:71869999 original size:74 final size:75
Alignment explanation
Indices: 71869893--71870035 Score: 198
Period size: 74 Copynumber: 1.9 Consensus size: 75
71869883 TGCCTTTCAA
* * * *
71869893 AAAAAAATCAACTTATATTGTGAGAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTCAAT
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
71869957 TTCTGTTGTC
66 TTCTGTTGTC
* * * *
71869967 AAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-CACACGCCGAGGTAATTTCAA
71870032 TTTC
65 TTTC
71870036 CGTTTTTCAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
74 37 0.63
76 22 0.37
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (75 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGCACACGCCGAGGTAATTTCAAT
TTCTGTTGTC
Found at i:71870064 original size:166 final size:164
Alignment explanation
Indices: 71869633--71870835 Score: 1148
Period size: 167 Copynumber: 7.2 Consensus size: 164
71869623 ATTATTATGT
* * * * * *
71869633 TTTTGAAAGAATCAACTCGTATTGCGA-AAGCGATTTGAGCCTCAGGTCACACGCCGAGGTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
*
71869697 TCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
66 TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
71869762 GCCTCATGACACGCTGAGGTAATTTCAATTT-TG
131 GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * * * *
71869795 TTGTCAAAAAAATCAACTCGTATTGCGAGTGGAGAGTTGAGCCTCAGGTCACACGCTGATGTATT
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
* *
71869860 TTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTTATATTGTGAGAGGTGAGT
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGT
71869925 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
128 TGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * *
71869962 TTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
1 TTTTCAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
*
71870027 TTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTT
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * *
71870092 GAGCCT-TGGCTCACGCGCTGAGCTATTTTCAATTTCTG
129 GAGCCTCAGG---ACACGCTGAGGTAATTTCAATTTCTG
* *
71870130 TCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATGACACGCCGAGGTAT
1 T-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTAT
*
71870195 TTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
64 TTTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* * * * * * *
71870260 GAGCTTCAGATCACACACTGAGGTTTTTTTTTTTACTTCAATTTATAT
129 GAGCCTCAG--GACACGCTGAGG---------TAATTTCAATTTCT-G
* * *
71870308 TTTTC-AAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACATGCCGAGGTATTT
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
* ** ** *
71870372 TCAATTTCCATTTTTCAATTTCT-ATTTTC---AAAATGCAACTCATATTGCGAGAAATGAGTTA
66 TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTG
* * *
71870433 AGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
130 AGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
* * * *
71870468 TTTTC-AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGA-G----
1 TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACACGCCGAGGTATT
* *
71870526 --C----T---ATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * * * * *
71870582 AGCTTCAGATCACACACTGATGTATTTTTTCAATTTATAT
130 AGCCTCAG--GACACGCTGAGGTA--ATTTCAATTTCT-G
* * * * *
71870622 TTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATT
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATT
** * ** * *
71870687 TTCAAAATCTGTTTTTCAAAATCTG-TTTTC--AAAAATCAACTCATATTGCGAGAAGTGAGTTG
65 TTCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * * *
71870749 AGCCT-TGGCTCACGTGCTGAGCTATTTTCAATTTCTG
130 AGCCTCAGG-ACAC--GCTGAGGTAATTTCAATTTCTG
71870786 TTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 -------TTTTC-AAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
71870836 TTTTTAATTT
Statistics
Matches: 873, Mismatches: 105, Indels: 116
0.80 0.10 0.11
Matches are distributed among these distances:
146 12 0.01
147 4 0.00
149 30 0.03
150 5 0.01
151 10 0.01
153 12 0.01
154 5 0.01
156 41 0.05
157 3 0.00
159 2 0.00
160 48 0.05
161 10 0.01
162 3 0.00
163 22 0.03
164 60 0.07
165 16 0.02
166 109 0.12
167 129 0.15
168 69 0.08
169 86 0.10
170 26 0.03
171 17 0.02
172 57 0.07
174 4 0.00
175 78 0.09
177 14 0.02
178 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34
Consensus pattern (164 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTT
TCAATTTCCGTTTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
Found at i:71870119 original size:92 final size:90
Alignment explanation
Indices: 71869950--71870137 Score: 227
Period size: 92 Copynumber: 2.1 Consensus size: 90
71869940 GCTGAGGTAA
* * *
71869950 TTTCAATTTCTGTTGTCAAAAAAGTCAACTCGTATTGCGAGCGGCGAGTTGAGCCTCAGGTCACA
1 TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
* *
71870015 CGCCGAGGTATTTTCAATTTCCGTT
66 CGCCGAGCTATTTTCAATTTCCGTC
* * *
71870040 TTTCAATTTCTGCCTT-TCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGCT
1 TTTCAATTTCTG--TTGTC-AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-T
* * *
71870103 CACGCGCTGAGCTATTTTCAATTTCTGTC
62 CACACGCCGAGCTATTTTCAATTTCCGTC
71870132 TTTCAA
1 TTTCAA
71870138 AAAAATCAAC
Statistics
Matches: 83, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
90 12 0.14
91 4 0.05
92 67 0.81
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (90 bp):
TTTCAATTTCTGTTGTCAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACA
CGCCGAGCTATTTTCAATTTCCGTC
Found at i:71870196 original size:77 final size:77
Alignment explanation
Indices: 71870039--71870214 Score: 244
Period size: 77 Copynumber: 2.3 Consensus size: 77
71870029 CAATTTCCGT
* * ** *
71870039 TTTTCAATTTCTGCCTTTCAAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTC
1 TTTTCAATTTCTGTCTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATC
* *
71870104 ACGCGCTGAGCTA
65 ACACGCCGAGCTA
*
71870117 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATGA
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
*
71870182 CACGCCGAGGTA
66 CACGCCGAGCTA
* *
71870194 TTTTCAATTTCCGTTTTTCAA
1 TTTTCAATTTCTGTCTTTCAA
71870215 TTTCTGTCTT
Statistics
Matches: 87, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
77 69 0.79
78 18 0.21
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (77 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
CACGCCGAGCTA
Found at i:71870213 original size:14 final size:14
Alignment explanation
Indices: 71870194--71870228 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
71870184 CGCCGAGGTA
71870194 TTTTCAATTTCCGT
1 TTTTCAATTTCCGT
*
71870208 TTTTCAATTTCTGT
1 TTTTCAATTTCCGT
*
71870222 CTTTCAA
1 TTTTCAA
71870229 AAAAATCAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.20, G:0.06, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCCGT
Found at i:71870283 original size:91 final size:89
Alignment explanation
Indices: 71870117--71870471 Score: 408
Period size: 91 Copynumber: 4.0 Consensus size: 89
71870107 CGCTGAGCTA
* *
71870117 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATGA
1 TTTTCAATTTCTATCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
71870182 CACGCCGAGGTATTTTCAATTTCCGT
64 CACGCCGAGGTATTTTCAATTTCCGT
* *
71870208 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCA
1 TTTTCAATTTCTATCTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
71870273 CACACTGAGGT-TTTT---TTT---T
64 CACGCCGAGGTATTTTCAATTTCCGT
* * *
71870292 TTACTTCAATTTATATTTTTCAAAAATGAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
1 TT--TTCAATTTCTATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCA
* *
71870357 CATGCCGAGGTATTTTCAATTTCCAT
64 CACGCCGAGGTATTTTCAATTTCCGT
** * *
71870383 TTTTCAATTTCTAT-TTTC-AAAATGCAACTCATATTGCGAGAAATGAGTTAAGCCTCA-A-GAC
1 TTTTCAATTTCTATCTTTCAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCAC
** *
71870444 ACGTTGAGGTATTTTCAATTTCTGT
65 ACGCCGAGGTATTTTCAATTTCCGT
71870469 TTT
1 TTT
71870472 CAAAAATCAA
Statistics
Matches: 231, Mismatches: 23, Indels: 25
0.83 0.08 0.09
Matches are distributed among these distances:
84 53 0.23
85 4 0.02
86 39 0.17
87 9 0.04
88 36 0.16
89 11 0.05
90 4 0.02
91 75 0.32
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.37
Consensus pattern (89 bp):
TTTTCAATTTCTATCTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACA
CGCCGAGGTATTTTCAATTTCCGT
Found at i:71870399 original size:13 final size:13
Alignment explanation
Indices: 71870367--71870402 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
71870357 CATGCCGAGG
71870367 TATTTTCAATTTC
1 TATTTTCAATTTC
*
71870380 CATTTTTCAATTTC
1 TA-TTTTCAATTTC
71870394 TATTTTCAA
1 TATTTTCAA
71870403 AATGCAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.25, C:0.17, G:0.00, T:0.58
Consensus pattern (13 bp):
TATTTTCAATTTC
Found at i:71870567 original size:77 final size:77
Alignment explanation
Indices: 71870442--71871046 Score: 370
Period size: 88 Copynumber: 7.4 Consensus size: 77
71870432 AAGCCTCAAG
* * *
71870442 ACACGTTGAGGTATTTTCAATTTCTG-TTTTC--AAAAATCAACTTATATTGCGAGAGGTGAGTT
1 ACACGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
71870504 GAGCCTTGGCTC
66 GAGCCTTGGCTC
* *
71870516 ACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
1 ACACGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
* *
71870581 GAG-CTTCAGATC
66 GAGCCTT-GGCTC
* * * * *
71870593 ACACACTGATG-TATTTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGA
1 ACACGCTGA-GCTA--TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGA
* *
71870657 GTTGAGCCTCGGGTC
63 GTTGAGCCTTGGCTC
* * **
71870672 ACATG-TCGAGGTATTTTCAAAATCTGTTTTTCAAAATCTGTTTTCAAAAATCAACTCATATTGC
1 ACACGCT-GAGCTATTTTCAATTTCTGTTTTTC--AA---------AAAAATCAACTCATATTGC
*
71870736 GAGAAGTGAGTTGAGCCTTGGCTC
54 GAGAGGTGAGTTGAGCCTTGGCTC
**
71870760 ACGTGCTGAGCTATTTTCAATTTCTGTTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAG
1 ACACGCTGAGCTATTTTCAATTTCTG------TTTTTCAAAAAAA-TCAACTCATATTGCGAGAG
* **
71870825 GTGAGTTGAGCTTTTTAATTTCTGC
59 GTGAGTTGAGC---CT--TGGCT-C
* * * *
71870850 GAGA-GTTGAGTTGAGTCTTTTAATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGGTG
1 -ACACGCTGAGCT-A-T-TTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
* **
71870912 AGTTGAACCTCCAG-TC
62 AGTTGAGCCT-TGGCTC
** * *
71870928 ACA-TATCGAGGTATTTTCAAAATCTGCTTTTCAAGTTAAGTTTC-AAAAAATCAACTCATATTG
1 ACACGCT-GAGCTATTTTC--AA------TTTC-TGTT---TTTCAAAAAAATCAACTCATATTG
*
71870991 CAAGAGGTGAGTTGAGCCTTGGCTC
53 CGAGAGGTGAGTTGAGCCTTGGCTC
*
71871016 ACGCGCTGAGCTATTTTCAATTTCTGTTTTT
1 ACACGCTGAGCTATTTTCAATTTCTGTTTTT
71871047 AATGTCTGTT
Statistics
Matches: 415, Mismatches: 61, Indels: 108
0.71 0.10 0.18
Matches are distributed among these distances:
74 23 0.06
75 7 0.02
76 7 0.02
77 66 0.16
78 8 0.02
79 66 0.16
80 6 0.01
81 1 0.00
83 9 0.02
84 61 0.15
85 5 0.01
86 2 0.00
87 12 0.03
88 108 0.26
89 5 0.01
90 7 0.02
91 2 0.00
92 3 0.01
93 11 0.03
94 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (77 bp):
ACACGCTGAGCTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTTGGCTC
Found at i:71870674 original size:79 final size:77
Alignment explanation
Indices: 71870401--71870835 Score: 263
Period size: 79 Copynumber: 5.4 Consensus size: 77
71870391 TTCTATTTTC
** * ** ** *
71870401 AAAATGCAACTCATATTGCGAGAAATGAGTTAAGCCTC--AAGACACGTTGAGGTATTTTCAATT
1 AAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATT
* *
71870464 TCTGT-TTTC--A
65 TATATCTTTCAAA
* * * * *
71870474 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTT
* *
71870539 CTGTCTTTCAAA
66 ATATCTTTCAAA
* *
71870551 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACACACTGATG-TATTTTTTCAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGA-GCTA--TTTTCAA
*
71870615 TTTATATTTTTCAAA
63 TTTATATCTTTCAAA
* * * ** *
71870630 AAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGGTCACA-TGTCGAGGTATTTTCAAAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACT-GAGCTATTTTC--AA
* ***
71870694 TCTGTTTTTCAAAATCTGTTTTCA
63 ------TTT--ATATCT-TTCAAA
* * * ***
71870718 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAA---
* * *
71870783 CTGTTTTTTTTTTTCAAA
63 ---TTTATATCTTTCAAA
71870801 AAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 AAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGC
71870836 TTTTTAATTT
Statistics
Matches: 287, Mismatches: 52, Indels: 35
0.77 0.14 0.09
Matches are distributed among these distances:
72 27 0.09
73 5 0.02
74 24 0.08
75 4 0.01
77 52 0.18
78 3 0.01
79 65 0.23
83 7 0.02
84 31 0.11
85 3 0.01
86 8 0.03
87 4 0.01
88 53 0.18
89 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (77 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGATCACACACTGAGCTATTTTCAATTT
ATATCTTTCAAA
Found at i:71870714 original size:244 final size:248
Alignment explanation
Indices: 71870455--71871042 Score: 764
Period size: 256 Copynumber: 2.4 Consensus size: 248
71870445 CGTTGAGGTA
* *
71870455 TTTTCAATTTCTGTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
1 TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
71870520 GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAG
66 GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAG
*
71870584 C-TTCAGA-TC-AC-ACA-CTGA--TGTA-TTTTTTCAATTTATATTTTTCAAAAAAATCAACTC
131 CTTTCA-ATTCTACGACAGCTGAGTTG-AGTCTTTT-AATTTATATTTTTC--AAAAATCAACTC
* * ** * *
71870641 ACATTGCGAGATGTGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAAATCTGT
191 ACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
* * *
71870699 TTTTCAAAATCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGT
1 TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
*
71870764 GCTGAGCTATTTTCAATTTCTGTTTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGA
66 GCTGAGCTATTTTCAATTTCTG------TCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGA
* * * * * *
71870829 GTTGAGCTTTTTAATTTCTGCGAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTCAAAAATCAA
125 GTTGAGC-TTTCAA-TTCTACGACAGCTGAGTTGAGTCTTTTAATTTATATTTTTCAAAAATCAA
*
71870894 CTCATATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
188 CTCACATTGCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
* ** *
71870955 TTTTCAAGTTAAG-TTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACG
1 TTTTCAAATTCTGTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
71871019 CGCTGAGCTATTTTCAATTTCTGT
65 CGCTGAGCTATTTTCAATTTCTGT
71871043 TTTTAATGTC
Statistics
Matches: 299, Mismatches: 27, Indels: 30
0.84 0.08 0.08
Matches are distributed among these distances:
244 82 0.27
250 13 0.04
251 30 0.10
252 1 0.00
253 3 0.01
254 2 0.01
255 5 0.02
256 140 0.47
257 3 0.01
258 13 0.04
259 7 0.02
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.37
Consensus pattern (248 bp):
TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGC
GCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAG
CTTTCAATTCTACGACAGCTGAGTTGAGTCTTTTAATTTATATTTTTCAAAAATCAACTCACATT
GCGAGAGGTGAGTTGAACCTCCAGTCACATATCGAGGTATTTTCAAAATCTGC
Found at i:71870723 original size:14 final size:14
Alignment explanation
Indices: 71870685--71870720 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
71870675 TGTCGAGGTA
71870685 TTTTCAAAATCTGT
1 TTTTCAAAATCTGT
71870699 TTTTCAAAATCTG-
1 TTTTCAAAATCTGT
71870712 TTTTCAAAA
1 TTTTCAAAA
71870721 ATCAACTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.33, C:0.14, G:0.06, T:0.47
Consensus pattern (14 bp):
TTTTCAAAATCTGT
Found at i:71870853 original size:30 final size:30
Alignment explanation
Indices: 71870817--71870878 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
71870807 CAACTCATAT
71870817 TGCGAGAGGTGAGTTGAG-CTTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTC-TTTTAATTTC
*
71870847 TGCGAGAGTTGAGTTGAGTCTTTTAATTTC
1 TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
71870877 TG
1 TG
71870879 TTTTTCAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.97
31 1 0.03
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (30 bp):
TGCGAGAGGTGAGTTGAGTCTTTTAATTTC
Found at i:71870886 original size:412 final size:403
Alignment explanation
Indices: 71870061--71870917 Score: 954
Period size: 412 Copynumber: 2.1 Consensus size: 403
71870051 GCCTTTCAAA
*
71870061 AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
* *
71870126 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATGACACGCCGAG
66 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGAC-AG
* * * *
71870191 GTATTTTCAATTTCCGTTTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTG
130 GTATTGT-AA-TT-C-TTTTTCAATTTATATCTTTCAAAAAAATCAACTCACATTGCGAGAGGTG
* * * *
71870256 AGTTGAGCTTCAGATCACACACTGAGGTTTTTTTTTTTACTTCAATTTATATTTTTCAAAAATGA
191 AGTTGAGCCTCAGATCACACACTGAGGTTTTTTTGTTTA-TTCAA-TAATATTTTTCAAAAATCA
* * *
71870321 ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACATGCCGAGGTATTTTCAATTTCCATTTT
254 ACTCATATTGCGAGAAGTGAGTTGAGCCTCAGATCACATGCCGAGCTATTTTCAATTTCCATGTT
*
71870386 TCAATTTCTATTTTCAAAATGCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACACGTTGA
319 T--ATTTCTATTTTCAAAATGCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACAAGTTGA
71870451 GGTATTTTCAATTTCTGTTTTC
382 GGTATTTTCAATTTCTGTTTTC
*
71870473 AAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
* *
71870538 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC-AC-TG
66 TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGACAGG
* *
71870601 -A-TGT-A-T-TTTTTCAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTG
131 TATTGTAATTCTTTTTCAATTTATATCTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTG
* * ** *
71870661 AGCCTCGGGTCACA-TGTCGAGGTATTTTCAAAATCTGTTT-TTCAA-AATCTGTTTTCAAAAAT
196 AGCCTCAGATCACACACT-GAGGT-TTTT-----T-TGTTTATTCAATAATAT-TTTTCAAAAAT
** * * *
71870723 CAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAATTT-C-TG
252 CAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGATCACATGCCGAGCTATTTTCAATTTCCATG
* ** * * *
71870786 TTT-TTT-T-TTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTAATTTCT
317 TTTATTTCTATTTTC---AAAATGCAACTCATATTGCGAGAAATGAGTTAAGC--CTCAA-----
* *
71870848 G-CGAGAGTTGAGTTGAGTCTTTTAATTTCTGTTTTTC
372 GAC-A-AGTTGAGGT-A-T-TTTCAATTTCTG-TTTTC
71870885 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGA
71870918 ACCTCCAGTC
Statistics
Matches: 381, Mismatches: 39, Indels: 50
0.81 0.08 0.11
Matches are distributed among these distances:
397 5 0.01
398 1 0.00
399 4 0.01
400 96 0.25
401 4 0.01
402 7 0.02
403 5 0.01
404 63 0.17
405 6 0.02
406 2 0.01
407 8 0.02
408 8 0.02
409 2 0.01
410 1 0.00
411 12 0.03
412 157 0.41
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (403 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAATT
TCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGATCACACGACAGG
TATTGTAATTCTTTTTCAATTTATATCTTTCAAAAAAATCAACTCACATTGCGAGAGGTGAGTTG
AGCCTCAGATCACACACTGAGGTTTTTTTGTTTATTCAATAATATTTTTCAAAAATCAACTCATA
TTGCGAGAAGTGAGTTGAGCCTCAGATCACATGCCGAGCTATTTTCAATTTCCATGTTTATTTCT
ATTTTCAAAATGCAACTCATATTGCGAGAAATGAGTTAAGCCTCAAGACAAGTTGAGGTATTTTC
AATTTCTGTTTTC
Found at i:71871749 original size:27 final size:26
Alignment explanation
Indices: 71871705--71871781 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
71871695 CCCTCCCAAA
71871705 AAAAAACCTAACCC--AAAAAAAAAG
1 AAAAAACCTAACCCAAAAAAAAAAAG
71871729 AAAAAACCTAACCCAAAAAAAGAAAA-
1 AAAAAACCTAACCCAAAAAAA-AAAAG
71871755 AGAAAAACCTAACCCCAAAAAAAAAAA
1 A-AAAAACCTAA-CCCAAAAAAAAAAA
71871782 CCAAGAAACC
Statistics
Matches: 48, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
24 14 0.29
26 6 0.12
27 18 0.38
28 10 0.21
ACGTcount: A:0.71, C:0.21, G:0.04, T:0.04
Consensus pattern (26 bp):
AAAAAACCTAACCCAAAAAAAAAAAG
Found at i:71871792 original size:28 final size:24
Alignment explanation
Indices: 71871702--71871781 Score: 115
Period size: 24 Copynumber: 3.2 Consensus size: 24
71871692 AAGCCCTCCC
71871702 AAAAAAAAACCTAACCCAAAAAAA
1 AAAAAAAAACCTAACCCAAAAAAA
*
71871726 AAGAAAAAACCTAACCCAAAAAAAGA
1 AAAAAAAAACCTAACCC-AAAAAA-A
*
71871752 AAAAGAAAAACCTAACCCCAAAAAA
1 AAAA-AAAAACCTAACCCAAAAAAA
71871777 AAAAA
1 AAAAA
71871782 CCAAGAAACC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
24 17 0.34
25 11 0.22
26 9 0.18
27 13 0.26
ACGTcount: A:0.72, C:0.20, G:0.04, T:0.04
Consensus pattern (24 bp):
AAAAAAAAACCTAACCCAAAAAAA
Found at i:71873469 original size:30 final size:30
Alignment explanation
Indices: 71873428--71873526 Score: 162
Period size: 30 Copynumber: 3.3 Consensus size: 30
71873418 TAGGTACAAG
*
71873428 TGGTGGTGGAGCAAGTGTGACTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
* *
71873458 AGGTAGTGGAGCAAGTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
*
71873488 TGGTGGTGGAGCAATTGTGGCTAGTGGAGT
1 TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
71873518 TGGTGGTGG
1 TGGTGGTGG
71873527 CAAAGGCTAG
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.18, C:0.06, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAGCAAGTGTGGCTAGTGGAGT
Found at i:71873516 original size:18 final size:17
Alignment explanation
Indices: 71873461--71873516 Score: 50
Period size: 18 Copynumber: 3.5 Consensus size: 17
71873451 GTGGAGTAGG
71873461 TAGTGGAGCAAGTGTGGC
1 TAGTGGAGCAA-TGTGGC
71873479 TAGTGGAG---T-TGG-
1 TAGTGGAGCAATGTGGC
*
71873491 TGGTGGAGCAATTGTGGC
1 TAGTGGAGCAA-TGTGGC
71873509 TAGTGGAG
1 TAGTGGAG
71873517 TTGGTGGTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 1 0.03
16 1 0.03
17 3 0.10
18 15 0.50
ACGTcount: A:0.20, C:0.07, G:0.46, T:0.27
Consensus pattern (17 bp):
TAGTGGAGCAATGTGGC
Found at i:71881630 original size:14 final size:13
Alignment explanation
Indices: 71881586--71881633 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
71881576 ATTAGACGGT
* *
71881586 AAAAAAATAATGC
1 AAAAAAATTATGA
**
71881599 AAAAAAATTATTTT
1 AAAAAAATTA-TGA
71881613 AAAAAAATTATGA
1 AAAAAAATTATGA
71881626 AAAAAAAT
1 AAAAAAAT
71881634 CAATAAAGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (13 bp):
AAAAAAATTATGA
Found at i:71889198 original size:17 final size:18
Alignment explanation
Indices: 71889158--71889199 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
71889148 TTGTTATAAC
71889158 AAAATTATTATTTAAATAT
1 AAAA-TATTATTTAAATAT
* *
71889177 TAAATATT-TTTAATTAT
1 AAAATATTATTTAAATAT
71889194 AAAATA
1 AAAATA
71889200 ATAAAAAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 13 0.65
18 4 0.20
19 3 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
AAAATATTATTTAAATAT
Found at i:71890983 original size:18 final size:18
Alignment explanation
Indices: 71890944--71890985 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
71890934 TCTCTCTAAG
* *
71890944 TTTTTCTCCTTTTATTTG
1 TTTTCCTCCTTTTATTTA
71890962 TTTTCCTCC-TTTATTCTA
1 TTTTCCTCCTTTTATT-TA
71890980 TTTTCC
1 TTTTCC
71890986 AACACAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTCCTCCTTTTATTTA
Found at i:71902711 original size:15 final size:15
Alignment explanation
Indices: 71902687--71902719 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
71902677 TAGGGGTAAT
71902687 ATTGCAACATTAAGG
1 ATTGCAACATTAAGG
*
71902702 ATTGCGACATTAAGG
1 ATTGCAACATTAAGG
71902717 ATT
1 ATT
71902720 CATGTCACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (15 bp):
ATTGCAACATTAAGG
Found at i:71903299 original size:13 final size:13
Alignment explanation
Indices: 71903281--71903308 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
71903271 GCCGATCACT
71903281 TTATGACTTTAAA
1 TTATGACTTTAAA
71903294 TTATGACTTTAAA
1 TTATGACTTTAAA
71903307 TT
1 TT
71903309 TTATGGTACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.50
Consensus pattern (13 bp):
TTATGACTTTAAA
Found at i:71919862 original size:44 final size:45
Alignment explanation
Indices: 71919775--71919867 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 45
71919765 AAAATTGTAA
* *
71919775 ATTAAATTATAATATTTTTAAATGTGTAATAATTGTCATAACTTCT
1 ATTAAATTATAATATTTCTAAA-GTGTAATAATTATCATAACTTCT
*
71919821 ATTAAATTATAATTATTTCTAAA-TGT-ATAATTATTATAACTTCT
1 ATTAAATTATAA-TATTTCTAAAGTGTAATAATTATCATAACTTCT
71919865 ATT
1 ATT
71919868 CTACTTCAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 19 0.44
45 3 0.07
46 12 0.28
47 9 0.21
ACGTcount: A:0.40, C:0.06, G:0.04, T:0.49
Consensus pattern (45 bp):
ATTAAATTATAATATTTCTAAAGTGTAATAATTATCATAACTTCT
Found at i:71922909 original size:15 final size:15
Alignment explanation
Indices: 71922889--71922917 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
71922879 ACTAAAACCT
71922889 ACGCTTGAATTTTGA
1 ACGCTTGAATTTTGA
71922904 ACGCTTGAATTTTG
1 ACGCTTGAATTTTG
71922918 TTTTTCAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.14, G:0.21, T:0.41
Consensus pattern (15 bp):
ACGCTTGAATTTTGA
Found at i:71924577 original size:14 final size:12
Alignment explanation
Indices: 71924527--71924572 Score: 56
Period size: 12 Copynumber: 3.6 Consensus size: 12
71924517 ATATACATAC
71924527 TTATATATATTT
1 TTATATATATTT
*
71924539 TATATTTTATAATTT
1 T-TA-TATAT-ATTT
71924554 TTATATATATTT
1 TTATATATATTT
71924566 TTATATA
1 TTATATA
71924573 CATATACGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
12 12 0.41
13 6 0.21
14 6 0.21
15 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATATATATTT
Found at i:71926120 original size:4 final size:4
Alignment explanation
Indices: 71926091--71926131 Score: 50
Period size: 4 Copynumber: 10.2 Consensus size: 4
71926081 CATCGACCAT
71926091 CATA CATAA CATA CACT- CAT- CATA CATA CATA CATA CATA C
1 CATA CAT-A CATA CA-TA CATA CATA CATA CATA CATA CATA C
71926132 CTTATCAACC
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 4 0.12
4 25 0.74
5 5 0.15
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:71927638 original size:21 final size:20
Alignment explanation
Indices: 71927614--71927660 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
71927604 GGTCCCGCCT
71927614 AAGAAAGACGACGGCGGTGAA
1 AAGAAAGA-GACGGCGGTGAA
*
71927635 AAG-AA-AGACGGCGGAGAA
1 AAGAAAGAGACGGCGGTGAA
71927653 AAGAAAGA
1 AAGAAAGA
71927661 TGCCGGCGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 14 0.61
19 3 0.13
20 3 0.13
21 3 0.13
ACGTcount: A:0.51, C:0.11, G:0.36, T:0.02
Consensus pattern (20 bp):
AAGAAAGAGACGGCGGTGAA
Found at i:71927646 original size:18 final size:18
Alignment explanation
Indices: 71927623--71927660 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
71927613 TAAGAAAGAC
*
71927623 GACGGCGGTGAAAAGAAA
1 GACGGCGGAGAAAAGAAA
71927641 GACGGCGGAGAAAAGAAA
1 GACGGCGGAGAAAAGAAA
71927659 GA
1 GA
71927661 TGCCGGCGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.11, G:0.39, T:0.03
Consensus pattern (18 bp):
GACGGCGGAGAAAAGAAA
Found at i:71927949 original size:33 final size:33
Alignment explanation
Indices: 71927904--71927981 Score: 129
Period size: 33 Copynumber: 2.4 Consensus size: 33
71927894 ACATCAACAT
*
71927904 GAATCAAGGGTATATGTCTCATCCTGGGTATGC
1 GAATCAAGGGTATATGTCTCACCCTGGGTATGC
* *
71927937 GAGTCAAGGGTATATGTCTCACCCTGGGTATGT
1 GAATCAAGGGTATATGTCTCACCCTGGGTATGC
71927970 GAATCAAGGGTA
1 GAATCAAGGGTA
71927982 CATGGTGGAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (33 bp):
GAATCAAGGGTATATGTCTCACCCTGGGTATGC
Found at i:71931031 original size:29 final size:30
Alignment explanation
Indices: 71930998--71931061 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 30
71930988 ATTTTGATTC
*
71930998 TAATTAATAA-AAATATTTTTATCTATATT
1 TAATTAATAATAAATATTTATATCTATATT
*
71931027 TAATT-ATAATAAATATTTATATTTATATT
1 TAATTAATAATAAATATTTATATCTATATT
71931056 TAATTA
1 TAATTA
71931062 GAATTTTCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (30 bp):
TAATTAATAATAAATATTTATATCTATATT
Found at i:71934437 original size:76 final size:76
Alignment explanation
Indices: 71934311--71934464 Score: 272
Period size: 76 Copynumber: 2.0 Consensus size: 76
71934301 AGTATCAATG
* * *
71934311 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACATATTATTCTCCTATTTATGGGTTAGGAGAGTTT
1 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCCTATTTATGGGTCAGGAGAGATT
71934376 ATGAGTAATTT
66 ATGAGTAATTT
*
71934387 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCTTATTTATGGGTCAGGAGAGATT
1 TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCCTATTTATGGGTCAGGAGAGATT
71934452 ATGAGTAATTT
66 ATGAGTAATTT
71934463 TA
1 TA
71934465 AGTATTATCT
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (76 bp):
TAGGAGGAAATGGGTTTAAGTGCGCTAAAACACATTATTCTCCTATTTATGGGTCAGGAGAGATT
ATGAGTAATTT
Found at i:71936447 original size:36 final size:36
Alignment explanation
Indices: 71936381--71936454 Score: 114
Period size: 36 Copynumber: 2.1 Consensus size: 36
71936371 TTGAAGTAAA
*
71936381 ATTTATTTTTTATATTATAGTTAAATTTAAATGTAT
1 ATTTATTTTTTATATTATAGTTAAATTTAAATGAAT
*
71936417 ATTTTTTTTTATATATTATAGTTAAA-TTAAATGAAT
1 ATTTATTTTT-TATATTATAGTTAAATTTAAATGAAT
71936453 AT
1 AT
71936455 ATGAATCAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 20 0.57
37 15 0.43
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (36 bp):
ATTTATTTTTTATATTATAGTTAAATTTAAATGAAT
Found at i:71936953 original size:6 final size:6
Alignment explanation
Indices: 71936942--71936976 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
71936932 TTCTGGTCCT
71936942 TCCCAA TCCCAA TCCCAA TCCCAA TCCCAA TCCCA
1 TCCCAA TCCCAA TCCCAA TCCCAA TCCCAA TCCCA
71936977 TTCTCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.31, C:0.51, G:0.00, T:0.17
Consensus pattern (6 bp):
TCCCAA
Found at i:71937971 original size:15 final size:14
Alignment explanation
Indices: 71937947--71937986 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
71937937 ATATATATTT
71937947 TTTTAATTATTAAA
1 TTTTAATTATTAAA
*
71937961 TTTTAATTTATTATA
1 TTTTAA-TTATTAAA
*
71937976 TTTTAGTTATT
1 TTTTAATTATT
71937987 GTACCGTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (14 bp):
TTTTAATTATTAAA
Found at i:71938597 original size:22 final size:18
Alignment explanation
Indices: 71938548--71938588 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
71938538 TTACTGTTAA
*
71938548 AAAATACTTTTAAGAAAT
1 AAAATATTTTTAAGAAAT
71938566 AAAATATTTTTAAGAAAT
1 AAAATATTTTTAAGAAAT
71938584 AAAAT
1 AAAAT
71938589 GTCTATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (18 bp):
AAAATATTTTTAAGAAAT
Found at i:71939099 original size:66 final size:66
Alignment explanation
Indices: 71939018--71939150 Score: 248
Period size: 66 Copynumber: 2.0 Consensus size: 66
71939008 GTGTTTTTCA
* *
71939018 AAAGCACTTCTGAACAGTTAAAAATTTAAACCAAAAATAATTTGTGCTACTTTTAGAGCTAGAAG
1 AAAGCACTTCTGAACAGTTAAAAATTTAAACCAAAAATAATTTATACTACTTTTAGAGCTAGAAG
71939083 T
66 T
71939084 AAAGCACTTCTGAACAGTTAAAAATTTAAACCAAAAATAATTTATACTACTTTTAGAGCTAGAAG
1 AAAGCACTTCTGAACAGTTAAAAATTTAAACCAAAAATAATTTATACTACTTTTAGAGCTAGAAG
71939149 T
66 T
71939150 A
1 A
71939151 TTTTTTTTAA
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 65 1.00
ACGTcount: A:0.44, C:0.14, G:0.12, T:0.30
Consensus pattern (66 bp):
AAAGCACTTCTGAACAGTTAAAAATTTAAACCAAAAATAATTTATACTACTTTTAGAGCTAGAAG
T
Found at i:71941606 original size:21 final size:21
Alignment explanation
Indices: 71941552--71941606 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
71941542 CATTTTTTCA
71941552 GATTAAAA-ATAA-TATTTACC
1 GATTAAAATA-AATTATTTACC
* *
71941572 -A-TAATATTAATTATTTACC
1 GATTAAAATAAATTATTTACC
71941591 GATTAAAATAAATTAT
1 GATTAAAATAAATTAT
71941607 AGAATATCTG
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
18 6 0.22
19 9 0.33
20 1 0.04
21 11 0.41
ACGTcount: A:0.49, C:0.07, G:0.04, T:0.40
Consensus pattern (21 bp):
GATTAAAATAAATTATTTACC
Found at i:71953215 original size:25 final size:25
Alignment explanation
Indices: 71953181--71953231 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
71953171 CGCTCATCTA
*
71953181 AAGAAGCAGAATGGTTAAGAAATTT
1 AAGAAGCAGAAGGGTTAAGAAATTT
71953206 AAGAAGCAGAAGGGTTAAGAAATTT
1 AAGAAGCAGAAGGGTTAAGAAATTT
71953231 A
1 A
71953232 CTTTATGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.25, T:0.22
Consensus pattern (25 bp):
AAGAAGCAGAAGGGTTAAGAAATTT
Found at i:71956243 original size:5 final size:5
Alignment explanation
Indices: 71956235--71956276 Score: 61
Period size: 5 Copynumber: 8.6 Consensus size: 5
71956225 GATATTATGT
71956235 TATTA TATTA CTATTA TATTA TATTA TA-T- TATTA TATTA TAT
1 TATTA TATTA -TATTA TATTA TATTA TATTA TATTA TATTA TAT
71956277 AACATAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
3 2 0.06
4 2 0.06
5 25 0.74
6 5 0.15
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Found at i:71956275 original size:13 final size:13
Alignment explanation
Indices: 71956226--71956276 Score: 66
Period size: 13 Copynumber: 3.7 Consensus size: 13
71956216 TAAGTAAATG
*
71956226 ATATTATGTTATT
1 ATATTATATTATT
71956239 ATATTACTATTATATT
1 ATATTA-TA-T-TATT
71956255 ATATTATATTATT
1 ATATTATATTATT
71956268 ATATTATAT
1 ATATTATAT
71956277 AACATAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
13 19 0.56
14 2 0.06
15 3 0.09
16 10 0.29
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (13 bp):
ATATTATATTATT
Found at i:71962615 original size:26 final size:26
Alignment explanation
Indices: 71962584--71962665 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
71962574 TGAAATGCCC
71962584 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
71962610 ATCATGGAACATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
*
71962636 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
71962662 ATCA
1 ATCA
71962666 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:71965577 original size:15 final size:15
Alignment explanation
Indices: 71965554--71965596 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
71965544 TAATTGTGAT
*
71965554 TAAGATTTAATTAAC
1 TAAGGTTTAATTAAC
* *
71965569 TAAGGTTTAACTAAT
1 TAAGGTTTAATTAAC
71965584 TAAGG-TTAATTAA
1 TAAGGTTTAATTAA
71965597 GGTTTAATCT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 7 0.29
15 17 0.71
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.40
Consensus pattern (15 bp):
TAAGGTTTAATTAAC
Found at i:71970642 original size:76 final size:76
Alignment explanation
Indices: 71970484--71970634 Score: 241
Period size: 76 Copynumber: 2.0 Consensus size: 76
71970474 ACAGGATTTG
* * *
71970484 AGATTTACAATATCAAAATTTTTTATTACATAGTTATTATGCGAGTAATTTTTTTTATTTTAAAA
1 AGATTTACAATATCAAAATTTTTTATTACATAATTATCATGCGAGTAATTTTTTTAATTTTAAAA
* *
71970549 TATCACACTAA
66 TAACAAACTAA
*
71970560 AGATTTACAATATCAAAGTTTTTTATTACATAATTATCATGCGAGTAA-TTTTTTAATTTTAAAA
1 AGATTTACAATATCAAAATTTTTTATTACATAATTATCATGCGAGTAATTTTTTTAATTTTAAAA
71970624 TAACAAACTAA
66 TAACAAACTAA
71970635 CATATTTAAC
Statistics
Matches: 69, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
75 24 0.35
76 45 0.65
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (76 bp):
AGATTTACAATATCAAAATTTTTTATTACATAATTATCATGCGAGTAATTTTTTTAATTTTAAAA
TAACAAACTAA
Found at i:71970731 original size:25 final size:23
Alignment explanation
Indices: 71970684--71970742 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
71970674 ACTTAAATTT
71970684 TTAAATTTAAAAAAATAAAAAAA
1 TTAAATTTAAAAAAATAAAAAAA
**
71970707 TTAAATTCCTAAAAAAATATGAAAA
1 TTAAATT--TAAAAAAATAAAAAAA
*
71970732 CTAAA-TTAAAA
1 TTAAATTTAAAA
71970743 TGTATAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
22 5 0.16
23 7 0.23
24 1 0.03
25 18 0.58
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (23 bp):
TTAAATTTAAAAAAATAAAAAAA
Found at i:71971131 original size:13 final size:13
Alignment explanation
Indices: 71971113--71971137 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71971103 ACCTGTTCGT
71971113 ATTAATTTTTTAG
1 ATTAATTTTTTAG
71971126 ATTAATTTTTTA
1 ATTAATTTTTTA
71971138 TATAGAACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
ATTAATTTTTTAG
Found at i:71983326 original size:3 final size:3
Alignment explanation
Indices: 71983318--71983367 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
71983308 ATCACATGTT
71983318 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
71983366 TT
1 TT
71983368 TGGATGTAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:71983445 original size:72 final size:72
Alignment explanation
Indices: 71983368--71983623 Score: 503
Period size: 72 Copynumber: 3.6 Consensus size: 72
71983358 TATTATTATT
71983368 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
71983433 TTTTAAG
66 TTTTAAG
71983440 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
71983505 TTTTAAG
66 TTTTAAG
71983512 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
71983577 TTTTAAG
66 TTTTAAG
*
71983584 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTT
71983624 GTCAAGTTGT
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 183 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (72 bp):
TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
TTTTAAG
Found at i:71987847 original size:3 final size:3
Alignment explanation
Indices: 71987839--71987879 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
71987829 ATCACATGTT
71987839 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
71987880 TGGATGTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:71987961 original size:72 final size:72
Alignment explanation
Indices: 71987880--71988135 Score: 503
Period size: 72 Copynumber: 3.6 Consensus size: 72
71987870 TATTATTATT
71987880 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
71987945 TTTTAAG
66 TTTTAAG
71987952 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
71988017 TTTTAAG
66 TTTTAAG
71988024 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
71988089 TTTTAAG
66 TTTTAAG
*
71988096 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTT
71988136 GTCAAGTTGT
Statistics
Matches: 183, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 183 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.42
Consensus pattern (72 bp):
TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGTAGTAGGTGGTGATTTA
TTTTAAG
Found at i:71992288 original size:45 final size:45
Alignment explanation
Indices: 71992224--71992314 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
71992214 GACATTCTGA
71992224 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
1 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
71992269 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
1 ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
71992314 A
1 A
71992315 ATAATAAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.37
Consensus pattern (45 bp):
ACAGTAGTAGAACATGGTATACTTCATATTTGTATAGTTCTAAGT
Found at i:71993480 original size:15 final size:15
Alignment explanation
Indices: 71993460--71993489 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
71993450 TATTTTATTT
*
71993460 ATATTAGGATAATTA
1 ATATTAAGATAATTA
71993475 ATATTAAGATAATTA
1 ATATTAAGATAATTA
71993490 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:71993517 original size:27 final size:26
Alignment explanation
Indices: 71993456--71993518 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
71993446 ACTCTATTTT
71993456 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
71993483 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
71993511 ATTTTATT
1 ATTTTATT
71993519 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:71993925 original size:18 final size:18
Alignment explanation
Indices: 71993899--71993937 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
71993889 GGTCATTTAA
71993899 AAGCCGAGGATCGAACCC
1 AAGCCGAGGATCGAACCC
*
71993917 AAGCTGAGGATCGAACCC
1 AAGCCGAGGATCGAACCC
71993935 AAG
1 AAG
71993938 GTGGAATGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.36, C:0.28, G:0.28, T:0.08
Consensus pattern (18 bp):
AAGCCGAGGATCGAACCC
Found at i:72000265 original size:34 final size:34
Alignment explanation
Indices: 72000226--72000302 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
72000216 TAAAAAATTC
*
72000226 ATGTCTATACA-AACATATATCTATTTGGACGGTT
1 ATGTCTATA-AGAACATATATCTATTTGGACAGTT
* *
72000260 ATGTCTATAAGAAGATATATCTATTTGGCCAGTT
1 ATGTCTATAAGAACATATATCTATTTGGACAGTT
72000294 ATGTCTATA
1 ATGTCTATA
72000303 TGAAAGACAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
33 1 0.03
34 38 0.97
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (34 bp):
ATGTCTATAAGAACATATATCTATTTGGACAGTT
Found at i:72010685 original size:112 final size:112
Alignment explanation
Indices: 72010488--72010711 Score: 421
Period size: 112 Copynumber: 2.0 Consensus size: 112
72010478 GTTTTAAGCA
* *
72010488 TTATTGCATTCTTCTATTCTTTGTACTCTTGTCGATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
1 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
*
72010553 GAACCCTAGGATTGCATTGATTATTTATTTATACTGAAGTACACATC
66 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
72010600 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
1 TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
72010665 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
66 GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
72010712 GTTTTAGTTA
Statistics
Matches: 109, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
112 109 1.00
ACGTcount: A:0.23, C:0.21, G:0.15, T:0.42
Consensus pattern (112 bp):
TTATTGCATTCTGCTATTCTTTGTACTCTTGTCAATTGAGCTTGTCTGCCTCTCCCTTAAAATGT
GAACCCTAGGATTGCATTGATTATTTATTTATACGGAAGTACACATC
Found at i:72010912 original size:19 final size:19
Alignment explanation
Indices: 72010888--72010927 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
72010878 ATTATTGCAC
72010888 CAGATGATGATACGTTTTG
1 CAGATGATGATACGTTTTG
72010907 CAGATGATGATACGTTTTG
1 CAGATGATGATACGTTTTG
72010926 CA
1 CA
72010928 CTTTTGCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.35
Consensus pattern (19 bp):
CAGATGATGATACGTTTTG
Found at i:72012684 original size:26 final size:26
Alignment explanation
Indices: 72012648--72012704 Score: 105
Period size: 26 Copynumber: 2.2 Consensus size: 26
72012638 TGTCTGAAGG
72012648 AATATGTGTTGAACAAAAATGTTGCT
1 AATATGTGTTGAACAAAAATGTTGCT
*
72012674 AATATGTGTTGAACATAAATGTTGCT
1 AATATGTGTTGAACAAAAATGTTGCT
72012700 AATAT
1 AATAT
72012705 CATAGATACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.37
Consensus pattern (26 bp):
AATATGTGTTGAACAAAAATGTTGCT
Found at i:72028790 original size:17 final size:17
Alignment explanation
Indices: 72028753--72028793 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
72028743 TAATACTTTA
* *
72028753 AAAATTTTTAAAAATAT
1 AAAATTATTAAAAAAAT
72028770 -AAATTATTAAAAAAAT
1 AAAATTATTAAAAAAAT
72028786 AAAATTAT
1 AAAATTAT
72028794 ATTTTTACGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AAAATTATTAAAAAAAT
Found at i:72030402 original size:16 final size:17
Alignment explanation
Indices: 72030371--72030403 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
72030361 ATAATAATTA
*
72030371 TATTTATTCTAAATATT
1 TATTTATTCAAAATATT
72030388 TATTTATT-AAAATATT
1 TATTTATTCAAAATATT
72030404 ACATATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTTATTCAAAATATT
Found at i:72030960 original size:16 final size:18
Alignment explanation
Indices: 72030933--72030966 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
72030923 TGCAATTGTA
72030933 TATATAAATTTTA-ATTT
1 TATATAAATTTTATATTT
72030950 TATAT-AATTTTATATTT
1 TATATAAATTTTATATTT
72030967 AAATTTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TATATAAATTTTATATTT
Found at i:72031408 original size:9 final size:9
Alignment explanation
Indices: 72031388--72031422 Score: 54
Period size: 10 Copynumber: 3.9 Consensus size: 9
72031378 TGGTTGAATC
72031388 TTTAAAAA-
1 TTTAAAAAT
72031396 TTTAAAAAT
1 TTTAAAAAT
72031405 TTTAAAAATT
1 TTTAAAAA-T
72031415 TTTAAAAA
1 TTTAAAAA
72031423 AATTAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
8 8 0.32
9 8 0.32
10 9 0.36
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TTTAAAAAT
Found at i:72034240 original size:2 final size:2
Alignment explanation
Indices: 72034235--72034277 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
72034225 CTCTTTCTTT
72034235 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
72034277 T
1 T
72034278 ATATGTGATG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:72039045 original size:19 final size:18
Alignment explanation
Indices: 72039005--72039045 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
72038995 TAAAATAACT
72039005 TTTTAGACATTTTAAAAA
1 TTTTAGACATTTTAAAAA
72039023 -TTTAG-CATTATCTAAAAA
1 TTTTAGACATT-T-TAAAAA
72039041 TTTTA
1 TTTTA
72039046 TTGAAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 4 0.20
17 6 0.30
18 6 0.30
19 4 0.20
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.46
Consensus pattern (18 bp):
TTTTAGACATTTTAAAAA
Found at i:72047029 original size:20 final size:19
Alignment explanation
Indices: 72046992--72047030 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
72046982 AAAACTTGAA
*
72046992 AAAATATTAACATAAAATT
1 AAAATATTAAAATAAAATT
*
72047011 AAAATATCTAAAATTAAATT
1 AAAATAT-TAAAATAAAATT
72047031 TTCTTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATATTAAAATAAAATT
Found at i:72052644 original size:19 final size:18
Alignment explanation
Indices: 72052615--72052696 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 18
72052605 AATGGATAAA
72052615 TTTAGATAATTTTTAATATT
1 TTTA-ATAATTTTT-ATATT
*
72052635 TTTAATAA-TTTCATAATTT
1 TTTAATAATTTTTAT-A-TT
* *
72052654 TTTTATAAATTTTATATT
1 TTTAATAATTTTTATATT
*
72052672 TTTAATAATGATTTATATT
1 TTTAATAAT-TTTTATATT
72052691 TTTAAT
1 TTTAAT
72052697 TTTTAAACTA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
17 2 0.04
18 13 0.25
19 28 0.54
20 9 0.17
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.61
Consensus pattern (18 bp):
TTTAATAATTTTTATATT
Found at i:72055611 original size:30 final size:31
Alignment explanation
Indices: 72055570--72055639 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
72055560 TATATATAGA
*
72055570 CTAAATAAAATAGTAAAAT-AATAA-AAATAT
1 CTAATTAAAATA-TAAAATAAATAATAAATAT
* * *
72055600 CTTATTAAAATATTAAATAAATAATAATTAT
1 CTAATTAAAATATAAAATAAATAATAAATAT
72055631 CTAATTAAA
1 CTAATTAAA
72055640 TAATTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 5 0.15
30 15 0.45
31 13 0.39
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.34
Consensus pattern (31 bp):
CTAATTAAAATATAAAATAAATAATAAATAT
Found at i:72055652 original size:30 final size:31
Alignment explanation
Indices: 72055583--72055652 Score: 72
Period size: 31 Copynumber: 2.2 Consensus size: 31
72055573 AATAAAATAG
*
72055583 TAAAATAATAAAAATATCTTATTAAAATATTA
1 TAAAATAAT-AAAATATCTAATTAAAATATTA
* *
72055615 AATAAATAAT-AATTATCTAATT-AAATAATTA
1 TA-AAATAATAAAATATCTAATTAAAAT-ATTA
72055646 TAAAATA
1 TAAAATA
72055653 TCACCAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
30 9 0.28
31 15 0.47
32 1 0.03
33 7 0.22
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (31 bp):
TAAAATAATAAAATATCTAATTAAAATATTA
Found at i:72056520 original size:30 final size:30
Alignment explanation
Indices: 72056479--72056542 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
72056469 GAAAAATCAA
* * *
72056479 ATATTGGATCTTCCTAAGCTCTTAAACAAG
1 ATATTGAATCTTCCCAAGCTCCTAAACAAG
*
72056509 ATATTGAATCTTCCCAAGCTCCTAAACGAG
1 ATATTGAATCTTCCCAAGCTCCTAAACAAG
72056539 ATAT
1 ATAT
72056543 CTAGTTTTCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.31
Consensus pattern (30 bp):
ATATTGAATCTTCCCAAGCTCCTAAACAAG
Found at i:72059675 original size:46 final size:46
Alignment explanation
Indices: 72059623--72059793 Score: 254
Period size: 46 Copynumber: 3.7 Consensus size: 46
72059613 GTGTGTTCTC
**
72059623 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
*
72059669 TGATATGAAATGAATAAGACTATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* *
72059715 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
* * *
72059761 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 TGATATG-AAATGAATAAGACCATGGTTGAAAGA
72059794 CACTATGGTA
Statistics
Matches: 114, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
45 1 0.01
46 113 0.99
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:72062432 original size:37 final size:37
Alignment explanation
Indices: 72062369--72062440 Score: 85
Period size: 37 Copynumber: 1.9 Consensus size: 37
72062359 TACACTTTCT
**
72062369 CAATTCAATATACATTTCAATTATTCACATA-TAATCA
1 CAATTCAATATACATTTCAACAATTCA-ATACTAATCA
*
72062406 CAATTCAATTTA-ATTTCATACAATTCAATACTAAT
1 CAATTCAATATACATTTCA-ACAATTCAATACTAAT
72062441 ACTTACCATG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
36 9 0.30
37 21 0.70
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (37 bp):
CAATTCAATATACATTTCAACAATTCAATACTAATCA
Found at i:72062809 original size:17 final size:18
Alignment explanation
Indices: 72062775--72062810 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
72062765 TGAATTTCTA
72062775 TCCAATTTATACCCTAAT
1 TCCAATTTATACCCTAAT
*
72062793 TCCAATTTA-ATCCTAAT
1 TCCAATTTATACCCTAAT
72062810 T
1 T
72062811 AACTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (18 bp):
TCCAATTTATACCCTAAT
Found at i:72063277 original size:17 final size:18
Alignment explanation
Indices: 72063250--72063293 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
72063240 CCTTCATTTC
72063250 TTTCTTTTATTCTTTTA-G
1 TTTC-TTTATTCTTTTATG
72063268 TTTCTTTATTCTTTTATG
1 TTTCTTTATTCTTTTATG
*
72063286 TTTATTTA
1 TTTCTTTA
72063294 CTTTATTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTCTTTATTCTTTTATG
Found at i:72063306 original size:23 final size:23
Alignment explanation
Indices: 72063263--72063306 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
72063253 CTTTTATTCT
**
72063263 TTTAGTTTCTTTATTCTTTTATG
1 TTTAGTTTCTTTATTAATTTATG
72063286 TTTA-TTTACTTTATTAATTTA
1 TTTAGTTT-CTTTATTAATTTA
72063307 ATAATAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (23 bp):
TTTAGTTTCTTTATTAATTTATG
Found at i:72063343 original size:18 final size:18
Alignment explanation
Indices: 72063302--72063350 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
72063292 TACTTTATTA
72063302 ATTTAATAAT-AATA-AT
1 ATTTAATAATAAATATAT
*
72063318 -TTTTATAATAAATATAT
1 ATTTAATAATAAATATAT
*
72063335 ATTTAATAACAAATAT
1 ATTTAATAATAAATAT
72063351 TTATATTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 8 0.30
16 4 0.15
17 2 0.07
18 13 0.48
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTTAATAATAAATATAT
Found at i:72063477 original size:8 final size:8
Alignment explanation
Indices: 72063464--72063506 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
72063454 TTAATTTACT
72063464 TAATAATA
1 TAATAATA
72063472 TAATAATA
1 TAATAATA
72063480 TAAT-AT-
1 TAATAATA
72063486 TAAT--TA
1 TAATAATA
72063492 -AATAATA
1 TAATAATA
72063499 TAATAATA
1 TAATAATA
72063507 ACTTAATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
5 4 0.13
6 4 0.13
7 4 0.13
8 19 0.61
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAATAATA
Found at i:72063495 original size:19 final size:20
Alignment explanation
Indices: 72063473--72063517 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
72063463 TTAATAATAT
*
72063473 AATAATATAATATTAA-TTA
1 AATAATATAATAATAACTTA
72063492 AATAATATAATAATAACTTA
1 AATAATATAATAATAACTTA
*
72063512 ATTAAT
1 AATAAT
72063518 GGATAAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (20 bp):
AATAATATAATAATAACTTA
Found at i:72067176 original size:19 final size:19
Alignment explanation
Indices: 72067124--72067169 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
72067114 TTTAATTTTA
*
72067124 ATTTTATGTA-TACTATTAT
1 ATTTTAT-TACTATTATTAT
72067143 ATTTTATTACTATTATTAT
1 ATTTTATTACTATTATTAT
72067162 A-TTTATTA
1 ATTTTATTA
72067170 TTTATTAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTTTATTACTATTATTAT
Found at i:72067662 original size:27 final size:29
Alignment explanation
Indices: 72067618--72067672 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 29
72067608 TATACGTTCT
72067618 TATTATTACTATATCTATTATT-TATTAG
1 TATTATTACTATATCTATTATTGTATTAG
72067646 TATT-TTACTAT-TACTATTATTGTATTA
1 TATTATTACTATAT-CTATTATTGTATTA
72067673 TTTTTTAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 1 0.04
27 15 0.60
28 9 0.36
ACGTcount: A:0.31, C:0.07, G:0.04, T:0.58
Consensus pattern (29 bp):
TATTATTACTATATCTATTATTGTATTAG
Found at i:72067749 original size:27 final size:26
Alignment explanation
Indices: 72067718--72067784 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
72067708 TTTTTAATAC
72067718 TATATTTTTAATACCATATATATTG-TG
1 TATATTTTTAATA-C-TATATATTGATG
*
72067745 TATATTCTTAATACTATATATTGTATG
1 TATATTTTTAATACTATATATTG-ATG
*
72067772 TATTTTTTTAATA
1 TATATTTTTAATA
72067785 ATTGTATTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 9 0.26
26 1 0.03
27 25 0.71
ACGTcount: A:0.33, C:0.06, G:0.06, T:0.55
Consensus pattern (26 bp):
TATATTTTTAATACTATATATTGATG
Found at i:72067775 original size:25 final size:27
Alignment explanation
Indices: 72067718--72067775 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
72067708 TTTTTAATAC
* *
72067718 TATATTTTTAATACCATATATATTGTG
1 TATATTCTTAATACCATATATATTGTA
72067745 TATATTCTTAATA-C-TATATATTGTA
1 TATATTCTTAATACCATATATATTGTA
*
72067770 TGTATT
1 TATATT
72067776 TTTTTAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 15 0.54
26 1 0.04
27 12 0.43
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (27 bp):
TATATTCTTAATACCATATATATTGTA
Found at i:72067828 original size:20 final size:21
Alignment explanation
Indices: 72067803--72067894 Score: 66
Period size: 22 Copynumber: 4.3 Consensus size: 21
72067793 ATATGTATAT
*
72067803 ATATTATGTACGTA-TTTTTA
1 ATATTATGTACATATTTTTTA
*
72067823 ATATTAT-TATATATTTTTTA
1 ATATTATGTACATATTTTTTA
** *
72067843 ATATATATGTGTATATTTATGTA
1 ATAT-TATGTACATATTT-TTTA
72067866 ATATTAT-TA-ATAGTTGTTTTTA
1 ATATTATGTACATA--T-TTTTTA
72067888 ATATTAT
1 ATATTAT
72067895 TATTTCTAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
19 4 0.07
20 20 0.34
21 4 0.07
22 22 0.37
23 9 0.15
ACGTcount: A:0.34, C:0.01, G:0.08, T:0.58
Consensus pattern (21 bp):
ATATTATGTACATATTTTTTA
Found at i:72067941 original size:20 final size:21
Alignment explanation
Indices: 72067916--72067958 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
72067906 TGTATATATC
72067916 ATGTATATA-TTTTTAATACT
1 ATGTATATACTTTTTAATACT
72067936 ATGTATATACTTTTTAATACT
1 ATGTATATACTTTTTAATACT
72067957 AT
1 AT
72067959 TATTATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (21 bp):
ATGTATATACTTTTTAATACT
Found at i:72070343 original size:22 final size:23
Alignment explanation
Indices: 72070317--72070370 Score: 69
Period size: 23 Copynumber: 2.4 Consensus size: 23
72070307 TAAAATAAAA
*
72070317 TTAAAAAAT-TGAT-AAATA-TT
1 TTAAAAAATATAATAAAATATTT
72070337 TTATAAAAATATAATAAAATATTT
1 TTA-AAAAATATAATAAAATATTT
72070361 TTAAAAAATA
1 TTAAAAAATA
72070371 CGTGATAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 3 0.10
21 6 0.21
22 3 0.10
23 12 0.41
24 5 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (23 bp):
TTAAAAAATATAATAAAATATTT
Done.