Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 235 of 259
Found at i:73691840 original size:24 final size:23
Alignment explanation
Indices: 73691813--73691858 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
73691803 ATAATTAAAT
* *
73691813 TAATTAATTTTAAATAAATTTATG
1 TAATTAA-TGTAAATAAAATTATG
73691837 TAATTAATGTAAATAAAATTAT
1 TAATTAATGTAAATAAAATTAT
73691859 TAAAAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (23 bp):
TAATTAATGTAAATAAAATTATG
Found at i:73691841 original size:20 final size:20
Alignment explanation
Indices: 73691796--73691832 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
73691786 GAGAATTGAT
*
73691796 TTAATTTATAATTAAATTAA
1 TTAATTTATAAATAAATTAA
73691816 TTAATTT-TAAATAAATT
1 TTAATTTATAAATAAATT
73691833 TATGTAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TTAATTTATAAATAAATTAA
Found at i:73692885 original size:21 final size:21
Alignment explanation
Indices: 73692859--73692901 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73692849 GAGGTGACGG
73692859 AGTACTGCTTTTTTCACTTTT
1 AGTACTGCTTTTTTCACTTTT
73692880 AGTACTGCTTTTTTCACTTTT
1 AGTACTGCTTTTTTCACTTTT
73692901 A
1 A
73692902 CATCTAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.16, C:0.19, G:0.09, T:0.56
Consensus pattern (21 bp):
AGTACTGCTTTTTTCACTTTT
Found at i:73694390 original size:24 final size:24
Alignment explanation
Indices: 73694358--73694410 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
73694348 AACAGCCCAA
73694358 TTGTTGACCTTCGATTTCATTATT
1 TTGTTGACCTTCGATTTCATTATT
73694382 TTGTTGACCTTCGATTTCATTATT
1 TTGTTGACCTTCGATTTCATTATT
73694406 TTGTT
1 TTGTT
73694411 CTGAAAAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.15, C:0.15, G:0.13, T:0.57
Consensus pattern (24 bp):
TTGTTGACCTTCGATTTCATTATT
Found at i:73697868 original size:5 final size:5
Alignment explanation
Indices: 73697858--73697882 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
73697848 AATAATTAAG
73697858 TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT
73697883 ATAAAAGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:73705301 original size:39 final size:39
Alignment explanation
Indices: 73705194--73705328 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
73705184 GACCTCGAGT
* * *
73705194 CGATGAGACACTGGGTGTC-ACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCAAC--TATTACTTCGGCTAG-TC
** ** *
73705235 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
*
73705273 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAACTATTACTTCG-GCTAGTC
*
73705312 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
73705329 CCATATTGGT
Statistics
Matches: 76, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
38 19 0.25
39 36 0.47
40 4 0.05
41 15 0.20
42 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAACTATTACTTCGGCTAGTC
Found at i:73715149 original size:33 final size:33
Alignment explanation
Indices: 73715111--73715177 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
73715101 ATAATTAAGT
73715111 TATTCAAGAGGTTAGGGTAGATTATATTGGTGG
1 TATTCAAGAGGTTAGGGTAGATTATATTGGTGG
73715144 TATTCAAGAGGTTAGGGTAGATTATATTGGTGG
1 TATTCAAGAGGTTAGGGTAGATTATATTGGTGG
73715177 T
1 T
73715178 TAATACCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.27, C:0.03, G:0.33, T:0.37
Consensus pattern (33 bp):
TATTCAAGAGGTTAGGGTAGATTATATTGGTGG
Found at i:73719530 original size:15 final size:15
Alignment explanation
Indices: 73719499--73719542 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
73719489 TTCTTCTTCT
73719499 TCTTCTACTTCTTTA
1 TCTTCTACTTCTTTA
*
73719514 TCTTCTA-TTGTTATA
1 TCTTCTACTTCTT-TA
*
73719529 TCTTCTTCTTCTTT
1 TCTTCTACTTCTTT
73719543 TCCTCTCTCT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.11, C:0.23, G:0.02, T:0.64
Consensus pattern (15 bp):
TCTTCTACTTCTTTA
Found at i:73719568 original size:11 final size:11
Alignment explanation
Indices: 73719552--73719577 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73719542 TTCCTCTCTC
73719552 TTTTTTTTTTA
1 TTTTTTTTTTA
73719563 TTTTTTTTTTA
1 TTTTTTTTTTA
73719574 TTTT
1 TTTT
73719578 GCAAAGGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:73719706 original size:21 final size:21
Alignment explanation
Indices: 73719680--73719719 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
73719670 TAAGAACTTA
73719680 ACCAACTACAGCAAAAGCTTC
1 ACCAACTACAGCAAAAGCTTC
73719701 ACCAACTACAGCAAAAGCT
1 ACCAACTACAGCAAAAGCT
73719720 ATTCAAGATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.33, G:0.10, T:0.12
Consensus pattern (21 bp):
ACCAACTACAGCAAAAGCTTC
Found at i:73726153 original size:6 final size:6
Alignment explanation
Indices: 73726142--73726171 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
73726132 TGCTATGTCC
73726142 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
73726172 TCCTTTTAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:73726891 original size:31 final size:31
Alignment explanation
Indices: 73726853--73726911 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
73726843 TACATCCAAG
*
73726853 TGACTTAAAT-AGAAATTTTTAAATAATTCAA
1 TGACTTAAATGA-AAACTTTTAAATAATTCAA
*
73726884 TGACTTAAATGAAAACTTTTGAATAATT
1 TGACTTAAATGAAAACTTTTAAATAATT
73726912 TAGTGATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (31 bp):
TGACTTAAATGAAAACTTTTAAATAATTCAA
Found at i:73728577 original size:21 final size:21
Alignment explanation
Indices: 73728551--73728593 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
73728541 GCATGTTAGA
73728551 TAGTTCCTTTTAGTACACTGG
1 TAGTTCCTTTTAGTACACTGG
73728572 TAGTTCCTTTTAGTACACTGG
1 TAGTTCCTTTTAGTACACTGG
73728593 T
1 T
73728594 TGCAACCTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (21 bp):
TAGTTCCTTTTAGTACACTGG
Found at i:73732881 original size:15 final size:14
Alignment explanation
Indices: 73732842--73732889 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 14
73732832 ATTAACAACA
73732842 TTTAGATTA-TTTAT
1 TTTA-ATTATTTTAT
73732856 TTTAA-TATTTTAAT
1 TTTAATTATTTT-AT
73732870 TTTAATTATTTTGAT
1 TTTAATTATTTT-AT
73732885 TTTAA
1 TTTAA
73732890 AATATTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
12 2 0.07
13 4 0.13
14 11 0.37
15 13 0.43
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (14 bp):
TTTAATTATTTTAT
Found at i:73733137 original size:21 final size:21
Alignment explanation
Indices: 73733113--73733172 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
73733103 CGTTATTTTT
* *
73733113 AATCTCACCGCTACAGTATTC
1 AATCTCACCGCTACAATATCC
*
73733134 AATCTCATCGCTACAATATCC
1 AATCTCACCGCTACAATATCC
* *
73733155 AATCTGACCACTACAATA
1 AATCTCACCGCTACAATA
73733173 ATTAATTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.35, C:0.32, G:0.07, T:0.27
Consensus pattern (21 bp):
AATCTCACCGCTACAATATCC
Found at i:73734094 original size:33 final size:34
Alignment explanation
Indices: 73734052--73734119 Score: 95
Period size: 34 Copynumber: 2.0 Consensus size: 34
73734042 ATAAGTTTAA
*
73734052 TTATTATTTAATAT-AA-AATAATTTAAATATATT
1 TTATTATTTAATATGAACAA-AATTTAAAAATATT
*
73734085 TTATTATTTATTATGAACAAAATTTAAAAATATT
1 TTATTATTTAATATGAACAAAATTTAAAAATATT
73734119 T
1 T
73734120 AAATTTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
33 13 0.42
34 16 0.52
35 2 0.06
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (34 bp):
TTATTATTTAATATGAACAAAATTTAAAAATATT
Found at i:73734365 original size:13 final size:13
Alignment explanation
Indices: 73734339--73734410 Score: 78
Period size: 13 Copynumber: 5.6 Consensus size: 13
73734329 TTAGGGCCAG
73734339 TTTGAAAA-TGCT
1 TTTGAAAAGTGCT
73734351 TTTGAAAAGTGCT
1 TTTGAAAAGTGCT
73734364 TTTGAAAAGTGC-
1 TTTGAAAAGTGCT
*
73734376 TGTGAAAAAGTG-T
1 TTTG-AAAAGTGCT
* *
73734389 TATAGAAAAATGCT
1 T-TTGAAAAGTGCT
73734403 TTTGAAAA
1 TTTGAAAA
73734411 ATTTAAATGT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
12 11 0.22
13 36 0.72
14 3 0.06
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.35
Consensus pattern (13 bp):
TTTGAAAAGTGCT
Found at i:73735689 original size:55 final size:55
Alignment explanation
Indices: 73735605--73735709 Score: 174
Period size: 55 Copynumber: 1.9 Consensus size: 55
73735595 ACGTGAGTTT
* **
73735605 GAGTGCGCTGAAACTTATTATCCTCTTATTTATAAATTGAGGAAGGATTAAATTC
1 GAGTGCACTGAAACCGATTATCCTCTTATTTATAAATTGAGGAAGGATTAAATTC
*
73735660 GAGTGCACTGAAACCGATTATCCTCTTATTTATAAATTGAGGAGGGATTA
1 GAGTGCACTGAAACCGATTATCCTCTTATTTATAAATTGAGGAAGGATTA
73735710 TATCAAAATA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
55 46 1.00
ACGTcount: A:0.32, C:0.13, G:0.20, T:0.34
Consensus pattern (55 bp):
GAGTGCACTGAAACCGATTATCCTCTTATTTATAAATTGAGGAAGGATTAAATTC
Found at i:73738843 original size:36 final size:36
Alignment explanation
Indices: 73738801--73738870 Score: 104
Period size: 36 Copynumber: 1.9 Consensus size: 36
73738791 GGAAAAGTTA
* * *
73738801 ATAGTTGTTAATTTTGCTGATGTGTCATATATGTGG
1 ATAGTTGTAAATTTTGCTGACGTGTCATACATGTGG
*
73738837 ATAGTTGTAAATTTTGTTGACGTGTCATACATGT
1 ATAGTTGTAAATTTTGCTGACGTGTCATACATGT
73738871 AGATTGTCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.24, C:0.07, G:0.23, T:0.46
Consensus pattern (36 bp):
ATAGTTGTAAATTTTGCTGACGTGTCATACATGTGG
Found at i:73738960 original size:16 final size:16
Alignment explanation
Indices: 73738935--73738987 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 16
73738925 AATATGATAA
73738935 TATTTATTTTTAATTT
1 TATTTATTTTTAATTT
73738951 T-TTATATTTTTAATAATT
1 TATT-TATTTTTAAT--TT
73738969 TAATTTATTTTTAATTT
1 T-ATTTATTTTTAATTT
73738986 TA
1 TA
73738988 AAAATATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 2 0.06
16 12 0.38
17 3 0.09
18 3 0.09
19 10 0.31
20 2 0.06
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TATTTATTTTTAATTT
Found at i:73743873 original size:10 final size:10
Alignment explanation
Indices: 73743860--73744022 Score: 51
Period size: 9 Copynumber: 16.5 Consensus size: 10
73743850 AAAAGATGAT
73743860 AAAATTATAAAA
1 AAAATTAT--AA
73743872 AAAATTAT-A
1 AAAATTATAA
73743881 AAAA-TATAA
1 AAAATTATAA
*
73743890 TAAAATAAT-A
1 -AAAATTATAA
*
73743900 AAAATTATTA
1 AAAATTATAA
*
73743910 AAACTT-TAGA
1 AAAATTATA-A
*
73743920 GAAAA-TATCAT
1 -AAAATTAT-AA
73743931 AAAA-TATAA
1 AAAATTATAA
* *
73743940 AAAGTTAT-T
1 AAAATTATAA
*
73743949 AAAAGTATAGA
1 AAAATTATA-A
*
73743960 AAAGTTATAA
1 AAAATTATAA
*
73743970 AAAA-TATTAT
1 AAAATTA-TAA
*
73743980 AAAA-TATCA
1 AAAATTATAA
* *
73743989 AACA-TATAG
1 AAAATTATAA
*
73743998 AAAATTAT-T
1 AAAATTATAA
73744007 AAAATTATAA
1 AAAATTATAA
73744017 ATAAAT
1 A-AAAT
73744023 AAATAAAGAG
Statistics
Matches: 112, Mismatches: 24, Indels: 31
0.67 0.14 0.19
Matches are distributed among these distances:
8 3 0.03
9 44 0.39
10 39 0.35
11 17 0.15
12 9 0.08
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (10 bp):
AAAATTATAA
Found at i:73743877 original size:12 final size:12
Alignment explanation
Indices: 73743860--73743884 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
73743850 AAAAGATGAT
73743860 AAAATTATAAAA
1 AAAATTATAAAA
73743872 AAAATTATAAAA
1 AAAATTATAAAA
73743884 A
1 A
73743885 TATAATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
AAAATTATAAAA
Found at i:73743904 original size:40 final size:39
Alignment explanation
Indices: 73743860--73743952 Score: 98
Period size: 40 Copynumber: 2.3 Consensus size: 39
73743850 AAAAGATGAT
*
73743860 AAAATTATAAAAAAAATTATA-AAAATATAATAAAATAATA
1 AAAATTAT-AAAAAAATTAGAGAAAATATAATAAAAT-ATA
* ** *
73743900 AAAATTATTAAAACTTTAGAGAAAATATCATAAAATATA
1 AAAATTATAAAAAAATTAGAGAAAATATAATAAAATATA
*
73743939 AAAAGTTATTAAAA
1 AAAA-TTATAAAAA
73743953 GTATAGAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 15 0.33
40 31 0.67
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (39 bp):
AAAATTATAAAAAAATTAGAGAAAATATAATAAAATATA
Found at i:73743952 original size:58 final size:55
Alignment explanation
Indices: 73743871--73744017 Score: 136
Period size: 58 Copynumber: 2.5 Consensus size: 55
73743861 AAATTATAAA
* * *
73743871 AAAAATTATAAAAATATAATAAAATAATAAAAA-TTATTAAAACT-TTAGAGAAAATATC
1 AAAAA-TATAAAAAT-TATTAAAAT-ATAAAAAGTTATAAAAAATATT--AGAAAATATC
*
73743929 ATAAAATATAAAAAGTTATTAAAAGTATAGAAAAGTTATAAAAAATATTATAAAATATC
1 A-AAAATATAAAAA-TTATTAAAA-TATA-AAAAGTTATAAAAAATATTAGAAAATATC
*
73743988 AAACATATAGAAAATTATTAAAATTATAAA
1 AAAAATATA-AAAATTATTAAAA-TATAAA
73744018 TAAATAAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 15
0.78 0.06 0.15
Matches are distributed among these distances:
57 2 0.03
58 39 0.51
59 24 0.32
60 9 0.12
61 2 0.03
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.30
Consensus pattern (55 bp):
AAAAATATAAAAATTATTAAAATATAAAAAGTTATAAAAAATATTAGAAAATATC
Found at i:73743968 original size:11 final size:10
Alignment explanation
Indices: 73743935--73743972 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
73743925 TATCATAAAA
73743935 TATAAAAAGT
1 TATAAAAAGT
*
73743945 TATTAAAAG-
1 TATAAAAAGT
73743954 TATAGAAAAGT
1 TATA-AAAAGT
73743965 TATAAAAA
1 TATAAAAA
73743973 ATATTATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
9 3 0.12
10 17 0.71
11 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (10 bp):
TATAAAAAGT
Found at i:73743970 original size:19 final size:17
Alignment explanation
Indices: 73743929--73743971 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 17
73743919 AGAAAATATC
73743929 ATAAAATATAAAAAGTT
1 ATAAAATATAAAAAGTT
73743946 ATTAAAAGTATAGAAAAGTT
1 A-TAAAA-TATA-AAAAGTT
73743966 ATAAAA
1 ATAAAA
73743972 AATATTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 1 0.04
18 5 0.22
19 9 0.39
20 8 0.35
ACGTcount: A:0.63, C:0.00, G:0.09, T:0.28
Consensus pattern (17 bp):
ATAAAATATAAAAAGTT
Found at i:73743984 original size:49 final size:48
Alignment explanation
Indices: 73743826--73744023 Score: 129
Period size: 49 Copynumber: 4.0 Consensus size: 48
73743816 TATTTTTAAG
* * * *
73743826 ATTATAAAAAATTATTAAATCAAT-AAAAG-ATGATAAAATTATAAAAAAA
1 ATTATAAAATATAATAAAAT-AATAAAAAGTATG--AAAATTATAAAAAAT
* *
73743875 ATTATAAAAATATAATAAAATAATAAAAATTATTAAAACTT-TAGAGAAAAT
1 ATTAT-AAAATATAATAAAATAATAAAAAGTATGAAAA-TTATA-A-AAAAT
* * * *
73743926 ATCATAAAATATAA-AAAGTTATTAAAAGTATAGAAAAGTTATAAAAAAT
1 ATTATAAAATATAATAAAATAATAAAAAGTAT-GAAAA-TTATAAAAAAT
* * * *
73743975 ATTATAAAATATCA-AACAT-ATAGAAAATTATTAAAATTATAAATAAAT
1 ATTATAAAATATAATAAAATAATA-AAAAGTATGAAAATTATAAA-AAAT
73744023 A
1 A
73744024 AATAAAGAGT
Statistics
Matches: 119, Mismatches: 20, Indels: 21
0.74 0.12 0.13
Matches are distributed among these distances:
47 7 0.06
48 11 0.09
49 54 0.45
50 35 0.29
51 12 0.10
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.30
Consensus pattern (48 bp):
ATTATAAAATATAATAAAATAATAAAAAGTATGAAAATTATAAAAAAT
Found at i:73744446 original size:16 final size:16
Alignment explanation
Indices: 73744427--73744466 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
73744417 TTTTAAAGTA
73744427 TATT-TTTTATATTTTT
1 TATTATTTTA-ATTTTT
73744443 TATTATTTTAA-TTTT
1 TATTATTTTAATTTTT
73744458 TATTATTTT
1 TATTATTTT
73744467 TGCCTCGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 13 0.57
16 5 0.22
17 5 0.22
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.78
Consensus pattern (16 bp):
TATTATTTTAATTTTT
Found at i:73744525 original size:10 final size:10
Alignment explanation
Indices: 73744512--73744582 Score: 72
Period size: 10 Copynumber: 7.2 Consensus size: 10
73744502 CTTTAAAATC
73744512 TATATTTTTT
1 TATATTTTTT
* *
73744522 TATATATATT
1 TATATTTTTT
*
73744532 TATATTTTAT
1 TATATTTTTT
*
73744542 TATAATTTTT
1 TATATTTTTT
73744552 TATATTTTTT
1 TATATTTTTT
* *
73744562 AATA-TTTTA
1 TATATTTTTT
*
73744571 TATACTTTTT
1 TATATTTTTT
73744581 TA
1 TA
73744583 AAATCTTAAT
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
9 7 0.15
10 41 0.85
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (10 bp):
TATATTTTTT
Found at i:73744537 original size:20 final size:19
Alignment explanation
Indices: 73744512--73744627 Score: 77
Period size: 20 Copynumber: 6.3 Consensus size: 19
73744502 CTTTAAAATC
73744512 TATATTTTTTTATATATATT
1 TATATTTTTTTATATAT-TT
*
73744532 TATATTTTATTATA-ATTT
1 TATATTTTTTTATATATTT
*
73744550 TTTATATTTTTTA-ATATTT
1 TATAT-TTTTTTATATATTT
* *
73744569 TATATACTTTTTTA-AAATCT
1 TATAT--TTTTTTATATATTT
73744589 TA-A-TTTTTTA-ATATTT
1 TATATTTTTTTATATATTT
* **
73744605 AATAAATTTTTA-ATATTT
1 TATATTTTTTTATATATTT
73744623 T-TATT
1 TATATT
73744628 ATATTTATTC
Statistics
Matches: 77, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
16 12 0.16
17 3 0.04
18 19 0.25
19 17 0.22
20 26 0.34
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
TATATTTTTTTATATATTT
Found at i:73744551 original size:30 final size:29
Alignment explanation
Indices: 73744512--73744582 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 29
73744502 CTTTAAAATC
*
73744512 TATATTTTTTTATATATATTT-ATATTTTA
1 TATAATTTTTTATAT-TATTTAATATTTTA
*
73744541 TTATAATTTTTTATATTTTTTAATATTTTA
1 -TATAATTTTTTATATTATTTAATATTTTA
*
73744571 TATACTTTTTTA
1 TATAATTTTTTA
73744583 AAATCTTAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
29 15 0.41
30 22 0.59
ACGTcount: A:0.30, C:0.01, G:0.00, T:0.69
Consensus pattern (29 bp):
TATAATTTTTTATATTATTTAATATTTTA
Found at i:73744610 original size:26 final size:28
Alignment explanation
Indices: 73744560--73744634 Score: 75
Period size: 26 Copynumber: 2.7 Consensus size: 28
73744550 TTTATATTTT
**
73744560 TTAATA-TTTTATATACTTTTTTAAAATC
1 TTAATATTTTTATATA-TTTAATAAAATC
* *
73744588 TTAAT-TTTTTA-ATATTTAATAAATTT
1 TTAATATTTTTATATATTTAATAAAATC
73744614 TTAATATTTTTATTATATTTA
1 TTAATATTTTTA-TATATTTA
73744635 TTCATTTTTA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
26 13 0.33
27 9 0.23
28 10 0.26
29 7 0.18
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (28 bp):
TTAATATTTTTATATATTTAATAAAATC
Found at i:73745099 original size:13 final size:13
Alignment explanation
Indices: 73745056--73745100 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
73745046 AGTTCTTCAT
*
73745056 TGCTTTTGAAAAG
1 TGCTTTTGAGAAG
* *
73745069 TGCTGTGGAGAAG
1 TGCTTTTGAGAAG
73745082 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
73745095 TGCTTT
1 TGCTTT
73745101 GAAAAAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.22, C:0.09, G:0.31, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:73750522 original size:16 final size:14
Alignment explanation
Indices: 73750485--73750514 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73750475 AAGGTTTGAG
*
73750485 TAAAAATATAAATT
1 TAAAAAAATAAATT
73750499 TAAAAAAATAAATT
1 TAAAAAAATAAATT
73750513 TA
1 TA
73750515 GACAAAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
TAAAAAAATAAATT
Found at i:73750960 original size:18 final size:18
Alignment explanation
Indices: 73750937--73750973 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
73750927 ACCAAATACT
73750937 CCATGAAAACAAATTTTA
1 CCATGAAAACAAATTTTA
*
73750955 CCATGAAAAGAAATTTTA
1 CCATGAAAACAAATTTTA
73750973 C
1 C
73750974 ATTTTTCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.16, G:0.08, T:0.27
Consensus pattern (18 bp):
CCATGAAAACAAATTTTA
Found at i:73755647 original size:17 final size:15
Alignment explanation
Indices: 73755611--73755639 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
73755601 TTAATATTAT
73755611 ATTTATATTTTTTTC
1 ATTTATATTTTTTTC
73755626 ATTTATATTTTTTT
1 ATTTATATTTTTTT
73755640 TAGTTTTAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
ATTTATATTTTTTTC
Found at i:73757589 original size:26 final size:26
Alignment explanation
Indices: 73757559--73757612 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 26
73757549 TTAATAGCTC
73757559 AAAAATATTATAAGGAGACTCATATAA
1 AAAAAT-TTATAAGGAGACTCATATAA
73757586 AAAAATTTATAAGGAGACTCATATAA
1 AAAAATTTATAAGGAGACTCATATAA
73757612 A
1 A
73757613 TATACATTCC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.56, C:0.07, G:0.11, T:0.26
Consensus pattern (26 bp):
AAAAATTTATAAGGAGACTCATATAA
Found at i:73766225 original size:19 final size:19
Alignment explanation
Indices: 73766202--73766239 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
73766192 AAAAACCAAT
*
73766202 ATTTTTTAT-GAAAATAAA
1 ATTTTTTATATAAAATAAA
73766220 ATTTTTTATATAAAATAAA
1 ATTTTTTATATAAAATAAA
73766239 A
1 A
73766240 AAGTTATGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
ATTTTTTATATAAAATAAA
Found at i:73768304 original size:25 final size:23
Alignment explanation
Indices: 73768275--73768339 Score: 66
Period size: 25 Copynumber: 2.9 Consensus size: 23
73768265 AATAAAAAAC
*
73768275 TTTAAAATATAATAAATCAAATACA
1 TTTAAAACATAA-AAA-CAAATACA
73768300 TTTAAAACATAAAAACAAAT--A
1 TTTAAAACATAAAAACAAATACA
*
73768321 -TTAAAACA-AAAAATAAATA
1 TTTAAAACATAAAAACAAATA
73768340 AATAATGGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
19 9 0.24
20 8 0.22
21 1 0.03
23 5 0.14
24 3 0.08
25 11 0.30
ACGTcount: A:0.66, C:0.08, G:0.00, T:0.26
Consensus pattern (23 bp):
TTTAAAACATAAAAACAAATACA
Found at i:73768338 original size:19 final size:20
Alignment explanation
Indices: 73768301--73768339 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
73768291 TCAAATACAT
73768301 TTAAAACATAAAAACAAATA
1 TTAAAACATAAAAACAAATA
*
73768321 TTAAAACA-AAAAATAAATA
1 TTAAAACATAAAAACAAATA
73768340 AATAATGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.21
Consensus pattern (20 bp):
TTAAAACATAAAAACAAATA
Found at i:73768383 original size:17 final size:16
Alignment explanation
Indices: 73768352--73768394 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 16
73768342 TAATGGGACT
*
73768352 AAAATAAT-TATTAAA
1 AAAATAATAAATTAAA
*
73768367 ATAATACATAAATTAAA
1 AAAATA-ATAAATTAAA
73768384 AAAATAATAAA
1 AAAATAATAAA
73768395 AAGTAATTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
15 5 0.22
16 7 0.30
17 11 0.48
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATAATAAATTAAA
Found at i:73769839 original size:16 final size:16
Alignment explanation
Indices: 73769818--73769851 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
73769808 AAGGGGGAAG
73769818 GAGAAGAGAAAAAGAA
1 GAGAAGAGAAAAAGAA
*
73769834 GAGAAGAGAAGAAGAA
1 GAGAAGAGAAAAAGAA
73769850 GA
1 GA
73769852 AGGAGGATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (16 bp):
GAGAAGAGAAAAAGAA
Found at i:73769900 original size:6 final size:6
Alignment explanation
Indices: 73769889--73769919 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
73769879 TGAGGGAAGA
*
73769889 AAAAAG AAAAAG AAAAAG AGAAAG AAAAAG A
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG A
73769920 GAAGGAGAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:73769920 original size:12 final size:12
Alignment explanation
Indices: 73769889--73769958 Score: 68
Period size: 12 Copynumber: 5.4 Consensus size: 12
73769879 TGAGGGAAGA
*
73769889 AAAAAGAAAAAG
1 AAAAAGAGAAAG
73769901 AAAAAGAGAAAG
1 AAAAAGAGAAAG
73769913 AAAAAGAGAAGGAG
1 AAAAAGAGAA--AG
73769927 AAGAAGAAGAGAAAG
1 -A-AA-AAGAGAAAG
* *
73769942 AGAAAGAGAAGG
1 AAAAAGAGAAAG
73769954 AAAAA
1 AAAAA
73769959 AAAAGGTAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
12 33 0.67
13 1 0.02
14 3 0.06
15 3 0.06
16 2 0.04
17 7 0.14
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (12 bp):
AAAAAGAGAAAG
Found at i:73769930 original size:17 final size:17
Alignment explanation
Indices: 73769892--73769945 Score: 72
Period size: 17 Copynumber: 3.1 Consensus size: 17
73769882 GGGAAGAAAA
*
73769892 AAGAAAAAGAAAAAGAG
1 AAGAAAAAGAGAAAGAG
*
73769909 AAAGAAAAAGAGAAGGAG
1 -AAGAAAAAGAGAAAGAG
*
73769927 AAGAAGAAGAGAAAGAG
1 AAGAAAAAGAGAAAGAG
73769944 AA
1 AA
73769946 AGAGAAGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
17 17 0.53
18 15 0.47
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (17 bp):
AAGAAAAAGAGAAAGAG
Found at i:73769940 original size:29 final size:29
Alignment explanation
Indices: 73769898--73769963 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
73769888 AAAAAAGAAA
73769898 AAGAAAAAGAGAAAGAAAAAGAGAAGGAG
1 AAGAAAAAGAGAAAGAAAAAGAGAAGGAG
* *
73769927 AAGAAGAAGAGAAAGAGAAAGAGAAGGA-
1 AAGAAAAAGAGAAAGAAAAAGAGAAGGAG
*
73769955 AAAAAAAAG
1 AAGAAAAAG
73769964 GTAATATTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
28 7 0.21
29 26 0.79
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (29 bp):
AAGAAAAAGAGAAAGAAAAAGAGAAGGAG
Found at i:73770879 original size:141 final size:141
Alignment explanation
Indices: 73770394--73771128 Score: 894
Period size: 141 Copynumber: 5.2 Consensus size: 141
73770384 TATATTTTAA
*
73770394 AAAATCCAAAAAT-AAAATAAAAAAGGCCAAAATCAGAGGTTTTTTACTAAATTAATATAAATAT
1 AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAG-GGTTTTTTACTAAATTAATATAAA-AA
* *
73770458 ACTAAAATAATATATATGAAACATTATGTACTAAAATAATA-AAAAAAATAATATACGAAAATAG
64 ACTAAAAT-A-ATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAG
**
73770522 TATATTTTGGAAAAT
127 TATATTTTAAAAAAT
* * * *** *
73770537 AAAATCCGAAAATAAAATAAAAAACAAACGGCTAAAATCAGAAATTTTTACTAAATTAACATAGA
1 AAAATCCAAAAAT-AAA-AATAAA-AAA-GGCCAAAATCAGGGTTTTTTACTAAATTAATATA-A
* *
73770602 AAAACCAAAATAATACATTTGAAACATTATGTACTAAAATAATAT-AAAAAATAAAATACAAAAA
61 AAAACTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAA
*
73770666 TAGTATATTTT--TAAA-
124 TAGTATATTTTAAAAAAT
* * ** *
73770681 AAAATCCGAAAA-CAAAATAAAAAAAGGCCAAAATCACAGATTTTTACTAAATTAATATAAAAAA
1 AAAATCCAAAAATAAAAAT-AAAAAAGGCCAAAATCAGGGTTTTTTACTAAATTAATATAAAAAA
* *
73770745 CAAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAATAT
65 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTAT
*
73770810 ATCTTAAAAAAT
130 ATTTTAAAAAAT
* *
73770822 AAAATCCAAAAATAAAAATAAAAAGGGCCAAAATCAGGGTTTTTTTCTAAATTAATATAAAAAAA
1 AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAGGGTTTTTTACTAAATTAATAT-AAAAAA
* * * * *
73770887 CTAAAATAATGCATGAAACATTATGTACTAAAATAATAT-AAATAATAAAATATGAAAATAATAA
65 CTAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTAT
73770951 ATTTTAAAAAAT
130 ATTTTAAAAAAT
* * * *
73770963 AAAATCCGAAAATAAAAATAAAAAAGGTCAAAATCAGAGTTTTTTTTCTAAATTAATATAAAAAA
1 AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAG-GGTTTTTTACTAAATTAATATAAAAAA
* * *
73771028 CTGAAATAATACATTTGAAACATTATGTACTAAAATAATATAAAAGAATAAAATATGAAAATAGT
65 CTAAAATAATACA--TGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGT
*
73771093 ATATTTTAAAAATTT
128 ATATTTTAAAAA-AT
**
73771108 AAAATCTGAAAAT-AAAATAAA
1 AAAATCCAAAAATAAAAATAAA
73771129 TACCAAAATA
Statistics
Matches: 523, Mismatches: 48, Indels: 41
0.85 0.08 0.07
Matches are distributed among these distances:
137 26 0.05
138 27 0.05
139 17 0.03
140 33 0.06
141 134 0.26
142 73 0.14
143 38 0.07
144 52 0.10
145 22 0.04
146 6 0.01
147 82 0.16
148 13 0.02
ACGTcount: A:0.59, C:0.08, G:0.07, T:0.27
Consensus pattern (141 bp):
AAAATCCAAAAATAAAAATAAAAAAGGCCAAAATCAGGGTTTTTTACTAAATTAATATAAAAAAC
TAAAATAATACATGAAACATTATGTACTAAAATAATATAAAAAAATAAAATACGAAAATAGTATA
TTTTAAAAAAT
Found at i:73770947 original size:16 final size:16
Alignment explanation
Indices: 73770926--73770977 Score: 54
Period size: 15 Copynumber: 3.4 Consensus size: 16
73770916 AAAATAATAT
73770926 AAATAATAAAATATGA
1 AAATAATAAAATATGA
* *
73770942 AAATAAT-AAATTTTA
1 AAATAATAAAATATGA
**
73770957 AAA-AATAAAATCCGA
1 AAATAATAAAATATGA
73770972 AAATAA
1 AAATAA
73770978 AAATAAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
14 3 0.10
15 17 0.59
16 9 0.31
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (16 bp):
AAATAATAAAATATGA
Found at i:73770964 original size:30 final size:29
Alignment explanation
Indices: 73770925--73770981 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
73770915 TAAAATAATA
* *
73770925 TAAATAATAAAATATGAAAATAATAAATTT
1 TAAAAAATAAAATACGAAAATAA-AAATTT
*
73770955 TAAAAAATAAAATCCGAAAATAAAAAT
1 TAAAAAATAAAATACGAAAATAAAAAT
73770982 AAAAAAGGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 4 0.17
30 20 0.83
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.26
Consensus pattern (29 bp):
TAAAAAATAAAATACGAAAATAAAAATTT
Found at i:73771049 original size:285 final size:280
Alignment explanation
Indices: 73770377--73771128 Score: 960
Period size: 285 Copynumber: 2.7 Consensus size: 280
73770367 TAGTATATTT
* *
73770377 AAAAA-AATATATTTT--AAAAAATCCAAAAATAAAATAAAAAAGGCCAAAATCAGAGGTTTTTT
1 AAAAATAATAAATTTTAAAAAAAATCCGAAAATAAAATAAAAAAGGCCAAAATCAGA-GTTTTTT
* *
73770439 ACTAAATTAATATAAATATACTAAAATAATATATATGAAACATTATGTACTAAAATAATA-AAAA
65 ACTAAATTAATATAAA-AAACTAAAATAATACAT-TGAAACATTATGTACTAAAATAATATAAAA
* ** * *
73770503 AAATAATATACGAAAATAGTATATTTTGGAAAATAAAATCCGAAAATAAAATAAAAAACAAACGG
128 AAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCC-AAAA-ATAA-AAATAA-AAACGG
* *
73770568 CTAAAATCAGAAATTTTTACTAAATTAACATAGAAAAACCAAAATAATACATTTGAAACATTATG
189 CCAAAATCAGAAATTTTTACTAAATTAACATAAAAAAACCAAAATAATACA-TTGAAACATTATG
73770633 TACTAAAATAATATAAAAAATAAAATAC
253 TACTAAAATAATATAAAAAATAAAATAC
* * * * * *
73770661 AAAAATAGTATATTTTTAAAAAAATCCGAAAACAAAATAAAAAAAGGCCAAAATCACAGATTTTT
1 AAAAATAATAAATTTTAAAAAAAATCCGAAAATAAAAT-AAAAAAGGCCAAAATCAGAGTTTTTT
*
73770726 ACTAAATTAATATAAAAAACAAAAATAATACA-TGAAACATTATGTACTAAAATAATATAAAAAA
65 ACTAAATTAATATAAAAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAA
* * *
73770790 ATAAAATACGAAAATAATATATCTTAAAAAATAAAATCCAAAAATAAAAATAAAAAGGGCCAAAA
130 ATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATAAAAATAAAAACGGCCAAAA
*** * * * *
73770855 TCAGGGTTTTTTTCTAAATTAATATAAAAAAACTAAAATAATGCA-TGAAACATTATGTACTAAA
195 TCAGAAATTTTTACTAAATTAACATAAAAAAACCAAAATAATACATTGAAACATTATGTACTAAA
* *
73770919 ATAATATAAATAATAAAATAT
260 ATAATATAAAAAATAAAATAC
* *
73770940 GAAAATAATAAATTTTAAAAAATAAAATCCGAAAATAAAAATAAAAAAGGTCAAAATCAGAGTTT
1 AAAAATAATAAATTTT--AAAA-AAAATCCGAAAAT-AAAATAAAAAAGGCCAAAATCAGAG-TT
* *
73771005 TTTTTCTAAATTAATATAAAAAACTGAAATAATACATTTGAAACATTATGTACTAAAATAATATA
61 TTTTACTAAATTAATATAAAAAACTAAAATAATACA-TTGAAACATTATGTACTAAAATAATATA
* * * **
73771070 AAAGAATAAAATATGAAAATAGTATATTTTAAAAATTTAAAATCTGAAAAT-AAAATAAA
125 AAAAAATAAAATACGAAAATAGTATATTTTAAAAA-ATAAAATCCAAAAATAAAAATAAA
73771129 TACCAAAATA
Statistics
Matches: 410, Mismatches: 45, Indels: 25
0.85 0.09 0.05
Matches are distributed among these distances:
279 51 0.12
281 50 0.12
282 35 0.09
283 42 0.10
284 34 0.08
285 115 0.28
286 25 0.06
287 40 0.10
288 18 0.04
ACGTcount: A:0.59, C:0.08, G:0.06, T:0.27
Consensus pattern (280 bp):
AAAAATAATAAATTTTAAAAAAAATCCGAAAATAAAATAAAAAAGGCCAAAATCAGAGTTTTTTA
CTAAATTAATATAAAAAACTAAAATAATACATTGAAACATTATGTACTAAAATAATATAAAAAAA
TAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCAAAAATAAAAATAAAAACGGCCAAAAT
CAGAAATTTTTACTAAATTAACATAAAAAAACCAAAATAATACATTGAAACATTATGTACTAAAA
TAATATAAAAAATAAAATAC
Found at i:73777292 original size:22 final size:25
Alignment explanation
Indices: 73777266--73777310 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
73777256 TAAATTACCT
73777266 TTTCTTT-TTT-T-TCTTCTTCTCC
1 TTTCTTTCTTTCTATCTTCTTCTCC
73777288 TTTCTTTCTTTCTATCTTCTTCT
1 TTTCTTTCTTTCTATCTTCTTCT
73777311 TCTGTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 3 0.15
24 1 0.05
25 9 0.45
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (25 bp):
TTTCTTTCTTTCTATCTTCTTCTCC
Found at i:73777428 original size:27 final size:27
Alignment explanation
Indices: 73777398--73777456 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
73777388 GAGAAAGGCA
*
73777398 CCACCGGTGCTGCCTGTGGGGTACCCT
1 CCACCGGTGCCGCCTGTGGGGTACCCT
*
73777425 CCACTGGTGCCGCCTGTGGGGTACCCT
1 CCACCGGTGCCGCCTGTGGGGTACCCT
*
73777452 TCACC
1 CCACC
73777457 CTTATTTTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.08, C:0.39, G:0.31, T:0.22
Consensus pattern (27 bp):
CCACCGGTGCCGCCTGTGGGGTACCCT
Found at i:73783635 original size:17 final size:17
Alignment explanation
Indices: 73783595--73783637 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
73783585 ATTATTTAGT
*
73783595 AATACTTATATTTTAAA
1 AATACTTTTATTTTAAA
*
73783612 AGA-ACTTTTGTTTTAAA
1 A-ATACTTTTATTTTAAA
73783629 AATACTTTT
1 AATACTTTT
73783638 TGGCCCAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 1 0.05
17 20 0.91
18 1 0.05
ACGTcount: A:0.40, C:0.07, G:0.05, T:0.49
Consensus pattern (17 bp):
AATACTTTTATTTTAAA
Found at i:73793669 original size:37 final size:37
Alignment explanation
Indices: 73793619--73793697 Score: 158
Period size: 37 Copynumber: 2.1 Consensus size: 37
73793609 AGCACTCACC
73793619 TCAATGTTTATTCCCACAATGTTGACATTCTAGAATT
1 TCAATGTTTATTCCCACAATGTTGACATTCTAGAATT
73793656 TCAATGTTTATTCCCACAATGTTGACATTCTAGAATT
1 TCAATGTTTATTCCCACAATGTTGACATTCTAGAATT
73793693 TCAAT
1 TCAAT
73793698 ATTTCTAGAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.10, T:0.41
Consensus pattern (37 bp):
TCAATGTTTATTCCCACAATGTTGACATTCTAGAATT
Found at i:73800953 original size:21 final size:21
Alignment explanation
Indices: 73800927--73800967 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
73800917 CACCATCATC
73800927 ATCAATATCAGCAGCAGCAGT
1 ATCAATATCAGCAGCAGCAGT
*
73800948 ATCAATATCATCAGCAGCAG
1 ATCAATATCAGCAGCAGCAG
73800968 CAGCAACAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.20
Consensus pattern (21 bp):
ATCAATATCAGCAGCAGCAGT
Found at i:73806072 original size:30 final size:31
Alignment explanation
Indices: 73806017--73806088 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 31
73806007 ACTTAGTGAC
* * **
73806017 TAAAATGTTACAATGTAATAACATAAGTGGT
1 TAAAATGTAACAATGTAATAACATAAATAAT
* *
73806048 TAAAATGTAACATTTTAA-AACATAAATAAT
1 TAAAATGTAACAATGTAATAACATAAATAAT
73806078 TAAAATGTAAC
1 TAAAATGTAAC
73806089 TTAAGATAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
30 20 0.57
31 15 0.43
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.32
Consensus pattern (31 bp):
TAAAATGTAACAATGTAATAACATAAATAAT
Found at i:73808118 original size:19 final size:20
Alignment explanation
Indices: 73808081--73808118 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
73808071 TACGTAATTT
* *
73808081 AAAATTAAAATTTTTTAAAC
1 AAAATTAAAATATTATAAAC
73808101 AAAATT-AAATATTATAAA
1 AAAATTAAAATATTATAAA
73808119 AATAAATATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATTAAAATATTATAAAC
Found at i:73815778 original size:16 final size:15
Alignment explanation
Indices: 73815750--73815779 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
73815740 ATGACTATAT
73815750 ATAAAATTATAATAA
1 ATAAAATTATAATAA
73815765 ATAAAATATATAATA
1 ATAAAAT-TATAATA
73815780 CTATTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
ATAAAATTATAATAA
Found at i:73822256 original size:22 final size:22
Alignment explanation
Indices: 73822210--73822260 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
73822200 ATCATCAATT
73822210 AATTAATTATTAAAATTTTTAAA
1 AATTAATTA-TAAAATTTTTAAA
*
73822233 AATTAATTA-AAAATATTTTTAA
1 AATTAATTATAAAAT-TTTTAAA
73822255 AATTAA
1 AATTAA
73822261 AAATAATTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 5 0.19
22 12 0.46
23 9 0.35
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AATTAATTATAAAATTTTTAAA
Found at i:73822624 original size:11 final size:11
Alignment explanation
Indices: 73822608--73822633 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73822598 CTACTACGTT
73822608 TTCCATTTTCG
1 TTCCATTTTCG
73822619 TTCCATTTTCG
1 TTCCATTTTCG
73822630 TTCC
1 TTCC
73822634 GATCCGTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.08, C:0.31, G:0.08, T:0.54
Consensus pattern (11 bp):
TTCCATTTTCG
Found at i:73830245 original size:31 final size:31
Alignment explanation
Indices: 73830188--73830253 Score: 75
Period size: 31 Copynumber: 2.1 Consensus size: 31
73830178 ATATAAATAA
*
73830188 TTAAAAACTATATATTTATTGATTTAT-TAAT
1 TTAAAAAATATATATTTATTGATTTATAT-AT
73830219 TTAAAAAATA-ATATTATATT-ATTTTATATAT
1 TTAAAAAATATATATT-TATTGA-TTTATATAT
73830250 TTAA
1 TTAA
73830254 TATAAAATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
30 6 0.19
31 24 0.77
32 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (31 bp):
TTAAAAAATATATATTTATTGATTTATATAT
Found at i:73842317 original size:53 final size:53
Alignment explanation
Indices: 73842247--73842386 Score: 192
Period size: 53 Copynumber: 2.6 Consensus size: 53
73842237 CACATATCAT
* * *
73842247 ACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTATCACATTAT
1 ACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTATCACATTAC
* * *
73842300 ACTGATGCCATAGCCCAGCTATGGTCTTATACGGAGTCACATTATCACATTGC
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
* *
73842353 ACCGATGCCATAGCCCAGCTACGGTCTTAAACGG
1 ACCGATGCCATAGCCCAGCTATGGTCTTATACGG
73842387 GCACACTTAT
Statistics
Matches: 77, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
52 1 0.01
53 76 0.99
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (53 bp):
ACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTATCACATTAC
Found at i:73845083 original size:20 final size:21
Alignment explanation
Indices: 73845060--73845098 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
73845050 TTACCAATGA
73845060 ATCTAAAGATTTA-CTAAAAT
1 ATCTAAAGATTTACCTAAAAT
*
73845080 ATCTAATGATTTACCTAAA
1 ATCTAAAGATTTACCTAAA
73845099 GATTGACCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.46, C:0.13, G:0.05, T:0.36
Consensus pattern (21 bp):
ATCTAAAGATTTACCTAAAAT
Found at i:73845098 original size:32 final size:32
Alignment explanation
Indices: 73845062--73845122 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
73845052 ACCAATGAAT
* * *
73845062 CTAAAGATTTACTAAAATATCTAATGATTTAC
1 CTAAAGATTGACCAAAATATCAAATGATTTAC
*
73845094 CTAAAGATTGACCAAATTATCAAATGATT
1 CTAAAGATTGACCAAAATATCAAATGATT
73845123 AACCATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.34
Consensus pattern (32 bp):
CTAAAGATTGACCAAAATATCAAATGATTTAC
Found at i:73845177 original size:20 final size:20
Alignment explanation
Indices: 73845140--73845230 Score: 64
Period size: 20 Copynumber: 4.6 Consensus size: 20
73845130 ATTTCTAATA
* *
73845140 ATTTACCAA-AATATTTAACC
1 ATTTACCAATATTA-TTAAGC
*
73845160 ATTTACCAATATTATTAAGG
1 ATTTACCAATATTATTAAGC
*
73845180 ATTTATCAATA-TATCTAA-C
1 ATTTACCAATATTAT-TAAGC
* *
73845199 ATTTTACTAATATT-TTAAGG
1 A-TTTACCAATATTATTAAGC
*
73845219 ATTTACTAATAT
1 ATTTACCAATAT
73845231 ATCTAACATT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
19 18 0.31
20 36 0.62
21 4 0.07
ACGTcount: A:0.41, C:0.12, G:0.04, T:0.43
Consensus pattern (20 bp):
ATTTACCAATATTATTAAGC
Found at i:73845184 original size:40 final size:38
Alignment explanation
Indices: 73845140--73845241 Score: 132
Period size: 39 Copynumber: 2.6 Consensus size: 38
73845130 ATTTCTAATA
* *
73845140 ATTTACCAAAATATTTAACCATTTACCAATATTATTAAGG
1 ATTTACCAATATATCTAA-CATTTACCAATATT-TTAAGG
* *
73845180 ATTTATCAATATATCTAACATTTTACTAATATTTTAAGG
1 ATTTACCAATATATCTAACA-TTTACCAATATTTTAAGG
*
73845219 ATTTACTAATATATCTAACATTT
1 ATTTACCAATATATCTAACATTT
73845242 TATCAGTATT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
38 3 0.05
39 26 0.47
40 26 0.47
ACGTcount: A:0.40, C:0.13, G:0.04, T:0.43
Consensus pattern (38 bp):
ATTTACCAATATATCTAACATTTACCAATATTTTAAGG
Found at i:73845225 original size:19 final size:19
Alignment explanation
Indices: 73845160--73845230 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 19
73845150 ATATTTAACC
*
73845160 ATTTACCAATATTATTAAGG
1 ATTTACTAATATT-TTAAGG
* *
73845180 ATTTA-TCAATATATCTAA-C
1 ATTTACT-AATAT-TTTAAGG
73845199 ATTTTACTAATATTTTAAGG
1 A-TTTACTAATATTTTAAGG
73845219 ATTTACTAATAT
1 ATTTACTAATAT
73845231 ATCTAACATT
Statistics
Matches: 41, Mismatches: 5, Indels: 11
0.72 0.09 0.19
Matches are distributed among these distances:
19 16 0.39
20 23 0.56
21 2 0.05
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (19 bp):
ATTTACTAATATTTTAAGG
Found at i:73845241 original size:19 final size:19
Alignment explanation
Indices: 73845187--73845241 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
73845177 AGGATTTATC
73845187 AATATATCTAACATTTTACT
1 AATATATCTAACA-TTTACT
* *
73845207 AATAT-TTTAAGGATTTACT
1 AATATATCTAA-CATTTACT
73845226 AATATATCTAACATTT
1 AATATATCTAACATTT
73845242 TATCAGTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
19 19 0.66
20 10 0.34
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (19 bp):
AATATATCTAACATTTACT
Found at i:73845242 original size:39 final size:40
Alignment explanation
Indices: 73845161--73845243 Score: 134
Period size: 39 Copynumber: 2.1 Consensus size: 40
73845151 TATTTAACCA
73845161 TTTACCAATATTATTAAGGATTTATCAATATATCTAACAT
1 TTTACCAATATTATTAAGGATTTATCAATATATCTAACAT
*
73845201 TTTACTAATATT-TTAAGGATTTA-CTAATATATCTAACAT
1 TTTACCAATATTATTAAGGATTTATC-AATATATCTAACAT
73845240 TTTA
1 TTTA
73845244 TCAGTATTTC
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
38 1 0.02
39 29 0.71
40 11 0.27
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.46
Consensus pattern (40 bp):
TTTACCAATATTATTAAGGATTTATCAATATATCTAACAT
Found at i:73845329 original size:20 final size:20
Alignment explanation
Indices: 73845306--73845354 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
73845296 TATTGTTTTG
*
73845306 CCAATATTTATGAGAATTTA
1 CCAATATTTATAAGAATTTA
* * *
73845326 CCAAAATTTCTAAGATTTTA
1 CCAATATTTATAAGAATTTA
*
73845346 CTAATATTT
1 CCAATATTT
73845355 TCAAAATTTC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.43
Consensus pattern (20 bp):
CCAATATTTATAAGAATTTA
Found at i:73845445 original size:20 final size:20
Alignment explanation
Indices: 73845422--73845617 Score: 105
Period size: 20 Copynumber: 9.9 Consensus size: 20
73845412 TATTAAAACA
73845422 TCTAACGATTTACCAATATT
1 TCTAACGATTTACCAATATT
* * * *
73845442 TCTAAGGGTTTACAAATAGT
1 TCTAACGATTTACCAATATT
*
73845462 ACTAACGATTTACCAATATT
1 TCTAACGATTTACCAATATT
* **
73845482 TCT-A-G-TTTCACAAATAAA
1 TCTAACGATTT-ACCAATATT
** * *
73845500 TCTAAAAATTTACTAAAATT
1 TCTAACGATTTACCAATATT
** *
73845520 TCTAAAAATTTACCAATACT
1 TCTAACGATTTACCAATATT
* * * *
73845540 TATAAGGGTTTATCAATATAT
1 TCTAACGATTTACCAATAT-T
* **
73845561 TC-AAAGATTTACCAATAAA
1 TCTAACGATTTACCAATATT
* *
73845580 TCTAACGATTTATCAAAATT
1 TCTAACGATTTACCAATATT
*
73845600 TCT-ACTGTTTTACCAATA
1 TCTAAC-GATTTACCAATA
73845618 CTTATTAGAC
Statistics
Matches: 128, Mismatches: 41, Indels: 14
0.70 0.22 0.08
Matches are distributed among these distances:
17 3 0.02
18 10 0.08
19 6 0.05
20 104 0.81
21 5 0.04
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (20 bp):
TCTAACGATTTACCAATATT
Found at i:73845511 original size:38 final size:38
Alignment explanation
Indices: 73845429--73845523 Score: 95
Period size: 38 Copynumber: 2.4 Consensus size: 38
73845419 ACATCTAACG
* **
73845429 ATTTACCAATATTTCTAAGGGTTTACAAATAGTACTAACG
1 ATTTACCAATATTTCT-A-GGTTTACAAATAATACTAAAA
73845469 ATTTACCAATATTTCTA-GTTTCACAAATAA-ATCTAAAA
1 ATTTACCAATATTTCTAGGTTT-ACAAATAATA-CTAAAA
* *
73845507 ATTTACTAAAATTTCTA
1 ATTTACCAATATTTCTA
73845524 AAAATTTACC
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
37 5 0.10
38 26 0.54
39 1 0.02
40 16 0.33
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (38 bp):
ATTTACCAATATTTCTAGGTTTACAAATAATACTAAAA
Found at i:73845519 original size:10 final size:11
Alignment explanation
Indices: 73845501--73845532 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
73845491 ACAAATAAAT
73845501 CTAAAAATTTA
1 CTAAAAATTTA
73845512 CT-AAAATTT-
1 CTAAAAATTTA
73845521 CTAAAAATTTA
1 CTAAAAATTTA
73845532 C
1 C
73845533 CAATACTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 2 0.11
10 14 0.74
11 3 0.16
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (11 bp):
CTAAAAATTTA
Found at i:73845592 original size:40 final size:40
Alignment explanation
Indices: 73845400--73845603 Score: 143
Period size: 40 Copynumber: 5.2 Consensus size: 40
73845390 TACAAAAAAA
* *
73845400 ATTT-TAAAGATTTATTAAA-ACATCTAACGATTTACCAAT
1 ATTTCTAAAGATTTA-CAAATAAATCTAACGATTTACCAAT
* * *
73845439 ATTTCTAAGGGTTTACAAAT-AGTACTAACGATTTACCAAT
1 ATTTCTAAAGATTTACAAATAAAT-CTAACGATTTACCAAT
** * *
73845479 ATTTCT--AG-TTTCACAAATAAATCTAAAAATTTACTAAA
1 ATTTCTAAAGATTT-ACAAATAAATCTAACGATTTACCAAT
* * ** * * * *
73845517 ATTTCTAAAAATTTACCAATACTTATAAGGGTTTATCAAT
1 ATTTCTAAAGATTTACAAATAAATCTAACGATTTACCAAT
* * *
73845557 ATATTC-AAAGATTTACCAATAAATCTAACGATTTATCAAA
1 AT-TTCTAAAGATTTACAAATAAATCTAACGATTTACCAAT
73845597 ATTTCTA
1 ATTTCTA
73845604 CTGTTTTACC
Statistics
Matches: 126, Mismatches: 29, Indels: 19
0.72 0.17 0.11
Matches are distributed among these distances:
37 3 0.02
38 25 0.20
39 13 0.10
40 79 0.63
41 6 0.05
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (40 bp):
ATTTCTAAAGATTTACAAATAAATCTAACGATTTACCAAT
Found at i:73845869 original size:20 final size:20
Alignment explanation
Indices: 73845715--73845870 Score: 68
Period size: 20 Copynumber: 7.8 Consensus size: 20
73845705 TTTTTGTGAT
* * *
73845715 TTTACGAAAATATATAAAAA
1 TTTACTAAAATATCTAAGAA
* * * *
73845735 TTAACTAATATTTCTAAGGA
1 TTTACTAAAATATCTAAGAA
* * *
73845755 TTTACAAAAAAAT-TAACAA
1 TTTACTAAAATATCTAAGAA
* * * *
73845774 CTTACCAATATATGTAACG-A
1 TTTACTAAAATATCTAA-GAA
* * *
73845794 TTTACTAAAAGATATAAAAA
1 TTTACTAAAATATCTAAGAA
* * *
73845814 TTTA-TCAAAATATTTAACAG
1 TTTACT-AAAATATCTAAGAA
*
73845834 TTTAC-AAATATTTCTAAGAA
1 TTTACTAAA-ATATCTAAGAA
73845854 TTTACTAAAATATCTAA
1 TTTACTAAAATATCTAA
73845871 ATTTCTATCA
Statistics
Matches: 95, Mismatches: 34, Indels: 14
0.66 0.24 0.10
Matches are distributed among these distances:
19 17 0.18
20 75 0.79
21 3 0.03
ACGTcount: A:0.50, C:0.10, G:0.05, T:0.35
Consensus pattern (20 bp):
TTTACTAAAATATCTAAGAA
Found at i:73846146 original size:20 final size:20
Alignment explanation
Indices: 73846121--73846162 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
73846111 GATTTATTAA
*
73846121 ATATCTA-AAACTTTACCGAT
1 ATATCTATAAA-TTTACCCAT
73846141 ATATCTATAAATTTACCCAT
1 ATATCTATAAATTTACCCAT
73846161 AT
1 AT
73846163 TTATTTAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (20 bp):
ATATCTATAAATTTACCCAT
Found at i:73852139 original size:20 final size:20
Alignment explanation
Indices: 73852114--73852155 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
73852104 GCACACGCCC
* *
73852114 GTGTGGCTTGGGACAAGCCT
1 GTGTGGCCTGGAACAAGCCT
*
73852134 GTGTGGCCTGGAACATGCCT
1 GTGTGGCCTGGAACAAGCCT
73852154 GT
1 GT
73852156 ATGCTGCAGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.14, C:0.21, G:0.38, T:0.26
Consensus pattern (20 bp):
GTGTGGCCTGGAACAAGCCT
Found at i:73853038 original size:53 final size:52
Alignment explanation
Indices: 73852972--73853095 Score: 144
Period size: 52 Copynumber: 2.4 Consensus size: 52
73852962 ATGTCATATT
*
73852972 CCAGATATGGTCTTATAC-AAAAT-CACATTATCACATCACACCGATGCCATAGC
1 CCAGCTATGGTCTTATACGAAAATGCA-A--ATCACATCACACCGATGCCATAGC
** ***
73853025 CCAGCTATGGTCTTATACGGGAATGCAAATCACATTGTACCGATGCCATAGC
1 CCAGCTATGGTCTTATACGAAAATGCAAATCACATCACACCGATGCCATAGC
*
73853077 CCGGCTATGGTCTTATACG
1 CCAGCTATGGTCTTATACG
73853096 GAAGTATATA
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
52 39 0.63
53 17 0.27
54 4 0.06
55 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (52 bp):
CCAGCTATGGTCTTATACGAAAATGCAAATCACATCACACCGATGCCATAGC
Found at i:73873936 original size:29 final size:29
Alignment explanation
Indices: 73873897--73873968 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 29
73873887 AATCTATATC
* *
73873897 TTTATAATTTTAAAAAATTAAATTA-AATT
1 TTTATATTTTTAAAAAATTAAAATATAA-T
73873926 TTTATATTTTTAAAAAATTAAAATATAAT
1 TTTATATTTTTAAAAAATTAAAATATAAT
73873955 TTTATATTTATTAA
1 TTTATATTT-TTAA
73873969 TTTAAAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
29 33 0.85
30 6 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (29 bp):
TTTATATTTTTAAAAAATTAAAATATAAT
Found at i:73880837 original size:42 final size:41
Alignment explanation
Indices: 73880775--73880888 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 41
73880765 TTCGTTTTCT
** * *
73880775 TGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
73880817 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
73880858 TCGATGCCATAGCCCAGCTATGGTCTTACAC
1 T-GATGCCATAGCCCAGCTATGGTCTTACAC
73880889 GAATCACATA
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 2 0.03
42 64 0.97
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (41 bp):
TGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:73880962 original size:47 final size:46
Alignment explanation
Indices: 73880859--73880982 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
73880849 ATTCATATAT
* * * * *
73880859 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * *
73880905 TGATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
*
73880952 CGATGCCATATCCCAGATATGTTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
73880983 GAAATCACTT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
46 27 0.40
47 40 0.60
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:73881023 original size:31 final size:31
Alignment explanation
Indices: 73880988--73881158 Score: 204
Period size: 31 Copynumber: 5.5 Consensus size: 31
73880978 ATACGGAAAT
* **
73880988 CACTTGTCACTTGTCTCGTAGCCGGAGCTAC
1 CACTTTTCACTTGTCAGGTAGCCGGAGCTAC
73881019 CACTTTTCAC-TGATCAGGTAGCCGGAGCTAC
1 CACTTTTCACTTG-TCAGGTAGCCGGAGCTAC
*
73881050 CACTTTTCACTTATCAGGTAGCCGGAGCTAC
1 CACTTTTCACTTGTCAGGTAGCCGGAGCTAC
***
73881081 CACTTTTCAC-TGATCAGGTAGCAAAAGCTAC
1 CACTTTTCACTTG-TCAGGTAGCCGGAGCTAC
* * *
73881112 CACTTTTCAC-TGATCAGGTTGCTGAAGCTAC
1 CACTTTTCACTTG-TCAGGTAGCCGGAGCTAC
73881143 CACTTTTCACTTGTCA
1 CACTTTTCACTTGTCA
73881159 TTTGTCATTG
Statistics
Matches: 125, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
30 3 0.02
31 119 0.95
32 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.30
Consensus pattern (31 bp):
CACTTTTCACTTGTCAGGTAGCCGGAGCTAC
Found at i:73881085 original size:62 final size:62
Alignment explanation
Indices: 73881005--73881153 Score: 235
Period size: 62 Copynumber: 2.4 Consensus size: 62
73880995 CACTTGTCTC
*** *
73881005 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCCGGAGCTACCACTTTTCACTTATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACTGATCAG
73881067 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACTGATCAG
* * *
73881129 GTTGCTGAAGCTACCACTTTTCACT
1 GTAGCCGGAGCTACCACTTTTCACT
73881154 TGTCATTTGT
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 80 1.00
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (62 bp):
GTAGCCGGAGCTACCACTTTTCACTGATCAGGTAGCAAAAGCTACCACTTTTCACTGATCAG
Found at i:73881233 original size:50 final size:51
Alignment explanation
Indices: 73881135--73881257 Score: 196
Period size: 50 Copynumber: 2.4 Consensus size: 51
73881125 TCAGGTTGCT
* *
73881135 GAAGCTACCACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCC
1 GAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCC
*
73881186 GAAGCTATCACTTATCACTT-TCACTTT-TCCTTGATCAGATAAGTGTAGCC
1 GAAGCTATCACTTATCACTTGTCA-TTTGTCATTGATCAGATAAGTGTAGCC
73881236 GAAGCTATCACTTATCACTTGT
1 GAAGCTATCACTTATCACTTGT
73881258 TGCCATGTTC
Statistics
Matches: 67, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
50 45 0.67
51 22 0.33
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (51 bp):
GAAGCTATCACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCC
Found at i:73886422 original size:30 final size:30
Alignment explanation
Indices: 73886381--73886438 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
73886371 ATCTTCAATT
*
73886381 TGCTTTCTTGCTACCTTAGCAAGATAAGAC
1 TGCTCTCTTGCTACCTTAGCAAGATAAGAC
**
73886411 TGCTCTCTTGCTACCTTAGGGAGATAAG
1 TGCTCTCTTGCTACCTTAGCAAGATAAG
73886439 GCTGGTAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (30 bp):
TGCTCTCTTGCTACCTTAGCAAGATAAGAC
Found at i:73887041 original size:44 final size:45
Alignment explanation
Indices: 73886958--73887054 Score: 112
Period size: 44 Copynumber: 2.2 Consensus size: 45
73886948 ATTGCTTAGG
**
73886958 GAGATAAGATATTCAATCTTCAGTCTGCTTCCTTACTACCTCAG-
1 GAGATAAGATATTCAATCTTCAACCTGCTTCCTTACTACCTCAGA
*
73887002 GAAGATAAGACTA-TC-ATCTTCAACCTG-TTCTCTTGCTACCTCAGA
1 G-AGATAAGA-TATTCAATCTTCAACCTGCTTC-CTTACTACCTCAGA
73887047 GAGATAAG
1 GAGATAAG
73887055 GTCAATGGCT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
43 3 0.07
44 30 0.65
45 11 0.24
46 2 0.04
ACGTcount: A:0.30, C:0.24, G:0.15, T:0.31
Consensus pattern (45 bp):
GAGATAAGATATTCAATCTTCAACCTGCTTCCTTACTACCTCAGA
Found at i:73887225 original size:177 final size:175
Alignment explanation
Indices: 73886707--73887337 Score: 628
Period size: 177 Copynumber: 3.6 Consensus size: 175
73886697 TAAATCTTGG
* * * ***
73886707 GGCTTAAATCTACTCCATTGCCGATACACGGAGATAAGATTCGCC-TCTTTCGATCTAACCCGCT
1 GGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATC-TTCGATCTGTTCCGCT
* * * *
73886771 TCTG-TTCAGGGAAATAAGATCTTCAATCTTTAGTCTGCTTCCTTGCTACCTT-AGGAAGATAAT
65 ACTGCTT-AGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTA-CTTCAGGAAGATAAG
* * * * *
73886834 ACTACAATCGCCAACCTGCTCTCTTGCTACCTCAGACAAATAAGGTCAAT
128 ACTATACTTG--AACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCAAT
* * * * *
73886884 AGCTAAAATCTGCTCCATCGCCAATACATGGAGATAAGATTCGCCATCCTCGATCTGTTCCGTTA
1 GGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGTTCCGCTA
* * * *
73886949 TTGCTTAGGGAGATAAGATATTCAATCTTCAGTCTGCTTCCTTACTACCTCAGGAAGATAAGACT
66 CTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACTTCAGGAAGATAAGACT
* *
73887014 ATCATCTTCAACCTGTTCTCTTGCTACCTCAGAGAGATAAGGTCAAT
131 AT-A-CTTGAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCAAT
*
73887061 GGCTAAAATCTGCTCCATTGTCGATACATGGAGATAAGATTCGCCATCTTCGATCTGTTCCGCTA
1 GGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGTTCCGCTA
* * * * *
73887126 CTGCTTAGGGAGATAAGATCTTTCAATCTTCAGTCTGCTTTCTTGGTACTTCAGAAATATAAGAT
66 CTGCTTAGGGAGATAAGATC-TTCAATCTTCAGTCTGCTTCCTTGCTACTTCAGGAAGATAAGAC
* * **
73887191 TATACCTTGAACCTGCTC-CACTG-TAACTTCAGAGAGATAAGG-CTGGT
130 TATA-CTTGAACCTGCTCTC-TTGCT-ACCTCAGAGAGATAAGGTC-AAT
* * * * *** * * * *
73887238 GACTTAAATCCGCTCCATTGCCTG-TATATGGAGATAAGATTCGTTGTCTTTGGTCTGTTTCACT
1 GGCTAAAATCTGCTCCATTGCC-GATACATGGAGATAAGATTCGCCATCTTCGATCTGTTCCGCT
* * * * *
73887302 ATTGCTTAGGGAAATAAGACCTGCAATCCTCAGTCT
65 ACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCT
73887338 ACCCCACTGC
Statistics
Matches: 379, Mismatches: 65, Indels: 21
0.82 0.14 0.05
Matches are distributed among these distances:
176 18 0.05
177 314 0.83
178 46 0.12
179 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (175 bp):
GGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGTTCCGCTA
CTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACTTCAGGAAGATAAGACT
ATACTTGAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGTCAAT
Found at i:73887626 original size:64 final size:64
Alignment explanation
Indices: 73887525--73887712 Score: 304
Period size: 64 Copynumber: 2.9 Consensus size: 64
73887515 TGTATCATGA
* * *
73887525 TTATGCCAAATAATTAGGATGTTATAATCAAAATGAACCAAATGCTCCTAACTAGATGTGATGC
1 TTATGTCAAATAATTAGGATGCTATGATCAAAATGAACCAAATGCTCCTAACTAGATGTGATGC
*
73887589 TTATGTCAAATAATTAGGATGCTATGATCAAAATGAACCAAATACTCCTAACTAGATGTGATGC
1 TTATGTCAAATAATTAGGATGCTATGATCAAAATGAACCAAATGCTCCTAACTAGATGTGATGC
* ** *
73887653 TGATGTCAAATAATTAGGATGCTATGATTGAAATGAATCAAATGCTCCTAACTAGATGTG
1 TTATGTCAAATAATTAGGATGCTATGATCAAAATGAACCAAATGCTCCTAACTAGATGTG
73887713 TTATGAATGA
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 115 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.30
Consensus pattern (64 bp):
TTATGTCAAATAATTAGGATGCTATGATCAAAATGAACCAAATGCTCCTAACTAGATGTGATGC
Found at i:73887770 original size:15 final size:14
Alignment explanation
Indices: 73887742--73887769 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
73887732 GCAAAGATGA
73887742 AAATGATCTTTTTT
1 AAATGATCTTTTTT
73887756 AAATGATCTTTTTT
1 AAATGATCTTTTTT
73887770 TTTTCTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
AAATGATCTTTTTT
Found at i:73893100 original size:14 final size:14
Alignment explanation
Indices: 73893077--73893106 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
73893067 TTGAAAATAT
73893077 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
73893091 GTTGATTTGGATTG
1 GTTGAATTGGATTG
73893105 GT
1 GT
73893107 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:73894242 original size:20 final size:19
Alignment explanation
Indices: 73894213--73894258 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
73894203 ACAAAAAATT
*
73894213 AAAAAAAAAATAACTATTA
1 AAAAAAAAAAAAACTATTA
* *
73894232 AAAAAACAAAAAAATTGTTA
1 AAAAAA-AAAAAAACTATTA
73894252 AAAAAAA
1 AAAAAAA
73894259 CATTTTTGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.17
Consensus pattern (19 bp):
AAAAAAAAAAAAACTATTA
Found at i:73894274 original size:65 final size:64
Alignment explanation
Indices: 73894201--73894329 Score: 249
Period size: 64 Copynumber: 2.0 Consensus size: 64
73894191 TGACCATCTC
73894201 TGACAAAAAATTAAAAAAAAAATAACTATTAAAAAAACAAAAAAATTGTTAAAAAAAACATTTT
1 TGACAAAAAATTAAAAAAAAAATAACTATTAAAAAAACAAAAAAATTGTTAAAAAAAACATTTT
*
73894265 TGACAAAAAATTTAAAAAAAAATAACTATTAAAAAAACAAAAAAATTGTTAAAAAAAACATTTT
1 TGACAAAAAATTAAAAAAAAAATAACTATTAAAAAAACAAAAAAATTGTTAAAAAAAACATTTT
73894329 T
1 T
73894330 CCTATTATTA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.25
Consensus pattern (64 bp):
TGACAAAAAATTAAAAAAAAAATAACTATTAAAAAAACAAAAAAATTGTTAAAAAAAACATTTT
Found at i:73894306 original size:20 final size:19
Alignment explanation
Indices: 73894278--73894322 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
73894268 CAAAAAATTT
*
73894278 AAAAAAAAATAACTATTAA
1 AAAAAAAAAAAACTATTAA
* *
73894297 AAAAACAAAAAAATTGTTAA
1 AAAAA-AAAAAAACTATTAA
73894317 AAAAAA
1 AAAAAA
73894323 CATTTTTCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.76, C:0.04, G:0.02, T:0.18
Consensus pattern (19 bp):
AAAAAAAAAAAACTATTAA
Found at i:73897396 original size:115 final size:115
Alignment explanation
Indices: 73897189--73897396 Score: 292
Period size: 115 Copynumber: 1.8 Consensus size: 115
73897179 TGTTCAAAAA
* * ** *
73897189 AAGTTTGTATTAAATGTATGATTAATTTGTTTTATTAATGTTTTTGTGGTACCTTATATTAGATT
1 AAGTTTGTATTAAAGGTATGATTAATTTGTTTGATTAATGTTTTTGAAGTACCTTATATCAGATT
* *
73897254 TTCGTATTTAAGGGAAATGTTATTTTTTGTTGTTGTGTTTTATTAGGTTT
66 TTCGTATTTAAGGCAAATGATATTTTTTGTTGTTGTGTTTTATTAGGTTT
* * *
73897304 AAGTTTGTATTAAAGGTATGATTAATTTGTTTGATTAATGTTTTTGAAGTATCTTATATCGGTTT
1 AAGTTTGTATTAAAGGTATGATTAATTTGTTTGATTAATGTTTTTGAAGTACCTTATATCAGATT
*
73897369 TTTGTATTTAAGGCATAA-GCATATTTTT
66 TTCGTATTTAAGGCA-AATG-ATATTTTT
73897397 ATAAGTTATT
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
115 71 0.89
116 9 0.11
ACGTcount: A:0.25, C:0.03, G:0.18, T:0.53
Consensus pattern (115 bp):
AAGTTTGTATTAAAGGTATGATTAATTTGTTTGATTAATGTTTTTGAAGTACCTTATATCAGATT
TTCGTATTTAAGGCAAATGATATTTTTTGTTGTTGTGTTTTATTAGGTTT
Found at i:73897663 original size:18 final size:19
Alignment explanation
Indices: 73897635--73897670 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
73897625 AAATTCACGG
*
73897635 AATTATTTTTTAGTTGATC
1 AATTATTTTTTAATTGATC
73897654 AATT-TTTTTTAATTGAT
1 AATTATTTTTTAATTGAT
73897671 AGGATGAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.28, C:0.03, G:0.08, T:0.61
Consensus pattern (19 bp):
AATTATTTTTTAATTGATC
Found at i:73900143 original size:11 final size:11
Alignment explanation
Indices: 73900127--73900152 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
73900117 TAAATGCCAA
73900127 ATTTTGATTAT
1 ATTTTGATTAT
73900138 ATTTTGATTAT
1 ATTTTGATTAT
73900149 ATTT
1 ATTT
73900153 ATATTTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (11 bp):
ATTTTGATTAT
Found at i:73901687 original size:22 final size:21
Alignment explanation
Indices: 73901646--73901702 Score: 64
Period size: 22 Copynumber: 2.8 Consensus size: 21
73901636 CAAAAATCAC
73901646 TTTTTC-TCTTAAAAAAGTTT
1 TTTTTCATCTTAAAAAAGTTT
**
73901666 TGTTTTCATCTTAAAAGCGTTT
1 T-TTTTCATCTTAAAAAAGTTT
*
73901688 TTTTTGA-CTTAAAAA
1 TTTTTCATCTTAAAAA
73901703 TAATTTTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
20 8 0.26
21 10 0.32
22 13 0.42
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.51
Consensus pattern (21 bp):
TTTTTCATCTTAAAAAAGTTT
Found at i:73901814 original size:41 final size:41
Alignment explanation
Indices: 73901769--73901852 Score: 150
Period size: 41 Copynumber: 2.0 Consensus size: 41
73901759 TGATGATGCA
*
73901769 GGTAGAGCCTAGATCTAGAAAGAAAGAATTTGTGTTAGTAG
1 GGTAGAGCCTAGATCTAGAAAGAAAGAATTTGTGTCAGTAG
*
73901810 GGTAGAGCCTAGATCTAGAAAGAACGAATTTGTGTCAGTAG
1 GGTAGAGCCTAGATCTAGAAAGAAAGAATTTGTGTCAGTAG
73901851 GG
1 GG
73901853 AAATAATAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.35, C:0.10, G:0.31, T:0.25
Consensus pattern (41 bp):
GGTAGAGCCTAGATCTAGAAAGAAAGAATTTGTGTCAGTAG
Found at i:73903167 original size:96 final size:98
Alignment explanation
Indices: 73903000--73903192 Score: 304
Period size: 96 Copynumber: 2.0 Consensus size: 98
73902990 CGAGCCTGTT
* *
73903000 CCATTTTCACTCTCTCCGAAGTAAATTTTCTTTTCCTCTTTTCTGTTCACGTTCAAGATTGTTCA
1 CCATTTTCACTCTCTCCAAAGTAAATTATCTTTTCCTCTTTTCTGTTCACGTTCAAGATTGTTCA
*
73903065 GTGATTAATTTGCACGCCAAGTAATT-TTTTTC
66 GCGATTAATTTGCACGCCAAGTAATTCTTTTTC
73903097 CCATTTTCACTCTCTCCAAAGT-AATCTAT-TTTTCCTCTTTTCTGTTCAAC-TTCAAGATTGTT
1 CCATTTTCACTCTCTCCAAAGTAAAT-TATCTTTTCCTCTTTTCTGTTC-ACGTTCAAGATTGTT
*
73903159 CAGCGATTAATTTTCACGCCAAGTAATTCTTTTT
64 CAGCGATTAATTTGCACGCCAAGTAATTCTTTTT
73903193 TTCCGTAATG
Statistics
Matches: 89, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
96 59 0.66
97 30 0.34
ACGTcount: A:0.22, C:0.23, G:0.10, T:0.45
Consensus pattern (98 bp):
CCATTTTCACTCTCTCCAAAGTAAATTATCTTTTCCTCTTTTCTGTTCACGTTCAAGATTGTTCA
GCGATTAATTTGCACGCCAAGTAATTCTTTTTC
Found at i:73907146 original size:17 final size:18
Alignment explanation
Indices: 73907114--73907150 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
73907104 ATAATTTTTA
73907114 ATAAAAATATAATTAATT
1 ATAAAAATATAATTAATT
*
73907132 ATAAAAATAT-TTTAATT
1 ATAAAAATATAATTAATT
73907149 AT
1 AT
73907151 TACAAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAAAAATATAATTAATT
Found at i:73907826 original size:94 final size:94
Alignment explanation
Indices: 73907719--73907889 Score: 299
Period size: 94 Copynumber: 1.8 Consensus size: 94
73907709 TAAGACCATT
* *
73907719 AATTAAGTCATTAATTATGAAGTCAATTTGTTCAT-TCAAAGTTCATATTGTGTCCAACAACATG
1 AATTAAGTCATTAATTATCAAGTCAATTTGTTC-TCTCAAAGTTCACATTGTGTCCAACAACATG
73907783 TATTACATGGTCACCCTTGAAATAACTACC
65 TATTACATGGTCACCCTTGAAATAACTACC
*
73907813 AATTAAGTCATTAATTATCAAGTCAATTTGTTCTCTCAAAGTTCACGTTGTGTCCAACAACATGT
1 AATTAAGTCATTAATTATCAAGTCAATTTGTTCTCTCAAAGTTCACATTGTGTCCAACAACATGT
73907878 ATTACATGGTCA
66 ATTACATGGTCA
73907890 AGCAATACTA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
93 1 0.01
94 72 0.99
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (94 bp):
AATTAAGTCATTAATTATCAAGTCAATTTGTTCTCTCAAAGTTCACATTGTGTCCAACAACATGT
ATTACATGGTCACCCTTGAAATAACTACC
Found at i:73908248 original size:21 final size:21
Alignment explanation
Indices: 73908222--73908261 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73908212 AAACGTGACA
73908222 AGTTAACTGACCACATCAGTT
1 AGTTAACTGACCACATCAGTT
* *
73908243 AGTTAACTGGCCACGTCAG
1 AGTTAACTGACCACATCAG
73908262 CGGTCCCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (21 bp):
AGTTAACTGACCACATCAGTT
Found at i:73913420 original size:29 final size:29
Alignment explanation
Indices: 73913375--73913430 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
73913365 TTGCAACTGA
*
73913375 GTAGTCTTCTCCGCTATCCTCAAGCTCGC
1 GTAGTCTTCTCCACTATCCTCAAGCTCGC
73913404 GTAGTCTTCTCCACTATCCTCAAGCTC
1 GTAGTCTTCTCCACTATCCTCAAGCTC
73913431 ACATCTATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.16, C:0.38, G:0.14, T:0.32
Consensus pattern (29 bp):
GTAGTCTTCTCCACTATCCTCAAGCTCGC
Found at i:73915044 original size:41 final size:41
Alignment explanation
Indices: 73914987--73915072 Score: 145
Period size: 41 Copynumber: 2.1 Consensus size: 41
73914977 GCAAAAATTG
* *
73914987 TAAAGACCAGAGCATTAGCAGCGCTTTTGGTAAAACGCTGC
1 TAAAGACCAGAGCATTACCAGCGCTTTTGGTAAAACGCCGC
*
73915028 TAAAGACCAGAGCATTACCGGCGCTTTTGGTAAAACGCCGC
1 TAAAGACCAGAGCATTACCAGCGCTTTTGGTAAAACGCCGC
73915069 TAAA
1 TAAA
73915073 AGTCATATAA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.21
Consensus pattern (41 bp):
TAAAGACCAGAGCATTACCAGCGCTTTTGGTAAAACGCCGC
Found at i:73915252 original size:14 final size:14
Alignment explanation
Indices: 73915230--73915361 Score: 65
Period size: 14 Copynumber: 9.2 Consensus size: 14
73915220 TTAATTATCA
*
73915230 TTATAGTTTAAGGT
1 TTATGGTTTAAGGT
*
73915244 TTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
73915258 ATATGGGTTCAAGGT
1 TTAT-GGTTTAAGGT
73915273 TTATGAG-TTAA---
1 TTATG-GTTTAAGGT
* *
73915284 CTATGGTTTAAGAT
1 TTATGGTTTAAGGT
* *
73915298 ATATGGTTTAGGGT
1 TTATGGTTTAAGGT
*
73915312 TTAAGGTTTAAGAGT
1 TTATGGTTTAAG-GT
* *
73915327 TAACTAGTATTTGAAGGT
1 TTA-T-G-GTTT-AAGGT
*
73915345 TTATGATTTAAGGT
1 TTATGGTTTAAGGT
73915359 TTA
1 TTA
73915362 GGGGTTGGGG
Statistics
Matches: 89, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
10 1 0.01
11 8 0.09
14 47 0.53
15 20 0.22
16 1 0.01
17 2 0.02
18 7 0.08
19 3 0.03
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.44
Consensus pattern (14 bp):
TTATGGTTTAAGGT
Found at i:73916306 original size:79 final size:79
Alignment explanation
Indices: 73916220--73916365 Score: 274
Period size: 79 Copynumber: 1.8 Consensus size: 79
73916210 GCGTTTATTT
*
73916220 AAAAAACGCCGCAAAAAACATAGCAGTTTAACGAAAACGGCGTCGTTTTAATTGGATATTTAGGG
1 AAAAAACGCCGCAAAAAACATACCAGTTTAACGAAAACGGCGTCGTTTTAATTGGATATTTAGGG
73916285 GAGGGTATTTTTTG
66 GAGGGTATTTTTTG
*
73916299 AAAAAACGCCGCAAAAAACATACCAGTTTAACGAAAACGGCGTCGTTTTAATTGGATTTTTAGGG
1 AAAAAACGCCGCAAAAAACATACCAGTTTAACGAAAACGGCGTCGTTTTAATTGGATATTTAGGG
73916364 GA
66 GA
73916366 ATGCCGGCGT
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 65 1.00
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (79 bp):
AAAAAACGCCGCAAAAAACATACCAGTTTAACGAAAACGGCGTCGTTTTAATTGGATATTTAGGG
GAGGGTATTTTTTG
Found at i:73918958 original size:46 final size:46
Alignment explanation
Indices: 73918891--73919065 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
73918881 TATAACCCGC
73918891 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
73918937 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * ** *
73918987 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
73919030 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
73919066 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.58
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:73919011 original size:93 final size:93
Alignment explanation
Indices: 73918899--73919069 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
73918889 GCCCATAAGT
** *
73918899 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
73918964 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
73918992 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
73919057 CGAGTTCGGATGC
66 CGAGCTCGGATGC
73919070 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:73922372 original size:148 final size:148
Alignment explanation
Indices: 73922099--73922395 Score: 567
Period size: 148 Copynumber: 2.0 Consensus size: 148
73922089 CTCGGAAATG
73922099 TTATGCAATAAATTGTAAAAAGGAGATTTATATGCACTCAAGGGTAAAATATTAGTATCTAATTG
1 TTATGCAATAAATTGTAAAAAGGAGATTTATATGCACTCAAGGGTAAAATATTAGTATCTAATTG
*
73922164 CAGCTTTTTGGCATATCCTTTTAAGTCGATAATAGCTAGTTACTGCTATGTTTGGAATAAGCTAC
66 CAGCTTTTTGGCATATCCTTTTAAGTCGATAACAGCTAGTTACTGCTATGTTTGGAATAAGCTAC
73922229 TTTAAACTTCCACAAGCT
131 TTTAAACTTCCACAAGCT
73922247 TTATGCAATAAATTGTAAAAAGGAGATTTATATGCACTCAAGGGTAAAATATTAGTATCTAATTG
1 TTATGCAATAAATTGTAAAAAGGAGATTTATATGCACTCAAGGGTAAAATATTAGTATCTAATTG
* *
73922312 CAGCTTTTTGGCATATCCTTTTAAGTCGATAACAGCTAGTTGCTGCTATGTTTGGCATAAGCTAC
66 CAGCTTTTTGGCATATCCTTTTAAGTCGATAACAGCTAGTTACTGCTATGTTTGGAATAAGCTAC
73922377 TTTAAACTTCCACAAGCT
131 TTTAAACTTCCACAAGCT
73922395 T
1 T
73922396 ATGATTAAGG
Statistics
Matches: 146, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 146 1.00
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (148 bp):
TTATGCAATAAATTGTAAAAAGGAGATTTATATGCACTCAAGGGTAAAATATTAGTATCTAATTG
CAGCTTTTTGGCATATCCTTTTAAGTCGATAACAGCTAGTTACTGCTATGTTTGGAATAAGCTAC
TTTAAACTTCCACAAGCT
Found at i:73923719 original size:183 final size:183
Alignment explanation
Indices: 73923404--73923735 Score: 628
Period size: 183 Copynumber: 1.8 Consensus size: 183
73923394 AGATTCAGCA
73923404 TCAGTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
1 TCAGTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
**
73923469 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTTTTTAAACTGAAATATATTTGGTGC
66 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
73923534 TACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTATT
131 TACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTATT
* *
73923587 TCAGTTGCTGCTTCCTGCTCCTCCTGCAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
1 TCAGTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
73923652 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
66 ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
73923717 TACTCTTATAATCTTACAT
131 TACTCTTATAATCTTACAT
73923736 CTGTTCTAGG
Statistics
Matches: 145, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 145 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.42
Consensus pattern (183 bp):
TCAGTTACTGCTTCCTGCTCCTCCTACAACTATTGGTTCAACTGAAGCTGCCATTTAATCTTCGA
ATTAATATTTGGTACTGATATAGATAAAGTTTTTATATTTGCTTAAACTGAAATATATTTGGTGC
TACTCTTATAATCTTACATGTGTCTGTATTAGTGAATTAATGTTGTATGTATT
Found at i:73923934 original size:10 final size:10
Alignment explanation
Indices: 73923919--73923947 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
73923909 GTGAGAGTGG
73923919 AGTATGAATA
1 AGTATGAATA
73923929 AGTATGAATA
1 AGTATGAATA
73923939 AGTATGAAT
1 AGTATGAAT
73923948 TAATTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.21, T:0.31
Consensus pattern (10 bp):
AGTATGAATA
Found at i:73924659 original size:9 final size:9
Alignment explanation
Indices: 73924636--73924763 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
73924626 ATTGATCATT
*
73924636 ACTTAAATA
1 ACTTACATA
*
73924645 AATTACATA
1 ACTTACATA
73924654 ACTTACATA
1 ACTTACATA
* *
73924663 ACTCATATA
1 ACTTACATA
73924672 ACTTACATA
1 ACTTACATA
*
73924681 ATTTACATAACA
1 ACTTACAT---A
73924693 ACTTACATA
1 ACTTACATA
*
73924702 ACTCACATA
1 ACTTACATA
73924711 ACTTACATA
1 ACTTACATA
*
73924720 ATTTACATA
1 ACTTACATA
*
73924729 ACTCACATA
1 ACTTACATA
*
73924738 ACGTACATAACA
1 ACTTACAT---A
73924750 ACTTACATA
1 ACTTACATA
73924759 ACTTA
1 ACTTA
73924764 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:73924705 original size:39 final size:39
Alignment explanation
Indices: 73924653--73924730 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
73924643 TAAATTACAT
*
73924653 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
73924692 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
73924731 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:73924730 original size:57 final size:57
Alignment explanation
Indices: 73924649--73924761 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
73924639 TAAATAAATT
* * **
73924649 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
73924706 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
73924762 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:73925053 original size:41 final size:41
Alignment explanation
Indices: 73924978--73925194 Score: 339
Period size: 41 Copynumber: 5.3 Consensus size: 41
73924968 CGTTCTAAAA
*
73924978 AAAACGCCGCTAAAAACC-GAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
* * *
73925018 AAAACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
*
73925059 AAAATGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTTC-GT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGC-TTTCGGT
* *
73925100 AAAACGTCGCTAAAAGCCATAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
73925141 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
1 AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
*
73925182 AAAACGCCACTAA
1 AAAACGCCGCTAA
73925195 GAATCTCATA
Statistics
Matches: 162, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
40 21 0.13
41 137 0.85
42 4 0.02
ACGTcount: A:0.32, C:0.26, G:0.24, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGCCAGAGCATTAGCGGCGCTTTCGGT
Found at i:73926269 original size:17 final size:17
Alignment explanation
Indices: 73926247--73926279 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
73926237 TTTAATTTAG
*
73926247 AAGATAAATGTATATAT
1 AAGATAAATATATATAT
73926264 AAGATAAATATATATA
1 AAGATAAATATATATA
73926280 AAATATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.09, T:0.33
Consensus pattern (17 bp):
AAGATAAATATATATAT
Found at i:73926319 original size:24 final size:24
Alignment explanation
Indices: 73926257--73926319 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
73926247 AAGATAAATG
* *
73926257 TATATATAAGATAAATATATATAAA
1 TATATATATGA-AAAAATATATAAA
* *
73926282 -ATATTATTTTAAAAAATATATAAA
1 TATA-TATATGAAAAAATATATAAA
73926306 TATATATATGAAAA
1 TATATATATGAAAA
73926320 GTGGTTTAGT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
24 23 0.77
25 7 0.23
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (24 bp):
TATATATATGAAAAAATATATAAA
Found at i:73928331 original size:60 final size:60
Alignment explanation
Indices: 73928258--73928380 Score: 237
Period size: 60 Copynumber: 2.0 Consensus size: 60
73928248 TTCTGTAGCC
*
73928258 TATCATGATAGTTATTCATTTCATATCCTCTACACATGCATACATGCATACACGTGTGTG
1 TATCATGATAGTTATTCATTTCATATCCTCTACACATGCATACATACATACACGTGTGTG
73928318 TATCATGATAGTTATTCATTTCATATCCTCTACACATGCATACATACATACACGTGTGTG
1 TATCATGATAGTTATTCATTTCATATCCTCTACACATGCATACATACATACACGTGTGTG
73928378 TAT
1 TAT
73928381 ATCATGGGAG
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.37
Consensus pattern (60 bp):
TATCATGATAGTTATTCATTTCATATCCTCTACACATGCATACATACATACACGTGTGTG
Found at i:73928517 original size:14 final size:14
Alignment explanation
Indices: 73928500--73928529 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
73928490 ATGCGTGTGA
73928500 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
73928514 TTTTCTTTTTCTTT
1 TTTTCTTTTTCTTT
73928528 TT
1 TT
73928530 GATAATTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTCTTTTTCTTT
Found at i:73930591 original size:21 final size:21
Alignment explanation
Indices: 73930562--73930601 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
73930552 GTTTTTATAT
*
73930562 TTTGGTTCAACTTAAGTATTA
1 TTTGATTCAACTTAAGTATTA
73930583 TTTGATTCAACTTAAGTAT
1 TTTGATTCAACTTAAGTAT
73930602 GAATTAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.47
Consensus pattern (21 bp):
TTTGATTCAACTTAAGTATTA
Done.