Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 240 of 259
Found at i:75298451 original size:5 final size:5
Alignment explanation
Indices: 75298441--75298470 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
75298431 AAACTAAAAG
*
75298441 TGAAT TGAAT TGAAT TAAAT TGAAT TGAAT
1 TGAAT TGAAT TGAAT TGAAT TGAAT TGAAT
75298471 GAAGAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (5 bp):
TGAAT
Found at i:75298575 original size:15 final size:14
Alignment explanation
Indices: 75298539--75298578 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
75298529 ATTTGATTGG
75298539 AAAATGAATT-AAA
1 AAAATGAATTAAAA
*
75298552 AATATGAATTAAATA
1 AAAATGAATTAAA-A
75298567 AAAATGAATTAA
1 AAAATGAATTAA
75298579 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 9 0.39
14 2 0.09
15 12 0.52
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAA
Found at i:75298950 original size:23 final size:23
Alignment explanation
Indices: 75298920--75299030 Score: 124
Period size: 23 Copynumber: 5.0 Consensus size: 23
75298910 GGCTTTGCCG
*
75298920 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTTATGTGTCGTAT
*
75298943 ATCAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTTATGTGTCGTAT
* **
75298966 TTCAGGCACCTCGTGTGTCG--T
1 ATCAGGCACCTTATGTGTCGTAT
**
75298987 ATCAGGCACCTCGTGTGTCGT-T
1 ATCAGGCACCTTATGTGTCGTAT
75299009 -TCAGGCA-CTTATGTGTCGTAT
1 ATCAGGCACCTTATGTGTCGTAT
75299030 A
1 A
75299031 CTGATCAGGT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.13
21 28 0.36
22 1 0.01
23 39 0.50
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (23 bp):
ATCAGGCACCTTATGTGTCGTAT
Found at i:75299005 original size:44 final size:41
Alignment explanation
Indices: 75298921--75299029 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 41
75298911 GCTTTGCCGA
* * *
75298921 TCAGGCACTTTATGTGTCGTATATCAGGCACTTTATGTGTCGTATT
1 TCAGGCAC-TCATGTGTCG--TATCAGGCACCTCATGTGTCG--TT
* *
75298967 TCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCGTT
1 TCAGGCA-CTCATGTGTCGTATCAGGCACCTCATGTGTCGTT
*
75299009 TCAGGCACTTATGTGTCGTAT
1 TCAGGCACTCATGTGTCGTAT
75299030 ACTGATCAGG
Statistics
Matches: 55, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
41 12 0.22
42 9 0.16
44 18 0.33
46 15 0.27
47 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.37
Consensus pattern (41 bp):
TCAGGCACTCATGTGTCGTATCAGGCACCTCATGTGTCGTT
Found at i:75300267 original size:21 final size:21
Alignment explanation
Indices: 75300243--75300283 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
75300233 CAACGTGGCA
75300243 AGTTAA-TTGGCCACATCAGCT
1 AGTTAACTT-GCCACATCAGCT
75300264 AGTTAACTTGCCACATCAGC
1 AGTTAACTTGCCACATCAGC
75300284 AGTCCTGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:75300780 original size:21 final size:21
Alignment explanation
Indices: 75300756--75300796 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
75300746 CAACGTGGCA
75300756 AGTTAA-TTGGCCACATCAGCT
1 AGTTAACTT-GCCACATCAGCT
75300777 AGTTAACTTGCCACATCAGC
1 AGTTAACTTGCCACATCAGC
75300797 AGTCCTGCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (21 bp):
AGTTAACTTGCCACATCAGCT
Found at i:75300810 original size:513 final size:513
Alignment explanation
Indices: 75299843--75300868 Score: 1998
Period size: 513 Copynumber: 2.0 Consensus size: 513
75299833 CTCAGCGTAC
75299843 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
1 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
75299908 TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
66 TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
75299973 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
131 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
75300038 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
196 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
*
75300103 GTACTATTCCTATATCAGGTTCCTCGAGTCAAACATGGTATAGGGGTGTTACAGTTTTGCCCTAA
261 GTACTATTCCTATATCAGGTTCCTCGAGTCAAACATGGTATAAGGGTGTTACAGTTTTGCCCTAA
*
75300168 ACCAACATAACCCTTCAGATTTTTTCCCTAAACCTACCCCAAACCTTGACCGATCAGCTGCTTCA
326 ACCAACATAACCCTTCAGATTTTTTCCCTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
75300233 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
391 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
75300298 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGACT
456 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGACT
75300356 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
1 GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
75300421 TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
66 TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
75300486 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
131 CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
75300551 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
196 ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
*
75300616 GTACTATTCCTATATCAGGTTCCTCGAGTCGAACATGGTATAAGGGTGTTACAGTTTTGCCCTAA
261 GTACTATTCCTATATCAGGTTCCTCGAGTCAAACATGGTATAAGGGTGTTACAGTTTTGCCCTAA
* * *
75300681 ACCAACGTAACCTTTCAGATTTTTTCCTTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
326 ACCAACATAACCCTTCAGATTTTTTCCCTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
75300746 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
391 CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
75300811 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGACT
456 CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGACT
75300869 ATTTTGTTAT
Statistics
Matches: 507, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
513 507 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (513 bp):
GGTTTGTTTCCGTGCGCAGATTAGGTACAAAAATTTTGAAGAGTTGTATTTGAGATTACGAGTCT
TCATCTCATCACATCTTCAAGCAACAAGGGGGTATGTTTTAAAATTTTGAATAGAATGACATGTA
CTTAAGGAAAAATTAAGTATGTCCCAAGTAGTAGTAATGGATTTAAATATAAATTATTTAAATTT
ATGATTTGTCTGTTTTTATGTTCAAATATAATAGTAATTAGCCAAGAATTACTTGGGCACCAAAT
GTACTATTCCTATATCAGGTTCCTCGAGTCAAACATGGTATAAGGGTGTTACAGTTTTGCCCTAA
ACCAACATAACCCTTCAGATTTTTTCCCTAAACCCACCCCAAACCTTGACCGATCAGCTGCTTCA
CAACGTGGCAAGTTAATTGGCCACATCAGCTAGTTAACTTGCCACATCAGCAGTCCTGCTAGTGT
CTTAATGGAAATTGTTAATCAGTGACTGTTTTGTCACTTTTTTATAACGCTAGTGACT
Found at i:75304697 original size:40 final size:40
Alignment explanation
Indices: 75304642--75304723 Score: 146
Period size: 40 Copynumber: 2.0 Consensus size: 40
75304632 TATTACAATT
75304642 GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
1 GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
* *
75304682 GTGGATTGCTTGGCCAAGTTGGGTTTTACATGGAATTTAA
1 GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
75304722 GT
1 GT
75304724 CTTCAAATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.37
Consensus pattern (40 bp):
GTGGATTGCTTGGCCAAGTTGGGTTTTAAATGGAATTCAA
Found at i:75307555 original size:43 final size:43
Alignment explanation
Indices: 75307499--75307582 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
75307489 ACAATGGTTA
* * *
75307499 TTAAATAAGGTTATTTGTATTTTGAGTATATTGTTTCATATTG
1 TTAAACAAAGTTATTTGTATTTTGAGTATATTGCTTCATATTG
75307542 TTAAACAAAGTTATTTGTATTTTGAGTATATTGCTTCATAT
1 TTAAACAAAGTTATTTGTATTTTGAGTATATTGCTTCATAT
75307583 GTTTTTTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.30, C:0.05, G:0.14, T:0.51
Consensus pattern (43 bp):
TTAAACAAAGTTATTTGTATTTTGAGTATATTGCTTCATATTG
Found at i:75309144 original size:11 final size:11
Alignment explanation
Indices: 75309117--75309150 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
75309107 TGTATTAAGC
*
75309117 TAAATAATAAT
1 TAAAAAATAAT
75309128 TAAAAAAATAAT
1 T-AAAAAATAAT
75309140 TAAAAAATAAT
1 TAAAAAATAAT
75309151 CTGGTATGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
TAAAAAATAAT
Found at i:75314286 original size:24 final size:24
Alignment explanation
Indices: 75314259--75314339 Score: 90
Period size: 24 Copynumber: 3.2 Consensus size: 24
75314249 TAATCTACAT
75314259 TATTTAAATTACTTGTGATCTTTA
1 TATTTAAATTACTTGTGATCTTTA
* * *
75314283 TATTTAAGTTAGGTCTCTCTACATCTTTA
1 TATTTAAATTA---CT-TGT-GATCTTTA
75314312 TATTTAAATTACTTGTGATCTTTA
1 TATTTAAATTACTTGTGATCTTTA
75314336 TATT
1 TATT
75314340 ATTCCACCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
24 21 0.46
25 2 0.04
26 2 0.04
27 2 0.04
28 2 0.04
29 17 0.37
ACGTcount: A:0.27, C:0.11, G:0.09, T:0.53
Consensus pattern (24 bp):
TATTTAAATTACTTGTGATCTTTA
Found at i:75317504 original size:18 final size:18
Alignment explanation
Indices: 75317481--75317516 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
75317471 CTTTTAAATG
*
75317481 ATATTTTATTAAGTAATA
1 ATATTTTAATAAGTAATA
*
75317499 ATATTTTAATAATTAATA
1 ATATTTTAATAAGTAATA
75317517 TTATAATACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (18 bp):
ATATTTTAATAAGTAATA
Found at i:75319537 original size:18 final size:18
Alignment explanation
Indices: 75319514--75319555 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
75319504 TATTAATAAT
75319514 ATTTATATTCATGC-TTTA
1 ATTTATATTCAT-CATTTA
* *
75319532 ATTTATTTTTATCATTTA
1 ATTTATATTCATCATTTA
75319550 ATTTAT
1 ATTTAT
75319556 GATCAATACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 20 0.95
ACGTcount: A:0.29, C:0.07, G:0.02, T:0.62
Consensus pattern (18 bp):
ATTTATATTCATCATTTA
Found at i:75321717 original size:33 final size:33
Alignment explanation
Indices: 75321675--75321743 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
75321665 GCTAAACCTT
75321675 TATCGACACAATAAAAGCTTGGCCAGGGTTGTA
1 TATCGACACAATAAAAGCTTGGCCAGGGTTGTA
75321708 TATCGACACAATAAAAGCTTGGCCAGGGTTGTA
1 TATCGACACAATAAAAGCTTGGCCAGGGTTGTA
75321741 TAT
1 TAT
75321744 ACATGTAAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.26
Consensus pattern (33 bp):
TATCGACACAATAAAAGCTTGGCCAGGGTTGTA
Found at i:75322568 original size:6 final size:6
Alignment explanation
Indices: 75322559--75322583 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
75322549 TCTTATTTTT
75322559 TAAATA TAAATA TAAATA TAAATA T
1 TAAATA TAAATA TAAATA TAAATA T
75322584 TTATTTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TAAATA
Found at i:75322751 original size:18 final size:18
Alignment explanation
Indices: 75322728--75322765 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
75322718 GAAGAAATAT
*
75322728 GATAAT-AATTAAAGGTAA
1 GATAATGAACTAAA-GTAA
75322746 GATAATGAACTAAAGTAA
1 GATAATGAACTAAAGTAA
75322764 GA
1 GA
75322766 ATGATTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.55, C:0.03, G:0.18, T:0.24
Consensus pattern (18 bp):
GATAATGAACTAAAGTAA
Found at i:75325341 original size:5 final size:5
Alignment explanation
Indices: 75325331--75325402 Score: 64
Period size: 5 Copynumber: 14.8 Consensus size: 5
75325321 TGTTAAAAAA
* *
75325331 ATATT ATATT ATAGTA ATGATT ATGTT -T-TT ATATT ATATT ATTATT
1 ATATT ATATT ATA-TT AT-ATT ATATT ATATT ATATT ATATT A-TATT
75325377 A-A-T ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATATT ATAT
75325403 ACATAAAACA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
3 4 0.07
4 8 0.14
5 32 0.57
6 11 0.20
7 1 0.02
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (5 bp):
ATATT
Found at i:75325384 original size:19 final size:19
Alignment explanation
Indices: 75325360--75325402 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
75325350 ATTATGTTTT
75325360 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
75325379 TATATTATATTATATTATA
1 TATATTATATTATATTATA
75325398 TATAT
1 TATAT
75325403 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:75325435 original size:18 final size:19
Alignment explanation
Indices: 75325407--75325446 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
75325397 ATATATACAT
*
75325407 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
75325426 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
75325444 AAA
1 AAA
75325447 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:75325942 original size:44 final size:45
Alignment explanation
Indices: 75325847--75325980 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
75325837 ACAGGACAGA
* *
75325847 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
75325893 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
75325937 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
75325981 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:75331021 original size:5 final size:5
Alignment explanation
Indices: 75331011--75331081 Score: 58
Period size: 5 Copynumber: 13.8 Consensus size: 5
75331001 TGTTAAAAAA
* *
75331011 ATATT ATATT ATAGTA ATGATT ATGTTTT ATATT ATATT ATTATT A-A-T
1 ATATT ATATT ATA-TT AT-ATT AT-AT-T ATATT ATATT A-TATT ATATT
75331059 ATATT ATATT ATATT ATA-T ATAT
1 ATATT ATATT ATATT ATATT ATAT
75331082 ACATAAAACA
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
3 2 0.04
4 6 0.11
5 29 0.53
6 14 0.25
7 4 0.07
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:75331061 original size:19 final size:19
Alignment explanation
Indices: 75331039--75331081 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
75331029 GATTATGTTT
75331039 TATATTATATTATTATTA-A
1 TATATTATATTA-TATTATA
75331058 TATATTATATTATATTATA
1 TATATTATATTATATTATA
75331077 TATAT
1 TATAT
75331082 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:75331065 original size:24 final size:23
Alignment explanation
Indices: 75331011--75331082 Score: 76
Period size: 24 Copynumber: 3.1 Consensus size: 23
75331001 TGTTAAAAAA
*
75331011 ATATTATATTATAGTAATGATTAT
1 ATATTATATTATA-TTATGATTAT
* * *
75331035 GTTTTATATTATATTATTATTAAT
1 ATATTATATTATATTATGATT-AT
75331059 ATATTATATTATATTAT-A-TAT
1 ATATTATATTATATTATGATTAT
75331080 ATA
1 ATA
75331083 CATAAAACAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
21 5 0.12
22 1 0.02
23 7 0.17
24 28 0.68
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (23 bp):
ATATTATATTATATTATGATTAT
Found at i:75331114 original size:18 final size:19
Alignment explanation
Indices: 75331086--75331125 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
75331076 ATATATACAT
*
75331086 AAAACAAAAGAAAGAATAG
1 AAAACAAAAGAAAGAAAAG
75331105 AAAA-AAAAGAAAGAAAAG
1 AAAACAAAAGAAAGAAAAG
75331123 AAA
1 AAA
75331126 CAGAATAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.80, C:0.03, G:0.15, T:0.03
Consensus pattern (19 bp):
AAAACAAAAGAAAGAAAAG
Found at i:75331621 original size:44 final size:45
Alignment explanation
Indices: 75331526--75331659 Score: 162
Period size: 44 Copynumber: 3.0 Consensus size: 45
75331516 ACAGGACAGA
* *
75331526 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
75331572 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * *
75331616 ACAGGAATAATTCATGTAAGTCCATGTTAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
75331660 CAGGATATTG
Statistics
Matches: 75, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
44 37 0.49
45 1 0.01
46 37 0.49
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:75337075 original size:7 final size:7
Alignment explanation
Indices: 75337063--75337107 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
75337053 TAGTATTTTC
*
75337063 TTATAAT
1 TTATTAT
*
75337070 TTATAAT
1 TTATTAT
75337077 TTATTAT
1 TTATTAT
75337084 TTATTA-
1 TTATTAT
75337090 TTATTAT
1 TTATTAT
*
75337097 CTATTAT
1 TTATTAT
75337104 TTAT
1 TTAT
75337108 AAAAATGATA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
6 6 0.18
7 28 0.82
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (7 bp):
TTATTAT
Found at i:75345850 original size:3 final size:3
Alignment explanation
Indices: 75345844--75345870 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
75345834 CTACTACTAC
75345844 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
75345871 AAGATGTATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:75346802 original size:14 final size:15
Alignment explanation
Indices: 75346771--75346805 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
75346761 TGATGACATT
*
75346771 AATAATAGATATTAA
1 AATAATAGATACTAA
75346786 AATAATA-ATACTAA
1 AATAATAGATACTAA
75346800 AATAAT
1 AATAAT
75346806 TAACTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (15 bp):
AATAATAGATACTAA
Found at i:75349456 original size:23 final size:23
Alignment explanation
Indices: 75349430--75349473 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
75349420 GTTATATTAT
*
75349430 GAAAT-GTTGGATTTTTTGTCATG
1 GAAATAGTT-GATTTATTGTCATG
75349453 GAAATAGTTGATTTATTGTCA
1 GAAATAGTTGATTTATTGTCA
75349474 CAAAATATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 16 0.84
24 3 0.16
ACGTcount: A:0.27, C:0.05, G:0.23, T:0.45
Consensus pattern (23 bp):
GAAATAGTTGATTTATTGTCATG
Found at i:75351269 original size:24 final size:24
Alignment explanation
Indices: 75351235--75351283 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
75351225 GTTTTGTTCA
*
75351235 TGACATTCCTTGCTGGTGAGAGTG
1 TGACATCCCTTGCTGGTGAGAGTG
75351259 TGACATCCCTTGCTGGTGAGAGTG
1 TGACATCCCTTGCTGGTGAGAGTG
75351283 T
1 T
75351284 AACACCCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.16, C:0.18, G:0.33, T:0.33
Consensus pattern (24 bp):
TGACATCCCTTGCTGGTGAGAGTG
Found at i:75354678 original size:75 final size:75
Alignment explanation
Indices: 75354550--75354701 Score: 268
Period size: 75 Copynumber: 2.0 Consensus size: 75
75354540 TATGAGATTA
* *
75354550 AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAGCAGCCA
1 AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
75354615 CAACATGATC
66 CAACATGATC
* *
75354625 AAGAGACCCCATCATTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
1 AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
75354690 CAACATGATC
66 CAACATGATC
75354700 AA
1 AA
75354702 ATTTTATCGT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 73 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (75 bp):
AAGAAACCCCATCAGTTCATCAACGGAGAGAACTGAAAGGTCTTTGGATTCTTCTATAACAACCA
CAACATGATC
Found at i:75355728 original size:380 final size:380
Alignment explanation
Indices: 75355027--75355787 Score: 1369
Period size: 380 Copynumber: 2.0 Consensus size: 380
75355017 TTGGTTTCTT
*
75355027 TCAATCTTTTTTCTTCTTCTTCATCAAGTTCAAGTATGTCAGCGAACCAGTACTCGACCAAGTCC
1 TCAATCTTTTTTCTTCTTCTTCATCAAGTTCAAGTATGTCAGCGAACCAGTACTCGACCAAATCC
*
75355092 CATAGCTCTTGTAATTTGAGCAATGTCTTCACCTTGATGCTTCACCACTCATATTTCTCACCATT
66 CATAGCTCTTGTAATTTGAGCAATGTCTTCACCTTGATGCTCCACCACTCATATTTCTCACCATT
* * *
75355157 AAAAATGGGTATGAGTGGTTGAGAGGAAGAAAAACCAGTTGATGCTATTCCAAGAACACACACTC
131 AAAAATGGGTATGAGTGGTTGAGAGGAAAAAAAACCAGCTGATACTATTCCAAGAACACACACTC
** * *
75355222 TCTTTTCTCGTGTTTCCCAAAGACCCAAAAAGGTGTTTCTCTCAAATACCTAATGGACCCAAACC
196 TCTCCTCTCGTATTTCCCAAAGACCCAAAAAGGTGTTTCTCTCAAATACCCAATGGACCCAAACC
75355287 TAACTTTCACTCAATTGCCTAAGAGATCGAACCTTGCTCTGATACCAAATTTATTGAAGAAGGAA
261 TAACTTTCACTCAATTGCCTAAGAGATCGAACCTTGCTCTGATACCAAATTTATTGAAGAAGGAA
* *
75355352 ACTTGAAAGAGACAATTATAATATGCATCAAAGTTATTCTATTATTGATAAACAC
326 ACGTGAAAGAGACAATTACAATATGCATCAAAGTTATTCTATTATTGATAAACAC
* * *
75355407 TCAATCTTTTTTCTTCTTCTTCATCAGGTTCAAGTATGTCAGCGAACCCGTACTCGACCAAATCT
1 TCAATCTTTTTTCTTCTTCTTCATCAAGTTCAAGTATGTCAGCGAACCAGTACTCGACCAAATCC
75355472 CATAGCTCTTGTAATTTGAGCAATGTCTTCACCTTGATGCTCCACCACTCATATTTCTCACCATT
66 CATAGCTCTTGTAATTTGAGCAATGTCTTCACCTTGATGCTCCACCACTCATATTTCTCACCATT
*
75355537 GAAAATGGGTATGAGTGGTTGAGAGGAAAAAAAACCAGCTGATACTATTCCAAGAACACACACTC
131 AAAAATGGGTATGAGTGGTTGAGAGGAAAAAAAACCAGCTGATACTATTCCAAGAACACACACTC
*
75355602 TCTCCTCTCGTATTTTCCAAAGACCCAAAAAGGTGTTTCTCTCAAATACCCAATGGACCCAAACC
196 TCTCCTCTCGTATTTCCCAAAGACCCAAAAAGGTGTTTCTCTCAAATACCCAATGGACCCAAACC
75355667 TAACTTTCACTCAATTGCCTAAGAGATCGAACCTTGCTCTGATACCAAATTTATTGAAGAAGGAA
261 TAACTTTCACTCAATTGCCTAAGAGATCGAACCTTGCTCTGATACCAAATTTATTGAAGAAGGAA
*
75355732 ACGTGAAAGAGATAATTACAATATGCATCAAAGTTATTCTATTATTGATAAACAC
326 ACGTGAAAGAGACAATTACAATATGCATCAAAGTTATTCTATTATTGATAAACAC
75355787 T
1 T
75355788 GAATTGCTAA
Statistics
Matches: 364, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
380 364 1.00
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (380 bp):
TCAATCTTTTTTCTTCTTCTTCATCAAGTTCAAGTATGTCAGCGAACCAGTACTCGACCAAATCC
CATAGCTCTTGTAATTTGAGCAATGTCTTCACCTTGATGCTCCACCACTCATATTTCTCACCATT
AAAAATGGGTATGAGTGGTTGAGAGGAAAAAAAACCAGCTGATACTATTCCAAGAACACACACTC
TCTCCTCTCGTATTTCCCAAAGACCCAAAAAGGTGTTTCTCTCAAATACCCAATGGACCCAAACC
TAACTTTCACTCAATTGCCTAAGAGATCGAACCTTGCTCTGATACCAAATTTATTGAAGAAGGAA
ACGTGAAAGAGACAATTACAATATGCATCAAAGTTATTCTATTATTGATAAACAC
Found at i:75367659 original size:101 final size:101
Alignment explanation
Indices: 75367531--75367735 Score: 383
Period size: 101 Copynumber: 2.0 Consensus size: 101
75367521 ATAATTCAAT
*
75367531 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCTTAATCAAAGCTTT
1 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAAGCTTT
75367596 CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
66 CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
*
75367632 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAATCTTT
1 AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAAGCTTT
*
75367697 CAACTTTTAAAATGGAAGTATTTGTAAGCAATACTC
66 CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
75367733 AAA
1 AAA
75367736 CTTCTATTTG
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
101 101 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.37
Consensus pattern (101 bp):
AAATTTAACCCTTCACATTTACAAATTCTATCAATTTGATTATCAAACTTCCTAATCAAAGCTTT
CAACTTTTAAAACGGAAGTATTTGTAAGCAATACTC
Found at i:75370601 original size:16 final size:16
Alignment explanation
Indices: 75370552--75370601 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
75370542 ATTACTTTTC
75370552 CCTCAAAACTTTTACT
1 CCTCAAAACTTTTACT
**
75370568 CCTTC-CCA-TTTT-CT
1 CC-TCAAAACTTTTACT
75370582 CCTCAAAACTTTTACT
1 CCTCAAAACTTTTACT
75370598 CCTC
1 CCTC
75370602 TTCCATCCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 8
0.68 0.11 0.21
Matches are distributed among these distances:
13 2 0.08
14 5 0.19
15 8 0.31
16 9 0.35
17 2 0.08
ACGTcount: A:0.22, C:0.38, G:0.00, T:0.40
Consensus pattern (16 bp):
CCTCAAAACTTTTACT
Found at i:75370755 original size:30 final size:30
Alignment explanation
Indices: 75370711--75370769 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
75370701 AACTTTTTAT
75370711 TTTCCCCCAAAATTTTTAC-TCCCTCCCAC
1 TTTCCCCCAAAATTTTTACTTCCCTCCCAC
*
75370740 TTTCCCCCTAAAATTTTTACTTCCTTCCCA
1 TTTCCCCC-AAAATTTTTACTTCCCTCCCA
75370770 TCCCACCTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 8 0.30
30 11 0.41
31 8 0.30
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (30 bp):
TTTCCCCCAAAATTTTTACTTCCCTCCCAC
Found at i:75374356 original size:30 final size:30
Alignment explanation
Indices: 75374315--75374440 Score: 189
Period size: 30 Copynumber: 4.2 Consensus size: 30
75374305 CTAGCCTTTG
75374315 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
75374345 CCCCCAACAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
75374375 CCACTACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
75374405 CCACCACCTACTCCATTAACCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
75374435 CCACCA
1 CCACCA
75374441 TCACTTGCCT
Statistics
Matches: 87, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 87 1.00
ACGTcount: A:0.26, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:75374378 original size:18 final size:18
Alignment explanation
Indices: 75374355--75374408 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
75374345 CCCCCAACAA
75374355 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
75374373 CTCCACT----AC-C-TA
1 CTCCACTAGCCACACTTG
75374385 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
75374403 CTCCAC
1 CTCCAC
75374409 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 8 0.29
13 1 0.04
14 2 0.07
16 2 0.07
17 1 0.04
18 14 0.50
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.22
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:75377013 original size:15 final size:15
Alignment explanation
Indices: 75376993--75377027 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
75376983 TAACTAATTT
*
75376993 AATAAATTAAAATAA
1 AATAAATAAAAATAA
75377008 AATAAATAAAAATAA
1 AATAAATAAAAATAA
75377023 AATAA
1 AATAA
75377028 TATCTTCCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (15 bp):
AATAAATAAAAATAA
Found at i:75381896 original size:61 final size:61
Alignment explanation
Indices: 75381826--75381949 Score: 178
Period size: 61 Copynumber: 2.0 Consensus size: 61
75381816 TTGTCCTACT
* * * * *
75381826 AATTAATTTTCTATATTATTTCAACGGATT-TTTTACAAGTATTTTATATTCATCATTTTTA
1 AATTAATTTTCTATATTATTTCAACAGATTCTTCT-CAAGTATTATATATACATAATTTTTA
*
75381887 AATTAATTTTCTGTATTATTTCAACAGATTCTTCTCAAGTATTATATATACATAATTTTTA
1 AATTAATTTTCTATATTATTTCAACAGATTCTTCTCAAGTATTATATATACATAATTTTTA
75381948 AA
1 AA
75381950 ATTTATTCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
61 53 0.95
62 3 0.05
ACGTcount: A:0.34, C:0.10, G:0.05, T:0.51
Consensus pattern (61 bp):
AATTAATTTTCTATATTATTTCAACAGATTCTTCTCAAGTATTATATATACATAATTTTTA
Found at i:75381988 original size:16 final size:16
Alignment explanation
Indices: 75381967--75382000 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
75381957 CAAAAACAAG
75381967 TTTTATATATACATTA
1 TTTTATATATACATTA
* *
75381983 TTTTATATGTGCATTA
1 TTTTATATATACATTA
75381999 TT
1 TT
75382001 ATATTTACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.59
Consensus pattern (16 bp):
TTTTATATATACATTA
Found at i:75386988 original size:105 final size:105
Alignment explanation
Indices: 75386879--75387075 Score: 349
Period size: 105 Copynumber: 1.9 Consensus size: 105
75386869 ATAAAAAAAA
75386879 TTACCTTATAGATTAAATTAATTTATAAAATTAAAATTTAAAATATAAAAATAACGTGTAGAAAT
1 TTACCTTATAGATTAAATTAATTTATAAAATTAAAATTTAAAATATAAAAATAACGTGTAGAAAT
* *
75386944 TACGTCTATAAATTAAATTTATAAATATACTACTCGTTAT
66 AACATCTATAAATTAAATTTATAAATATACTACTCGTTAT
* *
75386984 TTACCTTATAGATTAAATTAATTTATAAAATTAAATTTTAAAATATAAAAATAATGTGTAGAAAT
1 TTACCTTATAGATTAAATTAATTTATAAAATTAAAATTTAAAATATAAAAATAACGTGTAGAAAT
*
75387049 AACATTTATAAATTAAATTTATAAATA
66 AACATCTATAAATTAAATTTATAAATA
75387076 ATTTTTTTGG
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
105 87 1.00
ACGTcount: A:0.50, C:0.06, G:0.05, T:0.40
Consensus pattern (105 bp):
TTACCTTATAGATTAAATTAATTTATAAAATTAAAATTTAAAATATAAAAATAACGTGTAGAAAT
AACATCTATAAATTAAATTTATAAATATACTACTCGTTAT
Found at i:75399202 original size:13 final size:13
Alignment explanation
Indices: 75399184--75399213 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
75399174 ACTCACTCTC
*
75399184 TTCTTTTTTCTTT
1 TTCTTTTTCCTTT
75399197 TTCTTTTTCCTTT
1 TTCTTTTTCCTTT
75399210 TTCT
1 TTCT
75399214 AGTTTCGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTCTTTTTCCTTT
Found at i:75403801 original size:33 final size:33
Alignment explanation
Indices: 75403759--75403824 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
75403749 CATATGCAAC
75403759 TTTATGAATTAAGTATACCTGAGTTGGATTACA
1 TTTATGAATTAAGTATACCTGAGTTGGATTACA
75403792 TTTATGAATTAAGTATACCTGAGTTGGATTACA
1 TTTATGAATTAAGTATACCTGAGTTGGATTACA
75403825 AAATGTTATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.39
Consensus pattern (33 bp):
TTTATGAATTAAGTATACCTGAGTTGGATTACA
Found at i:75405911 original size:10 final size:10
Alignment explanation
Indices: 75405892--75405923 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
75405882 AACAGAGAAA
75405892 AAAAAAAAAG
1 AAAAAAAAAG
*
75405902 AAAAAGAAAG
1 AAAAAAAAAG
75405912 AAAAAAAAAG
1 AAAAAAAAAG
75405922 AA
1 AA
75405924 GCTTTCTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:75413855 original size:8 final size:8
Alignment explanation
Indices: 75413842--75413870 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
75413832 TTATGTTTAG
75413842 TATATTAT
1 TATATTAT
75413850 TATATTAT
1 TATATTAT
75413858 TATATTAT
1 TATATTAT
75413866 TATAT
1 TATAT
75413871 AATAAAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (8 bp):
TATATTAT
Found at i:75413903 original size:5 final size:5
Alignment explanation
Indices: 75413893--75413928 Score: 56
Period size: 5 Copynumber: 7.4 Consensus size: 5
75413883 TTATGTTTTA
*
75413893 ATTAT ATTAT ATTAT ATTAT ACTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
75413929 AAACTAAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (5 bp):
ATTAT
Found at i:75415219 original size:15 final size:15
Alignment explanation
Indices: 75415199--75415255 Score: 89
Period size: 15 Copynumber: 3.9 Consensus size: 15
75415189 CGATGAATTT
75415199 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
75415214 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
75415229 ATTGAATTTATATTG
1 ATTGAATTTATATTG
75415244 ATTGAA-TTATAT
1 ATTGAATTTATAT
75415256 AATATATATG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
14 6 0.16
15 32 0.84
ACGTcount: A:0.35, C:0.00, G:0.12, T:0.53
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:75415657 original size:23 final size:23
Alignment explanation
Indices: 75415627--75415713 Score: 83
Period size: 21 Copynumber: 4.0 Consensus size: 23
75415617 GCTTTATCGA
* * *
75415627 TCAGGCACTTTATGTGTCATATT
1 TCAGGCACCTCATGTGTCGTATT
*
75415650 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACCTCATGTGTCGTATT
*
75415671 TCAGGCACCTCGTGTGTCGT-TT
1 TCAGGCACCTCATGTGTCGTATT
* *
75415693 T-AGGCACTTTATGTGTCGTAT
1 TCAGGCACCTCATGTGTCGTAT
75415714 ACTGATCAGG
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
21 35 0.65
22 2 0.04
23 17 0.31
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (23 bp):
TCAGGCACCTCATGTGTCGTATT
Found at i:75420003 original size:6 final size:6
Alignment explanation
Indices: 75419992--75420017 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
75419982 ACACCGTAGG
75419992 GTAACA GTAACA GTAACA GTAACA GT
1 GTAACA GTAACA GTAACA GTAACA GT
75420018 CATAGTCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:75423606 original size:14 final size:14
Alignment explanation
Indices: 75423587--75423616 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
75423577 TATCTTATAA
75423587 ATATGCGTGAATCT
1 ATATGCGTGAATCT
*
75423601 ATATGCGTTAATCT
1 ATATGCGTGAATCT
75423615 AT
1 AT
75423617 CTTGAAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (14 bp):
ATATGCGTGAATCT
Found at i:75425915 original size:22 final size:23
Alignment explanation
Indices: 75425887--75425935 Score: 66
Period size: 22 Copynumber: 2.1 Consensus size: 23
75425877 AGTATTTTCG
75425887 TTATTTTATT-TCACTTT-AAATA
1 TTATTTTATTATCA-TTTAAAATA
75425909 TTATTTTATTATCATTTACAAATA
1 TTATTTTATTATCATTTA-AAATA
75425933 TTA
1 TTA
75425936 GTGTATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 13 0.54
23 3 0.12
24 8 0.33
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (23 bp):
TTATTTTATTATCATTTAAAATA
Found at i:75426092 original size:3 final size:3
Alignment explanation
Indices: 75426079--75426145 Score: 55
Period size: 3 Copynumber: 21.7 Consensus size: 3
75426069 TTTTCTTTTG
* ** *
75426079 TAT TTT TAT TAT TAT TGC TAT TAT TGT TAT TAT TAT TATT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
*
75426125 TA- TATT TAT ATAA TAT TAT TA
1 TAT TA-T TAT -TAT TAT TAT TA
75426146 ATAGGTACTT
Statistics
Matches: 50, Mismatches: 10, Indels: 8
0.74 0.15 0.12
Matches are distributed among these distances:
2 2 0.04
3 41 0.82
4 7 0.14
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:75426411 original size:24 final size:22
Alignment explanation
Indices: 75426384--75426441 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
75426374 TAGTGTGTTT
75426384 TATTATATGTATATATACTCTCAA
1 TATTATAT-TAT-TATACTCTCAA
* *
75426408 TATTATATTCTTATACTCTTAA
1 TATTATATTATTATACTCTCAA
**
75426430 TACCATATTATT
1 TATTATATTATT
75426442 CTTATTATTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
22 19 0.66
23 2 0.07
24 8 0.28
ACGTcount: A:0.34, C:0.14, G:0.02, T:0.50
Consensus pattern (22 bp):
TATTATATTATTATACTCTCAA
Found at i:75430705 original size:17 final size:18
Alignment explanation
Indices: 75430675--75430712 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
75430665 CCTCCCTCTC
*
75430675 TTTTCCTCTCGTTTTTCT
1 TTTTCCTCTCGTTTTCCT
*
75430693 TTTTCTTCT-GTTTTCCT
1 TTTTCCTCTCGTTTTCCT
75430710 TTT
1 TTT
75430713 ATGTTTGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (18 bp):
TTTTCCTCTCGTTTTCCT
Found at i:75435461 original size:17 final size:20
Alignment explanation
Indices: 75435431--75435466 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
75435421 AATATTTATA
75435431 TTTATTATACAA-TTATTTT
1 TTTATTATACAATTTATTTT
75435450 TTTATTA-A-AATTTATTT
1 TTTATTATACAATTTATTT
75435467 CAAATATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
17 2 0.12
18 7 0.44
19 7 0.44
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTATTATACAATTTATTTT
Found at i:75438511 original size:26 final size:25
Alignment explanation
Indices: 75438441--75438516 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
75438431 TGGTGTAGTA
* *
75438441 TTTTAAGATTATATTATGTAA-TTTT
1 TTTTAAAATTATA-TATATAATTTTT
* * *
75438466 TTTT-AATTTTTA-ATAAAATTTATT
1 TTTTAAAATTATATATATAATTT-TT
75438490 TTTTAAAATTATATATATAATTTTT
1 TTTTAAAATTATATATATAATTTTT
75438515 TT
1 TT
75438517 AAATAATTTC
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
22 4 0.10
23 2 0.05
24 11 0.28
25 14 0.36
26 8 0.21
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (25 bp):
TTTTAAAATTATATATATAATTTTT
Found at i:75438684 original size:41 final size:41
Alignment explanation
Indices: 75438606--75438685 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 41
75438596 GGAGGATAAT
* * *
75438606 ACGCTTCATCACAATTTAACCCATATATTCCTGTATTGAAA
1 ACGCTTCAGCACAATCTAACCCATATATTCCTATATTGAAA
* * *
75438647 ACGCTTCAGCACAGTCTAACCCATATCTTCTTATATTGA
1 ACGCTTCAGCACAATCTAACCCATATATTCCTATATTGA
75438686 CATTTGACAA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.31, C:0.26, G:0.09, T:0.34
Consensus pattern (41 bp):
ACGCTTCAGCACAATCTAACCCATATATTCCTATATTGAAA
Found at i:75438754 original size:20 final size:20
Alignment explanation
Indices: 75438729--75438770 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
75438719 GACTTAATCA
75438729 ACTATAAATTTTAAGTGAAG
1 ACTATAAATTTTAAGTGAAG
75438749 ACTATAAATTTTAAGTGAAG
1 ACTATAAATTTTAAGTGAAG
75438769 AC
1 AC
75438771 ATGACATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.33
Consensus pattern (20 bp):
ACTATAAATTTTAAGTGAAG
Found at i:75438788 original size:24 final size:20
Alignment explanation
Indices: 75438729--75438785 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 20
75438719 GACTTAATCA
*
75438729 ACTATAAATTTTAAGTGAAG
1 ACTACAAATTTTAAGTGAAG
*
75438749 ACTATAAATTTTAAGTGAAG
1 ACTACAAATTTTAAGTGAAG
75438769 ACATGACATAATTTTAA
1 AC-T-ACA-AATTTTAA
75438786 AGTATGGTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 22 0.67
21 1 0.03
22 2 0.06
23 8 0.24
ACGTcount: A:0.46, C:0.07, G:0.12, T:0.35
Consensus pattern (20 bp):
ACTACAAATTTTAAGTGAAG
Found at i:75450265 original size:25 final size:26
Alignment explanation
Indices: 75450236--75450293 Score: 79
Period size: 23 Copynumber: 2.4 Consensus size: 26
75450226 AAATTAATGA
75450236 AATATTTAAAATATATTTTT-TAATT
1 AATATTTAAAATATATTTTTATAATT
*
75450261 AATATTT--TATATATTTTTATAATT
1 AATATTTAAAATATATTTTTATAATT
75450285 AA-ATTTAAA
1 AATATTTAAA
75450294 TAATAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 14 0.50
24 7 0.25
25 7 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (26 bp):
AATATTTAAAATATATTTTTATAATT
Found at i:75451019 original size:15 final size:16
Alignment explanation
Indices: 75450999--75451028 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
75450989 TGGTATAATA
75450999 AAATAT-TAAAAAAAT
1 AAATATATAAAAAAAT
75451014 AAATATATAAAAAAA
1 AAATATATAAAAAAA
75451029 GAGAGAGAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AAATATATAAAAAAAT
Found at i:75466082 original size:21 final size:21
Alignment explanation
Indices: 75466058--75466104 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
75466048 CTTTTTAGGT
* *
75466058 TTTTAAAT-TTGTTTTTCTTTA
1 TTTTAAATATTCTTTTT-TTGA
*
75466079 TTTTCAATATTCTTTTTTTGA
1 TTTTAAATATTCTTTTTTTGA
75466100 TTTTA
1 TTTTA
75466105 TTTTTTATAC
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.19, C:0.06, G:0.04, T:0.70
Consensus pattern (21 bp):
TTTTAAATATTCTTTTTTTGA
Found at i:75467659 original size:16 final size:18
Alignment explanation
Indices: 75467628--75467660 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
75467618 TATATATTAT
75467628 TAATAAGAATTAAATATG
1 TAATAAGAATTAAATATG
75467646 TAATAA-AA-TAAATAT
1 TAATAAGAATTAAATAT
75467661 TTATTGTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (18 bp):
TAATAAGAATTAAATATG
Found at i:75468496 original size:29 final size:30
Alignment explanation
Indices: 75468463--75468523 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 30
75468453 ATAATGAAAC
*
75468463 AATTAACTAAAATAAT-TATTTAA-AAAGTA
1 AATTAAAT-AAATAATCTATTTAATAAAGTA
* *
75468492 AATTAAATCAATAATCTATTTAATAAATTA
1 AATTAAATAAATAATCTATTTAATAAAGTA
75468522 AA
1 AA
75468524 AACACTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 6 0.22
29 14 0.52
30 7 0.26
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (30 bp):
AATTAAATAAATAATCTATTTAATAAAGTA
Found at i:75469281 original size:27 final size:32
Alignment explanation
Indices: 75469224--75469286 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 32
75469214 AAGCAATATT
*
75469224 TTTTATTTAATTATAATATATATTTTTTAAAA
1 TTTTATTTAATTATAATATATATTTTATAAAA
75469256 TTTTATTT-ATT-TAA-A-ATA-TTTATAAAA
1 TTTTATTTAATTATAATATATATTTTATAAAA
75469283 TTTT
1 TTTT
75469287 GCAAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 12 0.40
28 3 0.10
29 1 0.03
30 3 0.10
31 3 0.10
32 8 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (32 bp):
TTTTATTTAATTATAATATATATTTTATAAAA
Found at i:75469824 original size:26 final size:26
Alignment explanation
Indices: 75469783--75469857 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
75469773 CCTTTAAAAA
* *
75469783 AAAAGAGTCAAGCTTAATTTTTTTTAT
1 AAAA-AGTCAAACTTAATTTTTTTGAT
75469810 AAAAAGTCAAACTTAA-TTTTTTGAT
1 AAAAAGTCAAACTTAATTTTTTTGAT
* *
75469835 ACAGAAGGTCAAACTTAGTTTTT
1 A-A-AAAGTCAAACTTAATTTTT
75469858 GATTCTTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 9 0.22
26 12 0.29
27 16 0.39
28 4 0.10
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (26 bp):
AAAAAGTCAAACTTAATTTTTTTGAT
Found at i:75478102 original size:62 final size:62
Alignment explanation
Indices: 75478036--75478219 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
75478026 TACGTATCTC
*
75478036 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
75478098 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
75478160 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
75478220 TCAAGTTTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:75479474 original size:23 final size:22
Alignment explanation
Indices: 75479447--75479502 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
75479437 TTAGTGGAGG
75479447 CCAAAAAAAAGAACAAATA-AAAA
1 CCAAAAAAAA-AACAAA-ACAAAA
*
75479470 CCAAATAAAAAACAAAAGCAAAA
1 CCAAAAAAAAAACAAAA-CAAAA
*
75479493 ACAAAAAAAA
1 CCAAAAAAAA
75479503 CTCTACCAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
21 1 0.04
22 6 0.21
23 21 0.75
ACGTcount: A:0.79, C:0.14, G:0.04, T:0.04
Consensus pattern (22 bp):
CCAAAAAAAAAACAAAACAAAA
Found at i:75479476 original size:11 final size:11
Alignment explanation
Indices: 75479448--75479502 Score: 51
Period size: 12 Copynumber: 4.9 Consensus size: 11
75479438 TAGTGGAGGC
*
75479448 CAAAAAAAAGAA
1 CAAATAAAA-AA
*
75479460 CAAATAAAAAC
1 CAAATAAAAAA
75479471 CAAATAAAAAA
1 CAAATAAAAAA
75479482 CAAA-AGCAAAAA
1 CAAATA--AAAAA
75479494 CAAA-AAAAA
1 CAAATAAAAA
75479503 CTCTACCAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
10 5 0.13
11 15 0.39
12 18 0.47
ACGTcount: A:0.80, C:0.13, G:0.04, T:0.04
Consensus pattern (11 bp):
CAAATAAAAAA
Found at i:75479936 original size:10 final size:10
Alignment explanation
Indices: 75479921--75479953 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
75479911 CTTCACTCGA
75479921 AAAAAGAAAC
1 AAAAAGAAAC
*
75479931 AAAAAGGAAC
1 AAAAAGAAAC
75479941 AAAAAGAAA-
1 AAAAAGAAAC
75479950 AAAA
1 AAAA
75479954 GGAGAGGCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.19
10 17 0.81
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAC
Found at i:75481259 original size:189 final size:190
Alignment explanation
Indices: 75480933--75481507 Score: 1064
Period size: 189 Copynumber: 3.0 Consensus size: 190
75480923 GCAGCGAAGC
75480933 AGATCAAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
75480998 TCTCCCTGCATTTGGCAGTGGAATAGATTGAA-ATCAAAGATGGCAGATTTTACCTCCCTGACTA
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
75481062 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
130 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
*
75481123 AGATCAAAGATGGCAGATTTTACCTCCCTGACTATAGTGGAGTACATTGAAG-CGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75481187 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
66 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
*
75481252 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTACATTTGGCAGTGGAATAGATTGA
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
75481312 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
75481377 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC--CTGACT
*
75481442 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
129 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
75481504 AGAT
1 AGAT
75481508 TGCAGATCTT
Statistics
Matches: 374, Mismatches: 7, Indels: 6
0.97 0.02 0.02
Matches are distributed among these distances:
188 43 0.11
189 189 0.51
190 73 0.20
192 69 0.18
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (190 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:75481338 original size:95 final size:95
Alignment explanation
Indices: 75480933--75481507 Score: 1064
Period size: 95 Copynumber: 6.0 Consensus size: 95
75480923 GCAGCGAAGC
75480933 AGATCAAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
75480998 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
75481029 A-ATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75481093 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
75481123 AGATCAAAGATGGCAGATTTTACCTCCCTGACTATAGTGGAGTACATTGAAG-CGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75481187 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
75481217 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75481282 CTCCCTACATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
75481312 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75481377 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
75481407 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
75481472 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGCATTTGGCAGTGGAATAGATTGA
75481504 AGAT
1 AGAT
75481508 TGCAGATCTT
Statistics
Matches: 469, Mismatches: 6, Indels: 7
0.97 0.01 0.01
Matches are distributed among these distances:
94 184 0.39
95 213 0.45
96 1 0.00
97 71 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:75481563 original size:231 final size:231
Alignment explanation
Indices: 75481312--75481873 Score: 1052
Period size: 231 Copynumber: 2.4 Consensus size: 231
75481302 AATAGATTGA
75481312 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75481377 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
*
75481442 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
*
75481507 TTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAGC
196 TTGCAGATCTTGCATTCCTGTATTTGACAGCGAAGC
*
75481543 AGATCAAAGATGGTAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75481608 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
75481673 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
*
75481738 TTGCAGATCTTGCCTTCCTGTATTTGACAGCGAAGC
196 TTGCAGATCTTGCATTCCTGTATTTGACAGCGAAGC
* * *
75481774 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
75481839 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
75481874 TGCAGATCTG
Statistics
Matches: 322, Mismatches: 8, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
231 232 0.72
232 90 0.28
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (231 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
TTGCAGATCTTGCATTCCTGTATTTGACAGCGAAGC
Found at i:75481628 original size:45 final size:45
Alignment explanation
Indices: 75481577--75481736 Score: 117
Period size: 45 Copynumber: 3.4 Consensus size: 45
75481567 TCCCTGACTA
*
75481577 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * * *
75481622 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGA-CT-A
1 CAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGT-ATTTGG
* *
75481674 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
*
75481719 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
75481737 ATTGCAGATC
Statistics
Matches: 83, Mismatches: 21, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
43 1 0.01
44 11 0.13
45 33 0.40
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.20
53 12 0.14
54 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (45 bp):
CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:75481641 original size:88 final size:89
Alignment explanation
Indices: 75481523--75481745 Score: 279
Period size: 97 Copynumber: 2.4 Consensus size: 89
75481513 ATCTTGCATT
* * ** *
75481523 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGTAGATTTTACCTCC-CTGACTACAGTGGAGT
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGT
75481586 ACATTGAAGCCGATAACTCTATCTC
65 ACATTGAAGCCGATAACTCTATCTC
*
75481611 CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACA
1 CCTGTATTTGGCAGTGGAATAGATT---G----AAGATGGCAGATTTTACCTCCA-CTGACTACA
75481676 GTGGAGTACATTGAAGCCGATAACTCTATCTC
58 GTGGAGTACATTGAAGCCGATAACTCTATCTC
* *
75481708 CCAGTATTTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGAT
75481746 CTTGCCTTCC
Statistics
Matches: 117, Mismatches: 8, Indels: 18
0.82 0.06 0.13
Matches are distributed among these distances:
88 18 0.15
89 3 0.03
90 11 0.09
94 1 0.01
95 20 0.17
97 64 0.55
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (89 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTA
CATTGAAGCCGATAACTCTATCTC
Found at i:75481657 original size:95 final size:96
Alignment explanation
Indices: 75481543--75481738 Score: 349
Period size: 97 Copynumber: 2.0 Consensus size: 96
75481533 GCAGCGAAGC
*
75481543 AGATCAAAGATGGTAGATTTTACCTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
75481607 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 TCTCCCAGTATTTGGCAGTGGAATAGATTGA
*
75481638 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCCA-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
75481703 ATCTCCCAGTATTTGGCAGTGGAATAGATTGA
65 ATCTCCCAGTATTTGGCAGTGGAATAGATTGA
75481735 AGAT
1 AGAT
75481739 TGCAGATCTT
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 26 0.27
97 70 0.73
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (96 bp):
AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCAGTATTTGGCAGTGGAATAGATTGA
Found at i:75481984 original size:134 final size:134
Alignment explanation
Indices: 75481638--75482246 Score: 1011
Period size: 134 Copynumber: 4.5 Consensus size: 134
75481628 AATAGATTGA
* *
75481638 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCGATAACTCT
* *
75481703 ATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGACAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
75481768 CGAAGC
129 CGAAGC
* *
75481774 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
*
75481839 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTGGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
75481904 GAAGC
130 GAAGC
75481909 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75481974 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
75482039 AAGC
131 AAGC
75482043 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75482108 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
75482173 AAGC
131 AAGC
* ** * * ** * * **
75482177 AGGTTGAAGACGGCGGATTTTACCTCCCTGATTATAGTGGAGTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
75482242 CTCCC
66 CTCCC
75482247 GGGGCAAGAA
Statistics
Matches: 448, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
134 316 0.71
135 105 0.23
136 5 0.01
137 22 0.05
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:75482035 original size:46 final size:46
Alignment explanation
Indices: 75481840--75482170 Score: 149
Period size: 46 Copynumber: 7.4 Consensus size: 46
75481830 ATAATTCTAT
* **
75481840 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTGGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
* * * * * *
75481886 CTTCCTGTATTTGGCAG-CGAAGCAGA-TCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAA-ATTGCAGATCTTAC
*** * * * *
75481932 CTCCCTG-A--CCACAGTGGAGTACATTG--AA--GCCGATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGAT--CT-TAC
*
75481974 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
* * * * * *
75482020 CTTCCTGTATTTGGCAG-CGAAGCAGA-TCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAA-ATTGCAGATCTTAC
*** * * * *
75482066 CTCCCTG-A--CCACAGTGGAGTACATTG--AA--GCCGATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGAT--CT-TAC
* *
75482108 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
*
75482154 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
75482171 CAAAGCAGGT
Statistics
Matches: 199, Mismatches: 58, Indels: 56
0.64 0.19 0.18
Matches are distributed among these distances:
39 10 0.05
41 4 0.02
42 20 0.10
43 12 0.06
44 6 0.03
45 41 0.21
46 89 0.45
47 7 0.04
49 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
Found at i:75482491 original size:132 final size:132
Alignment explanation
Indices: 75482254--75483030 Score: 1392
Period size: 132 Copynumber: 5.9 Consensus size: 132
75482244 CCCGGGGCAA
* *
75482254 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATAGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
75482319 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75482384 GT
131 GT
*
75482386 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
75482451 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75482516 GT
131 GT
*
75482518 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
*
75482583 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75482648 GT
131 GT
* *
75482650 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
*
75482715 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75482780 GT
131 GT
* *
75482782 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
*
75482847 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75482912 GT
131 GT
* * * *
75482914 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
* * *
75482979 TCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAATCAGATCTTGTC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC
75483031 CCTGTATTTG
Statistics
Matches: 632, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 632 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:75487084 original size:62 final size:62
Alignment explanation
Indices: 75487018--75487201 Score: 323
Period size: 62 Copynumber: 3.0 Consensus size: 62
75487008 TACGTATCTC
*
75487018 TTCATTCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
*
75487080 TTCATGCATTAACATTACATTTTATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
* * *
75487142 TTCATGCATCAACATTACATTTCATTGCATACAATAAATTTCCTAAAATCCAAAAGTACG
1 TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACG
75487202 TCAAGTTTAG
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 116 1.00
ACGTcount: A:0.41, C:0.21, G:0.05, T:0.33
Consensus pattern (62 bp):
TTCATGCATTAACATTACATTTCATTACATACAATAAATTTCCTAAAATCCAAAAATACGCG
Found at i:75488461 original size:11 final size:11
Alignment explanation
Indices: 75488438--75488487 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
75488428 AGGCCAAAAA
75488438 AAAAGAACAAAT
1 AAAA-AACAAAT
*
75488450 AAAAACCAAAT
1 AAAAAACAAAT
75488461 AAAAAACAAA-
1 AAAAAACAAAT
75488471 AGCAAAAACAAA-
1 A--AAAAACAAAT
75488483 AAAAA
1 AAAAA
75488488 CTCTACCAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 5 0.15
11 15 0.44
12 14 0.41
ACGTcount: A:0.80, C:0.12, G:0.04, T:0.04
Consensus pattern (11 bp):
AAAAAACAAAT
Found at i:75490089 original size:95 final size:95
Alignment explanation
Indices: 75489920--75490495 Score: 1073
Period size: 95 Copynumber: 6.0 Consensus size: 95
75489910 GCAGCGAAGC
75489920 AGATCAAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
75489985 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGA
75490016 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75490081 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
75490111 AGATCAAAGATGGCAGATTTTACCTCCCTGACTATAGTGGAGTACATTGAAG-CGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75490175 CTCCCTGCATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
75490205 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75490270 CTCCCTACATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
75490300 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75490365 CTCCCTGTATTTGGCAGTGGAATAGATTGA
66 CTCCCTGCATTTGGCAGTGGAATAGATTGA
*
75490395 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
*
75490460 ATCTCCCTGTATTTGGCAGTGGAATAGATTGA
64 ATCTCCCTGCATTTGGCAGTGGAATAGATTGA
75490492 AGAT
1 AGAT
75490496 TGCAGATCTT
Statistics
Matches: 471, Mismatches: 6, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
94 93 0.20
95 302 0.64
96 5 0.01
97 71 0.15
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:75490247 original size:189 final size:190
Alignment explanation
Indices: 75489920--75490495 Score: 1073
Period size: 189 Copynumber: 3.0 Consensus size: 190
75489910 GCAGCGAAGC
75489920 AGATCAAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
75489985 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
65 TCTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTA
75490050 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
130 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
*
75490111 AGATCAAAGATGGCAGATTTTACCTCCCTGACTATAGTGGAGTACATTGAAG-CGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75490175 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
66 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
*
75490240 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTACATTTGGCAGTGGAATAGATTGA
131 AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
75490300 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
* *
75490365 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCC--CTGACT
*
75490430 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGA
129 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
75490492 AGAT
1 AGAT
75490496 TGCAGATCTT
Statistics
Matches: 375, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
189 187 0.50
190 114 0.30
191 5 0.01
192 69 0.18
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (190 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCCTGACTAC
AGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGCATTTGGCAGTGGAATAGATTGA
Found at i:75490551 original size:231 final size:231
Alignment explanation
Indices: 75490300--75490861 Score: 1052
Period size: 231 Copynumber: 2.4 Consensus size: 231
75490290 AATAGATTGA
75490300 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75490365 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
*
75490430 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
*
75490495 TTGCAGATCTTGCATTCCTGTATTTGGCAGCGAAGC
196 TTGCAGATCTTGCATTCCTGTATTTGACAGCGAAGC
*
75490531 AGATCAAAGATGGTAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
75490596 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
75490661 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
131 ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
*
75490726 TTGCAGATCTTGCCTTCCTGTATTTGACAGCGAAGC
196 TTGCAGATCTTGCATTCCTGTATTTGACAGCGAAGC
* * *
75490762 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
75490827 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGAT
75490862 TGCAGATCTG
Statistics
Matches: 322, Mismatches: 8, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
231 232 0.72
232 90 0.28
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (231 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACT
ACAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGA
TTGCAGATCTTGCATTCCTGTATTTGACAGCGAAGC
Found at i:75490616 original size:45 final size:45
Alignment explanation
Indices: 75490565--75490724 Score: 117
Period size: 45 Copynumber: 3.4 Consensus size: 45
75490555 TCCCTGACTA
*
75490565 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
* * * * * * * *
75490610 CAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGA-CT-A
1 CAGTGGAATACATTGAAG--C--CGAT---A-ACTCTATCTCCCTGT-ATTTGG
* *
75490662 CAGTGGAGTACATTGAAGCCGATAACTCTATCTCCCAGTATTTGG
1 CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
*
75490707 CAGTGGAATAGATTGAAG
1 CAGTGGAATACATTGAAG
75490725 ATTGCAGATC
Statistics
Matches: 83, Mismatches: 21, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
43 1 0.01
44 11 0.13
45 33 0.40
47 1 0.01
48 3 0.04
49 3 0.04
50 1 0.01
52 17 0.20
53 12 0.14
54 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (45 bp):
CAGTGGAATACATTGAAGCCGATAACTCTATCTCCCTGTATTTGG
Found at i:75490629 original size:88 final size:89
Alignment explanation
Indices: 75490511--75490733 Score: 279
Period size: 97 Copynumber: 2.4 Consensus size: 89
75490501 ATCTTGCATT
* * ** *
75490511 CCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGTAGATTTTACCTCC-CTGACTACAGTGGAGT
1 CCTGTATTTGGCAGTGGAA-TAGATTGAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGT
75490574 ACATTGAAGCCGATAACTCTATCTC
65 ACATTGAAGCCGATAACTCTATCTC
*
75490599 CCTGTATTTGGCAGTGGAATAGATTGAAGATCAAAGATGGCAGATTTTACCTCCATGTGACTACA
1 CCTGTATTTGGCAGTGGAATAGATT---G----AAGATGGCAGATTTTACCTCCA-CTGACTACA
75490664 GTGGAGTACATTGAAGCCGATAACTCTATCTC
58 GTGGAGTACATTGAAGCCGATAACTCTATCTC
* *
75490696 CCAGTATTTGGCAGTGGAATAGATTGAAGATTGCAGAT
1 CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGAT
75490734 CTTGCCTTCC
Statistics
Matches: 117, Mismatches: 8, Indels: 18
0.82 0.06 0.13
Matches are distributed among these distances:
88 18 0.15
89 3 0.03
90 11 0.09
94 1 0.01
95 20 0.17
97 64 0.55
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (89 bp):
CCTGTATTTGGCAGTGGAATAGATTGAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTA
CATTGAAGCCGATAACTCTATCTC
Found at i:75490645 original size:95 final size:96
Alignment explanation
Indices: 75490531--75490726 Score: 349
Period size: 97 Copynumber: 2.0 Consensus size: 96
75490521 GCAGCGAAGC
*
75490531 AGATCAAAGATGGTAGATTTTACCTCC-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
*
75490595 TCTCCCTGTATTTGGCAGTGGAATAGATTGA
66 TCTCCCAGTATTTGGCAGTGGAATAGATTGA
*
75490626 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCCA-CTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
75490691 ATCTCCCAGTATTTGGCAGTGGAATAGATTGA
65 ATCTCCCAGTATTTGGCAGTGGAATAGATTGA
75490723 AGAT
1 AGAT
75490727 TGCAGATCTT
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
95 26 0.27
97 70 0.73
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (96 bp):
AGATCAAAGATGGCAGATTTTACCTCCACTGACTACAGTGGAGTACATTGAAGCCGATAACTCTA
TCTCCCAGTATTTGGCAGTGGAATAGATTGA
Found at i:75490972 original size:134 final size:134
Alignment explanation
Indices: 75490626--75491233 Score: 1011
Period size: 134 Copynumber: 4.5 Consensus size: 134
75490616 AATAGATTGA
* *
75490626 AGATCAAAGATGGCAGATTTTACCTCCATGTGACTACAGTGGAGTACATTGAAGCCGATAACTCT
1 AGATCAAAGATGGCAGATTTTACCTCC--CTGACCACAGTGGAGTACATTGAAGCCGATAACTCT
* *
75490691 ATCTCCCAGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGACAG
64 ATCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAG
75490756 CGAAGC
129 CGAAGC
* *
75490762 AGATCAAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACACTGAAGCCGATAATTCTA
1 AGATC-AAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTA
*
75490827 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTGGCCTTCCTGTATTTGGCAGC
65 TCTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGC
75490892 GAAGC
130 GAAGC
75490897 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75490962 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
75491027 AAGC
131 AAGC
75491031 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
*
75491096 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCA
66 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
75491161 AAGC
131 AAGC
* ** * ** * * **
75491165 AGGTTGAAGATGGCGGATTTTACCTCCCTGATTATAGTGG-GTACATTGAAGCTGATAGTTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
75491229 CTCCC
66 CTCCC
75491234 GGGGCAAGAA
Statistics
Matches: 448, Mismatches: 23, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
133 26 0.06
134 290 0.65
135 105 0.23
136 5 0.01
137 22 0.05
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (134 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAACTCTAT
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCG
AAGC
Found at i:75491023 original size:46 final size:46
Alignment explanation
Indices: 75490828--75491158 Score: 149
Period size: 46 Copynumber: 7.4 Consensus size: 46
75490818 ATAATTCTAT
* **
75490828 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTGGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
* * * * * *
75490874 CTTCCTGTATTTGGCAG-CGAAGCAGA-TCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAA-ATTGCAGATCTTAC
*** * * * *
75490920 CTCCCTG-A--CCACAGTGGAGTACATTG--AA--GCCGATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGAT--CT-TAC
*
75490962 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
* * * * * *
75491008 CTTCCTGTATTTGGCAG-CGAAGCAGA-TCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAA-ATTGCAGATCTTAC
*** * * * *
75491054 CTCCCTG-A--CCACAGTGGAGTACATTG--AA--GCCGATAACTCTAT
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGAT--CT-TAC
* *
75491096 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
*
75491142 CTTCCTGTATTTGGCAG
1 CTCCCTGTATTTGGCAG
75491159 CAAAGCAGGT
Statistics
Matches: 199, Mismatches: 58, Indels: 56
0.64 0.19 0.18
Matches are distributed among these distances:
39 10 0.05
41 4 0.02
42 20 0.10
43 12 0.06
44 6 0.03
45 41 0.21
46 89 0.45
47 7 0.04
49 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAAATTGCAGATCTTAC
Found at i:75491478 original size:132 final size:132
Alignment explanation
Indices: 75491241--75492017 Score: 1392
Period size: 132 Copynumber: 5.9 Consensus size: 132
75491231 CCCGGGGCAA
* *
75491241 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATAGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
75491306 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75491371 GT
131 GT
*
75491373 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
75491438 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75491503 GT
131 GT
*
75491505 GAAGTAGATCGAAGATAGCTGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
* *
75491570 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75491635 GT
131 GT
* *
75491637 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
*
75491702 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75491767 GT
131 GT
* *
75491769 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
*
75491834 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
75491899 GT
131 GT
* * * *
75491901 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCGACGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
* *
75491966 TCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTC
66 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTC
75492018 CCTGTATTTG
Statistics
Matches: 631, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 631 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAATGGATCGAAGATGCAGA
TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
GT
Found at i:75497215 original size:13 final size:13
Alignment explanation
Indices: 75497197--75497221 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75497187 CCTTCTTTTA
75497197 TTTTTAATTAATG
1 TTTTTAATTAATG
75497210 TTTTTAATTAAT
1 TTTTTAATTAAT
75497222 AAATATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
TTTTTAATTAATG
Found at i:75497537 original size:20 final size:22
Alignment explanation
Indices: 75497498--75497537 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
75497488 TGCTAATACA
*
75497498 TTAAAAACATTAATTAAAAATT
1 TTAAAAACATTAACTAAAAATT
75497520 TTAAAAA-A-TAACTAAAAA
1 TTAAAAACATTAACTAAAAA
75497538 AATATAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 1 0.06
22 7 0.41
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
TTAAAAACATTAACTAAAAATT
Found at i:75497995 original size:21 final size:21
Alignment explanation
Indices: 75497958--75497998 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
75497948 TAAGATAACA
*
75497958 ATAATAATATTTATAAAATAG
1 ATAATAATATATATAAAATAG
75497979 ATAA-AATATATAGTAAAATA
1 ATAATAATATATA-TAAAATA
75497999 TTGGTGCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (21 bp):
ATAATAATATATATAAAATAG
Found at i:75500034 original size:25 final size:26
Alignment explanation
Indices: 75500005--75500055 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
75499995 AAAAGTAGAA
75500005 AAGGAATTATTTAGG-TTTTTTTTAC
1 AAGGAATTATTTAGGCTTTTTTTTAC
75500030 AAGGAATTATTTAGGCTTTTTTTTAC
1 AAGGAATTATTTAGGCTTTTTTTTAC
75500056 TTAAATAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.51
Consensus pattern (26 bp):
AAGGAATTATTTAGGCTTTTTTTTAC
Found at i:75501233 original size:26 final size:26
Alignment explanation
Indices: 75501197--75501251 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
75501187 CCTTTGCACG
75501197 AGATTAATTACTTTTGGGTTAGATAT
1 AGATTAATTACTTTTGGGTTAGATAT
75501223 AGATTAATTACTTTTGGGTTAGATAT
1 AGATTAATTACTTTTGGGTTAGATAT
75501249 AGA
1 AGA
75501252 GTAAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.44
Consensus pattern (26 bp):
AGATTAATTACTTTTGGGTTAGATAT
Found at i:75504640 original size:28 final size:30
Alignment explanation
Indices: 75504598--75504655 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
75504588 GAATTGGATC
75504598 AAATCAAAATTTTATGTAT-GAATTACACA
1 AAATCAAAATTTTATGTATAGAATTACACA
* *
75504627 AAATTAAAA-TTTATGTATATAATTACACA
1 AAATCAAAATTTTATGTATAGAATTACACA
75504656 TTCATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 9 0.35
29 17 0.65
ACGTcount: A:0.50, C:0.09, G:0.05, T:0.36
Consensus pattern (30 bp):
AAATCAAAATTTTATGTATAGAATTACACA
Found at i:75505334 original size:18 final size:17
Alignment explanation
Indices: 75505313--75505346 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
75505303 AAAGATTAAA
75505313 ATATA-TTTTAATTTTT
1 ATATATTTTTAATTTTT
*
75505329 ATATATTTTTTATTTTT
1 ATATATTTTTAATTTTT
75505346 A
1 A
75505347 AAATTTAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
ATATATTTTTAATTTTT
Found at i:75505741 original size:37 final size:37
Alignment explanation
Indices: 75505652--75505749 Score: 106
Period size: 37 Copynumber: 2.6 Consensus size: 37
75505642 GATATCGAAG
*
75505652 GTCGCAATTTTAAATCAAGCGAACCATAAAAATAACA
1 GTCGCAATATTAAATCAAGCGAACCATAAAAATAACA
** ** * * *
75505689 GTCGTGATACCAAATCAAGCGAATCATAAAAATGATA
1 GTCGCAATATTAAATCAAGCGAACCATAAAAATAACA
* *
75505726 GTCGCAATGTTAAATCAAGTGAAC
1 GTCGCAATATTAAATCAAGCGAAC
75505750 TGGTGAAATA
Statistics
Matches: 46, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.45, C:0.17, G:0.15, T:0.22
Consensus pattern (37 bp):
GTCGCAATATTAAATCAAGCGAACCATAAAAATAACA
Found at i:75505786 original size:25 final size:25
Alignment explanation
Indices: 75505756--75505805 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
75505746 GAACTGGTGA
75505756 AATATTGAAGATCGCGATCTTAAAT
1 AATATTGAAGATCGCGATCTTAAAT
75505781 AATATTGAAGATCGCGATCTTAAAT
1 AATATTGAAGATCGCGATCTTAAAT
75505806 CAAGTGAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (25 bp):
AATATTGAAGATCGCGATCTTAAAT
Found at i:75507241 original size:17 final size:17
Alignment explanation
Indices: 75507193--75507243 Score: 50
Period size: 17 Copynumber: 3.0 Consensus size: 17
75507183 GAAATATTTA
*
75507193 TTTTAATATTTTTATTAT
1 TTTTAATTTTTTTA-TAT
* * *
75507211 TTTTGA-TGTATTATAT
1 TTTTAATTTTTTTATAT
75507227 TTTTAATTTTTTTATAT
1 TTTTAATTTTTTTATAT
75507244 AAAAAAACAA
Statistics
Matches: 25, Mismatches: 7, Indels: 3
0.71 0.20 0.09
Matches are distributed among these distances:
16 8 0.32
17 12 0.48
18 5 0.20
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.71
Consensus pattern (17 bp):
TTTTAATTTTTTTATAT
Found at i:75511400 original size:21 final size:21
Alignment explanation
Indices: 75511374--75511414 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
75511364 AGACGAGCAA
* *
75511374 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
75511395 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
75511415 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:75515198 original size:2 final size:2
Alignment explanation
Indices: 75515191--75515218 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
75515181 CACTCGACAG
75515191 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
75515219 TATATAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:75522909 original size:21 final size:21
Alignment explanation
Indices: 75522883--75522938 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
75522873 AACAGCGGTG
*
75522883 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGATACTGTA
75522904 GCGGTGAGATTAGATACTGTA
1 GCGGTGAGATTAGATACTGTA
*
75522925 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
75522939 AACAGCGGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.29, C:0.09, G:0.34, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTGTA
Found at i:75525936 original size:6 final size:6
Alignment explanation
Indices: 75525925--75525968 Score: 70
Period size: 6 Copynumber: 7.2 Consensus size: 6
75525915 TTTGCAACCC
*
75525925 AAGGGG AAGGGG AAAGGG AAGGGG AAGGGG AAGGGG AAAGGGG A
1 AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG AAGGGG -AAGGGG A
75525969 GAAGAAGGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 29 0.83
7 6 0.17
ACGTcount: A:0.39, C:0.00, G:0.61, T:0.00
Consensus pattern (6 bp):
AAGGGG
Found at i:75529979 original size:2 final size:2
Alignment explanation
Indices: 75529957--75530039 Score: 121
Period size: 2 Copynumber: 41.5 Consensus size: 2
75529947 GGGATGTATT
* * *
75529957 TG TG TG TT TG CG TG TG AG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
* *
75529999 TG TG TG TG TG TG TG TG TA TG TG TG TG TG TG TA TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
75530040 AACAACCTAA
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.04, C:0.01, G:0.46, T:0.49
Consensus pattern (2 bp):
TG
Found at i:75532185 original size:20 final size:18
Alignment explanation
Indices: 75532160--75532196 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
75532150 ATTGCTAAGT
75532160 TGTAAAATAAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
75532180 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
75532197 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:75532804 original size:46 final size:46
Alignment explanation
Indices: 75532754--75532927 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 46
75532744 GTTGAGCATC
*
75532754 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
* * * *
75532800 CGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCAT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G-AT
* * **
75532846 CTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCC
1 C-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
* * *
75532893 CGAGCTCGTTGAGTTGAGTTCGAGTTCATTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75532928 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.58
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.30, T:0.32
Consensus pattern (46 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGAT
Found at i:75532908 original size:93 final size:93
Alignment explanation
Indices: 75532749--75532919 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
75532739 GGATGGTTGA
* **
75532749 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75532814 TGAG-TCTGAGTTCGTGAGATGTAACTAG
66 TGAGTTC-GAGTTCGTGAGATGTAACTAG
* * *
75532842 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
75532907 TGAGTTCGAGTTC
66 TGAGTTCGAGTTC
75532920 ATTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
93 69 0.97
94 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTTCGAGTTCGTGAGATGTAACTAG
Found at i:75535554 original size:46 final size:45
Alignment explanation
Indices: 75535503--75535667 Score: 181
Period size: 46 Copynumber: 3.6 Consensus size: 45
75535493 CGAGGGCTAG
*
75535503 TGTAAGACATGTCTGGGACATGCATCAGCCACAGTATGAGAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAG-ATGAGAGCCAA
* * **
75535549 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCAC-AGATGAGAGCCAA
* * * * * *
75535595 TGTCAGACATGTCTGGGACATGCGTCGGCTAC-GA-GATGTGCTAA
1 TGTAAGACATGTCTGGGACATGCATCAGCCACAGATGA-GAGCCAA
*
75535639 TGTAAGACATGTCTGGGACATGCGTCAGC
1 TGTAAGACATGTCTGGGACATGCATCAGC
75535668 ACGGTTACAT
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.01
44 33 0.32
46 66 0.65
47 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCACAGATGAGAGCCAA
Found at i:75538501 original size:20 final size:18
Alignment explanation
Indices: 75538476--75538512 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
75538466 ATTGCTAAGT
75538476 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
75538496 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
75538513 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:75539125 original size:46 final size:46
Alignment explanation
Indices: 75539068--75539243 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 46
75539058 TGGTTGAGCA
*
75539068 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
75539114 TTCGAAG-TCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCG-AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75539159 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
75539207 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75539244 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 13, Indels: 22
0.75 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.58
47 25 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75539224 original size:93 final size:93
Alignment explanation
Indices: 75539065--75539235 Score: 281
Period size: 93 Copynumber: 1.8 Consensus size: 93
75539055 GGATGGTTGA
* **
75539065 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAAGTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAAGTCGTTGAGT
*
75539130 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75539158 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCG-AGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAAG-TCGTTGAG
75539222 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
75539236 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAAGTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75541127 original size:35 final size:35
Alignment explanation
Indices: 75541076--75541208 Score: 135
Period size: 35 Copynumber: 3.8 Consensus size: 35
75541066 GGGTGTTACA
**
75541076 TATGGTATTATCCATACTGAGTTATGGCACGTAGG
1 TATGGTATTATCCATACTGAGTTATGAAACGTAGG
* * * *
75541111 TATGGTATTATTCATACGGAGCTAT-AATACTTAGG
1 TATGGTATTATCCATACTGAGTTATGAA-ACGTAGG
* *
75541146 TATGGTATT-TCCCATACCGAGTTGTGAAACGTAGG
1 TATGGTATTAT-CCATACTGAGTTATGAAACGTAGG
** *
75541181 TATGGTATTAAACATACTGAGTTGTGAA
1 TATGGTATTATCCATACTGAGTTATGAA
75541209 TCGTGGCACT
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
34 1 0.01
35 77 0.96
36 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (35 bp):
TATGGTATTATCCATACTGAGTTATGAAACGTAGG
Found at i:75542127 original size:13 final size:13
Alignment explanation
Indices: 75542109--75542144 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
75542099 AGCACAGAGG
75542109 CGTGTGACTTGGC
1 CGTGTGACTTGGC
75542122 CGTGTGACTTGGC
1 CGTGTGACTTGGC
*
75542135 CGTGTAACTT
1 CGTGTGACTT
75542145 CAATTTATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.22, G:0.33, T:0.33
Consensus pattern (13 bp):
CGTGTGACTTGGC
Found at i:75551813 original size:16 final size:16
Alignment explanation
Indices: 75551792--75551843 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
75551782 TGGTTAAGTC
*
75551792 TAATGGAATAGGGTTG
1 TAATGGAATAGAGTTG
**
75551808 TAATGGAATAGAACTG
1 TAATGGAATAGAGTTG
75551824 TAATGGAATAGAGTTG
1 TAATGGAATAGAGTTG
75551840 TAAT
1 TAAT
75551844 AGAAGAGAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.38, C:0.02, G:0.29, T:0.31
Consensus pattern (16 bp):
TAATGGAATAGAGTTG
Found at i:75551833 original size:32 final size:32
Alignment explanation
Indices: 75551792--75551859 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
75551782 TGGTTAAGTC
* * *
75551792 TAATGGAATAGGGTTGTAATGGAATAGAACTG
1 TAATGGAATAGAGTTGTAATAGAAGAGAACTG
75551824 TAATGGAATAGAGTTGTAATAGAAGAGAACTG
1 TAATGGAATAGAGTTGTAATAGAAGAGAACTG
75551856 TAAT
1 TAAT
75551860 AGTAATTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.41, C:0.03, G:0.28, T:0.28
Consensus pattern (32 bp):
TAATGGAATAGAGTTGTAATAGAAGAGAACTG
Found at i:75551857 original size:16 final size:16
Alignment explanation
Indices: 75551806--75551861 Score: 67
Period size: 16 Copynumber: 3.5 Consensus size: 16
75551796 GGAATAGGGT
*
75551806 TGTAATGGAATAGAAC
1 TGTAATAGAATAGAAC
* **
75551822 TGTAATGGAATAGAGT
1 TGTAATAGAATAGAAC
*
75551838 TGTAATAGAAGAGAAC
1 TGTAATAGAATAGAAC
75551854 TGTAATAG
1 TGTAATAG
75551862 TAATTCAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.43, C:0.04, G:0.27, T:0.27
Consensus pattern (16 bp):
TGTAATAGAATAGAAC
Found at i:75552096 original size:61 final size:60
Alignment explanation
Indices: 75552031--75552183 Score: 150
Period size: 58 Copynumber: 2.5 Consensus size: 60
75552021 TTTAATAGGA
** *
75552031 TTATTATTAGATATAATTTAATAAAAATAATAATACATAATTTAACCCTATT-TTAATAAAT
1 TTATTATTA-ATATAA-TTAATAAAAATAATAATACATAATTTAACAATATTCTTAATAAAG
* * * *
75552092 TTATTATTAATTATAATT--TAACAATAATAATATATAATTTAATAATATTCTTAATATAG
1 TTATTATTAA-TATAATTAATAAAAATAATAATACATAATTTAACAATATTCTTAATAAAG
**
75552151 CAATTATTAAAATATAAATTAATAAAAATAATA
1 TTATTATT--AATAT-AATTAATAAAAATAATA
75552184 TATAATATTA
Statistics
Matches: 75, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
58 26 0.35
59 13 0.17
60 6 0.08
61 20 0.27
63 10 0.13
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (60 bp):
TTATTATTAATATAATTAATAAAAATAATAATACATAATTTAACAATATTCTTAATAAAG
Found at i:75552127 original size:21 final size:20
Alignment explanation
Indices: 75552099--75552138 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
75552089 AATTTATTAT
75552099 TAATTATAATTTAACAATAA
1 TAATTATAATTTAACAATAA
*
75552119 TAATATATAATTTAATAATA
1 TAAT-TATAATTTAACAATA
75552139 TTCTTAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (20 bp):
TAATTATAATTTAACAATAA
Found at i:75552199 original size:22 final size:21
Alignment explanation
Indices: 75552162--75552207 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 21
75552152 AATTATTAAA
75552162 ATATAAATTAATAAAAATAAT
1 ATATAAATTAATAAAAATAAT
75552183 ATATAATATTACA-AAAAATAAT
1 ATATAA-ATTA-ATAAAAATAAT
75552205 ATA
1 ATA
75552208 CAACCTACTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 6 0.26
22 16 0.70
23 1 0.04
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (21 bp):
ATATAAATTAATAAAAATAAT
Done.