Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 242 of 259
Found at i:75906617 original size:29 final size:28
Alignment explanation
Indices: 75906555--75906623 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
75906545 ATAAATATTA
* *
75906555 AAATTATACATAAATTTTAATTTAATGT
1 AAATTATATATAAATTTTAACTTAATGT
*
75906583 ATAATTATATATATGAATTTTAACTTAGTG-
1 A-AATTATATATA--AATTTTAACTTAATGT
75906613 AAATTATATAT
1 AAATTATATAT
75906624 GTAAAATTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
28 1 0.03
29 20 0.57
30 1 0.03
31 13 0.37
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.46
Consensus pattern (28 bp):
AAATTATATATAAATTTTAACTTAATGT
Found at i:75912468 original size:24 final size:24
Alignment explanation
Indices: 75912441--75912488 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
75912431 TCCCTCCTAG
75912441 AGGTGTTATGATAAATTTATATAT
1 AGGTGTTATGATAAATTTATATAT
*
75912465 AGGTGTTATGATGAATTTATATAT
1 AGGTGTTATGATAAATTTATATAT
75912489 GGGGATAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (24 bp):
AGGTGTTATGATAAATTTATATAT
Found at i:75917675 original size:17 final size:16
Alignment explanation
Indices: 75917651--75917685 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
75917641 ATTTTTCTTA
*
75917651 AATTTATTGAAAATAT
1 AATTTATTAAAAATAT
75917667 AATTATATTAAAAATAT
1 AATT-TATTAAAAATAT
75917684 AA
1 AA
75917686 AAAATTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
AATTTATTAAAAATAT
Found at i:75922160 original size:13 final size:12
Alignment explanation
Indices: 75922142--75922171 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
75922132 GTGTTTAATG
75922142 ATTTTTATTATGA
1 ATTTTTA-TATGA
75922155 ATTTTTATATGA
1 ATTTTTATATGA
75922167 ATTTT
1 ATTTT
75922172 CTGGTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
ATTTTTATATGA
Found at i:75923186 original size:31 final size:31
Alignment explanation
Indices: 75923151--75923278 Score: 84
Period size: 31 Copynumber: 4.2 Consensus size: 31
75923141 CATTAGAGAT
*
75923151 TTAAAACTTGGGTAATTAAAATGAAAATACC
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
* * * *
75923182 TTAAAAATTGAGTGACCAAATTATGAAAAT---
1 TTAAAACTTGGGTAACTAAA--ATGAAAATACC
* ** * * * *
75923212 TT-TATTTTGGGTGACTAAAAGGAAAACACT
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
* *
75923242 TTAAAACTTGGGTAATTAAAATGAAAATATC
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
75923273 TTAAAA
1 TTAAAA
75923279 ATTGAGTGAC
Statistics
Matches: 70, Mismatches: 21, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
27 6 0.09
29 12 0.17
30 4 0.06
31 40 0.57
33 8 0.11
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (31 bp):
TTAAAACTTGGGTAACTAAAATGAAAATACC
Found at i:75923305 original size:91 final size:92
Alignment explanation
Indices: 75923150--75923339 Score: 337
Period size: 91 Copynumber: 2.1 Consensus size: 92
75923140 TCATTAGAGA
*
75923150 TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATGAAAATTTT
1 TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATAAAAATTTT
* *
75923215 ATTTTGGGTGACT-AAAAGGAAAACAC
66 ATTTTGGATGACTAAAAAGAAAAACAC
*
75923241 TTTAAAACTTGGGTAATTAAAATGAAAATATCTTAAAAATTGAGTGACCAAATTATAAAAATTTT
1 TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATAAAAATTTT
75923306 ATTTTGGATGACTAAAAAGAAAAACAC
66 ATTTTGGATGACTAAAAAGAAAAACAC
75923333 TTTAAAA
1 TTTAAAA
75923340 TTTAAGTGAC
Statistics
Matches: 94, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 75 0.80
92 19 0.20
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (92 bp):
TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATAAAAATTTT
ATTTTGGATGACTAAAAAGAAAAACAC
Found at i:75933114 original size:221 final size:220
Alignment explanation
Indices: 75932649--75933220 Score: 550
Period size: 222 Copynumber: 2.6 Consensus size: 220
75932639 AGAAGATGAG
* * * * * * * *
75932649 TTAATAGCTTTCCCTCAAGATTTGCAGAGGGGAGGTATTTGGTGGAATCTTAAAAGTCTGAAAGT
1 TTAATGGCATTCCCTCAAGATTTGCAGAGGGGAGGTGTTT-ATGCAATCTCAAAAGTCTCAAAAT
* * *
75932714 GCCTAACATAAGCACATTTATCCAA-TTCTAAGAATGGTTTCTTATGCAAACTAGTTTTCCAAGT
65 GCCTAACATAAGCACATTTATCCAAGTTCTAAGAATGGTTTCTCAGGCAAACTAGTTTTCCAAGA
* * *
75932778 GAACTGTTTTCATGTCATGTTTGAGCCATGTTCTCAGATTTTTCATTTCCATACGTGTTTATTCA
130 GAACTATTTTC---TCACGTTTGAGCCATGTTCTCAGATTTTTCATTTCCATACGTGTTCATTCA
*
75932843 GACACAAGAATCGATATAATTCTCCAATT
192 GACACAAGAATCGATATAATTCTCCAAAT
* * *
75932872 TTACTGGCATTTCCACAAGATTTGCAGAGGGGAGGTGTTTATGCAATCTCAAAAG-CTCAAAATG
1 TTAATGGCATTCCCTCAAGATTTGCAGAGGGGAGGTGTTTATGCAATCTCAAAAGTCTCAAAATG
*
75932936 CCTAACATAA-CACATTTATCCAAGTTGTAAGAATGGTTTCTCAGGCAAACTTA-TCTAGGTGTA
66 CCTAACATAAGCACATTTATCCAAGTTCTAAGAATGGTTTCTCAGGCAAAC-TAGT-T---T-T-
75932999 CTC-AGAGAA-TATTTTC-CACGTTATGAAGCCTATGTTACTC-GA-TTTTCATTT-CATAC-TG
124 C-CAAGAGAACTATTTTCTCACGTT-TG-AGCC-ATGTT-CTCAGATTTTTCATTTCCATACGTG
*
75933057 TGTCA-TCAGACA-TA-AATACAGATATAATTCTCCAAAT
184 T-TCATTCAGACACAAGAAT-C-GATATAATTCTCCAAAT
* * *
75933094 TTAATGGCA-TCCCTCAAGATTTTCAGA-GGGAGCTGTTAGATGC-ATCTTC-AAAGTCTCAAAA
1 TTAATGGCATTCCCTCAAGATTTGCAGAGGGGAGGTGTT-TATGCAATC-TCAAAAGTCTCAAAA
* ** * ** *
75933155 TGCCTAACACAAGGTCATTTATCCAAGTTCTAAGAATGGTTTCCTTACACAAACTAGTTATCCAA
64 TGCCTAACATAAGCACATTTATCCAAGTTCTAAGAATGGTTT-CTCAGGCAAACTAGTTTTCCAA
75933220 G
128 G
75933221 TGTATTTCAG
Statistics
Matches: 292, Mismatches: 34, Indels: 52
0.77 0.09 0.14
Matches are distributed among these distances:
216 1 0.00
217 3 0.01
218 1 0.00
220 32 0.11
221 82 0.28
222 83 0.28
223 52 0.18
224 13 0.04
225 8 0.03
226 10 0.03
227 6 0.02
228 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (220 bp):
TTAATGGCATTCCCTCAAGATTTGCAGAGGGGAGGTGTTTATGCAATCTCAAAAGTCTCAAAATG
CCTAACATAAGCACATTTATCCAAGTTCTAAGAATGGTTTCTCAGGCAAACTAGTTTTCCAAGAG
AACTATTTTCTCACGTTTGAGCCATGTTCTCAGATTTTTCATTTCCATACGTGTTCATTCAGACA
CAAGAATCGATATAATTCTCCAAAT
Found at i:75936906 original size:28 final size:25
Alignment explanation
Indices: 75936857--75936913 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 25
75936847 TTTAAAAAAA
75936857 AAGAAAAAAGATATGTTAATCTG-G
1 AAGAAAAAAGATATGTTAATCTGTG
75936881 AAGAAAAAAGATGATTTGGTTAATCTGTG
1 AAGAAAAAAGAT-A--T-GTTAATCTGTG
75936910 AAGA
1 AAGA
75936914 CTCAAATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
24 12 0.43
25 1 0.04
27 1 0.04
28 9 0.32
29 5 0.18
ACGTcount: A:0.47, C:0.04, G:0.23, T:0.26
Consensus pattern (25 bp):
AAGAAAAAAGATATGTTAATCTGTG
Found at i:75954444 original size:13 final size:13
Alignment explanation
Indices: 75954423--75954484 Score: 55
Period size: 13 Copynumber: 5.2 Consensus size: 13
75954413 ATCAAATATC
75954423 ATTTAATATATGA
1 ATTTAATATATGA
*
75954436 ATTT--TATAT-C
1 ATTTAATATATGA
75954446 ATTTAATATATGA
1 ATTTAATATATGA
*
75954459 ATTT--TATAT-C
1 ATTTAATATATGA
*
75954469 ATTTAATATATAA
1 ATTTAATATATGA
75954482 ATT
1 ATT
75954485 ATTTATTAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 12
0.71 0.07 0.22
Matches are distributed among these distances:
10 8 0.21
11 10 0.26
12 10 0.26
13 11 0.28
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.52
Consensus pattern (13 bp):
ATTTAATATATGA
Found at i:75954490 original size:25 final size:23
Alignment explanation
Indices: 75954418--75954484 Score: 125
Period size: 23 Copynumber: 2.9 Consensus size: 23
75954408 AATTGATCAA
75954418 ATATCATTTAATATATGAATTTT
1 ATATCATTTAATATATGAATTTT
75954441 ATATCATTTAATATATGAATTTT
1 ATATCATTTAATATATGAATTTT
*
75954464 ATATCATTTAATATATAAATT
1 ATATCATTTAATATATGAATT
75954485 ATTTATTAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (23 bp):
ATATCATTTAATATATGAATTTT
Found at i:75954885 original size:15 final size:17
Alignment explanation
Indices: 75954861--75954893 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
75954851 TTAATGTATT
75954861 AAAAATATAATGA-AAG
1 AAAAATATAATGATAAG
75954877 AAAAA-ATAATGATAAG
1 AAAAATATAATGATAAG
75954893 A
1 A
75954894 CCATCTCAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.70, C:0.00, G:0.12, T:0.18
Consensus pattern (17 bp):
AAAAATATAATGATAAG
Found at i:75960418 original size:37 final size:37
Alignment explanation
Indices: 75960368--75960443 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
75960358 AATAGGACCA
75960368 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
1 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
*
75960405 AAATATTATAAATAGATAATGTTATTGATTATTTTAT
1 AAATATTATAAATAGATAATGTTATTAATTATTTTAT
75960442 AA
1 AA
75960444 TAAAAAATTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.47
Consensus pattern (37 bp):
AAATATTATAAATAGATAATGTTATTAATTATTTTAT
Found at i:75961085 original size:3 final size:3
Alignment explanation
Indices: 75961077--75961108 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
75961067 TTCCTTTTTG
75961077 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
75961109 GAGTTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:75961691 original size:13 final size:13
Alignment explanation
Indices: 75961673--75961697 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75961663 ATTCAATACT
75961673 TAATATAAATTTC
1 TAATATAAATTTC
75961686 TAATATAAATTT
1 TAATATAAATTT
75961698 AGTACTTAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATATAAATTTC
Found at i:75963612 original size:191 final size:191
Alignment explanation
Indices: 75963286--75963669 Score: 705
Period size: 191 Copynumber: 2.0 Consensus size: 191
75963276 CATTAGAAAA
* *
75963286 AAACTCATCAAAATGATGTTTAATTGATAAGAAAGCTTACAACTACTTTTTCTTGTTTGTATTAT
1 AAACTCATCAAAACGATGTTTAATTAATAAGAAAGCTTACAACTACTTTTTCTTGTTTGTATTAT
*
75963351 AAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAGG
66 AAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAAG
* *
75963416 TGTCATATACCTACATAAAGCATCTTCTCACATTTCTACACAAGTTACAGCTCAATATAAC
131 TGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
*
75963477 AAACTCATCACAACGATGTTTAATTAATAAGAAAGCTTACAACTACTTTTTCTTGTTTGTATTAT
1 AAACTCATCAAAACGATGTTTAATTAATAAGAAAGCTTACAACTACTTTTTCTTGTTTGTATTAT
*
75963542 AAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCTCTTAAAAAG
66 AAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAAG
75963607 TGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
131 TGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
75963668 AA
1 AA
75963670 TTTAAAAAAA
Statistics
Matches: 186, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
191 186 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.37
Consensus pattern (191 bp):
AAACTCATCAAAACGATGTTTAATTAATAAGAAAGCTTACAACTACTTTTTCTTGTTTGTATTAT
AAATTTCAGGGTAATGAATTTTTATATAGGATGGTTGAACCAGTTTTGTCCTTTCCCTTAAAAAG
TGTCATATACCTACATAAAGCATCTTCTCACATTTCTACAAAAGTTACAACTCAATATAAC
Found at i:75965824 original size:21 final size:21
Alignment explanation
Indices: 75965776--75965830 Score: 67
Period size: 21 Copynumber: 2.6 Consensus size: 21
75965766 AACAGTGGTG
75965776 GCGGTGAGATTAATTACTGTA
1 GCGGTGAGATTAATTACTGTA
***
75965797 ATAGTGAGATTAGA-TACTGTA
1 GCGGTGAGATTA-ATTACTGTA
75965818 GCGGTGAGATTAA
1 GCGGTGAGATTAA
75965831 AAACAATGGT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.31
Consensus pattern (21 bp):
GCGGTGAGATTAATTACTGTA
Found at i:75969741 original size:19 final size:19
Alignment explanation
Indices: 75969717--75969754 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
75969707 AAAAATGAGC
*
75969717 CTAATTTTTTGAGCCTATA
1 CTAATTTTTCGAGCCTATA
75969736 CTAATTTTTCGAGCCTATA
1 CTAATTTTTCGAGCCTATA
75969755 TTTTTATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (19 bp):
CTAATTTTTCGAGCCTATA
Found at i:75971508 original size:30 final size:30
Alignment explanation
Indices: 75971470--75971528 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
75971460 GTAAAAACTC
* *
75971470 AAAATTTGAGAGGCTAA-AGTGTAAATATG
1 AAAATTTGAAAGGCCAATAGTGTAAATATG
*
75971499 AAAATTTTGAAAGTCCAATAGTGTAAATAT
1 AAAA-TTTGAAAGGCCAATAGTGTAAATAT
75971529 TTTAAGAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 4 0.16
30 10 0.40
31 11 0.44
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.31
Consensus pattern (30 bp):
AAAATTTGAAAGGCCAATAGTGTAAATATG
Found at i:75971766 original size:20 final size:21
Alignment explanation
Indices: 75971732--75971785 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
75971722 TGATGATATT
*
75971732 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
75971753 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
75971773 TTTTATTATTTTA
1 TTATATTATTTTA
75971786 TTATTGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:75971799 original size:11 final size:11
Alignment explanation
Indices: 75971775--75971813 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
75971765 ATGAGATATT
75971775 TTATTATTTTA
1 TTATTATTTTA
* *
75971786 TTATTGTTTCA
1 TTATTATTTTA
75971797 TTATTATTTTA
1 TTATTATTTTA
75971808 TTATTA
1 TTATTA
75971814 ATTATTTAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:75974002 original size:46 final size:46
Alignment explanation
Indices: 75973950--75974177 Score: 307
Period size: 46 Copynumber: 5.0 Consensus size: 46
75973940 AGTGTGCTCT
*
75973950 CTGATATGAAATGTGTAAGACTATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
75973996 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
75974042 CTAATA-GAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** *
75974088 GTGATATGAAATGAACAAGACCATGGTTGAAAGATATCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
75974134 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
75974178 TCATGTCAAA
Statistics
Matches: 163, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
45 2 0.01
46 160 0.98
47 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:75979240 original size:25 final size:25
Alignment explanation
Indices: 75979187--75979245 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
75979177 CTTATTTCAT
* * *
75979187 TAAATAAA-AAATTTTAAAATATAA
1 TAAATAAATACATTTAAAAACATAA
75979211 TAAATCAAATACATTTAAAAACATAA
1 TAAAT-AAATACATTTAAAAACATAA
75979237 -AAATAAATA
1 TAAATAAATA
75979246 TTAAAACAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 10 0.33
25 7 0.23
26 13 0.43
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAATACATTTAAAAACATAA
Found at i:75983894 original size:13 final size:13
Alignment explanation
Indices: 75983878--75983938 Score: 77
Period size: 13 Copynumber: 4.7 Consensus size: 13
75983868 ACCAAATTTT
75983878 TCAAAAGCACTTC
1 TCAAAAGCACTTC
*
75983891 TCAAAAGCACTTT
1 TCAAAAGCACTTC
* * *
75983904 TCCACAGCGCTTC
1 TCAAAAGCACTTC
*
75983917 TCAAAAGCACTTT
1 TCAAAAGCACTTC
75983930 TCAAAAGCA
1 TCAAAAGCA
75983939 TTGCCAAACT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 39 1.00
ACGTcount: A:0.36, C:0.30, G:0.10, T:0.25
Consensus pattern (13 bp):
TCAAAAGCACTTC
Found at i:75985987 original size:21 final size:20
Alignment explanation
Indices: 75985952--75985990 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
75985942 GTTTTCCATT
75985952 TTTAAAAATAAAAAATATAC
1 TTTAAAAATAAAAAATATAC
*
75985972 TTTAAATAATATAAAATAT
1 TTTAAA-AATAAAAAATAT
75985991 GAAAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
TTTAAAAATAAAAAATATAC
Found at i:75990558 original size:25 final size:25
Alignment explanation
Indices: 75990499--75990549 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
75990489 AAATGCTAAG
75990499 TATGAATCTACTGTTCAGAACTCTT
1 TATGAATCTACTGTTCAGAACTCTT
75990524 TATGAATCTACTGTTCAGAACTCTT
1 TATGAATCTACTGTTCAGAACTCTT
75990549 T
1 T
75990550 TCTTTTCTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.27, C:0.20, G:0.12, T:0.41
Consensus pattern (25 bp):
TATGAATCTACTGTTCAGAACTCTT
Found at i:75995000 original size:16 final size:18
Alignment explanation
Indices: 75994984--75995024 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
75994974 TTTATGGTTT
75994984 AGGGTTA-GGTTTTTTTA
1 AGGGTTATGGTTTTTTTA
* *
75995001 AGGTTTATGGTTTTTGTA
1 AGGGTTATGGTTTTTTTA
75995019 AGGGTT
1 AGGGTT
75995025 TAATTAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.17, C:0.00, G:0.32, T:0.51
Consensus pattern (18 bp):
AGGGTTATGGTTTTTTTA
Found at i:75995055 original size:26 final size:26
Alignment explanation
Indices: 75995024--75995091 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
75995014 TTGTAAGGGT
*
75995024 TTAATTAATTAAATTAGGGTGTAAGA
1 TTAATTAATTAAATTAGGATGTAAGA
75995050 TTAATTAATTAAATTAGGATGTAAGA
1 TTAATTAATTAAATTAGGATGTAAGA
75995076 TTAATTAATTAAATTA
1 TTAATTAATTAAATTA
75995092 AATATTAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (26 bp):
TTAATTAATTAAATTAGGATGTAAGA
Found at i:75995375 original size:126 final size:125
Alignment explanation
Indices: 75995216--75995589 Score: 418
Period size: 125 Copynumber: 3.0 Consensus size: 125
75995206 AATTTTTGGT
* * * * * * * *
75995216 TTTTTTTTCT-TCAGTAGTATCT-AGAAAAAAATTTTAAGAAGAAGTTTTTGAAGAAATAGTATC
1 TTTTTTTTCTAT-AGTGGTATCTGAGAAAATAATTTTGAGATGACGTTTCTGAAAAAATAGTGTC
*
75995279 CAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAATGCTCC-A-ATGTAGACG
65 AAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAA-GCTCCTACATG--GACG
*
75995341 TTTTTTTTCTATAGTGGTATCTGAGAAAATAATTTTGAGATGACGTTTCT-AAAAAATAGTGTAA
1 TTTTTTTTCTATAGTGGTATCTGAGAAAATAATTTTGAGATGACGTTTCTGAAAAAATAGTGTCA
*
75995405 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTACTGAAAAAGCTCCTACATGGACG
66 AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAGCTCCTACATGGACG
* * ** * * * * * *
75995465 CTCTTTTGATACAGTGCTATCTGAAAAAAATAATTGTGAGATGACCTTTCTGAACAAATAGTGTC
1 TTTTTTTTCTATAGTGGTATCTG-AGAAAATAATTTTGAGATGACGTTTCTGAAAAAATAGTGTC
* * * * *
75995530 AAAAACGCTTCAAGCA-GATGCACTTTCAGCAAAATTATTGAGAAAAGCTCCCACGTGGAC
65 AAAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGA-AAAAGCTCCTACATGGAC
75995590 ACGCTCTTTT
Statistics
Matches: 214, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
124 26 0.12
125 120 0.56
126 68 0.32
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.30
Consensus pattern (125 bp):
TTTTTTTTCTATAGTGGTATCTGAGAAAATAATTTTGAGATGACGTTTCTGAAAAAATAGTGTCA
AAAACGCTTTAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAGCTCCTACATGGACG
Found at i:75998722 original size:29 final size:29
Alignment explanation
Indices: 75998690--75998778 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 29
75998680 AAAACATCAT
75998690 TTATTTTATTACAAATATAAAAGAGTAAA
1 TTATTTTATTACAAATATAAAAGAGTAAA
* * *
75998719 TTA--TAATTA-AAATACTAAAA-A-CAACTT
1 TTATTTTATTACAAATA-TAAAAGAGTAA--A
75998746 TTATTTTATTACAAATATAAAAGAGTAAA
1 TTATTTTATTACAAATATAAAAGAGTAAA
75998775 TTAT
1 TTAT
75998779 AATTAAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 16
0.68 0.09 0.24
Matches are distributed among these distances:
25 2 0.04
26 6 0.13
27 13 0.28
29 17 0.37
30 6 0.13
31 2 0.04
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (29 bp):
TTATTTTATTACAAATATAAAAGAGTAAA
Found at i:75998737 original size:27 final size:27
Alignment explanation
Indices: 75998697--75998794 Score: 87
Period size: 27 Copynumber: 3.6 Consensus size: 27
75998687 CATTTATTTT
75998697 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
* * *
75998724 ATTA-AAATACTAAAA-A-CAACTTTTATTTT
1 ATTACAAATA-TAAAAGAGTAA--ATTA--TA
75998753 ATTACAAATATAAAAGAGTAAATTATA
1 ATTACAAATATAAAAGAGTAAATTATA
75998780 ATTA-AAATATTAAAA
1 ATTACAAATA-TAAAA
75998795 AAAATTTATT
Statistics
Matches: 56, Mismatches: 6, Indels: 18
0.70 0.08 0.22
Matches are distributed among these distances:
25 2 0.04
26 11 0.20
27 22 0.39
29 13 0.23
30 6 0.11
31 2 0.04
ACGTcount: A:0.57, C:0.05, G:0.04, T:0.34
Consensus pattern (27 bp):
ATTACAAATATAAAAGAGTAAATTATA
Found at i:75998740 original size:56 final size:55
Alignment explanation
Indices: 75998680--75998810 Score: 210
Period size: 56 Copynumber: 2.4 Consensus size: 55
75998670 TTCCTTATTC
75998680 AAAACATCATTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
1 AAAACA-CATTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
* *
75998736 AAAACAACTTTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATATTA
1 AAAAC-ACATTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
*
75998792 AAAA-AAATTTATTTTATTA
1 AAAACACATTTATTTTATTA
75998811 AATGAAAGAA
Statistics
Matches: 70, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
54 13 0.19
56 56 0.80
57 1 0.01
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.38
Consensus pattern (55 bp):
AAAACACATTTATTTTATTACAAATATAAAAGAGTAAATTATAATTAAAATACTA
Found at i:75999250 original size:18 final size:18
Alignment explanation
Indices: 75999229--75999263 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
75999219 AAAAGGAAAC
* *
75999229 ATATAAGGGTTAGGATAT
1 ATATAAGAGCTAGGATAT
75999247 ATATAAGAGCTAGGATA
1 ATATAAGAGCTAGGATA
75999264 CGCGCCTGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.29
Consensus pattern (18 bp):
ATATAAGAGCTAGGATAT
Found at i:75999352 original size:30 final size:30
Alignment explanation
Indices: 75999318--75999385 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 30
75999308 GTTGAAGTGT
* *
75999318 TGGGCCCGGTGACTGTGTGGGCACTATTGA
1 TGGGCCCGCTGACTGTATGGGCACTATTGA
** * * *
75999348 TGGGCCAACTGATTGTATGGGCATTGTTGA
1 TGGGCCCGCTGACTGTATGGGCACTATTGA
75999378 TGGGCCCG
1 TGGGCCCG
75999386 AGTCGTTATC
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.15, C:0.19, G:0.38, T:0.28
Consensus pattern (30 bp):
TGGGCCCGCTGACTGTATGGGCACTATTGA
Found at i:75999892 original size:7 final size:7
Alignment explanation
Indices: 75999882--75999921 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
75999872 TTGTATACAT
75999882 AATACTA
1 AATACTA
75999889 AATACTA
1 AATACTA
*
75999896 AATACTG
1 AATACTA
*
75999903 AATATTA
1 AATACTA
75999910 AATACTA
1 AATACTA
75999917 AATAC
1 AATAC
75999922 GAAACAAGTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.55, C:0.12, G:0.03, T:0.30
Consensus pattern (7 bp):
AATACTA
Found at i:75999900 original size:21 final size:21
Alignment explanation
Indices: 75999882--75999921 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
75999872 TTGTATACAT
75999882 AATACTAAATACTAAATACTG
1 AATACTAAATACTAAATACTG
*
75999903 AATATTAAATACTAAATAC
1 AATACTAAATACTAAATAC
75999922 GAAACAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.12, G:0.03, T:0.30
Consensus pattern (21 bp):
AATACTAAATACTAAATACTG
Found at i:76000936 original size:48 final size:49
Alignment explanation
Indices: 76000845--76000943 Score: 146
Period size: 48 Copynumber: 2.0 Consensus size: 49
76000835 ATAAAATTAA
* **
76000845 AATTAAATTTGCATAAATGAAAAAAAATATTAAATTGTATTGAAAAATT
1 AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
* *
76000894 AATTAAAATTGCATAAAT-TAAAAAAATATTAAATACTATTGAAATATT
1 AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
76000942 AA
1 AA
76000944 AATTATCACT
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 28 0.62
49 17 0.38
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (49 bp):
AATTAAAATTGCATAAATGAAAAAAAATATTAAATACTATTGAAAAATT
Found at i:76001103 original size:10 final size:10
Alignment explanation
Indices: 76001088--76001153 Score: 51
Period size: 10 Copynumber: 6.4 Consensus size: 10
76001078 TAAAGAGAGC
76001088 TTTGAGAAAA
1 TTTGAGAAAA
*
76001098 TTTGAGAGAA
1 TTTGAGAAAA
* *
76001108 TATGAGAGAAT
1 TTTGAGA-AAA
**
76001119 TTTTTGAAGAA
1 TTTGAGAA-AA
*
76001130 TTTGAGAGAA
1 TTTGAGAAAA
*
76001140 TTTGAGAGAA
1 TTTGAGAAAA
76001150 TTTG
1 TTTG
76001154 GATAGGAGGA
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
10 32 0.74
11 11 0.26
ACGTcount: A:0.39, C:0.00, G:0.26, T:0.35
Consensus pattern (10 bp):
TTTGAGAAAA
Found at i:76001116 original size:22 final size:22
Alignment explanation
Indices: 76001091--76001150 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
76001081 AGAGAGCTTT
76001091 GAGAAAATTTGAGAGAATATGA
1 GAGAAAATTTGAGAGAATATGA
** *
76001113 GAGAATTTTTTGA-AGAATTTGA
1 GAGAA-AATTTGAGAGAATATGA
76001135 GAG--AATTTGAGAGAAT
1 GAGAAAATTTGAGAGAAT
76001151 TTGGATAGGA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 5 0.16
20 5 0.16
22 16 0.52
23 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.27, T:0.30
Consensus pattern (22 bp):
GAGAAAATTTGAGAGAATATGA
Found at i:76011319 original size:30 final size:30
Alignment explanation
Indices: 76011258--76011320 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
76011248 AACTTGTTTA
**
76011258 TTGTTAATTTTGTTATTATTTTAGAGTCAT
1 TTGTTAATTTTGTTATTATTTTAGAACCAT
76011288 TTGTTAATTTTGTTATTATTTTAGAACCAT
1 TTGTTAATTTTGTTATTATTTTAGAACCAT
76011318 TTG
1 TTG
76011321 CCTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.05, G:0.13, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAACCAT
Found at i:76012037 original size:27 final size:29
Alignment explanation
Indices: 76012002--76012056 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
76011992 TTAAACAAAA
76012002 AATTATTGAAT-TT-TTTTTAAAGAGATG
1 AATTATTGAATATTGTTTTTAAAGAGATG
*
76012029 AATTCTTGAATATTGTTTTTAAAGAGAT
1 AATTATTGAATATTGTTTTTAAAGAGAT
76012057 TTCAGTACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 10 0.40
28 2 0.08
29 13 0.52
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (29 bp):
AATTATTGAATATTGTTTTTAAAGAGATG
Found at i:76012320 original size:135 final size:135
Alignment explanation
Indices: 76012155--76012425 Score: 445
Period size: 135 Copynumber: 2.0 Consensus size: 135
76012145 ACTTCATTTA
** *
76012155 TTTACATTATTAAAAATTTAAAGGTAAACTAT-AAAATAATTACCCAAATTTAAATATTTTTTAA
1 TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCA-CCAAATTTAAATATTTTTTAA
* * *
76012219 TACTCAATTATTAAATATTATATTTTAGTTATTAAAATTATGGAATTATAATATTTTAGTCACTC
65 TACTCAACTATTAAATATTACATTTTAGTTATTAAAATTATGGAATTATAATATTTTAGTCACCC
76012284 ATCTAT
130 ATCTAT
* *
76012290 TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCATCAAATTTAATTATTTTTTAAT
1 TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCACCAAATTTAAATATTTTTTAAT
*
76012355 ACTCAACTATTAAATATTACATTTTAGTTATTAAAATTATGGAGTTATAATATTTTAGTCACCCA
66 ACTCAACTATTAAATATTACATTTTAGTTATTAAAATTATGGAATTATAATATTTTAGTCACCCA
76012420 TCTAT
131 TCTAT
76012425 T
1 T
76012426 AATTACTTGT
Statistics
Matches: 126, Mismatches: 9, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
135 117 0.93
136 9 0.07
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (135 bp):
TTTACATTATTAAAAATTTAAAAATAAACTATAAAAATAATCACCAAATTTAAATATTTTTTAAT
ACTCAACTATTAAATATTACATTTTAGTTATTAAAATTATGGAATTATAATATTTTAGTCACCCA
TCTAT
Found at i:76013773 original size:262 final size:262
Alignment explanation
Indices: 76013395--76014062 Score: 1165
Period size: 262 Copynumber: 2.5 Consensus size: 262
76013385 TCTCCCTTTG
* * * ** * * * *
76013395 TGAAGCTCTTGCAAAATGTTCATGGGTGGATGAGGAGGGCTAATTAAGTTTCGAATCTTGTTATA
1 TGAAGCACTGGCAAAATGTTCATGGGAGGATGAGGAGACCAAATTAAGTTACTAATATT-TTATA
* * * * *
76013460 GCTTTGCGGAGCTTCTTTGGAGCAAATGGGCAATGGAGCTTGTGGAGCACCGCTCTCTGTTGGAG
65 -CCTTGTGGAGCATCTTTGGAGCAAATGAGCTATGGAGCTTGTGGAGCACCGCTCTCTGTTGGAG
76013525 GAATTGCTCACTTGGTGTCAGCTTGATGCTTTTTAGTTTGCAATCATACATAGGGGTATAGGAAG
129 GAATTGCTCACTTGGTGTCAGCTTGATGCTTTTTAGTTTGCAATCATACATAGGGGTATAGGAAG
76013590 GTAGTTGGAAAATCATGGTGGAGTTTCTGGTTTTGTTTCATTTTATGATTGGCGATTGCTGCTTC
194 GTAGTTGGAAAATCATGGTGGAGTTTCTGGTTTTGTTTCATTTTATGATTGGCGATTGCTGCTTC
76013655 CTTA
259 CTTA
76013659 TGAAGCACTGGCAAAATGTTCATGGGAGGATGAGGAGACCAAATTAAGTTACTAATATTTTATAC
1 TGAAGCACTGGCAAAATGTTCATGGGAGGATGAGGAGACCAAATTAAGTTACTAATATTTTATAC
76013724 CTTGTGGAGCATCTTTGGAGCAAATGAGCTATGGAGCTTGTGGAGCACCGCTCTCTGTTGGAGGA
66 CTTGTGGAGCATCTTTGGAGCAAATGAGCTATGGAGCTTGTGGAGCACCGCTCTCTGTTGGAGGA
76013789 ATTGCTCACTTGGTGTCAGCTTGATGCTTTTTAGTTTGCAATCATACATAGGGGTATAGGAAGGT
131 ATTGCTCACTTGGTGTCAGCTTGATGCTTTTTAGTTTGCAATCATACATAGGGGTATAGGAAGGT
76013854 AGTTGGAAAATCATGGTGGAGTTTCTGGTTTTGTTTCATTTTATGATTGGCGATTGCTGCTTCCT
196 AGTTGGAAAATCATGGTGGAGTTTCTGGTTTTGTTTCATTTTATGATTGGCGATTGCTGCTTCCT
76013919 TA
261 TA
76013921 TGAAGCACTGGCAAAATGTTCATGGGAGGATGAGGAGACCAAATTAAGTTACTAATATTTTATAC
1 TGAAGCACTGGCAAAATGTTCATGGGAGGATGAGGAGACCAAATTAAGTTACTAATATTTTATAC
* *
76013986 CTTGTGGAGCATCTTTGGAGCAAATGAGCTATGGAGCTTGTGGAGCACAGCTCTCTGTTTGAGGA
66 CTTGTGGAGCATCTTTGGAGCAAATGAGCTATGGAGCTTGTGGAGCACCGCTCTCTGTTGGAGGA
*
76014051 ATTGCTCTCTTG
131 ATTGCTCACTTG
76014063 AAGTGCTGGT
Statistics
Matches: 387, Mismatches: 17, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
262 332 0.86
263 5 0.01
264 50 0.13
ACGTcount: A:0.24, C:0.14, G:0.28, T:0.34
Consensus pattern (262 bp):
TGAAGCACTGGCAAAATGTTCATGGGAGGATGAGGAGACCAAATTAAGTTACTAATATTTTATAC
CTTGTGGAGCATCTTTGGAGCAAATGAGCTATGGAGCTTGTGGAGCACCGCTCTCTGTTGGAGGA
ATTGCTCACTTGGTGTCAGCTTGATGCTTTTTAGTTTGCAATCATACATAGGGGTATAGGAAGGT
AGTTGGAAAATCATGGTGGAGTTTCTGGTTTTGTTTCATTTTATGATTGGCGATTGCTGCTTCCT
TA
Found at i:76023631 original size:21 final size:21
Alignment explanation
Indices: 76023601--76023641 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
76023591 GTAAATAAAA
*
76023601 AAATTTAAAAAAATAAAAATT
1 AAATTAAAAAAAATAAAAATT
* *
76023622 AAATTAAAAATAATAGAAAT
1 AAATTAAAAAAAATAAAAAT
76023642 ACATTTTTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (21 bp):
AAATTAAAAAAAATAAAAATT
Found at i:76040061 original size:22 final size:22
Alignment explanation
Indices: 76040004--76040061 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
76039994 AACTATTTTT
*
76040004 TAAAA-ATAGTAAAATAAAAATA
1 TAAAATATAG-AAATTAAAAATA
** *
76040026 TAAAATGCATAAATTAAAAATA
1 TAAAATATAGAAATTAAAAATA
*
76040048 TCAAATATAGAAAT
1 TAAAATATAGAAAT
76040062 GAATATAAAT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (22 bp):
TAAAATATAGAAATTAAAAATA
Found at i:76044304 original size:13 final size:12
Alignment explanation
Indices: 76044286--76044315 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
76044276 GTGTTTAATG
76044286 ATTTTTATTATGA
1 ATTTTTA-TATGA
76044299 ATTTTTATATGA
1 ATTTTTATATGA
76044311 ATTTT
1 ATTTT
76044316 CTGGTGTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (12 bp):
ATTTTTATATGA
Found at i:76045326 original size:31 final size:31
Alignment explanation
Indices: 76045291--76045418 Score: 84
Period size: 31 Copynumber: 4.2 Consensus size: 31
76045281 CATTAGAGAT
*
76045291 TTAAAACTTGGGTAATTAAAATGAAAATACC
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
* * * *
76045322 TTAAAAATTGAGTGACCAAATTATGAAAAT---
1 TTAAAACTTGGGTAACTAAA--ATGAAAATACC
* ** * * * *
76045352 TT-TATTTTGGGTGACTAAAAGGAAAACACT
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
* *
76045382 TTAAAACTTGGGTAATTAAAATGAAAATATC
1 TTAAAACTTGGGTAACTAAAATGAAAATACC
76045413 TTAAAA
1 TTAAAA
76045419 ATTGAGTGAC
Statistics
Matches: 70, Mismatches: 21, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
27 6 0.09
29 12 0.17
30 4 0.06
31 40 0.57
33 8 0.11
ACGTcount: A:0.47, C:0.08, G:0.14, T:0.31
Consensus pattern (31 bp):
TTAAAACTTGGGTAACTAAAATGAAAATACC
Found at i:76045463 original size:91 final size:91
Alignment explanation
Indices: 76045290--76045478 Score: 335
Period size: 91 Copynumber: 2.1 Consensus size: 91
76045280 TCATTAGAGA
76045290 TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATGAAAATTTT
1 TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATGAAAATTTT
* *
76045355 ATTTTGGGTGACTAAAAGGAAAACAC
66 ATTTTGGATGACTAAAAGAAAAACAC
*
76045381 TTTAAAACTTGGGTAATTAAAATGAAAATATCTTAAAAATTGAGTGACCAAATTAT-AAAATTTT
1 TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATGAAAATTTT
76045445 ATTTTGGATGACTAAAAAGAAAAACAC
66 ATTTTGGATGACT-AAAAGAAAAACAC
76045472 TTTAAAA
1 TTTAAAA
76045479 TTTAAGTGAC
Statistics
Matches: 94, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
90 20 0.21
91 74 0.79
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (91 bp):
TTTAAAACTTGGGTAATTAAAATGAAAATACCTTAAAAATTGAGTGACCAAATTATGAAAATTTT
ATTTTGGATGACTAAAAGAAAAACAC
Found at i:76051941 original size:20 final size:20
Alignment explanation
Indices: 76051918--76051956 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
76051908 AATAATTAGA
*
76051918 AATTGAATAAAAGATTATGT
1 AATTGAATAAAAAATTATGT
**
76051938 AATTGTTTAAAAAATTATG
1 AATTGAATAAAAAATTATG
76051957 GAGTATTTGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.38
Consensus pattern (20 bp):
AATTGAATAAAAAATTATGT
Found at i:76059186 original size:33 final size:33
Alignment explanation
Indices: 76059140--76059205 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
76059130 AAAAGAAAAG
*
76059140 AAAAGATGGATTTGGTTAAATCTGTGAAGAACT
1 AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
76059173 AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
1 AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
76059206 CAAATTAGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.30
Consensus pattern (33 bp):
AAAAGATGAATTTGGTTAAATCTGTGAAGAACT
Found at i:76079279 original size:11 final size:11
Alignment explanation
Indices: 76079263--76079290 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
76079253 ATAAAATTTC
76079263 TTCACGAAATT
1 TTCACGAAATT
76079274 TTCACGAAATT
1 TTCACGAAATT
76079285 TTCACG
1 TTCACG
76079291 CAATCATGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.36
Consensus pattern (11 bp):
TTCACGAAATT
Found at i:76079615 original size:9 final size:9
Alignment explanation
Indices: 76079543--76079617 Score: 51
Period size: 9 Copynumber: 7.9 Consensus size: 9
76079533 CTTAATTTAA
76079543 TTTTAAAAT
1 TTTTAAAAT
* *
76079552 ATTAAAAAT
1 TTTTAAAAT
*
76079561 ATTTTATAAT
1 -TTTTAAAAT
* *
76079571 TTTTATACT
1 TTTTAAAAT
*
76079580 TCTTAAACAAT
1 T-TTTAA-AAT
*
76079591 TTTAATAAAT
1 TTTTA-AAAT
76079601 TTTTAAAAT
1 TTTTAAAAT
76079610 TTTTAAAA
1 TTTTAAAA
76079618 AATAATTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 8
0.74 0.14 0.11
Matches are distributed among these distances:
9 28 0.54
10 20 0.38
11 4 0.08
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (9 bp):
TTTTAAAAT
Found at i:76079615 original size:20 final size:20
Alignment explanation
Indices: 76079543--76079620 Score: 56
Period size: 20 Copynumber: 4.0 Consensus size: 20
76079533 CTTAATTTAA
*
76079543 TTTTAAAA-TATTAA-AAAT
1 TTTTAAAATTTTTAATAAAT
* *
76079561 ATTTTATAATTTTT-AT-ACT
1 -TTTTAAAATTTTTAATAAAT
* *
76079580 TCTTAAACAATTTTAATAAAT
1 TTTTAAA-ATTTTTAATAAAT
*
76079601 TTTTAAAATTTTTAAAAAAT
1 TTTTAAAATTTTTAATAAAT
76079621 AATTAAATGC
Statistics
Matches: 44, Mismatches: 10, Indels: 9
0.70 0.16 0.14
Matches are distributed among these distances:
18 5 0.11
19 15 0.34
20 16 0.36
21 8 0.18
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (20 bp):
TTTTAAAATTTTTAATAAAT
Found at i:76090201 original size:18 final size:18
Alignment explanation
Indices: 76090178--76090270 Score: 114
Period size: 18 Copynumber: 5.2 Consensus size: 18
76090168 CCCAACTACT
*
76090178 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
76090196 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
* *
76090214 GTATATGTGAATAGTACT
1 GTATACGTGAATAGTACC
* *
76090232 GTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
76090250 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
76090268 GTA
1 GTA
76090271 AAAGGTCGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 62 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:76090230 original size:36 final size:36
Alignment explanation
Indices: 76090178--76090270 Score: 132
Period size: 36 Copynumber: 2.6 Consensus size: 36
76090168 CCCAACTACT
* *
76090178 GTATACGTGAACAGTACCGTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
* * *
76090214 GTATATGTGAATAGTACTGTATATGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
*
76090250 ATATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
76090271 AAAGGTCGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.31
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:76093553 original size:18 final size:18
Alignment explanation
Indices: 76093530--76093572 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
76093520 TTTTAAAATG
76093530 TAATTAATTTAAATTT-TT
1 TAATTAA-TTAAATTTATT
76093548 TAATTAATTAAATTTATT
1 TAATTAATTAAATTTATT
76093566 TAATTAA
1 TAATTAA
76093573 AAACTTATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 8 0.33
18 16 0.67
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTAATTAAATTTATT
Found at i:76102471 original size:20 final size:20
Alignment explanation
Indices: 76102446--76102485 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
76102436 TTGATACCAA
76102446 CGAAATATGACAAGTTACAT
1 CGAAATATGACAAGTTACAT
76102466 CGAAATATGACAAGTTACAT
1 CGAAATATGACAAGTTACAT
76102486 TGATCCACTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
CGAAATATGACAAGTTACAT
Found at i:76104884 original size:3 final size:3
Alignment explanation
Indices: 76104876--76104906 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
76104866 TTTTACTTCT
76104876 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
76104907 ATAACAACGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:76108704 original size:20 final size:20
Alignment explanation
Indices: 76108679--76108724 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
76108669 ATGGGAGTAT
76108679 GGTGTTTGCTATTTGATTGC
1 GGTGTTTGCTATTTGATTGC
76108699 GGTGTTTGCTATTTGATTGC
1 GGTGTTTGCTATTTGATTGC
*
76108719 AGTGTT
1 GGTGTT
76108725 AGAAACATCT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.11, C:0.09, G:0.30, T:0.50
Consensus pattern (20 bp):
GGTGTTTGCTATTTGATTGC
Found at i:76118488 original size:19 final size:17
Alignment explanation
Indices: 76118456--76118490 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
76118446 CAATCATCAT
76118456 TTTAAAATTTTTAAATA
1 TTTAAAATTTTTAAATA
76118473 TTTAATAATATTTTAAAT
1 TTTAA-AAT-TTTTAAAT
76118491 GATGGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 3 0.19
19 8 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTAAAATTTTTAAATA
Found at i:76121271 original size:35 final size:35
Alignment explanation
Indices: 76121232--76121311 Score: 85
Period size: 35 Copynumber: 2.3 Consensus size: 35
76121222 AAATTTAGTA
* *
76121232 TTAAATCAATT-TTATTTTTTTGTAA-TTTTTATTTT
1 TTAAAT-AATTCTTA-TTTTATGGAATTTTTTATTTT
76121267 TTAAAT-ATTCTTATTTTATGGAATTTTTTATTTTT
1 TTAAATAATTCTTATTTTATGGAATTTTTTA-TTTT
*
76121302 TTAATTAATT
1 TTAAATAATT
76121312 AATTGTTTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
33 11 0.29
34 9 0.24
35 15 0.39
36 3 0.08
ACGTcount: A:0.28, C:0.03, G:0.04, T:0.66
Consensus pattern (35 bp):
TTAAATAATTCTTATTTTATGGAATTTTTTATTTT
Found at i:76122016 original size:27 final size:27
Alignment explanation
Indices: 76121985--76122040 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
76121975 TGGTACTCGT
*
76121985 AACGTCTTTATTTGTGTCAAAATTTCC
1 AACGTCCTTATTTGTGTCAAAATTTCC
76122012 AACGTCCTTATTTGTGTCAAAATTTCC
1 AACGTCCTTATTTGTGTCAAAATTTCC
76122039 AA
1 AA
76122041 ATATATAGTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.41
Consensus pattern (27 bp):
AACGTCCTTATTTGTGTCAAAATTTCC
Found at i:76124831 original size:30 final size:30
Alignment explanation
Indices: 76124796--76124867 Score: 94
Period size: 28 Copynumber: 2.4 Consensus size: 30
76124786 TCAAATGAAT
76124796 ATTTTATGTATAAAATTACACA-AAATTAA
1 ATTTTATGTATAAAATTACACATAAATTAA
* *
76124825 ATTTT-TATATAAAATTGCACATTAAATTAA
1 ATTTTATGTATAAAATTACACA-TAAATTAA
*
76124855 AATTTATGTATAA
1 ATTTTATGTATAA
76124868 TTTTGAGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 14 0.39
29 5 0.14
30 11 0.31
31 6 0.17
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.42
Consensus pattern (30 bp):
ATTTTATGTATAAAATTACACATAAATTAA
Found at i:76137442 original size:22 final size:23
Alignment explanation
Indices: 76137412--76137457 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
76137402 ATTAAGATAA
*
76137412 AAAATAAATT-AAAT-TATGAAT
1 AAAATAAATTGAAATATATAAAT
76137433 AAAATGAAATTGAAATATATAAAT
1 AAAAT-AAATTGAAATATATAAAT
76137457 A
1 A
76137458 CATCATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 5 0.24
22 5 0.24
23 4 0.19
24 7 0.33
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (23 bp):
AAAATAAATTGAAATATATAAAT
Found at i:76150570 original size:21 final size:20
Alignment explanation
Indices: 76150546--76150597 Score: 86
Period size: 20 Copynumber: 2.5 Consensus size: 20
76150536 TTATGCTACA
76150546 TCAGTATTCTTATCCTGAATT
1 TCAGTATT-TTATCCTGAATT
*
76150567 TCAGGATTTTATCCTGAATT
1 TCAGTATTTTATCCTGAATT
76150587 TCAGTATTTTA
1 TCAGTATTTTA
76150598 ATTTGGATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 22 0.76
21 7 0.24
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (20 bp):
TCAGTATTTTATCCTGAATT
Found at i:76150645 original size:20 final size:20
Alignment explanation
Indices: 76150620--76150666 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
76150610 TTTTTTTCAG
76150620 GATAAAATCCTAAAATTTAA
1 GATAAAATCCTAAAATTTAA
* *
76150640 GATAAAATCCTGAAATTTAG
1 GATAAAATCCTAAAATTTAA
76150660 GATAAAA
1 GATAAAA
76150667 ATACTAATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.09, G:0.11, T:0.28
Consensus pattern (20 bp):
GATAAAATCCTAAAATTTAA
Found at i:76151123 original size:34 final size:34
Alignment explanation
Indices: 76151080--76151147 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
76151070 GTAACACGAT
76151080 TAATGTGATTTGAACTCAAATCACGTCTAAAATG
1 TAATGTGATTTGAACTCAAATCACGTCTAAAATG
76151114 TAATGTGATTTGAACTCAAATCACGTCTAAAATG
1 TAATGTGATTTGAACTCAAATCACGTCTAAAATG
76151148 ATGATGACTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (34 bp):
TAATGTGATTTGAACTCAAATCACGTCTAAAATG
Found at i:76159192 original size:39 final size:39
Alignment explanation
Indices: 76159138--76159212 Score: 150
Period size: 39 Copynumber: 1.9 Consensus size: 39
76159128 AGATCTATAG
76159138 TAAGCCTTTAGAATAAAAAAAGACATCAAGTTAAAGATC
1 TAAGCCTTTAGAATAAAAAAAGACATCAAGTTAAAGATC
76159177 TAAGCCTTTAGAATAAAAAAAGACATCAAGTTAAAG
1 TAAGCCTTTAGAATAAAAAAAGACATCAAGTTAAAG
76159213 CTTAGGCTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.52, C:0.12, G:0.13, T:0.23
Consensus pattern (39 bp):
TAAGCCTTTAGAATAAAAAAAGACATCAAGTTAAAGATC
Found at i:76161071 original size:3 final size:3
Alignment explanation
Indices: 76161063--76161102 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
76161053 CTTTATACCT
76161063 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
76161103 ACAGAAACAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:76163296 original size:6 final size:7
Alignment explanation
Indices: 76163281--76163307 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
76163271 TCAATTTCTG
76163281 AAAATAA
1 AAAATAA
76163288 AAAATAA
1 AAAATAA
76163295 AAAATAA
1 AAAATAA
76163302 AAAATA
1 AAAATA
76163308 TTTTGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:76169680 original size:17 final size:17
Alignment explanation
Indices: 76169658--76169692 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
76169648 ACGTTACTCA
76169658 CCACTCTTACTAGTACG
1 CCACTCTTACTAGTACG
76169675 CCACTCTTACTAGTACG
1 CCACTCTTACTAGTACG
76169692 C
1 C
76169693 ATCTGATGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.23, C:0.37, G:0.11, T:0.29
Consensus pattern (17 bp):
CCACTCTTACTAGTACG
Found at i:76173580 original size:23 final size:24
Alignment explanation
Indices: 76173544--76173589 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
76173534 CCATCATTTT
*
76173544 AAAACATTTGTTTATCTTT-AAAAG
1 AAAACATTAGTTTAT-TTTCAAAAG
76173568 AAAAC-TTAGTTTATTTTCAAAA
1 AAAACATTAGTTTATTTTCAAAA
76173590 AAATTCATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 3 0.15
23 12 0.60
24 5 0.25
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (24 bp):
AAAACATTAGTTTATTTTCAAAAG
Found at i:76176680 original size:52 final size:52
Alignment explanation
Indices: 76176623--76176722 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
76176613 TAATCAAGCG
* *
76176623 ATTAACAATAAATGAGGCCGCATATATTTAATAAAAATCTAAGATTTTAGCC
1 ATTAACAAGAAATGAGCCCGCATATATTTAATAAAAATCTAAGATTTTAGCC
* *
76176675 ATTAACAAGAAATGAGCCCGTATATATTTAATAAAAATTTAAGATTTT
1 ATTAACAAGAAATGAGCCCGCATATATTTAATAAAAATCTAAGATTTT
76176723 TATGTTATAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (52 bp):
ATTAACAAGAAATGAGCCCGCATATATTTAATAAAAATCTAAGATTTTAGCC
Found at i:76176923 original size:3 final size:3
Alignment explanation
Indices: 76176915--76176975 Score: 56
Period size: 3 Copynumber: 20.3 Consensus size: 3
76176905 AAATAGATAT
* *
76176915 TTA TTA TTA TAA TTA TTAA TTA TTA TTA TTG TT- TATA TTA TTA -TA
1 TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA T-TA TTA TTA TTA
76176960 TTTA TTA TTA -TA TTA T
1 -TTA TTA TTA TTA TTA T
76176976 GGAATAAATT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
2 5 0.10
3 38 0.78
4 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:76176932 original size:12 final size:11
Alignment explanation
Indices: 76176915--76176975 Score: 63
Period size: 12 Copynumber: 5.4 Consensus size: 11
76176905 AAATAGATAT
76176915 TTATTATTATAA
1 TTATTATTAT-A
76176927 TTATTAATTATTA
1 TTATT-ATTA-TA
*
76176940 TTATTGTT-TA
1 TTATTATTATA
76176950 -TATTATTATA
1 TTATTATTATA
76176960 TTTATTATTATA
1 -TTATTATTATA
76176972 TTAT
1 TTAT
76176976 GGAATAAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
9 6 0.14
10 4 0.10
11 4 0.10
12 17 0.40
13 10 0.24
14 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TTATTATTATA
Found at i:76178142 original size:46 final size:46
Alignment explanation
Indices: 76178092--76178180 Score: 119
Period size: 46 Copynumber: 1.9 Consensus size: 46
76178082 ATGTGTAATG
*
76178092 ATTGAACTTGAAATGTG-A-TTGAAATAAAAGTGAAATTGAATTGTAT
1 ATTGAA-TTGAAA-GTGAATTTAAAATAAAAGTGAAATTGAATTGTAT
**
76178138 ATTGAATTGAAAGTGAATTTAAAATGGAAGTGAAATTGAATTG
1 ATTGAATTGAAAGTGAATTTAAAATAAAAGTGAAATTGAATTG
76178181 AGAATTGAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 3 0.08
45 7 0.18
46 28 0.74
ACGTcount: A:0.44, C:0.01, G:0.21, T:0.34
Consensus pattern (46 bp):
ATTGAATTGAAAGTGAATTTAAAATAAAAGTGAAATTGAATTGTAT
Found at i:76178149 original size:23 final size:24
Alignment explanation
Indices: 76178119--76178180 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 24
76178109 ATTGAAATAA
* *
76178119 AAGTGAAATTGAATTGT-ATATTG
1 AAGTGAAATTGAATTGTAAAATGG
* *
76178142 AATTGAAAGTGAATT-TAAAATGG
1 AAGTGAAATTGAATTGTAAAATGG
76178165 AAGTGAAATTGAATTG
1 AAGTGAAATTGAATTG
76178181 AGAATTGAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 1 0.03
23 30 0.97
ACGTcount: A:0.44, C:0.00, G:0.23, T:0.34
Consensus pattern (24 bp):
AAGTGAAATTGAATTGTAAAATGG
Found at i:76178188 original size:12 final size:11
Alignment explanation
Indices: 76178092--76178189 Score: 72
Period size: 11 Copynumber: 8.5 Consensus size: 11
76178082 ATGTGTAATG
76178092 ATTGAACTTGAA
1 ATTGAA-TTGAA
76178104 ATGTG-ATTGAA
1 AT-TGAATTGAA
** *
76178115 ATAAAAGTGAA
1 ATTGAATTGAA
*
76178126 ATTGAATTGTAT
1 ATTGAATTG-AA
76178138 ATTGAATTGAA
1 ATTGAATTGAA
* *
76178149 AGTGAATTTAAA
1 ATTGAA-TTGAA
* *
76178161 ATGGAAGTGAA
1 ATTGAATTGAA
76178172 ATTGAATTGAGA
1 ATTGAATTGA-A
76178184 ATTGAA
1 ATTGAA
76178190 AATCCTATTA
Statistics
Matches: 65, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
11 35 0.54
12 28 0.43
13 2 0.03
ACGTcount: A:0.45, C:0.01, G:0.21, T:0.33
Consensus pattern (11 bp):
ATTGAATTGAA
Found at i:76179206 original size:7 final size:7
Alignment explanation
Indices: 76179118--76179206 Score: 55
Period size: 7 Copynumber: 13.3 Consensus size: 7
76179108 TTGATATAAA
76179118 AATATAT
1 AATATAT
*
76179125 ATTATAT
1 AATATAT
*
76179132 ATTATATT
1 AATATA-T
*
76179140 AA-CT-T
1 AATATAT
*
76179145 AATATTT
1 AATATAT
76179152 AAGTAT-T
1 AA-TATAT
76179159 AATATAT
1 AATATAT
76179166 AATATAT
1 AATATAT
*
76179173 TATAT-T
1 AATATAT
*
76179179 ATTATAT
1 AATATAT
*
76179186 TATATAT
1 AATATAT
76179193 -A-ATAT
1 AATATAT
76179198 AATATAT
1 AATATAT
76179205 AA
1 AA
76179207 AACATAAGTA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 7 0.11
6 10 0.15
7 43 0.66
8 5 0.08
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (7 bp):
AATATAT
Found at i:76179626 original size:15 final size:15
Alignment explanation
Indices: 76179590--76179627 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
76179580 AATAGATTTC
*
76179590 ATGAAGAGTCGGAAA
1 ATGAAGTGTCGGAAA
76179605 ATGAAGTGTCGGAAA
1 ATGAAGTGTCGGAAA
76179620 ATGAAGTG
1 ATGAAGTG
76179628 GAGAGTAGGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.42, C:0.05, G:0.34, T:0.18
Consensus pattern (15 bp):
ATGAAGTGTCGGAAA
Found at i:76185430 original size:39 final size:39
Alignment explanation
Indices: 76185340--76185435 Score: 101
Period size: 41 Copynumber: 2.5 Consensus size: 39
76185330 GATATTTTTG
* *
76185340 ATATAA-A-AATATATATTATATATTATATTAACTTAAT
1 ATATAATATAATATATAATATATAATATATTAACTTAAT
*
76185377 ATTTAAGTATTAATATATAATATATAATATTATTATA-TT-AT
1 ATATAA-TA-TAATATATAATATATAATA-TATTA-ACTTAAT
76185418 ATATAATATAATATATAA
1 ATATAATATAATATATAA
76185436 AACATAAGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
37 5 0.10
39 11 0.22
40 2 0.04
41 23 0.47
42 7 0.14
43 1 0.02
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (39 bp):
ATATAATATAATATATAATATATAATATATTAACTTAAT
Found at i:76185435 original size:7 final size:7
Alignment explanation
Indices: 76185347--76185435 Score: 64
Period size: 7 Copynumber: 13.3 Consensus size: 7
76185337 TTGATATAAA
76185347 AATATAT
1 AATATAT
*
76185354 ATTATAT
1 AATATAT
*
76185361 ATTATATT
1 AATATA-T
*
76185369 AA-CT-T
1 AATATAT
*
76185374 AATATTT
1 AATATAT
76185381 AAGTAT-T
1 AA-TATAT
76185388 AATATAT
1 AATATAT
76185395 AATATAT
1 AATATAT
76185402 AATAT-T
1 AATATAT
*
76185408 ATTATAT
1 AATATAT
*
76185415 TATATAT
1 AATATAT
76185422 -A-ATAT
1 AATATAT
76185427 AATATAT
1 AATATAT
76185434 AA
1 AA
76185436 AACATAAGTA
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
5 7 0.10
6 11 0.16
7 44 0.66
8 5 0.07
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (7 bp):
AATATAT
Found at i:76190942 original size:4 final size:4
Alignment explanation
Indices: 76190933--76190959 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
76190923 ATTGTAATAA
76190933 AATT AATT AATT AATT AATT AATT AAT
1 AATT AATT AATT AATT AATT AATT AAT
76190960 AAAGTAGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:76199159 original size:12 final size:11
Alignment explanation
Indices: 76199129--76199211 Score: 64
Period size: 12 Copynumber: 7.3 Consensus size: 11
76199119 TTTACAAATA
*
76199129 AAATATAT-AC
1 AAATATATAAT
76199139 AAATCATATAAT
1 AAAT-ATATAAT
76199151 AAATAATATAA-
1 AAAT-ATATAAT
76199162 AAATATATAAT
1 AAATATATAAT
*
76199173 AAA-ATCTATAT
1 AAATATATA-AT
76199184 AATATATATATAT
1 AA-ATATATA-AT
*
76199197 ATATATATATAT
1 AAATATATA-AT
76199209 AAA
1 AAA
76199212 AGAAAGATAG
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
10 14 0.23
11 15 0.25
12 24 0.39
13 8 0.13
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (11 bp):
AAATATATAAT
Found at i:76199167 original size:33 final size:36
Alignment explanation
Indices: 76199131--76199212 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 36
76199121 TACAAATAAA
76199131 ATATATACAAATC-ATATAATAAATA-ATATAAAAAT
1 ATATATA-AAATCTATATAATAAATATATATAAAAAT
* * *
76199166 ATATAATAAAATCTATATAATATATATATATATATAT
1 ATAT-ATAAAATCTATATAATAAATATATATAAAAAT
76199203 ATATATAAAA
1 ATATATAAAA
76199213 GAAAGATAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
35 9 0.22
36 20 0.49
37 12 0.29
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (36 bp):
ATATATAAAATCTATATAATAAATATATATAAAAAT
Found at i:76199177 original size:23 final size:22
Alignment explanation
Indices: 76199125--76199212 Score: 79
Period size: 23 Copynumber: 3.8 Consensus size: 22
76199115 ATAATTTACA
*
76199125 AATAAAATATATACAAATCATAT
1 AATAAAATATATAAAAAT-ATAT
76199148 AAT-AAATAATATAAAAATATAT
1 AATAAAAT-ATATAAAAATATAT
* *
76199170 AATAAAATCTATATAATATATAT
1 AATAAAATATATA-AAAATATAT
*
76199193 ATATATATATATATATAAAA
1 A-ATA-AAATATATA-AAAA
76199213 GAAAGATAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
22 15 0.28
23 25 0.46
24 3 0.06
25 11 0.20
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (22 bp):
AATAAAATATATAAAAATATAT
Found at i:76199184 original size:2 final size:2
Alignment explanation
Indices: 76199179--76199209 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
76199169 TAATAAAATC
76199179 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
76199210 AAAGAAAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:76199296 original size:21 final size:22
Alignment explanation
Indices: 76199272--76199322 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
76199262 ATGCATAAAT
* *
76199272 AAAATATAATGAAAT-ATGATA
1 AAAATATAATAAAATAATAATA
76199293 AAAATAT-ATAAAATAATAATA
1 AAAATATAATAAAATAATAATA
*
76199314 ATAATATAA
1 AAAATATAA
76199323 GAAGTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 6 0.24
21 18 0.72
22 1 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (22 bp):
AAAATATAATAAAATAATAATA
Found at i:76201271 original size:86 final size:85
Alignment explanation
Indices: 76201005--76201273 Score: 219
Period size: 86 Copynumber: 3.1 Consensus size: 85
76200995 CCAAATCATT
*
76201005 TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTTGCTATGTATCTGCTCTCCGTCGAAA
1 TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATC-TGCTATGTGTCTGCTCTCC-TCGAAA
* *
76201070 TGGAAATACCAGATCTGTTATC
64 TGGAGATGCCAGATCTGTTATC
** * * * * * *
76201092 TTGGATCTGCTTTGGTGTAAAAACATCCGAAAGTCAAATCTGCTATGTCTTCGATTTG-T-TCCT
1 TTGGATCTGC-TT-CAGTAAAATCATCTGAAGGTTAGATCTGCTATG---T-G-TCTGCTCTCCT
* *** *
76201155 TGTAAACACAAGAATG-CAAATC----ATC
59 CG-AAA-TGGAG-ATGCCAGATCTGTTATC
*
76201180 TTGGATCTGCTTCAGTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAAT
1 TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCC-TCGAAAT
76201245 GGAGATGCCAGATCTGTTATC
65 GGAGATGCCAGATCTGTTATC
76201266 TTGGATCT
1 TTGGATCT
76201274 ATTTTGGTGT
Statistics
Matches: 134, Mismatches: 30, Indels: 37
0.67 0.15 0.18
Matches are distributed among these distances:
81 6 0.04
82 9 0.07
83 7 0.05
84 2 0.01
86 36 0.27
87 12 0.09
88 22 0.16
89 19 0.14
90 2 0.01
91 7 0.05
92 7 0.05
93 5 0.04
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (85 bp):
TTGGATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCTCGAAATG
GAGATGCCAGATCTGTTATC
Found at i:76201609 original size:175 final size:174
Alignment explanation
Indices: 76200953--76201670 Score: 1049
Period size: 175 Copynumber: 4.1 Consensus size: 174
76200943 TGAAAGCCAA
* * ** * *
76200953 ATCTGCTGTGTCTTTGATTTACTCCTTGTGAACACAATG-ATGCCAAATCATTTTGGATCTGCTT
1 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAA-GAATG-CAAATCATCTTGGATCTGCTT
* * *
76201017 CAGTA-AAATCATCTGAAGGTTAGATCTTGCTATGTATCTGCTCTCCGTCGAAATGGAAATACCA
64 CAGTATAAA-CATCTGAAGGTTAGATC-TGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCA
* * *
76201081 GATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCGAAAGTCAA
127 GATCTGTTATCTTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAG
76201129 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCA
1 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCA
* *
76201194 GTATAATCATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATC
66 GTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATC
** *
76201259 TGTTATCTTGGATCTATTTTGGTGTGAGAACATCCAAAAGTCAG
131 TGTTATCTTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAG
* *
76201303 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACATAAGAATGCCAA--A---T--ATCTGCTTCA
1 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCA
* * *
76201361 GTATAATCACCTGAAGGTTAAATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATC
66 GTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATC
* *
76201426 TGTTATCTTGGATCTGTTTTGGTGTGAGAACATCCAAAAGTCAG
131 TGTTATCTTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAG
* *
76201470 ATCTGCCATATCTTCGATTTGTTCCTTGTAAACACAAGAATGTCAAATCATCTTGGATCTGCTTC
1 ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTGCTTC
* * *
76201535 AGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTTTCCGTTGAAATGGAGATGCCAGAT
65 AGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGAT
*
76201600 CTATTATCTTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAG
130 CTGTTATCTTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAG
*
76201645 ATCTGCTATGTCTTCGATTTGCTCCT
1 ATCTGCTATGTCTTCGATTTGTTCCT
76201671 CGTCGAAGAT
Statistics
Matches: 493, Mismatches: 39, Indels: 21
0.89 0.07 0.04
Matches are distributed among these distances:
167 154 0.31
168 3 0.01
169 1 0.00
170 1 0.00
172 1 0.00
173 1 0.00
174 119 0.24
175 176 0.36
176 37 0.08
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.35
Consensus pattern (174 bp):
ATCTGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCA
GTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAGATGCCAGATC
TGTTATCTTGGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAG
Found at i:76201618 original size:86 final size:86
Alignment explanation
Indices: 76201351--76201619 Score: 210
Period size: 86 Copynumber: 3.1 Consensus size: 86
76201341 AATGCCAAAT
* * * * * *
76201351 ATCTGCTTCAGTATAATCACCTGAAGGTTAAATCTGCTATGTGTCTGCTCTCCGTCGAAATGGAG
1 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTTTCCGTTGAAATGGAG
*
76201416 ATGCCAGATCTGTTATCTTGG
66 ATGCCAGATCTATTATCTTGG
* ** * ** * * *
76201437 ATCTGTTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCCATATCTTCGATTTG--TTCC-TTGT
1 ATCTGCTTCAGTAT-A-AACATCTGAAGGTTAGATCTG-C-TAT-GT-G-TTTGCTTTCCGTTG-
*** * *
76201499 AAACACAAGAATGTCA-A---ATCATCTTGG
58 AAA-TGGAG-ATGCCAGATCTATTATCTTGG
76201526 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTTTCCGTTGAAATGGAG
1 ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTTTCCGTTGAAATGGAG
76201591 ATGCCAGATCTATTATCTTGG
66 ATGCCAGATCTATTATCTTGG
76201612 ATCTGCTT
1 ATCTGCTT
76201620 TGGTGTGAAA
Statistics
Matches: 131, Mismatches: 35, Indels: 34
0.65 0.17 0.17
Matches are distributed among these distances:
82 9 0.07
83 4 0.03
84 8 0.06
85 6 0.05
86 28 0.21
87 18 0.14
88 15 0.11
89 19 0.15
90 5 0.04
91 7 0.05
92 4 0.03
93 8 0.06
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.35
Consensus pattern (86 bp):
ATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTTTGCTTTCCGTTGAAATGGAG
ATGCCAGATCTATTATCTTGG
Found at i:76201635 original size:342 final size:342
Alignment explanation
Indices: 76201009--76201670 Score: 1101
Period size: 342 Copynumber: 1.9 Consensus size: 342
76200999 ATCATTTTGG
* *
76201009 ATCTGCTTCAGTAAAATCATCTGAAGGTTAGATCTTGCTATGTATCTGCTCTCCGTCGAAATGGA
1 ATCTGCTTCAGTAAAATCACCTGAAGGTTAAATCTTGCTATGTATCTGCTCTCCGTCGAAATGGA
* * *
76201074 AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCGAAAGTCAAATCTGCTATG
66 AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCAAAAGTCAAATCTGCCATA
*
76201139 TCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAATCAT
131 TCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAAACAT
*
76201204 CTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTGTTATCTTG
196 CTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTATTATCTTG
* * *
76201269 GATCTATTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCTATGTCTTCGATTTGTTCCTTGTAA
261 GATCTACTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAA
76201334 ACATAAGAATGCCAAAT
326 ACATAAGAATGCCAAAT
* *
76201351 ATCTGCTTCAGTATAATCACCTGAAGGTTAAATC-TGCTATGTGTCTGCTCTCCGTCGAAATGGA
1 ATCTGCTTCAGTAAAATCACCTGAAGGTTAAATCTTGCTATGTATCTGCTCTCCGTCGAAATGGA
* * * * * *
76201415 GATGCCAGATCTGTTATCTTGGATCTGTTTTGGTGTGAGAACATCCAAAAGTCAGATCTGCCATA
66 AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCAAAAGTCAAATCTGCCATA
76201480 TCTTCGATTTGTTCCTTGTAAACACAAGAATGTCAAATCATCTTGGATCTGCTTCAGTATAAACA
131 TCTTCGATTTGTTCCTTGTAAACACAAGAATG-CAAATCATCTTGGATCTGCTTCAGTATAAACA
* * * *
76201545 TCTGAAGGTTAGATCTGCTATGTGTTTGCTTTCCGTTGAAATGGAGATGCCAGATCTATTATCTT
195 TCTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTATTATCTT
*
76201610 GGATCTGCTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCT
260 GGATCTACTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCT
76201671 CGTCGAAGAT
Statistics
Matches: 296, Mismatches: 23, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
341 117 0.40
342 179 0.60
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (342 bp):
ATCTGCTTCAGTAAAATCACCTGAAGGTTAAATCTTGCTATGTATCTGCTCTCCGTCGAAATGGA
AATACCAGATCTGTTATCTTGGATCTGCTTTGGTGTAAAAACATCCAAAAGTCAAATCTGCCATA
TCTTCGATTTGTTCCTTGTAAACACAAGAATGCAAATCATCTTGGATCTGCTTCAGTATAAACAT
CTGAAGGTTAGATCTGCTATGTGTCTGCTCTCCATCGAAATGGAGATGCCAGATCTATTATCTTG
GATCTACTTTGGTGTGAAAACATCCAAAAGTCAGATCTGCTATGTCTTCGATTTGCTCCTTGTAA
ACATAAGAATGCCAAAT
Found at i:76206377 original size:146 final size:146
Alignment explanation
Indices: 76206113--76206415 Score: 570
Period size: 146 Copynumber: 2.1 Consensus size: 146
76206103 CTATAATGTC
*
76206113 CTCCTCCGCATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
1 CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
*
76206178 AGGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
66 AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
76206243 TTAATCACTAAGAAAT
131 TTAATCACTAAGAAAT
76206259 CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
1 CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
76206324 AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
66 AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
76206389 TTAATCACTAAGAAAT
131 TTAATCACTAAGAAAT
* *
76206405 CTACTTCGTAT
1 CTCCTCCGTAT
76206416 ATGTTTGGCC
Statistics
Matches: 153, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 153 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (146 bp):
CTCCTCCGTATTGATGGTTATTAACCGTCCATCGGTCACTAGTTTCAATTTCTGGTGCAACGACG
AAGGCACCGCTCCTGCTGAGTGTATCCATGGCCTGCCTAATAAGCAATTGTAGGAAGGCTTGATA
TTAATCACTAAGAAAT
Found at i:76211069 original size:31 final size:32
Alignment explanation
Indices: 76211030--76211113 Score: 86
Period size: 31 Copynumber: 2.7 Consensus size: 32
76211020 ATGTTTGGGT
*
76211030 TAGG-ACTAAAATT-TCAAATTTTGAAAAGTA
1 TAGGAACTAAAATTATCAAATTTTAAAAAGTA
*
76211060 TAGGAACTAAAATTGA-CCAA-TTTAAAAAGTA
1 TAGGAACTAAAATT-ATCAAATTTTAAAAAGTA
* *
76211091 CAAGAACTAAAATTAATCAAATT
1 TAGGAACTAAAATT-ATCAAATT
76211114 AAACTTTAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
30 4 0.09
31 32 0.74
32 6 0.14
33 1 0.02
ACGTcount: A:0.51, C:0.10, G:0.11, T:0.29
Consensus pattern (32 bp):
TAGGAACTAAAATTATCAAATTTTAAAAAGTA
Found at i:76216499 original size:11 final size:11
Alignment explanation
Indices: 76216483--76216525 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
76216473 TAGAATATAT
76216483 CCCATACCTTG
1 CCCATACCTTG
*
76216494 CCCATACCTTT
1 CCCATACCTTG
*
76216505 CCCATACC-TA
1 CCCATACCTTG
76216515 CCCATACCTTG
1 CCCATACCTTG
76216526 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:76216510 original size:22 final size:21
Alignment explanation
Indices: 76216482--76216524 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
76216472 TTAGAATATA
*
76216482 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
76216504 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
76216525 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:76217083 original size:18 final size:18
Alignment explanation
Indices: 76217056--76217130 Score: 114
Period size: 18 Copynumber: 4.2 Consensus size: 18
76217046 TACGACCGTT
*
76217056 TACGGTACTATTCACGTA
1 TACGGCACTATTCACGTA
76217074 TACGGCACTATTCACGTA
1 TACGGCACTATTCACGTA
*
76217092 TACGGCACTATTCACATA
1 TACGGCACTATTCACGTA
* *
76217110 TACGGTACTGTTCACGTA
1 TACGGCACTATTCACGTA
76217128 TAC
1 TAC
76217131 AGTAGTTGGG
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (18 bp):
TACGGCACTATTCACGTA
Found at i:76221194 original size:11 final size:11
Alignment explanation
Indices: 76221178--76221220 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
76221168 TAGAATATAT
76221178 CCCATACCTTG
1 CCCATACCTTG
*
76221189 CCCATACCTTT
1 CCCATACCTTG
*
76221200 CCCATACC-TA
1 CCCATACCTTG
76221210 CCCATACCTTG
1 CCCATACCTTG
76221221 GAAAGGTCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.21, C:0.47, G:0.05, T:0.28
Consensus pattern (11 bp):
CCCATACCTTG
Found at i:76221205 original size:22 final size:21
Alignment explanation
Indices: 76221177--76221219 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
76221167 TTAGAATATA
*
76221177 TCCCATACCTTGCCCATACCTT
1 TCCCATACC-TACCCATACCTT
76221199 TCCCATACCTACCCATACCTT
1 TCCCATACCTACCCATACCTT
76221220 GGAAAGGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.21, C:0.47, G:0.02, T:0.30
Consensus pattern (21 bp):
TCCCATACCTACCCATACCTT
Found at i:76222796 original size:38 final size:37
Alignment explanation
Indices: 76222738--76222813 Score: 125
Period size: 38 Copynumber: 2.0 Consensus size: 37
76222728 ATACTTAAAA
* *
76222738 AGAAAATTCAATGAGTCATACCTTCCCATAAATATTCT
1 AGAAAATTCAACGAGCCATACCTTCCC-TAAATATTCT
76222776 AGAAAATTCAACGAGCCATACCTTCCCTAAATATTCT
1 AGAAAATTCAACGAGCCATACCTTCCCTAAATATTCT
76222813 A
1 A
76222814 ACATATGTGA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 11 0.31
38 25 0.69
ACGTcount: A:0.39, C:0.24, G:0.08, T:0.29
Consensus pattern (37 bp):
AGAAAATTCAACGAGCCATACCTTCCCTAAATATTCT
Found at i:76224380 original size:15 final size:16
Alignment explanation
Indices: 76224362--76224401 Score: 57
Period size: 15 Copynumber: 2.6 Consensus size: 16
76224352 CCATATTGAA
*
76224362 TATTTTTATAT-TATT
1 TATTTTTATATATAAT
76224377 TATTTTTA-ATATAAT
1 TATTTTTATATATAAT
76224392 TATTTTTATA
1 TATTTTTATA
76224402 ATTTTCTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 2 0.09
15 19 0.86
16 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
TATTTTTATATATAAT
Found at i:76224428 original size:15 final size:15
Alignment explanation
Indices: 76224408--76224441 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
76224398 TATAATTTTC
* *
76224408 TTTTAATGTTTAAAA
1 TTTTAATATCTAAAA
76224423 TTTTAATATCTAAAA
1 TTTTAATATCTAAAA
76224438 TTTT
1 TTTT
76224442 CATAAATCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (15 bp):
TTTTAATATCTAAAA
Found at i:76224551 original size:25 final size:25
Alignment explanation
Indices: 76224521--76224571 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
76224511 TACTTAACAT
76224521 TTTAAAAATTTTCATTCAAACATAC
1 TTTAAAAATTTTCATTCAAACATAC
76224546 TTTAAAAATTTTCATTCAAACATAC
1 TTTAAAAATTTTCATTCAAACATAC
76224571 T
1 T
76224572 CTAATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (25 bp):
TTTAAAAATTTTCATTCAAACATAC
Found at i:76224619 original size:23 final size:23
Alignment explanation
Indices: 76224575--76224619 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
76224565 ACATACTCTA
**
76224575 ATTTTTTTTATATTAGGTTATAG
1 ATTTTTTTTATATTAAATTATAG
76224598 ATTTTTTTTAT-TTAAATATATA
1 ATTTTTTTTATATTAAAT-TATA
76224620 TATATTAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (23 bp):
ATTTTTTTTATATTAAATTATAG
Found at i:76226067 original size:21 final size:21
Alignment explanation
Indices: 76226041--76226083 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
76226031 CATCTTGGTT
76226041 AATGTCATATGTTAGTCCTAC
1 AATGTCATATGTTAGTCCTAC
76226062 AATGTCATATGTTAGTCCTAC
1 AATGTCATATGTTAGTCCTAC
76226083 A
1 A
76226084 CTGTATACAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (21 bp):
AATGTCATATGTTAGTCCTAC
Found at i:76228933 original size:20 final size:20
Alignment explanation
Indices: 76228896--76228952 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
76228886 ATTTATCATT
*
76228896 ATTATTATTCTATCAAATTATA
1 ATTATTA-T-TATTAAATTATA
*
76228918 ATT-TATATTATTAAATTATG
1 ATTAT-TATTATTAAATTATA
76228938 ATTATTATTATTAAA
1 ATTATTATTATTAAA
76228953 AATAAATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 23 0.74
21 3 0.10
22 5 0.16
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.53
Consensus pattern (20 bp):
ATTATTATTATTAAATTATA
Found at i:76229244 original size:13 final size:14
Alignment explanation
Indices: 76229226--76229272 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 14
76229216 TTATTAAGTT
76229226 AATAAAATAAAAG-
1 AATAAAATAAAAGA
* *
76229239 AATAAAAGAAATGA
1 AATAAAATAAAAGA
76229253 AATAAAAT-AAAGA
1 AATAAAATAAAAGA
*
76229266 AACAAAA
1 AATAAAA
76229273 CAAAGTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
13 21 0.75
14 7 0.25
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.13
Consensus pattern (14 bp):
AATAAAATAAAAGA
Found at i:76233477 original size:42 final size:42
Alignment explanation
Indices: 76233428--76233542 Score: 178
Period size: 42 Copynumber: 2.7 Consensus size: 42
76233418 CTTCGTTTTC
** *
76233428 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCATATAA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCATAT-A
*
76233471 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
76233512 TCGATGCCATAGCCCAACTATGGTCTTACAC
1 TCGATGCCATAGCCCAACTATGGTCTTACAC
76233543 GAATTAAATA
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
41 2 0.03
42 63 0.95
43 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (42 bp):
TCGATGCCATAGCCCAACTATGGTCTTACACATATTCATATA
Found at i:76233653 original size:7 final size:7
Alignment explanation
Indices: 76233641--76233669 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
76233631 TATACGGAAA
76233641 TCACTTG
1 TCACTTG
76233648 TCACTTG
1 TCACTTG
76233655 TCACTTG
1 TCACTTG
76233662 TCACTTG
1 TCACTTG
76233669 T
1 T
76233670 AGCCGAAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.14, C:0.28, G:0.14, T:0.45
Consensus pattern (7 bp):
TCACTTG
Found at i:76233703 original size:31 final size:31
Alignment explanation
Indices: 76233668--76233816 Score: 244
Period size: 31 Copynumber: 4.8 Consensus size: 31
76233658 CTTGTCACTT
*
76233668 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
76233699 GTAGCCGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
76233730 GTAGCCGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
76233761 GTAGCTGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
76233792 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
76233817 TGTCATTTAT
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 112 1.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:76233900 original size:50 final size:51
Alignment explanation
Indices: 76233792--76233920 Score: 190
Period size: 50 Copynumber: 2.5 Consensus size: 51
76233782 CACTGATCAG
* * *
76233792 GTAGCTGAAGCTACCACTTTTCACTTGTCATTTATCATTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTATCATTGATCAGATAAGT
* *
76233843 GTCGCCGAAGCTATCACTTATCACTT-TCAATTT-TCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTC-ATTTATCATTGATCAGATAAGT
76233893 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
76233921 TGCCATGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
50 43 0.61
51 27 0.39
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTATCATTGATCAGATAAGT
Found at i:76252631 original size:21 final size:22
Alignment explanation
Indices: 76252592--76252633 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
76252582 AACATTAAAA
*
76252592 AAATATATTTTTATAATTTTTT
1 AAATATATTTTAATAATTTTTT
*
76252614 AAATA-ATTTTAATGATTTTT
1 AAATATATTTTAATAATTTTT
76252634 ATTTTTTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (22 bp):
AAATATATTTTAATAATTTTTT
Found at i:76258679 original size:9 final size:8
Alignment explanation
Indices: 76258602--76258683 Score: 52
Period size: 8 Copynumber: 10.2 Consensus size: 8
76258592 TGAATAAAGC
76258602 AATATATAA
1 AATA-ATAA
76258611 AATCAATAA
1 AAT-AATAA
76258620 AACTAAT-A
1 AA-TAATAA
76258628 AA-AATAA
1 AATAATAA
76258635 AATAAT--
1 AATAATAA
76258641 AATAA-AGA
1 AATAATA-A
76258649 AATAA-AGA
1 AATAATA-A
76258657 AATAA-ATA
1 AATAATA-A
76258665 AATAATAA
1 AATAATAA
76258673 TAATAATAA
1 -AATAATAA
76258682 AA
1 AA
76258684 GGAAAAGAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 19
0.76 0.01 0.23
Matches are distributed among these distances:
6 8 0.13
7 3 0.05
8 29 0.46
9 21 0.33
10 2 0.03
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:76259637 original size:18 final size:18
Alignment explanation
Indices: 76259616--76259833 Score: 64
Period size: 18 Copynumber: 11.7 Consensus size: 18
76259606 GAACAATTAT
*
76259616 TTATTCAATAACAGTCAG
1 TTATTCAATAACAATCAG
** * *
76259634 TTATTCGGTAACAATTAA
1 TTATTCAATAACAATCAG
* *
76259652 TTATTCAATAATAACCAG
1 TTATTCAATAACAATCAG
* *
76259670 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCA--AT--AAC-A---ATCAG
* * * *
76259696 TTATCCAGTAACAGTCAA
1 TTATTCAATAACAATCAG
*
76259714 TTATTCAGTAA-AATCAG
1 TTATTCAATAACAATCAG
* * *
76259731 GTATTCAGTAACAATTAAG
1 TTATTCAATAACAA-TCAG
* *
76259750 TTATTCAGTAACAGTCA-
1 TTATTCAATAACAATCAG
* *
76259767 TTCATTCAGTGACAATCAG
1 TT-ATTCAATAACAATCAG
* ** *
76259786 TTATTCAGTAATGATCAA
1 TTATTCAATAACAATCAG
* * *
76259804 TTATTC-AGAATATTCAG
1 TTATTCAATAACAATCAG
*
76259821 TTATTCAGTAACA
1 TTATTCAATAACA
76259834 GTCTAATATC
Statistics
Matches: 144, Mismatches: 43, Indels: 26
0.68 0.20 0.12
Matches are distributed among these distances:
17 28 0.19
18 82 0.57
19 17 0.12
20 2 0.01
21 1 0.01
22 3 0.02
23 1 0.01
24 1 0.01
26 9 0.06
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATTCAATAACAATCAG
Found at i:76259671 original size:36 final size:36
Alignment explanation
Indices: 76259607--76259675 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
76259597 TAACAATCAG
* **
76259607 AACAATTATTTATTCAATAACAGTCAGTTATTCGGT
1 AACAATTAATTATTCAATAACAACCAGTTATTCGGT
*
76259643 AACAATTAATTATTCAATAATAACCAGTTATTC
1 AACAATTAATTATTCAATAACAACCAGTTATTC
76259676 AGTATCGATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (36 bp):
AACAATTAATTATTCAATAACAACCAGTTATTCGGT
Found at i:76259877 original size:71 final size:71
Alignment explanation
Indices: 76259697--76259881 Score: 203
Period size: 71 Copynumber: 2.6 Consensus size: 71
76259687 ATTGATCGGT
* **
76259697 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGGTATTCAGTAACAATTAAGTTATTCAGTAAC
1 TATCCAGTAACAGTCAATTATTCAGTAAAGTCAATTATTCAGTAACAATTAAGTTATTCAGTAAC
*
76259762 AGTCAT
66 AGTCAA
* * * * * * *
76259768 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAG-AA-TATTCAGTTATTCAGTA
1 T-ATCCAGTAACAGTCAATTATTCAGTAAAG-TCAATTATTCAGTAACAATTAAGTTATTCAGTA
76259831 ACAGTCTAA
64 ACAGTC-AA
* *
76259840 TATCCAGTAACAGTCAATTATCCAGTAACAGTTAATTATTCA
1 TATCCAGTAACAGTCAATTATTCAGTAA-AGTCAATTATTCA
76259882 ATAATAATCA
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
71 54 0.59
72 28 0.30
73 10 0.11
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (71 bp):
TATCCAGTAACAGTCAATTATTCAGTAAAGTCAATTATTCAGTAACAATTAAGTTATTCAGTAAC
AGTCAA
Found at i:76259894 original size:18 final size:18
Alignment explanation
Indices: 76259696--76259897 Score: 160
Period size: 18 Copynumber: 11.3 Consensus size: 18
76259686 AATTGATCGG
* *
76259696 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
*
76259714 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAATCAA
* *
76259731 GTATTCAGTAACAATTAA
1 TTATTCAGTAACAATCAA
*
76259749 GTTATTCAGTAACAGTC-A
1 -TTATTCAGTAACAATCAA
* *
76259767 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAA
**
76259786 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAA
* * *
76259804 TTATTCAG-AATATTCAG
1 TTATTCAGTAACAATCAA
*
76259821 TTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATC-AA
* *
76259840 -TATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
* * *
76259857 TTATCCAGTAACAGTTAA
1 TTATTCAGTAACAATCAA
* *
76259875 TTATTCAATAATAATCAA
1 TTATTCAGTAACAATCAA
76259893 TTATT
1 TTATT
76259898 TTATACCTTT
Statistics
Matches: 148, Mismatches: 29, Indels: 14
0.77 0.15 0.07
Matches are distributed among these distances:
17 32 0.22
18 100 0.68
19 16 0.11
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:76265238 original size:152 final size:152
Alignment explanation
Indices: 76264930--76265228 Score: 409
Period size: 152 Copynumber: 2.0 Consensus size: 152
76264920 GAGCGTTACA
* * * *
76264930 TTATTCCATTTTTTTATTTTATTTCCAAAACGAGTATTAAAATTAAATAAAATCTATTTCGAGAT
1 TTATTCAATTTTTTTATTTTATTACCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGAT
** * * *
76264995 TTATTCCCGCCGTTCAGCAGATTTTATTCCATTTTGATTTTGTTCCCAAAACGAGTATTAAAATT
66 TTATTCCCGCCGTTCAAAAGATTTTATTACATTTTGATTTTATTCCCAAAACGAGTATAAAAATT
*
76265060 AAATAAAATTTGTTTCAGAATT
131 AAATAAAATATGTTTCAGAATT
* * * * *
76265082 TTATTCAATTTTTTTATTTTGTTACCAAAATGAATATTAAAATCAAATAAAATTTGTTTCGGGAT
1 TTATTCAATTTTTTTATTTTATTACCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGAT
* * * * *
76265147 TTATTTCTGCCGTTTAAAAGATTTTATTACATTCTTTATTTTATTTCCAAAACGAGTATAAAAAT
66 TTATTCCCGCCGTTCAAAAGATTTTATTACATT-TTGATTTTATTCCCAAAACGAGTATAAAAAT
76265212 TAAATAAAATATGTTTC
130 TAAATAAAATATGTTTC
76265229 GAGATTTATT
Statistics
Matches: 126, Mismatches: 20, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
152 83 0.66
153 43 0.34
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (152 bp):
TTATTCAATTTTTTTATTTTATTACCAAAACGAATATTAAAATCAAATAAAATCTATTTCGAGAT
TTATTCCCGCCGTTCAAAAGATTTTATTACATTTTGATTTTATTCCCAAAACGAGTATAAAAATT
AAATAAAATATGTTTCAGAATT
Found at i:76265240 original size:87 final size:87
Alignment explanation
Indices: 76265094--76265348 Score: 316
Period size: 87 Copynumber: 2.9 Consensus size: 87
76265084 ATTCAATTTT
* * * * *
76265094 TTTATTTTGTTACCAAAATGAATATTAAAATCAAATAAAATTTGTTTCGGGATTTATTTCTGCCG
1 TTTATTTTGTTACCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGAGATTTATTTCTGCCG
76265159 TTTAAAAGATTTTATTACATTC
66 TTTAAAAGATTTTATTACATTC
* * * * *
76265181 TTTATTTTATTTCCAAAACGAGTATAAAAATTAAATAAAATATGTTTCGAGATTTATTTCCGCTG
1 TTTATTTTGTTACCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGAGATTTATTTCTGCCG
* * * *
76265246 TTCAACAGAATTTATTTCATTC
66 TTTAAAAGATTTTATTACATTC
* * *
76265268 TTGATTTTGTTACC-AAACGAGAAATTAAAATTAAATAAAATCTGTTTCGAGATTTATTTCAT-C
1 TTTATTTTGTTACCAAAACGAG-TATTAAAATTAAATAAAATATGTTTCGAGATTTATTTC-TGC
*
76265331 CATTTAAAAGATTTTATT
64 CGTTTAAAAGATTTTATT
76265349 CAATTTTAAT
Statistics
Matches: 140, Mismatches: 26, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
86 7 0.05
87 133 0.95
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.43
Consensus pattern (87 bp):
TTTATTTTGTTACCAAAACGAGTATTAAAATTAAATAAAATATGTTTCGAGATTTATTTCTGCCG
TTTAAAAGATTTTATTACATTC
Found at i:76265528 original size:83 final size:81
Alignment explanation
Indices: 76265289--76265530 Score: 260
Period size: 83 Copynumber: 3.0 Consensus size: 81
76265279 ACCAAACGAG
* * *
76265289 AAATTAAAATTAAA-TAA-AATCTGTTTCGAGATTTATTTCATCCAT-TTAAAAGATTTTATTCA
1 AAATTAAAATTAAATTAATAATCTGTTTCGAGATTTATTCCCTCC-TGTTAACAGATTTTATTCA
* * *
76265351 ATTTTAATTTGGTTTCC
65 ATTTTGATTTTGTTCCC
* ** * *
76265368 AAATTAGAATTAAATTTTCTAATCTATTTCGAGATTTATTCCCTCC-GTTTAACAAATTTTATTC
1 AAATTAAAATTAAA-TTAATAATCTGTTTCGAGATTTATTCCCTCCTG-TTAACAGATTTTATTC
*
76265432 AATTTTGTTTTTTGTTCCC
64 AATTTTG-ATTTTGTTCCC
76265451 AAATTAAAATTAAATTAAATAATCTGTTTCGAGATTTA-TCCCTGCCTGTTAACAGATTTTATTT
1 AAATTAAAATTAAATT-AATAATCTGTTTCGAGATTTATTCCCT-CCTGTTAACAGATTTTA-TT
* *
76265515 CGATCTTGATTTTGTT
63 CAATTTTGATTTTGTT
76265531 TATAAACGAA
Statistics
Matches: 133, Mismatches: 20, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
79 13 0.10
81 1 0.01
82 50 0.38
83 60 0.45
84 9 0.07
ACGTcount: A:0.32, C:0.13, G:0.09, T:0.47
Consensus pattern (81 bp):
AAATTAAAATTAAATTAATAATCTGTTTCGAGATTTATTCCCTCCTGTTAACAGATTTTATTCAA
TTTTGATTTTGTTCCC
Found at i:76268562 original size:87 final size:87
Alignment explanation
Indices: 76268467--76269282 Score: 683
Period size: 87 Copynumber: 9.5 Consensus size: 87
76268457 ATTTAATTGG
* *
76268467 ATTTTATTTCCAAACGAGAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCCGTTC
1 ATTTTATTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTC
*
76268532 AACAAATTTTATTTCATTTTTT
66 AACAGATTTTATTTCATTTTTT
* * * * *
76268554 ATTTTATTTCCAAAC-ATGAAATTAAAGTTAAATAGAATTTGTTTCGGGATTTATTCCCGTCGTT
1 ATTTTATTTCCAAACGA-GAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTT
* *
76268618 CAACGGATTTTATTACATTTTTT
65 CAACAGATTTTATTTCATTTTTT
* * * * * *
76268641 ATTTTATTTCCAAAC-AGGAAATTAAAGTTAAATAGAATCTGTTTCAGGAGTTATT-ATCGTCGT
1 ATTTTATTTCCAAACGA-GAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCT-GCCGT
* * *
76268704 TCAACGGATTTTATTACTTTTTTT
64 TCAACAGATTTTATTTCATTTTTT
* * * * * *
76268728 ATTTTATTTCTAAACGAAAAATTAAAGTTAAATAAAATCCGTTTCGGGATTTATTCCTGCTGTTT
1 ATTTTATTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTC
*
76268793 AACGGATTTTA-TTCTATTTTTT
66 AACAGATTTTATTTC-ATTTTTT
* *
76268815 ATTTTATTTCAAAACGAGTAA-TAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTGT
1 ATTTTATTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGT-T
* *
76268879 -AATAGATTTTATTCCATTTTTTT
65 CAACAGATTTTATTTCA-TTTTTT
* * * *
76268902 ATTTTGTTTCCAAAACAAG-TATTAAAATAAAATAAAA-CTTGTTTCGGGATTTATTTCC-GCCG
1 ATTTTATTTCC-AAACGAGAAATTAAAATTAAATAAAATC-TGTTTCGGGATTTA-TTCCTGCCG
* ** *
76268964 CTCAATGGATATTA-TTCTATTTTTTT
63 TTCAACAGATTTTATTTC-A-TTTTTT
* * *
76268990 ATTTTATTTCCGAAACAAG-TATTAAAATTAAATAAAATATGTTTCGGGATTTATT-CT--CG--
1 ATTTTATTTCC-AAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTT
76269049 C--C-G-TTTTA-TTC-TATTTTT
65 CAACAGATTTTATTTCAT-TTTTT
* * * * ** * *
76269067 ATTTTGTTTTCAAAACGA-ATATTAAAATTAAATAAAATCTATTTTAGCATTTATT-TTCGCCGT
1 ATTTT-ATTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCT-GCCGT
* * * *
76269130 TTAATAGATTTTATTCCGTTTTTT
64 TCAACAGATTTTATTTCATTTTTT
* * * * * **
76269154 ATTTTATTCCCAAAACGAG-TATTAAAATTATATTAAATCTGTTTCGGGATTTATTCCCGTTGTT
1 ATTTTATTTCC-AAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTT
* * *
76269218 CAACAAATTTTATTTCATTCTTA
65 CAACAGATTTTATTTCATTTTTT
* * * * * * *
76269241 ATCTTGTTGCGAAACTAGAAATTAAAATTGAATAAAACCTGT
1 ATTTTATTTCCAAACGAGAAATTAAAATTAAATAAAATCTGT
76269283 AACAAATTTT
Statistics
Matches: 602, Mismatches: 93, Indels: 68
0.79 0.12 0.09
Matches are distributed among these distances:
76 1 0.00
77 47 0.08
78 4 0.01
79 7 0.01
80 3 0.00
83 1 0.00
85 3 0.00
86 66 0.11
87 360 0.60
88 106 0.18
89 4 0.01
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.44
Consensus pattern (87 bp):
ATTTTATTTCCAAACGAGAAATTAAAATTAAATAAAATCTGTTTCGGGATTTATTCCTGCCGTTC
AACAGATTTTATTTCATTTTTT
Done.