Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 243 of 259
Found at i:76269090 original size:77 final size:78
Alignment explanation
Indices: 76268975--76269131 Score: 201
Period size: 77 Copynumber: 2.0 Consensus size: 78
76268965 TCAATGGATA
* * * *
76268975 TTATTCTATTTTTTTATTTTATTTCCGAAACAAGTATTAAAATTAAATAAAATATGTTTCGGGAT
1 TTATTCTA-TTTTTTATTTTATTTCCAAAACAAGTATTAAAATTAAATAAAATATATTTCAGCAT
76269040 TTATTCTCGCCGTT
65 TTATTCTCGCCGTT
* * * *
76269054 TTATTCTA-TTTTTATTTTGTTTTCAAAACGAA-TATTAAAATTAAATAAAATCTATTTTAGCAT
1 TTATTCTATTTTTTATTTTATTTCCAAAAC-AAGTATTAAAATTAAATAAAATATATTTCAGCAT
*
76269117 TTATTTTCGCCGTT
65 TTATTCTCGCCGTT
76269131 T
1 T
76269132 AATAGATTTT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
77 58 0.85
78 2 0.03
79 8 0.12
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (78 bp):
TTATTCTATTTTTTATTTTATTTCCAAAACAAGTATTAAAATTAAATAAAATATATTTCAGCATT
TATTCTCGCCGTT
Found at i:76269516 original size:83 final size:80
Alignment explanation
Indices: 76269413--76269784 Score: 270
Period size: 83 Copynumber: 4.6 Consensus size: 80
76269403 AATTAAATTG
* * * * *
76269413 AATAATCTGTTTCGAAATTTATTCCAACCAGCTAACATATTTTACTCGATCTTGATTTTGTTTCT
1 AATAATCTGTTTCGAGATTTATTCCAGCC-GCTAACAGATTTTATTCGATCTTGATTTTGTTTCC
*
76269478 AAACGAACCCTTAATCA
65 AAACGAA-ACTTAATCA
* * * * *
76269495 AATAATTCTGTTTCGGGATTTATTCCCGCTGCTTAACATATTTTA-T---T-TTAATTTTGTTTC
1 AATAA-TCTGTTTCGAGATTTATTCCAGCCGC-TAACAGATTTTATTCGATCTTGATTTTGTTTC
** * **
76269555 CAAATTAGAACTAAATTT
64 CAAACGA-AACTTAATCA
** * * * * * * * *
76269573 TGTAATCTGTTTCTAGATTTATTCCCGTCGTTTAACAGATTTTATTTGATTTTGTTTTTTGTTCC
1 AATAATCTGTTTCGAGATTTATTCCAGCCG-CTAACAGATTTTATTCGATCTTG-ATTTTGTTTC
** * *
76269638 CAAATTAAAATTAAATTA
64 CAAACGAAACTT-AATCA
* *
76269656 AATAATCTGTTTC-AGGATTTATTCCAGCCGGTTAACAGATTTCATTCGATCTTGATTTTGTTTC
1 AATAATCTGTTTCGA-GATTTATTCCAGCC-GCTAACAGATTTTATTCGATCTTGATTTTGTTTC
*
76269720 TAAACGAACACTTAATCA
64 CAAACGAA-ACTTAATCA
* *
76269738 AATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATT
1 AATAA-TCTGTTTCGAGATTTATTCCAGCCG-CTAACAGATTTTATT
76269785 TTAATTTTTT
Statistics
Matches: 230, Mismatches: 43, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
77 32 0.14
78 25 0.11
79 2 0.01
81 1 0.00
82 37 0.16
83 131 0.57
84 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.11, T:0.44
Consensus pattern (80 bp):
AATAATCTGTTTCGAGATTTATTCCAGCCGCTAACAGATTTTATTCGATCTTGATTTTGTTTCCA
AACGAAACTTAATCA
Found at i:76269736 original size:243 final size:241
Alignment explanation
Indices: 76269298--76269802 Score: 769
Period size: 243 Copynumber: 2.1 Consensus size: 241
76269288 ATTTTATTCA
* * **
76269298 ATTTTTATTTGGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCTTGTCGT
1 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCCCGTCGT
* *
76269363 TTAATAGATTTTATTTGATTTTTTTTTGTTCCAAAATTAAAATTAAATTGAATAATCTGTTTCGA
66 TTAACAGATTTTATTTGATTTTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTCGA
* * *
76269428 AATTTATTCCAACCAGCTAACATATTTTACTCGATCTTGATTTTGTTTCTAAACGAACCCTTAAT
131 AATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTAAT
* * *
76269493 CAAATAATTCTGTTTCGGGATTTATTCCCGCTGCTTAACATATTTT
196 CAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* *
76269539 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATCTGTTTCTAGATTTATTCCCGTCGT
1 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCCCGTCGT
*
76269604 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCCAAATTAAAATTAAATTAAATAATCTGTTTC
66 TTAACAGATTTTATTTGA-TTT-TTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
* * * * *
76269669 -AGGATTTATTCCAGCCGGTTAACAGATTTCATTCGATCTTGATTTTGTTTCTAAACGAACACTT
129 GA-AATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTT
*
76269733 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTT
193 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* *
76269782 ATTTTAATTTTTTTTACAAAT
1 ATTTTAATTTTGTTTCCAAAT
76269803 AAGATTTAAT
Statistics
Matches: 238, Mismatches: 23, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
241 76 0.32
242 4 0.02
243 158 0.66
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.47
Consensus pattern (241 bp):
ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCCCGTCGT
TTAACAGATTTTATTTGATTTTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTCGA
AATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTAAT
CAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
Found at i:76269823 original size:77 final size:77
Alignment explanation
Indices: 76269487--76269856 Score: 264
Period size: 77 Copynumber: 4.6 Consensus size: 77
76269477 TAAACGAACC
* * * * * *
76269487 CTTAATCAAATAATTCTGTTTCGGGATTTATTCCCGCTGCTTAACATATTTTATTTTAATTTTGT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
* *
76269552 TTCCAAATTAGAA
66 TTACAAATAAG-A
* *** * * **
76269565 CTAAATTTTGTAA-TCTGTTTCTAGATTTATTCCCGTCGTTTAACAGATTTTATTTGATTTTGTT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTA--T--TTTAATT
*
76269629 TTTTGTTCCCAAATTAA-A
62 TTTT-TT-ACAAA-TAAGA
* * * * *
76269647 ATTAAATTAAATAA-TCTGTTTC-AGGATTTATTCCAGCCGGTTAACAGATTTCATTCGATCTTG
1 CTT-AATTAAATAATTCTGTTTCGA-GATTTATTCCCGCCGTTTAACAGA-TT--TT--ATTTTA
** *
76269710 ATTTTGTTTCTA-AACGAACA
59 ATTTT-TTT-TACAAATAAGA
*
76269730 CTTAATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
76269795 TTACAAATAAGA
66 TTACAAATAAGA
* * * ** *
76269807 TTTAATTAAATAATTCTGTTTCGGGATTTAATCTTGCCGTTCAACAGATT
1 CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATT
76269857 GATTTTGATT
Statistics
Matches: 227, Mismatches: 45, Indels: 41
0.73 0.14 0.13
Matches are distributed among these distances:
76 2 0.01
77 84 0.37
78 17 0.07
79 1 0.00
80 2 0.01
81 8 0.04
82 18 0.08
83 76 0.33
84 12 0.05
85 3 0.01
86 3 0.01
88 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.11, T:0.45
Consensus pattern (77 bp):
CTTAATTAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTTATTTTAATTTTTT
TTACAAATAAGA
Found at i:76269855 original size:243 final size:243
Alignment explanation
Indices: 76269298--76269874 Score: 732
Period size: 243 Copynumber: 2.4 Consensus size: 243
76269288 ATTTTATTCA
* * * * *** *
76269298 ATTTTTATTTGGTTTCCAAATTAGAACTAAATTTTGTAATATGTTTCGAGATTTATTCTTGTCGT
1 ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAATCTGTTTCGAGATTTATTCTTGTCGT
* *
76269363 TTAATAGATTTTATTTGA-TTT-TTTTTTGTTCCAAAATTAAAATTAAATTGAATAATCTGTTTC
66 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
* * *
76269426 GAAATTTATTCCAACCAGCTAACATATTTTACTCGATCTTGATTTTGTTTCTAAACGAACCCTTA
131 GAAATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTA
* * *
76269491 ATCAAATAATTCTGTTTCGGGATTTATTCCCGCTGCTTAACATATTTT
196 ATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* * *** * **
76269539 ATTTTAATTTTGTTTCCAAATTAGAACTAAATTTTGTAATCTGTTTCTAGATTTATTCCCGTCGT
1 ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAATCTGTTTCGAGATTTATTCTTGTCGT
*
76269604 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCCAAATTAAAATTAAATTAAATAATCTGTTTC
66 TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
* * * * *
76269669 -AGGATTTATTCCAGCCGGTTAACAGATTTCATTCGATCTTGATTTTGTTTCTAAACGAACACTT
131 GA-AATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTT
*
76269733 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGTTTAACAGATTTT
195 AATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
* * * * * *
76269782 ATTTTAATTTTTTTTACAAATAAG-ATTTAATTAAATAATTCTGTTTCGGGATTTAATCTTGCCG
1 ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAA-TCTGTTTCGAGATTTATTCTTGTCG
* * *
76269846 TTCAACAGA-TTGATTTTGATTTTGATTTT
65 TTTAACAGATTTTA-TTTGATTTTGTTTTT
76269875 GATTTTGATT
Statistics
Matches: 293, Mismatches: 38, Indels: 8
0.86 0.11 0.02
Matches are distributed among these distances:
241 76 0.26
242 16 0.05
243 201 0.69
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (243 bp):
ATTTTAATTTTGTTTACAAATAAGAACTAAATTAAATAATCTGTTTCGAGATTTATTCTTGTCGT
TTAACAGATTTTATTTGATTTTGTTTTTTGTTCCAAAATTAAAATTAAATTAAATAATCTGTTTC
GAAATTTATTCCAACCAGCTAACAGATTTCACTCGATCTTGATTTTGTTTCTAAACGAACACTTA
ATCAAATAATTCTGTTTCGAGATTTATTCCCGCCGCTTAACAGATTTT
Found at i:76269866 original size:6 final size:6
Alignment explanation
Indices: 76269855--76269887 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
76269845 GTTCAACAGA
76269855 TTGATT TTGATT TTGATT TTGATT TTGATT TTG
1 TTGATT TTGATT TTGATT TTGATT TTGATT TTG
76269888 CTCCAGAACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.15, C:0.00, G:0.18, T:0.67
Consensus pattern (6 bp):
TTGATT
Found at i:76269976 original size:12 final size:13
Alignment explanation
Indices: 76269959--76269988 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
76269949 TTTTCTATTT
76269959 ATTGTGGCATT-A
1 ATTGTGGCATTAA
76269971 ATTGTGGCATTAA
1 ATTGTGGCATTAA
76269984 ATTGT
1 ATTGT
76269989 AACTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.27, C:0.07, G:0.23, T:0.43
Consensus pattern (13 bp):
ATTGTGGCATTAA
Found at i:76272065 original size:20 final size:19
Alignment explanation
Indices: 76272040--76272089 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
76272030 ACATATATCC
*
76272040 TAATTTTATTTGATTCTAAT
1 TAATTTGATTTGATT-TAAT
*
76272060 TAATTTGGTTTGATTTAAT
1 TAATTTGATTTGATTTAAT
* *
76272079 CAAATTGATTT
1 TAATTTGATTT
76272090 AATTGTCCCC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.30, C:0.04, G:0.10, T:0.56
Consensus pattern (19 bp):
TAATTTGATTTGATTTAAT
Found at i:76272772 original size:87 final size:85
Alignment explanation
Indices: 76272667--76272894 Score: 267
Period size: 85 Copynumber: 2.6 Consensus size: 85
76272657 ATTTTATTTG
* * *
76272667 AAAATATAAATAAAATCCGTTTTGGGATTTATTCCCACCGTTTAACAAATTTTATTATATTTTGG
1 AAAAT-TAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACAAATTTTATTATATTTT-G
*
76272732 ATTTTATTTCCAAACGAGAAATT
64 ATTTTATTTCAAAACGAG-AATT
* ** * ** * **
76272755 AAAGTTAAATAAAATCCGTTTCGAAATTTTTTCCCGCTGTTTAACGTATTTTATTCTATTTTTCT
1 AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACAAATTTTATTATATTTTGAT
*
76272820 TTTATTTCAAAACGAGTATT
66 TTTATTTCAAAACGAGAATT
** * *
76272840 AAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCTGTTTAACAGATTCTATT
1 AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACAAATTTTATT
76272895 CCATTTTTTT
Statistics
Matches: 117, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
85 49 0.42
86 16 0.14
87 48 0.41
88 4 0.03
ACGTcount: A:0.33, C:0.14, G:0.10, T:0.43
Consensus pattern (85 bp):
AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACAAATTTTATTATATTTTGAT
TTTATTTCAAAACGAGAATT
Found at i:76272874 original size:85 final size:85
Alignment explanation
Indices: 76272667--76272916 Score: 268
Period size: 87 Copynumber: 2.9 Consensus size: 85
76272657 ATTTTATTTG
* * * * * *
76272667 AAAATATAAATAAAATCCGTTTTGGGATTTATTCCCACCGTTTAACAAATTTTATTATATTTTGG
1 AAAAT-TAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAAC-GATTTTATTCTATTTT-T
*
76272732 ATTTTATTTCCAAACGAGAAATT
63 ATTTTATTTCAAAACGAGAAATT
* ** * *
76272755 AAAGTTAAATAAAATCCGTTTCGAAATTTTTTCCCGCTGTTTAACGTATTTTATTCTATTTTTCT
1 AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACG-ATTTTATTCTATTTTTAT
*
76272820 TTTATTTCAAAACGAG-TATT
65 TTTATTTCAAAACGAGAAATT
** * *
76272840 AAAATTAAATAAAATCTATTTCGGGATTTATTCCCGCTGTTTAACAGATTCTATTCCATTTTTTT
1 AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAAC-GATTTTATT-C-TATTTTT
*
76272905 ATTTTGTTTCAA
63 ATTTTATTTCAA
76272917 GATTTATTCC
Statistics
Matches: 135, Mismatches: 23, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
85 49 0.36
86 18 0.13
87 64 0.47
88 4 0.03
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.45
Consensus pattern (85 bp):
AAAATTAAATAAAATCCGTTTCGGGATTTATTCCCGCTGTTTAACGATTTTATTCTATTTTTATT
TTATTTCAAAACGAGAAATT
Found at i:76273102 original size:82 final size:80
Alignment explanation
Indices: 76272975--76273256 Score: 250
Period size: 79 Copynumber: 3.5 Consensus size: 80
76272965 GTCAAACGAG
* * *
76272975 AAATTAAAATTAAA-T-AA-AATATGTTTCTAGATTTATTCTTACCGTTTAATAGATTTTATTCA
1 AAATTAAAATTAAATTGAATAATCTGTTTCGAGATTTATTCTTACCGTTTAACAGATTTTATTCA
76273037 ATTTTAATTTGGTTTCC
66 ATTTT-ATTT-GTTTCC
* *** * * * **
76273054 AAATTAGAATTAAATTTTTTAATTTGTTTCGAGATTTATTTTTTCCGTTTAACAGATTTTATTTG
1 AAATTAAAATTAAATTGAATAATCTGTTTCGAGATTTATTCTTACCGTTTAACAGATTTTATTCA
*
76273119 ATTTT-TTTGTATCC
66 ATTTTATTTGTTTCC
* * * * *
76273133 AAATTAAAATTAAATTGAATAATCTATTTTGGGATTTATTCTTGCCGGTTAACAGATTTTATTCA
1 AAATTAAAATTAAATTGAATAATCTGTTTCGAGATTTATTCTTACCGTTTAACAGATTTTATTCA
* *
76273198 ATCTTGATTTTGTTTCT
66 AT-TTTA-TTTGTTTCC
* * ** *
76273215 AAATGAAGACTT-AATCAAATAATTTTGTTTCGAGATTTATTC
1 AAATTAA-AATTAAATTGAATAA-TCTGTTTCGAGATTTATTC
76273257 CCGCTACTTA
Statistics
Matches: 160, Mismatches: 35, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
79 72 0.45
80 6 0.04
82 64 0.40
83 18 0.11
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (80 bp):
AAATTAAAATTAAATTGAATAATCTGTTTCGAGATTTATTCTTACCGTTTAACAGATTTTATTCA
ATTTTATTTGTTTCC
Found at i:76279984 original size:21 final size:22
Alignment explanation
Indices: 76279955--76280001 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
76279945 CAGAAGGAGT
*
76279955 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
76279977 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
76279998 GAGT
1 GAGT
76280002 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:76302080 original size:18 final size:18
Alignment explanation
Indices: 76302057--76302185 Score: 213
Period size: 18 Copynumber: 7.2 Consensus size: 18
76302047 CCCAACTACT
*
76302057 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
76302075 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
76302093 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
**
76302111 GTATACGTGAATAGTGTC
1 GTATACGTGAATAGTACC
76302129 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
76302147 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
76302165 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
76302183 GTA
1 GTA
76302186 AACGGTCGTA
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 102 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:76304148 original size:30 final size:30
Alignment explanation
Indices: 76304105--76304170 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
76304095 AAGCCTTTTC
* *
76304105 CCACATGGACTGAGCACATGACCATGTGAG
1 CCACACGGGCTGAGCACATGACCATGTGAG
* * *
76304135 CTACACGGGCTGAGCACATGCCCGTGTGAG
1 CCACACGGGCTGAGCACATGACCATGTGAG
76304165 CCACAC
1 CCACAC
76304171 AAACTGGCCA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.32, G:0.27, T:0.15
Consensus pattern (30 bp):
CCACACGGGCTGAGCACATGACCATGTGAG
Found at i:76306191 original size:21 final size:21
Alignment explanation
Indices: 76306157--76306211 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
76306147 TATAGTAGCG
* *
76306157 TATAT-TTTATTATATATGTA
1 TATATATTTAATATATATATA
* *
76306177 TATGTATTTAATATATTTATA
1 TATATATTTAATATATATATA
76306198 TATATATTT-ATATA
1 TATATATTTAATATA
76306212 GCATCATTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 9 0.31
21 20 0.69
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (21 bp):
TATATATTTAATATATATATA
Found at i:76306202 original size:10 final size:10
Alignment explanation
Indices: 76306157--76306211 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
76306147 TATAGTAGCG
76306157 TATAT-TTTA
1 TATATATTTA
*
76306166 TTATATATGTA
1 -TATATATTTA
*
76306177 TATGTATTTA
1 TATATATTTA
76306187 -ATATATTTA
1 TATATATTTA
76306196 TATATATATT-
1 TATATAT-TTA
76306206 TATATA
1 TATATA
76306212 GCATCATTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
9 8 0.21
10 25 0.66
11 5 0.13
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (10 bp):
TATATATTTA
Found at i:76319213 original size:84 final size:87
Alignment explanation
Indices: 76319101--76319284 Score: 243
Period size: 84 Copynumber: 2.1 Consensus size: 87
76319091 ATATTTTTAT
* *
76319101 TTCTGTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTG-AA-GTA
1 TTCTGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATGCAAGGTA
*
76319164 TTTTCAATTTCTGTT-TCTC-AA
66 TTTTCAAATTCTGTTGT-TCAAA
** * *
76319185 TTCATGTTTTTAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACATGCCAAGG
1 TTC-TGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATG-CAAGG
76319249 TATTTTCAAATTCTGTTGTTCAAA
64 TATTTTCAAATTCTGTTGTTCAAA
76319273 TTCTGTTTTTAA
1 TTCTGTTTTTAA
76319285 TTTCTACTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
84 41 0.47
85 10 0.11
86 2 0.02
87 28 0.32
88 6 0.07
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (87 bp):
TTCTGTTTTTAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATGCAAGGTA
TTTTCAAATTCTGTTGTTCAAA
Found at i:76319272 original size:14 final size:14
Alignment explanation
Indices: 76319253--76319279 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76319243 CCAAGGTATT
76319253 TTCAAATTCTGTTG
1 TTCAAATTCTGTTG
76319267 TTCAAATTCTGTT
1 TTCAAATTCTGTT
76319280 TTTAATTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTG
Found at i:76319412 original size:87 final size:88
Alignment explanation
Indices: 76319267--76319688 Score: 477
Period size: 87 Copynumber: 4.8 Consensus size: 88
76319257 AATTCTGTTG
* *
76319267 TTCAAATTCTGTTTTT-AATTTCTAC-TTTTCCAAAATCAACTCATATTGCGA-AGGGTGAGTTG
1 TTCAATTTCTGTTTTTCAATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGA-GGTGAGTTG
* *
76319329 AGTCTCAGGACACACTGAGGTAAT
65 AGCCTCAGGACACACTGAGGTATT
* * *
76319353 TTCAA-TTCTTGTCTGT-AATTTCTACTTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTG
1 TTCAATTTC-TGTTTTTCAATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTG
* * **
76319416 AGCCTTAGGATATGCTGAGGTATT
65 AGCCTCAGGACACACTGAGGTATT
*
76319440 TTCAATTTCTGTTTTTCAATTTATA-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTCAATTTCTGTTTTTCAATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
76319504 GCCTC-GGCTCACATGCTGAGGTACT
66 GCCTCAGG-ACACA--CTGAGGTATT
* * * *
76319529 TTCAGTTTCTGTTTTTCAAATTC--CTGTTTGTCAAAAATCAACCCATATTGCGAGAAGTGAGTT
1 TTCAATTTCTGTTTTTCAATTTCTACT-TTT-TCAAAAATCAACTCATATTGCGAGAGGTGAGTT
*
76319592 GAGCCTCAGGACACGCTGAGGTATT
64 GAGCCTCAGGACACACTGAGGTATT
* * * *
76319617 TTCAATTTCTTTTTTTTTTAAATTTATA-TTTTTCAAAAATCAACTCCTATTGCGAGAGGTGAGT
1 TTCAATTTC---TGTTTTTCAATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGT
76319681 TGAGCCTC
63 TGAGCCTC
76319689 GGGTCACATG
Statistics
Matches: 283, Mismatches: 36, Indels: 30
0.81 0.10 0.09
Matches are distributed among these distances:
85 3 0.01
86 21 0.07
87 104 0.37
88 29 0.10
89 32 0.11
90 78 0.28
91 15 0.05
92 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (88 bp):
TTCAATTTCTGTTTTTCAATTTCTACTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
GCCTCAGGACACACTGAGGTATT
Found at i:76319457 original size:14 final size:14
Alignment explanation
Indices: 76319438--76319472 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
76319428 TGCTGAGGTA
* *
76319438 TTTTCAATTTCTGT
1 TTTTCAATTTATAT
76319452 TTTTCAATTTATAT
1 TTTTCAATTTATAT
76319466 TTTTCAA
1 TTTTCAA
76319473 AAATCAACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.23, C:0.11, G:0.03, T:0.63
Consensus pattern (14 bp):
TTTTCAATTTATAT
Found at i:76319690 original size:180 final size:173
Alignment explanation
Indices: 76319267--76319706 Score: 532
Period size: 180 Copynumber: 2.5 Consensus size: 173
76319257 AATTCTGTTG
* * * *
76319267 TTCAAATTCTGTTTTTAATTTCTACTTTTCCAAAATCAACTCATATTGCGA-AGGGTGAGTTGAG
1 TTCAATTTCTGTTTTTAATTTATATTTTTCAAAAATCAACTCATATTGCGAGA-GGTGAGTTGAG
* * *
76319331 TCTCAGGACACA--CTGAGGTAATTTCAATTCTTGTCTGTAATTTCTACTTTTTCAAAAATCAAC
65 CCTC-GGTCACATGCTGAGGTAATTTCAATTCTTGTCTGTAAATTC-ACTTTTTCAAAAATCAAC
* * * * * *
76319394 TCATATTGTGAGAGGTGAGTTGAGCCTTAGGATATGCTGAGGTATT
128 CCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
76319440 TTCAATTTCTGTTTTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTCAATTTCTGTTTTT-AATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * *
76319505 CCTCGGCTCACATGCTGAGGTACTTTCAGTT-TCTGTTTTTCAAATTC-CTGTTTGTCAAAAATC
65 CCTCGG-TCACATGCTGAGGTAATTTCAATTCT-TGTCTGT-AAATTCACT-TTT-TCAAAAATC
76319568 AACCCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
125 AACCCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
* *
76319617 TTCAATTTCTTTTTTTTTTAAATTTATATTTTTCAAAAATCAACTCCTATTGCGAGAGGTGAGTT
1 TTCAATTTC---TGTTTTT-AATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTT
76319682 GAGCCTCGGGTCACATG-TCGAGGTA
62 GAGCCTC-GGTCACATGCT-GAGGTA
76319707 TTTTTAAAAT
Statistics
Matches: 233, Mismatches: 20, Indels: 21
0.85 0.07 0.08
Matches are distributed among these distances:
173 17 0.07
174 50 0.21
175 4 0.02
176 23 0.10
177 66 0.28
179 1 0.00
180 70 0.30
181 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.38
Consensus pattern (173 bp):
TTCAATTTCTGTTTTTAATTTATATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
CTCGGTCACATGCTGAGGTAATTTCAATTCTTGTCTGTAAATTCACTTTTTCAAAAATCAACCCA
TATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAGGTATT
Found at i:76321765 original size:6 final size:6
Alignment explanation
Indices: 76321754--76321778 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
76321744 TTTTATTATG
76321754 TATGTA TATGTA TATGTA TATGTA T
1 TATGTA TATGTA TATGTA TATGTA T
76321779 TTAATATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (6 bp):
TATGTA
Found at i:76327368 original size:77 final size:77
Alignment explanation
Indices: 76327241--76327394 Score: 308
Period size: 77 Copynumber: 2.0 Consensus size: 77
76327231 ACGACCACCA
76327241 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
1 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
76327306 GACATGGACTCG
66 GACATGGACTCG
76327318 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
1 TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
76327383 GACATGGACTCG
66 GACATGGACTCG
76327395 AAGAACAACA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 77 1.00
ACGTcount: A:0.14, C:0.21, G:0.32, T:0.32
Consensus pattern (77 bp):
TGGCTCCTTTGTCATGTGCTAGCTTGCTTAGCTCCGGAATGTTGGCCACTGTGAGTGTGGGGTTA
GACATGGACTCG
Found at i:76328766 original size:21 final size:21
Alignment explanation
Indices: 76328721--76328765 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
76328711 TTATATGATC
76328721 AAAATTAATTAATATGTAAAA
1 AAAATTAATTAATATGTAAAA
76328742 AAAATTAATTGAAT-T-TAAAA
1 AAAATTAATT-AATATGTAAAA
76328762 AAAA
1 AAAA
76328766 AATCAACCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.39
21 11 0.48
22 3 0.13
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (21 bp):
AAAATTAATTAATATGTAAAA
Found at i:76329319 original size:26 final size:28
Alignment explanation
Indices: 76329273--76329326 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 28
76329263 TAAATATCTC
* *
76329273 TTTTTTTTAATACATCGTTTTGATTTTA
1 TTTTTTTTAATAAATCGTTTTAATTTTA
76329301 TTTTTTTT-ATAAATC-TTTTAATTTTA
1 TTTTTTTTAATAAATCGTTTTAATTTTA
76329327 AAATCTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.42
27 6 0.25
28 8 0.33
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.67
Consensus pattern (28 bp):
TTTTTTTTAATAAATCGTTTTAATTTTA
Found at i:76329472 original size:15 final size:17
Alignment explanation
Indices: 76329447--76329480 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
76329437 TAACTTTCAT
76329447 TTTTATTTTTATAA-AA
1 TTTTATTTTTATAATAA
76329463 TTTT-TTTTTATAATAA
1 TTTTATTTTTATAATAA
76329479 TT
1 TT
76329481 AATAAAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTATTTTTATAATAA
Found at i:76329750 original size:16 final size:16
Alignment explanation
Indices: 76329729--76329759 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76329719 ATTCTTAAAT
76329729 TTAAATTAAATTATTA
1 TTAAATTAAATTATTA
*
76329745 TTAAATTTAATTATT
1 TTAAATTAAATTATT
76329760 TTATTGCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TTAAATTAAATTATTA
Found at i:76333091 original size:31 final size:31
Alignment explanation
Indices: 76333053--76333201 Score: 208
Period size: 31 Copynumber: 4.8 Consensus size: 31
76333043 GCAAATGACA
76333053 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
** *
76333084 AGTGAAAAGTGGTAGCTTCTACTACCTAATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
76333115 AGTGAAAAATGGTAGCTCCGACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
76333146 AGTGAAAAATGGTAGCTCCGGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
76333177 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
76333202 AAGTGACAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:76333289 original size:47 final size:46
Alignment explanation
Indices: 76333219--76333342 Score: 149
Period size: 47 Copynumber: 2.7 Consensus size: 46
76333209 AAGTGATTTC
* *
76333219 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
76333265 CTGTATAAGACCATATCTGGGATATGGAATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * * *
76333312 CGTGTAAGACCATAGCTGGGCTATGACATCG
1 CGTATAAGACCATATCTGGGATATGGCATCG
76333343 ATATGTGATA
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 25 0.38
47 40 0.62
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:76335110 original size:13 final size:13
Alignment explanation
Indices: 76335092--76335121 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
76335082 TTTCAATGTA
76335092 ATTTGAATTTTTT
1 ATTTGAATTTTTT
76335105 ATTTGAATTTTTT
1 ATTTGAATTTTTT
76335118 ATTT
1 ATTT
76335122 TTTTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.07, T:0.70
Consensus pattern (13 bp):
ATTTGAATTTTTT
Found at i:76336722 original size:23 final size:23
Alignment explanation
Indices: 76336680--76336724 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
76336670 ATTGAAATAA
**
76336680 ATAAATAATAAAAGGGTTAAAAT
1 ATAAATAATAAAAGAATTAAAAT
*
76336703 ATAAATAATAAAATAATTAAAA
1 ATAAATAATAAAAGAATTAAAA
76336725 CATGCTTAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.27
Consensus pattern (23 bp):
ATAAATAATAAAAGAATTAAAAT
Found at i:76343545 original size:21 final size:22
Alignment explanation
Indices: 76343509--76343549 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
76343499 AAAAAATAAA
*
76343509 TATACATTTGATATTTTATATT
1 TATAAATTTGATATTTTATATT
76343531 TATAAATTT-ATATTTTATA
1 TATAAATTTGATATTTTATA
76343550 GTATTCTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TATAAATTTGATATTTTATATT
Found at i:76346045 original size:7 final size:7
Alignment explanation
Indices: 76346033--76346059 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
76346023 ATTGTCGGAA
76346033 AAATATG
1 AAATATG
76346040 AAATATG
1 AAATATG
76346047 AAATATG
1 AAATATG
76346054 AAATAT
1 AAATAT
76346060 AGTAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (7 bp):
AAATATG
Found at i:76346129 original size:21 final size:19
Alignment explanation
Indices: 76346100--76346139 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
76346090 AAAAGTAATT
*
76346100 TTAATTTTATTTAATTTATAA
1 TTAAATTTATTT--TTTATAA
76346121 TTAAATTTATTTTTTATAA
1 TTAAATTTATTTTTTATAA
76346140 AGTAAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 7 0.39
21 11 0.61
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTAAATTTATTTTTTATAA
Found at i:76361357 original size:26 final size:25
Alignment explanation
Indices: 76361328--76361378 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
76361318 TTATTTTTAT
*
76361328 TTTTATTAAAATATATTTAACAATAA
1 TTTTATTAAAATATA-ATAACAATAA
*
76361354 TTTTATTAAAATTTAATAACAATAA
1 TTTTATTAAAATATAATAACAATAA
76361379 CAATAATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (25 bp):
TTTTATTAAAATATAATAACAATAA
Found at i:76366751 original size:12 final size:11
Alignment explanation
Indices: 76366715--76366753 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
76366705 AACTCTAAAC
76366715 ATAAATAATAAA
1 ATAAATAAT-AA
*
76366727 ATAAATATTAA
1 ATAAATAATAA
76366738 ATAAATCAATAA
1 ATAAAT-AATAA
76366750 ATAA
1 ATAA
76366754 TTGTGTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAATAATAA
Found at i:76368524 original size:15 final size:15
Alignment explanation
Indices: 76368504--76368534 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76368494 CTATCATCTT
76368504 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
76368519 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
76368534 T
1 T
76368535 TACAACGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:76368568 original size:20 final size:20
Alignment explanation
Indices: 76368543--76368584 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
76368533 CTTACAACGG
*
76368543 TACAACGGTTTTGACTATAT
1 TACAACGGCTTTGACTATAT
*
76368563 TACAACTGCTTTGACTATAT
1 TACAACGGCTTTGACTATAT
76368583 TA
1 TA
76368585 ACTCTAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
TACAACGGCTTTGACTATAT
Found at i:76371985 original size:18 final size:18
Alignment explanation
Indices: 76371952--76371986 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
76371942 ACCAGCAGAT
* *
76371952 GGCATACTGACTTGTTGG
1 GGCATACTAACCTGTTGG
76371970 GGCATACTAACCTGTTG
1 GGCATACTAACCTGTTG
76371987 TGGAGAGCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.31
Consensus pattern (18 bp):
GGCATACTAACCTGTTGG
Found at i:76373248 original size:15 final size:15
Alignment explanation
Indices: 76373228--76373258 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
76373218 CTATCATCTT
76373228 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
76373243 TAACTGCTAACAGAC
1 TAACTGCTAACAGAC
76373258 T
1 T
76373259 TACAACGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.23
Consensus pattern (15 bp):
TAACTGCTAACAGAC
Found at i:76373292 original size:20 final size:20
Alignment explanation
Indices: 76373267--76373308 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
76373257 CTTACAACGG
*
76373267 TACAACGGTTTTGACTATAT
1 TACAACGGCTTTGACTATAT
*
76373287 TACAACTGCTTTGACTATAT
1 TACAACGGCTTTGACTATAT
76373307 TA
1 TA
76373309 ACTCTAACAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.31, C:0.17, G:0.12, T:0.40
Consensus pattern (20 bp):
TACAACGGCTTTGACTATAT
Found at i:76375403 original size:5 final size:5
Alignment explanation
Indices: 76375393--76375432 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
76375383 AAACTCTCAA
76375393 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
76375433 ATTATCCATT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:76377554 original size:17 final size:17
Alignment explanation
Indices: 76377532--76377571 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
76377522 TTATATTTAA
*
76377532 TTTATATAGATTAAAAT
1 TTTATATAAATTAAAAT
76377549 TTTATATAAATTAAAAT
1 TTTATATAAATTAAAAT
76377566 TTTATA
1 TTTATA
76377572 ATTATTTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TTTATATAAATTAAAAT
Found at i:76381132 original size:41 final size:41
Alignment explanation
Indices: 76381070--76381148 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
76381060 TAACAAAGAC
* *
76381070 AACATATTCATATTCATGGAGACAATGAATTCTATATTGAG
1 AACATATTCATATTCACGGAGACAATAAATTCTATATTGAG
76381111 AACATATTCATATTCACGGAGACAATAAATTCTATATT
1 AACATATTCATATTCACGGAGACAATAAATTCTATATT
76381149 CAAACTTAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (41 bp):
AACATATTCATATTCACGGAGACAATAAATTCTATATTGAG
Found at i:76381147 original size:24 final size:22
Alignment explanation
Indices: 76381066--76381150 Score: 63
Period size: 23 Copynumber: 3.9 Consensus size: 22
76381056 TCATTAACAA
* *
76381066 AGACAACATATTCATATTCATGG
1 AGACAATAAATTCATATTCA-GG
* *
76381089 AGACAATGAATTCTATATTGA-G
1 AGACAATAAATTC-ATATTCAGG
76381111 A-AC-AT--ATTCATATTCACGG
1 AGACAATAAATTCATATTCA-GG
76381130 AGACAATAAATTCTATATTCA
1 AGACAATAAATTC-ATATTCA
76381151 AACTTAACGT
Statistics
Matches: 49, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
17 6 0.12
18 4 0.08
19 2 0.04
20 4 0.08
21 4 0.08
22 2 0.04
23 14 0.29
24 13 0.27
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (22 bp):
AGACAATAAATTCATATTCAGG
Found at i:76382956 original size:21 final size:22
Alignment explanation
Indices: 76382908--76382958 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
76382898 AAACAGATAT
*
76382908 TTTATAAAAAAATAAATCAGTTAT
1 TTTATAAAAAAATAAAT-A-TTAC
76382932 TTTATAAAAAAATAAAT-TTAC
1 TTTATAAAAAAATAAATATTAC
76382953 TTTATA
1 TTTATA
76382959 TATATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 9 0.35
24 17 0.65
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (22 bp):
TTTATAAAAAAATAAATATTAC
Found at i:76383806 original size:30 final size:29
Alignment explanation
Indices: 76383735--76383813 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 29
76383725 TTAATGCATG
* *
76383735 TTTATTTTATATACATATTATGTGTACTAA
1 TTTATTTTATATAAATATTATGAGTA-TAA
*
76383765 TTAAGTTTTATATAAATTTATTATGAGT-TAA
1 TTTA-TTTTATATAAA--TATTATGAGTATAA
*
76383796 TTTATTTTATATATATAT
1 TTTATTTTATATAAATAT
76383814 ATATATATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
28 3 0.07
30 13 0.32
31 16 0.39
33 9 0.22
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.56
Consensus pattern (29 bp):
TTTATTTTATATAAATATTATGAGTATAA
Found at i:76383810 original size:2 final size:2
Alignment explanation
Indices: 76383803--76383829 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
76383793 TAATTTATTT
76383803 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
76383830 TTGGACTACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:76384306 original size:13 final size:13
Alignment explanation
Indices: 76384288--76384313 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76384278 AATATTGCAT
76384288 GAAAATTTTTATC
1 GAAAATTTTTATC
76384301 GAAAATTTTTATC
1 GAAAATTTTTATC
76384314 AATTATGTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (13 bp):
GAAAATTTTTATC
Found at i:76384794 original size:20 final size:22
Alignment explanation
Indices: 76384764--76384811 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
76384754 GAATATGCAG
*
76384764 TAAATTGAAAG-TTTTTGATAGA
1 TAAA-TGAAAGATTATTGATAGA
76384786 -AAATGAAAGATTATTGATAGA
1 TAAATGAAAGATTATTGATAGA
76384807 TAAAT
1 TAAAT
76384812 CACTTTTACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 6 0.26
21 13 0.57
22 4 0.17
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.35
Consensus pattern (22 bp):
TAAATGAAAGATTATTGATAGA
Found at i:76385539 original size:32 final size:32
Alignment explanation
Indices: 76385498--76385677 Score: 139
Period size: 33 Copynumber: 5.5 Consensus size: 32
76385488 AAATGGCACA
*
76385498 ACTTGAAAAGGTTATGTACACTTTGTGTGTAC
1 ACTTGAAAAGGATATGTACACTTTGTGTGTAC
* * * *
76385530 ACTTGAAAAGGAAAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGATATGTACACTTTGTGTGTAC
* * * * *
76385562 -CATATGAAAAGGAAAGGTATACTATATGTGTAC
1 AC-T-TGAAAAGGATATGTACACTTTGTGTGTAC
* * * * *
76385595 ACTTGAAAACGTTATGTGCATTTTGAGTGTAC
1 ACTTGAAAAGGATATGTACACTTTGTGTGTAC
* * *
76385627 AAATTGAAAAGGGTATGTACACTTCGTGTGTACC
1 -ACTTGAAAAGGATATGTACACTTTGTGTGTA-C
76385661 ACTTGAAAATGGA-ATGT
1 ACTTGAAAA-GGATATGT
76385678 GCACCTCAAG
Statistics
Matches: 115, Mismatches: 27, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
31 1 0.01
32 47 0.41
33 63 0.55
34 4 0.03
ACGTcount: A:0.34, C:0.11, G:0.22, T:0.32
Consensus pattern (32 bp):
ACTTGAAAAGGATATGTACACTTTGTGTGTAC
Found at i:76385570 original size:65 final size:65
Alignment explanation
Indices: 76385495--76385674 Score: 155
Period size: 65 Copynumber: 2.7 Consensus size: 65
76385485 CCCAAATGGC
* * * *
76385495 ACAACTTGAAAAGGTTATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTATACTTTGTGTAT
1 ACAAATTGAAAAGGATATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTAT
* * * * * * * ** * * * *
76385560 AC-CATATGAAAAGGAAAGGTATACTATATGTGTACACTTGAAAACGTTATGTGCATTTTGAGTG
1 ACAAAT-TGAAAAGGATATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTA
76385624 T
65 T
* *
76385625 ACAAATTGAAAAGGGTATGTACACTTCGTGTGTACCACTTGAAAATGGAA
1 ACAAATTGAAAAGGATATGTACACTTTGTGTGTA-CACTTGAAAA-GGAA
76385675 TGTGCACCTC
Statistics
Matches: 83, Mismatches: 28, Indels: 6
0.71 0.24 0.05
Matches are distributed among these distances:
64 1 0.01
65 69 0.83
66 12 0.14
67 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.22, T:0.31
Consensus pattern (65 bp):
ACAAATTGAAAAGGATATGTACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGAGTAT
Found at i:76385574 original size:33 final size:32
Alignment explanation
Indices: 76385498--76385603 Score: 115
Period size: 32 Copynumber: 3.3 Consensus size: 32
76385488 AAATGGCACA
** * * *
76385498 ACTTGAAAAGGTTATGTACACTTTGTGTGTAC
1 ACTTGAAAAGGAAAGGTATACTTTGTGTATAC
76385530 ACTTGAAAAGGAAAGGTATACTTTGTGTATAC
1 ACTTGAAAAGGAAAGGTATACTTTGTGTATAC
* * *
76385562 -CATATGAAAAGGAAAGGTATACTATATGTGTAC
1 AC-T-TGAAAAGGAAAGGTATACTTTGTGTATAC
76385595 ACTTGAAAA
1 ACTTGAAAA
76385604 CGTTATGTGC
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
31 1 0.02
32 34 0.54
33 27 0.43
34 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.21, T:0.31
Consensus pattern (32 bp):
ACTTGAAAAGGAAAGGTATACTTTGTGTATAC
Found at i:76385644 original size:33 final size:32
Alignment explanation
Indices: 76385589--76385691 Score: 89
Period size: 33 Copynumber: 3.2 Consensus size: 32
76385579 TATACTATAT
* * *
76385589 GTGTACACTTGAAAACGTTATGTGCATTTTGA
1 GTGTACACTTGAAAACGGTATGTGCACTTCGA
* * * *
76385621 GTGTACAAATTGAAAAGGGTATGTACACTTCGT
1 GTGTAC-ACTTGAAAACGGTATGTGCACTTCGA
* * * *
76385654 GTGTACCACTTGAAAATGGAATGTGCACCTCAA
1 GTGTA-CACTTGAAAACGGTATGTGCACTTCGA
76385687 GTGTA
1 GTGTA
76385692 AAACTAGAAA
Statistics
Matches: 55, Mismatches: 14, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
32 6 0.11
33 48 0.87
34 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (32 bp):
GTGTACACTTGAAAACGGTATGTGCACTTCGA
Found at i:76388073 original size:50 final size:50
Alignment explanation
Indices: 76387958--76388200 Score: 387
Period size: 50 Copynumber: 4.8 Consensus size: 50
76387948 GATAATAACA
* ** * *
76387958 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
76388009 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
76388059 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
76388109 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
76388159 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
76388201 TTACCCAAAT
Statistics
Matches: 179, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 146 0.82
51 33 0.18
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:76388316 original size:13 final size:13
Alignment explanation
Indices: 76388295--76388325 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
76388285 GCTTAGATCA
*
76388295 TCATCAAATAAAT
1 TCATAAAATAAAT
76388308 TCATAAAATAAAT
1 TCATAAAATAAAT
76388321 TCATA
1 TCATA
76388326 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:76388573 original size:30 final size:30
Alignment explanation
Indices: 76388538--76388595 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
76388528 CCTCGACTCT
*
76388538 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
76388568 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
76388596 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:76395246 original size:50 final size:50
Alignment explanation
Indices: 76395131--76395373 Score: 387
Period size: 50 Copynumber: 4.8 Consensus size: 50
76395121 GATAATAACA
* ** * *
76395131 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
76395182 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
76395232 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
76395282 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
76395332 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
76395374 TTACCCAAAT
Statistics
Matches: 179, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 146 0.82
51 33 0.18
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:76395488 original size:13 final size:13
Alignment explanation
Indices: 76395467--76395497 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
76395457 GCTTAGATCA
*
76395467 TCATCAAATAAAT
1 TCATAAAATAAAT
76395480 TCATAAAATAAAT
1 TCATAAAATAAAT
76395493 TCATA
1 TCATA
76395498 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:76395745 original size:30 final size:30
Alignment explanation
Indices: 76395710--76395766 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
76395700 CCTCGACTCT
*
76395710 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
76395740 AACTTTTACATAATTACATTTTTGCCC
1 AACTTTTACAAAATTACAATTTTGCCC
76395767 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.04, T:0.42
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:76402465 original size:50 final size:50
Alignment explanation
Indices: 76402350--76402592 Score: 378
Period size: 50 Copynumber: 4.8 Consensus size: 50
76402340 GATAATAACA
* * ** * *
76402350 TGCCAAAGCCATGTCCCAGACATGATCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * *
76402401 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
76402451 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
76402501 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
76402551 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
76402593 TTACCCAAAT
Statistics
Matches: 178, Mismatches: 14, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
50 146 0.82
51 32 0.18
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:76402708 original size:13 final size:13
Alignment explanation
Indices: 76402687--76402717 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
76402677 GCTTAGATCA
*
76402687 TCATCAAATAAAT
1 TCATAAAATAAAT
76402700 TCATAAAATAAAT
1 TCATAAAATAAAT
76402713 TCATA
1 TCATA
76402718 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:76402964 original size:30 final size:30
Alignment explanation
Indices: 76402930--76402987 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76402920 CCTCGACTCT
**
76402930 AACTTTTTTAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
76402960 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
76402988 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:76409079 original size:30 final size:30
Alignment explanation
Indices: 76409038--76409104 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
76409028 AGAATATATA
* *
76409038 TTTTTAGCACTTACATTTTCAATACTTAAT
1 TTTTTAACACTTACATTTTCAACACTTAAT
** *
76409068 TTTTTAACACTTATTTTTTCAACCCTTAAT
1 TTTTTAACACTTACATTTTCAACACTTAAT
76409098 TTTTTAA
1 TTTTTAA
76409105 TTTATCAAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (30 bp):
TTTTTAACACTTACATTTTCAACACTTAAT
Found at i:76409083 original size:14 final size:15
Alignment explanation
Indices: 76409038--76409104 Score: 66
Period size: 15 Copynumber: 4.5 Consensus size: 15
76409028 AGAATATATA
*
76409038 TTTTTAGCACTTACA-
1 TTTTTAACACTTA-AT
* *
76409053 TTTTCAATACTTAAT
1 TTTTTAACACTTAAT
76409068 TTTTTAACACTT-AT
1 TTTTTAACACTTAAT
*
76409082 TTTTTCAACCCTTAAT
1 TTTTT-AACACTTAAT
76409098 TTTTTAA
1 TTTTTAA
76409105 TTTATCAAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
14 8 0.19
15 28 0.65
16 7 0.16
ACGTcount: A:0.28, C:0.16, G:0.01, T:0.54
Consensus pattern (15 bp):
TTTTTAACACTTAAT
Found at i:76412730 original size:16 final size:16
Alignment explanation
Indices: 76412711--76412741 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76412701 AGAATGTTCG
76412711 TTTGAGTGAATAAATC
1 TTTGAGTGAATAAATC
*
76412727 TTTGGGTGAATAAAT
1 TTTGAGTGAATAAAT
76412742 TTGATTATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.23, T:0.39
Consensus pattern (16 bp):
TTTGAGTGAATAAATC
Found at i:76413865 original size:13 final size:14
Alignment explanation
Indices: 76413843--76413876 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
76413833 TTAATGATTT
76413843 TAAA-AAAAATT-A
1 TAAATAAAAATTAA
76413855 TAAATAAAAATTAA
1 TAAATAAAAATTAA
76413869 TAAATAAA
1 TAAATAAA
76413877 CTAAAATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.20
13 7 0.35
14 9 0.45
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAAAAATTAA
Found at i:76422971 original size:24 final size:25
Alignment explanation
Indices: 76422921--76422971 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
76422911 ATTTTACTAT
* *
76422921 TTTAAAATATAAAAAATATTTTGTA
1 TTTAAAATATAAAAAAAATTATGTA
76422946 TTTAAAAGTA-AAAAAAAATTAT-TA
1 TTTAAAA-TATAAAAAAAATTATGTA
76422970 TT
1 TT
76422972 AAGTAGCGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 17 0.74
26 2 0.09
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (25 bp):
TTTAAAATATAAAAAAAATTATGTA
Found at i:76431184 original size:22 final size:21
Alignment explanation
Indices: 76431149--76431189 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
76431139 AGTCTCTTTA
76431149 TTTTTATTTATAAAATTTATT
1 TTTTTATTTATAAAATTTATT
*
76431170 TTTTTATATTTTAAAATTTA
1 TTTTTAT-TTATAAAATTTA
76431190 AAATTTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTTTATTTATAAAATTTATT
Found at i:76434004 original size:21 final size:21
Alignment explanation
Indices: 76433978--76434022 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
76433968 CCTTCATCAT
76433978 TGATTATCACGTTACTACGGA
1 TGATTATCACGTTACTACGGA
76433999 TGATTATCACGTTACTACGGA
1 TGATTATCACGTTACTACGGA
76434020 TGA
1 TGA
76434023 CTTTTGAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (21 bp):
TGATTATCACGTTACTACGGA
Found at i:76435168 original size:17 final size:16
Alignment explanation
Indices: 76435137--76435171 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
76435127 AAATAATAAT
76435137 AATTTTATATTTAAAA
1 AATTTTATATTTAAAA
*
76435153 AATTTATATTTTTAAAA
1 AATTT-TATATTTAAAA
76435170 AA
1 AA
76435172 AATATTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AATTTTATATTTAAAA
Found at i:76443221 original size:27 final size:28
Alignment explanation
Indices: 76443169--76443223 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
76443159 TTTTTTTTAA
* *
76443169 ATTTTTATGAACTTTTTTATTTTTTATT
1 ATTTTTATGAACTTTTTAATTATTTATT
76443197 ATTTTTAT-AA-TTTTTAAATTATTTATT
1 ATTTTTATGAACTTTTT-AATTATTTATT
76443224 GATGTAACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 5 0.21
27 11 0.46
28 8 0.33
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (28 bp):
ATTTTTATGAACTTTTTAATTATTTATT
Found at i:76446580 original size:16 final size:17
Alignment explanation
Indices: 76446559--76446590 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76446549 TAATATTTAC
76446559 ATATTTATTA-ATAAAT
1 ATATTTATTATATAAAT
76446575 ATATTTATTATATAAA
1 ATATTTATTATATAAA
76446591 ATTTTCGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATATTTATTATATAAAT
Found at i:76448002 original size:29 final size:30
Alignment explanation
Indices: 76447970--76448026 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
76447960 TGGTTTAATA
*
76447970 TGTAATTGTATATATG-AACTTTGATTTTG
1 TGTAATTGTATACATGAAACTTTGATTTTG
* *
76447999 TGTAATTTTATACATGAAATTTTGATTT
1 TGTAATTGTATACATGAAACTTTGATTT
76448027 GATCCAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.30, C:0.04, G:0.14, T:0.53
Consensus pattern (30 bp):
TGTAATTGTATACATGAAACTTTGATTTTG
Found at i:76448027 original size:29 final size:29
Alignment explanation
Indices: 76447947--76448026 Score: 79
Period size: 31 Copynumber: 2.7 Consensus size: 29
76447937 ATACTAAAAT
* * *
76447947 TATACATGAACTATGGTTTAATATGTAATTG
1 TATACATGAACTTTGATTT--TGTGTAATTG
* *
76447978 TATATATGAACTTTGATTTTGTGTAATTT
1 TATACATGAACTTTGATTTTGTGTAATTG
*
76448007 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
76448027 GATCCAATTC
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 15 0.37
30 10 0.24
31 16 0.39
ACGTcount: A:0.33, C:0.05, G:0.14, T:0.49
Consensus pattern (29 bp):
TATACATGAACTTTGATTTTGTGTAATTG
Found at i:76448252 original size:29 final size:31
Alignment explanation
Indices: 76448184--76448262 Score: 74
Period size: 29 Copynumber: 2.6 Consensus size: 31
76448174 AAATTAATGT
* * *
76448184 TTCAAGTATACATTTGA-ACCACAATTAGAAT
1 TTCACGTATACAATT-ACACCACAATTAGAAA
**
76448215 TTCACGTATATTATTACACCA-AATTA-AAA
1 TTCACGTATACAATTACACCACAATTAGAAA
*
76448244 TTCATGTATACAATTACAC
1 TTCACGTATACAATTACAC
76448263 ATTAAATCAA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 18 0.46
30 6 0.15
31 15 0.38
ACGTcount: A:0.42, C:0.18, G:0.06, T:0.34
Consensus pattern (31 bp):
TTCACGTATACAATTACACCACAATTAGAAA
Found at i:76449066 original size:22 final size:22
Alignment explanation
Indices: 76449013--76449066 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 22
76449003 GAATTAGTTG
* * **
76449013 TTTTCTTGTTGTTTTGCTTTCA
1 TTTTATTGTTGTTTTACTACCA
* *
76449035 TTTCACTGTTGTTTTACTACCA
1 TTTTATTGTTGTTTTACTACCA
76449057 TTTTATTGTT
1 TTTTATTGTT
76449067 ATTATTTGGA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.11, C:0.15, G:0.11, T:0.63
Consensus pattern (22 bp):
TTTTATTGTTGTTTTACTACCA
Found at i:76450055 original size:12 final size:13
Alignment explanation
Indices: 76450023--76450057 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
76450013 ATATTTGTCT
76450023 CTTTCCCCAAGTA
1 CTTTCCCCAAGTA
76450036 CTTTCCCCAAGTA
1 CTTTCCCCAAGTA
*
76450049 CTTCCCCCA
1 CTTTCCCCA
76450058 TTTTCTTTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.20, C:0.46, G:0.06, T:0.29
Consensus pattern (13 bp):
CTTTCCCCAAGTA
Found at i:76454653 original size:16 final size:16
Alignment explanation
Indices: 76454605--76454653 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
76454595 ATTTTTAAAA
*
76454605 AATAATAATATTTTTT
1 AATAAAAATATTTTTT
* *
76454621 AATATTTAAATAATTTTT
1 AATA--AAAATATTTTTT
76454639 AATAAAAATATTTTT
1 AATAAAAATATTTTT
76454654 CGTATTTTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
16 13 0.50
18 13 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATAAAAATATTTTTT
Found at i:76454999 original size:15 final size:16
Alignment explanation
Indices: 76454979--76455008 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76454969 TATTTAAAAT
76454979 TTAAAA-TTATTATTG
1 TTAAAATTTATTATTG
76454994 TTAAAATTTATTATT
1 TTAAAATTTATTATT
76455009 AAAATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TTAAAATTTATTATTG
Found at i:76455027 original size:19 final size:18
Alignment explanation
Indices: 76454995--76455030 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
76454985 TTATTATTGT
*
76454995 TAAAATTTATTATTAAAA
1 TAAAATTTAATATTAAAA
76455013 TAAAATTGTAATATTAAA
1 TAAAATT-TAATATTAAA
76455031 TTATATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:76455062 original size:22 final size:22
Alignment explanation
Indices: 76454998--76455064 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
76454988 TTATTGTTAA
76454998 AATT-TATTATTAAA-AT-AA-
1 AATTATATTATTAAATATAAAT
* * *
76455016 AATTGTAATATTAAAT-TATATT
1 AATTATATTATTAAATATA-AAT
76455038 AATTATATTATTAAATATAAAT
1 AATTATATTATTAAATATAAAT
76455060 AATTA
1 AATTA
76455065 AATAGGTATG
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
18 4 0.11
19 10 0.26
21 1 0.03
22 21 0.55
23 2 0.05
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (22 bp):
AATTATATTATTAAATATAAAT
Found at i:76459884 original size:45 final size:45
Alignment explanation
Indices: 76459829--76459918 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
76459819 CTTAAACCTT
*
76459829 GAATTAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
1 GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
76459874 GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
1 GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
76459919 ACTTCTTCTA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (45 bp):
GAATCAATGGATTATTACTGGGCATGGGCATTCTTGACTTTGTAG
Found at i:76474253 original size:28 final size:30
Alignment explanation
Indices: 76474210--76474266 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 30
76474200 TGAGATTGAA
76474210 ATATTAAATAACTTATTAAATGA-TAAATT
1 ATATTAAATAACTTATTAAATGATTAAATT
* *
76474239 ATATT-AATAATTTATTATATGATTAAAT
1 ATATTAAATAACTTATTAAATGATTAAAT
76474267 ATAAATAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.60
29 10 0.40
ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46
Consensus pattern (30 bp):
ATATTAAATAACTTATTAAATGATTAAATT
Found at i:76474295 original size:26 final size:27
Alignment explanation
Indices: 76474229--76474296 Score: 68
Period size: 26 Copynumber: 2.5 Consensus size: 27
76474219 AACTTATTAA
* * *
76474229 ATGATAAATTATATTAATAATTTATTAT
1 ATGATTAATTATA-TAATAATTAAATAT
*
76474257 ATGATTAAATATA-AATAATTAAATAT
1 ATGATTAATTATATAATAATTAAATAT
76474283 AT-ATTTAATTATAT
1 ATGA-TTAATTATAT
76474297 CAAAAAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
25 1 0.03
26 21 0.64
28 11 0.33
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (27 bp):
ATGATTAATTATATAATAATTAAATAT
Found at i:76480264 original size:28 final size:28
Alignment explanation
Indices: 76480219--76480272 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
76480209 TTTTTTTATG
*
76480219 TTTTTAAAAATAATTTTAATAATTTTTAA
1 TTTTTAAAAATAAATTT-ATAATTTTTAA
76480248 TTTTT-AAAATAAATTTATAATTTTT
1 TTTTTAAAAATAAATTTATAATTTTT
76480273 TTGAACTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 9 0.38
28 10 0.42
29 5 0.21
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTTTAAAAATAAATTTATAATTTTTAA
Found at i:76480273 original size:28 final size:31
Alignment explanation
Indices: 76480210--76480273 Score: 82
Period size: 28 Copynumber: 2.2 Consensus size: 31
76480200 TTAAAATTAT
* *
76480210 TTTTTTATGTTTTTAAAAATAATTTTAATAA
1 TTTTTTATATTTTTAAAAATAAATTTAATAA
76480241 -TTTTTA-ATTTTT-AAAATAAATTT-ATAA
1 TTTTTTATATTTTTAAAAATAAATTTAATAA
76480268 TTTTTT
1 TTTTTT
76480274 TGAACTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
27 4 0.13
28 15 0.50
29 5 0.17
30 6 0.20
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (31 bp):
TTTTTTATATTTTTAAAAATAAATTTAATAA
Found at i:76480273 original size:29 final size:28
Alignment explanation
Indices: 76480208--76480286 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 28
76480198 TTTTAAAATT
*
76480208 ATTTTTTTATGTTTTTAAAAATAATTTTA
1 ATTTTTTTA-ATTTTTAAAAATAATTTTA
*
76480237 ATAATTTTTAATTTTT-AAAATAAATTTATA
1 AT-TTTTTTAATTTTTAAAAAT-AATTT-TA
76480267 ATTTTTTTGAACTTTTTAAA
1 ATTTTTTT-AA-TTTTTAAA
76480287 TTTTAAAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
28 5 0.12
29 17 0.41
30 12 0.29
31 5 0.12
32 2 0.05
ACGTcount: A:0.38, C:0.01, G:0.03, T:0.58
Consensus pattern (28 bp):
ATTTTTTTAATTTTTAAAAATAATTTTA
Found at i:76489848 original size:33 final size:33
Alignment explanation
Indices: 76489729--76489836 Score: 180
Period size: 33 Copynumber: 3.3 Consensus size: 33
76489719 ATGCTCACTC
* *
76489729 GAGCCAATCCATCCATCACACCAATGCTCATAA
1 GAGCTAATCCAACCATCACACCAATGCTCATAA
76489762 GAGCTAATCCAACCATCACACCAATGCTCATAA
1 GAGCTAATCCAACCATCACACCAATGCTCATAA
* *
76489795 GAGCTAAACCAACCATCACACTAATGCTCATAA
1 GAGCTAATCCAACCATCACACCAATGCTCATAA
76489828 GAGCTAATC
1 GAGCTAATC
76489837 TAACTAGCAC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 70 1.00
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.19
Consensus pattern (33 bp):
GAGCTAATCCAACCATCACACCAATGCTCATAA
Found at i:76492590 original size:28 final size:27
Alignment explanation
Indices: 76492550--76492603 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
76492540 ATTAATTTTT
*
76492550 AAAATTAAAAAAATAAAAAAATATTTA
1 AAAATTAAAAAAACAAAAAAATATTTA
* *
76492577 AAAATTTATAAAAACAAAAAACTATTT
1 AAAA-TTAAAAAAACAAAAAAATATTT
76492604 TTTTAATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.28
Consensus pattern (27 bp):
AAAATTAAAAAAACAAAAAAATATTTA
Found at i:76494033 original size:11 final size:11
Alignment explanation
Indices: 76494017--76494047 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
76494007 AAGTATGGGT
76494017 AGGTATGGGAA
1 AGGTATGGGAA
*
76494028 AGGTATGGGCA
1 AGGTATGGGAA
76494039 AGGTATGGG
1 AGGTATGGG
76494048 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:76498121 original size:18 final size:18
Alignment explanation
Indices: 76498098--76498154 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
76498088 CCCAACTACT
*
76498098 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
76498116 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
76498134 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
76498152 GTA
1 GTA
76498155 AACGGTCGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:76498716 original size:11 final size:11
Alignment explanation
Indices: 76498700--76498730 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
76498690 AAGTATGGGT
76498700 AGGTATGGGAA
1 AGGTATGGGAA
*
76498711 AGGTATGGGCA
1 AGGTATGGGAA
76498722 AGGTATGGG
1 AGGTATGGG
76498731 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:76509966 original size:22 final size:22
Alignment explanation
Indices: 76509941--76509990 Score: 100
Period size: 22 Copynumber: 2.3 Consensus size: 22
76509931 TTGCTTTACG
76509941 TACAAAAACCATTGAGGACAAA
1 TACAAAAACCATTGAGGACAAA
76509963 TACAAAAACCATTGAGGACAAA
1 TACAAAAACCATTGAGGACAAA
76509985 TACAAA
1 TACAAA
76509991 CAATATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.56, C:0.18, G:0.12, T:0.14
Consensus pattern (22 bp):
TACAAAAACCATTGAGGACAAA
Found at i:76511384 original size:11 final size:11
Alignment explanation
Indices: 76511368--76511396 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
76511358 TATAAAAATT
76511368 TTCTATTAAAA
1 TTCTATTAAAA
76511379 TTCTATTAAAA
1 TTCTATTAAAA
76511390 TTC-ATTA
1 TTCTATTA
76511397 TCAAATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.22
11 14 0.78
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.48
Consensus pattern (11 bp):
TTCTATTAAAA
Found at i:76511569 original size:31 final size:30
Alignment explanation
Indices: 76511525--76511613 Score: 94
Period size: 31 Copynumber: 2.9 Consensus size: 30
76511515 TCAAGTTATT
76511525 AAATATTAAAATAAAAATAAAAATATAGAATC
1 AAATA-TAAAATAAAAATAAAAATATAG-ATC
*
76511557 AAA-ACTAAAATAAATAATAAAAAT-TAGATT
1 AAATA-TAAAATAAA-AATAAAAATATAGATC
*
76511587 AAATATAAAGATATAAAT-AAAATATAG
1 AAATATAAA-ATAAAAATAAAAATATAG
76511614 CAAGTCTTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
29 5 0.10
30 15 0.30
31 18 0.36
32 12 0.24
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (30 bp):
AAATATAAAATAAAAATAAAAATATAGATC
Found at i:76511579 original size:19 final size:19
Alignment explanation
Indices: 76511534--76511580 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
76511524 TAAATATTAA
*
76511534 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
76511553 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
76511572 AATAAAAAT
1 AATAAAAAT
76511581 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:76512051 original size:46 final size:46
Alignment explanation
Indices: 76511999--76512146 Score: 163
Period size: 46 Copynumber: 3.2 Consensus size: 46
76511989 AGAGATCTCT
*
76511999 TTTCCAGCAACTAAACACTTCAATTTGCAGCGATAAAACATTTCAA
1 TTTCCAGCAACTAAACACTTCAATTTGCAGCGTTAAAACATTTCAA
*
76512045 TTTCCAGCAACTAAACACTTCAATTTGCAGTAC-TTAAAACATTTTAA
1 TTTCCAGCAACTAAACACTTCAATTTGCAG--CGTTAAAACATTTCAA
* * ** * * * * *
76512092 TTTACAACATTTAAGCACTTCAATTTACAGTGTTTAAACACTTCAA
1 TTTCCAGCAACTAAACACTTCAATTTGCAGCGTTAAAACATTTCAA
*
76512138 TTTGCAGCA
1 TTTCCAGCA
76512147 CTTTAACATC
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
46 48 0.56
47 36 0.42
48 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (46 bp):
TTTCCAGCAACTAAACACTTCAATTTGCAGCGTTAAAACATTTCAA
Found at i:76512093 original size:24 final size:24
Alignment explanation
Indices: 76511999--76512094 Score: 92
Period size: 23 Copynumber: 4.1 Consensus size: 24
76511989 AGAGATCTCT
*
76511999 TTTCCAGCAACT-AAACACTTCAA
1 TTTCCAGCAACTAAAACATTTCAA
* *
76512022 TTTGCAGCGA-TAAAACATTTCAA
1 TTTCCAGCAACTAAAACATTTCAA
*
76512045 TTTCCAGCAACT-AAACACTTCAA
1 TTTCCAGCAACTAAAACATTTCAA
* * *
76512068 TTTGCAG-TACTTAAAACATTTTAA
1 TTTCCAGCAAC-TAAAACATTTCAA
76512092 TTT
1 TTT
76512095 ACAACATTTA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
22 3 0.05
23 43 0.73
24 13 0.22
ACGTcount: A:0.38, C:0.22, G:0.07, T:0.33
Consensus pattern (24 bp):
TTTCCAGCAACTAAAACATTTCAA
Found at i:76512152 original size:47 final size:47
Alignment explanation
Indices: 76512010--76512152 Score: 148
Period size: 47 Copynumber: 3.1 Consensus size: 47
76512000 TTCCAGCAAC
* * *
76512010 TAAACACTTCAATTTGCAGCGATAAAACATTTCAATTTCCAGCAAC--
1 TAAACACTTCAATTTGCAGTGTTAAAACATTTCAATTTACAGC-ACTT
* * *
76512056 TAAACACTTCAATTTGCAGTACTTAAAACATTTTAATTTACAACA-TT
1 TAAACACTTCAATTTGCAGT-GTTAAAACATTTCAATTTACAGCACTT
* * * * *
76512103 TAAGCACTTCAATTTACAGTGTTTAAACACTTCAATTTGCAGCACTT
1 TAAACACTTCAATTTGCAGTGTTAAAACATTTCAATTTACAGCACTT
76512150 TAA
1 TAA
76512153 CATCTCAATT
Statistics
Matches: 79, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
46 38 0.48
47 41 0.52
ACGTcount: A:0.38, C:0.20, G:0.08, T:0.34
Consensus pattern (47 bp):
TAAACACTTCAATTTGCAGTGTTAAAACATTTCAATTTACAGCACTT
Found at i:76512154 original size:23 final size:23
Alignment explanation
Indices: 76512010--76512162 Score: 114
Period size: 23 Copynumber: 6.6 Consensus size: 23
76512000 TTCCAGCAAC
76512010 TAAACACTTCAATTTGCAGCGA-T
1 TAAACACTTCAATTTGCAGC-ACT
* * *
76512033 AAAACATTTCAATTTCCAGCAAC-
1 TAAACACTTCAATTTGCAGC-ACT
*
76512056 TAAACACTTCAATTTGCAGTACT
1 TAAACACTTCAATTTGCAGCACT
* * * * *
76512079 TAAAACATTTTAATTTACAACATT
1 T-AAACACTTCAATTTGCAGCACT
* * ***
76512103 TAAGCACTTCAATTTACAGTGTT
1 TAAACACTTCAATTTGCAGCACT
76512126 TAAACACTTCAATTTGCAGCACT
1 TAAACACTTCAATTTGCAGCACT
*
76512149 TTAACA-TCTCAATT
1 TAAACACT-TCAATT
76512163 AACAACATTT
Statistics
Matches: 100, Mismatches: 26, Indels: 8
0.75 0.19 0.06
Matches are distributed among these distances:
22 3 0.03
23 80 0.80
24 17 0.17
ACGTcount: A:0.37, C:0.21, G:0.07, T:0.35
Consensus pattern (23 bp):
TAAACACTTCAATTTGCAGCACT
Found at i:76512247 original size:23 final size:23
Alignment explanation
Indices: 76512221--76512289 Score: 120
Period size: 23 Copynumber: 3.0 Consensus size: 23
76512211 TTCCAGACAC
76512221 TTCAATTTACAACATTTAAACAT
1 TTCAATTTACAACATTTAAACAT
76512244 TTCAATTTACAACATTTAAACAT
1 TTCAATTTACAACATTTAAACAT
*
76512267 TTCAATTTACAGCATTTTAAACA
1 TTCAATTTACAACA-TTTAAACA
76512290 ATAGCAGCCA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
23 36 0.82
24 8 0.18
ACGTcount: A:0.42, C:0.17, G:0.01, T:0.39
Consensus pattern (23 bp):
TTCAATTTACAACATTTAAACAT
Found at i:76515357 original size:12 final size:12
Alignment explanation
Indices: 76515340--76515365 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
76515330 AAATAGCTTG
76515340 AAGATAAAATAA
1 AAGATAAAATAA
76515352 AAGATAAAATAA
1 AAGATAAAATAA
76515364 AA
1 AA
76515366 CCGGAGAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AAGATAAAATAA
Found at i:76516332 original size:15 final size:15
Alignment explanation
Indices: 76516323--76516352 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76516313 ACCCTTAAAT
76516323 CATAATCCCTAAACC
1 CATAATCCCTAAACC
*
76516338 CATAATCCATAAACC
1 CATAATCCCTAAACC
76516353 TTAAAATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.37, G:0.00, T:0.20
Consensus pattern (15 bp):
CATAATCCCTAAACC
Found at i:76518562 original size:30 final size:30
Alignment explanation
Indices: 76518528--76518587 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
76518518 ATTCTAACTT
76518528 AGAATTCATTCAATTAAATCCCTAATTCCA
1 AGAATTCATTCAATTAAATCCCTAATTCCA
76518558 AGAATTCATTCAATTAAATCCCTAATTCCA
1 AGAATTCATTCAATTAAATCCCTAATTCCA
76518588 TAATTTTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.33
Consensus pattern (30 bp):
AGAATTCATTCAATTAAATCCCTAATTCCA
Found at i:76518771 original size:12 final size:13
Alignment explanation
Indices: 76518756--76518787 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
76518746 TTTCTCTTTT
76518756 ATTTTTCTTTC-C
1 ATTTTTCTTTCTC
76518768 ATTTTTCTTTCTC
1 ATTTTTCTTTCTC
76518781 -TTTTTCT
1 ATTTTTCT
76518788 CCCCTGCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 18 0.95
13 1 0.05
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTTCTTTCTC
Found at i:76521056 original size:29 final size:30
Alignment explanation
Indices: 76520997--76521065 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 30
76520987 AATAATTTAT
*
76520997 ATTTTTATAATTTTTAAAAGATTAAATTAA
1 ATTTTTATAATTTTTAAAAGATTAAAGTAA
* * * *
76521027 ATTTTTATTATTTTTGAGA-ATTTAAGTAA
1 ATTTTTATAATTTTTAAAAGATTAAAGTAA
*
76521056 AATTTTATAA
1 ATTTTTATAA
76521066 ATTATAGATG
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
29 16 0.50
30 16 0.50
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (30 bp):
ATTTTTATAATTTTTAAAAGATTAAAGTAA
Found at i:76527823 original size:549 final size:548
Alignment explanation
Indices: 76526785--76528444 Score: 2432
Period size: 549 Copynumber: 3.0 Consensus size: 548
76526775 CTCACTATTC
**
76526785 CCTCCCTCAATTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
1 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
*
76526850 TTCTTTAGAGAAATGACCTCCAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
66 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
* * *
76526915 CAGAACTCTCTGTTGATCCTCAGTCTTGCTTACCATCTCTTCTTTTGCCTTTTCTATCTCAATCA
131 CAGAACTCTCTGTTGATCCTCGGTCTTGCTGACTATCTCTTCTTTTGCCTTTTCTATCTCAATCA
* * *
76526980 TATGATCT-GAAATAGCTTGTGTTTTACTCTCAAGCTGAACTTCAAGTTCAGCTTTCTGGCTATG
196 CATGAT-TGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATG
* * * * * *
76527044 CATGGA-TCCCAGTTTCTGCTGCAATGTATTTATTTCATCCATCAAGCTCTTGACTTG-GTTCGA
260 CAGGGACT-CCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTT-GA
** * * *
76527107 TGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTCAGTCCGCAGCAACTCCA
323 TGCTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCA
* * *
76527172 TGTCTCCTAGCAGATTGTTAATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTGTCTCA
388 TGTCTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCA
* * * *
76527237 TTATCCTCAAACTTCTTTGTGAGAGTAAAAAGTTCTTCTTGTCTCGTCTTTAATACCCTCTCGAG
453 TTATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTCGT-TTTGATATCATCTCGAG
** *
76527302 TTCTGAAATTTGATATTGCAGTCCCATATTTT
517 TTCTGAAATTTGGGATTGCAGTCCTATATTTT
*
76527334 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAGGTCCTCTTCCAGTTCACCTTTCTGG
1 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
76527399 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
66 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
*
76527464 CAGAACTCTCTGTTGATCCTCGGTCTTGCTGACTATCTCTTCTTTTGCCTTCTCTATCTCAATCA
131 CAGAACTCTCTGTTGATCCTCGGTCTTGCTGACTATCTCTTCTTTTGCCTTTTCTATCTCAATCA
* * **
76527529 CATGATTGGAAATAGCTTGAGTTTTTCTCTCAAGCTGAACTTCCAGTTCTGCTTGATGGCTATGC
196 CATGATTGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATGC
* *
76527594 AGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCCCTTGACCTGAGTTGATGC
261 AGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGATGC
* *
76527659 TTCATCGCCTTTCACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGGGACTCCATGT
326 TTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCATGT
* * ** * *
76527724 CTGCTAGCAAATTGTTGATCTGCACTGTTAAATTCTCCACTCTAGATAGCGATTCTTTCTCGTTG
391 CTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCATTA
* *
76527789 TCCTCAAACTTCTCTGTGAGTGTCAAAAGTTCTTCTTGTCTCTGTTTTGATATCATCTCGAGTT-
456 TCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTC-GTTTTGATATCATCTCGAGTTC
* *
76527853 TGGAAATTTGGGATTGCAGTCCTAAACTTT
520 T-GAAATTTGGGATTGCAGTCCTATATTTT
* * * ** *
76527883 CCTCCCTCAGCTGACCATTCTCTTTGATTTTAGTTCGCAAATCCTCTTCCAACTCACCTTTCTGA
1 CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
* * * *
76527948 TTCTTTAAAGAATTGACATCAAATTCTAGTTCCTTCATTTGTGCCAGCAAACCCTCTTTCTCCTG
66 TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
* * **
76528013 CAGAACTCTTTGTTGATCCTCGGTCTTGCTTG-CTATCTCTTCTTTTGCATTTTCTATCTTGATC
131 CAGAACTCTCTGTTGATCCTCGGTCTTGC-TGACTATCTCTTCTTTTGCCTTTTCTATCTCAATC
* * * *
76528077 ACATGATCGGAAATAGCTCGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGACTCTG
195 ACATGATTGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATG
* * *
76528142 CAGGGACTCCAGCTCCTGCTGCAAATTTTTTATCTGATCCATCAAGCTCTTGACTTGAGTCGATG
260 CAGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGATG
** * * *
76528207 CTTCATCATCTTTTACTGCAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGTGACTCCATG
325 CTTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCATG
* *
76528272 TCTGCTAGCAGATTGTTGATCTGCACTGTCAGATTCTCCACTCTAGACAATGATTCTTTCTCATT
390 TCTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCATT
* * * * * *
76528337 ATCCTCAAATTTCTTTGCGAGAGTCAAAAGTTCTTCTTCTCTCTTTTTTGACATCATCTCAAGTT
455 ATCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTC-GTTTTGATATCATCTCGAGTT
*
76528402 CTGAAATTTGGGATTGCAGTCCTATATTTA
519 CTGAAATTTGGGATTGCAGTCCTATATTTT
76528432 CCTCTCC-CAGCTG
1 CCTC-CCTCAGCTG
76528445 TTTTGCTTCA
Statistics
Matches: 1000, Mismatches: 103, Indels: 16
0.89 0.09 0.01
Matches are distributed among these distances:
548 2 0.00
549 987 0.99
550 11 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (548 bp):
CCTCCCTCAGCTGACCATTCTCTTCGATTTTAGTTCTCAAGTCCTCTTCCAGTTCACCTTTCTGG
TTCTTTAGAGAAATGACCTCAAATTCTAGTTCCTTCATTTGTGCCAACAAACCCTCTTTCTCCTG
CAGAACTCTCTGTTGATCCTCGGTCTTGCTGACTATCTCTTCTTTTGCCTTTTCTATCTCAATCA
CATGATTGGAAATAGCTTGAGTTTTACTCTCAAGCTGAACTTCAAGTTCTGCTTTCTGGCTATGC
AGGGACTCCAGCTCCTGCTGCAAAGTATTTATCTGATCCATCAAGCTCTTGACTTGAGTTGATGC
TTCATCGCCTTTAACTACAATATGTTCTTCCAACTGAGCTTTCTGGGTGCGTAGCGACTCCATGT
CTGCTAGCAGATTGTTGATCTGCACTGTCAAATTCTCCACTCTAGATAATGATTCTTTCTCATTA
TCCTCAAACTTCTTTGTGAGAGTCAAAAGTTCTTCTTGTCTCGTTTTGATATCATCTCGAGTTCT
GAAATTTGGGATTGCAGTCCTATATTTT
Found at i:76534022 original size:117 final size:116
Alignment explanation
Indices: 76533882--76534164 Score: 376
Period size: 117 Copynumber: 2.5 Consensus size: 116
76533872 TTGCTTGCAT
* * *
76533882 TCATTGAATCCCTCA-ACTCCCTCAGCTCAGCTTCACAACTGGCAAGCTTCTCTTTAAGCTCACC
1 TCATTGAATCCCT-AGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACC
* *
76533946 ATTTTCGTGTTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCCTGCC
65 ATTTTCGTGCTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCATGCC
* * * * **
76533998 TCCATTGAATCCCTAGATTTCCTCAGCTCAACTTCACAGGTAGCAAGCTTCTCTTTAAGGTGTCC
1 T-CATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACC
* *
76534063 ATTTTCGTGCTCTAGCCTTGAAATGGATTCAGTCCATGCATTTTTGCATGCC
65 ATTTTCGTGCTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCATGCC
* * *
76534115 T-A--GTATCCCTAGAGTTCCTCACCTCAGCTTCACAAGTAGCAAGCTTCTCT
1 TCATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCT
76534165 CCGAACTTTC
Statistics
Matches: 147, Mismatches: 18, Indels: 7
0.85 0.10 0.04
Matches are distributed among these distances:
113 43 0.29
115 1 0.01
116 2 0.01
117 101 0.69
ACGTcount: A:0.22, C:0.29, G:0.16, T:0.33
Consensus pattern (116 bp):
TCATTGAATCCCTAGACTTCCTCAGCTCAGCTTCACAAGTAGCAAGCTTCTCTTTAAGCTCACCA
TTTTCGTGCTCTAGCCTTGAAATGGATTCAGTCCATGAATTCTTGCATGCC
Found at i:76534188 original size:113 final size:115
Alignment explanation
Indices: 76533901--76534217 Score: 316
Period size: 117 Copynumber: 2.8 Consensus size: 115
76533891 CCCTCAACTC
* * * * ** ** * *
76533901 CCTCAGCTCAGCTTCACAACTGGCAAGCTTCTCTTTAAGCTCACCATTTTCGTGTTCTAGCCTTG
1 CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCTCGAAGCTGTCCATTATCGTGCTCTAGCCTTG
* *
76533966 AAATGGATTCAGTCCATGAATTCTTGCCTGCCTCCATTGAATCCCTAGATTT
66 AAATGGATTCAGTCCATGAATTCTTGCATGCCT-CA-TGAATCCCTAGAGTT
* * ** * *
76534018 CCTCAGCTCAACTTCACAGGTAGCAAGCTTCTCTTTAAGGTGTCCATTTTCGTGCTCTAGCCTTG
1 CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCTCGAAGCTGTCCATTATCGTGCTCTAGCCTTG
* * *
76534083 AAATGGATTCAGTCCATGCATTTTTGCATGCCT-A-GTATCCCTAGAGTT
66 AAATGGATTCAGTCCATGAATTCTTGCATGCCTCATGAATCCCTAGAGTT
* * * * *
76534131 CCTCACCTCAGCTTCACAAGTAGCAAGCTTCTCTCCGAA-CTTTCTATTATCTTGCTCTAACCTT
1 CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCT-CGAAGCTGTCCATTATCGTGCTCTAGCCTT
* * * *
76534195 GAATTCGATTCAGACAATGAATT
65 GAAATGGATTCAGTCCATGAATT
76534218 TCTGGCCATC
Statistics
Matches: 170, Mismatches: 29, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
113 80 0.47
114 2 0.01
115 1 0.01
117 87 0.51
ACGTcount: A:0.23, C:0.28, G:0.15, T:0.34
Consensus pattern (115 bp):
CCTCACCTCAACTTCACAAGTAGCAAGCTTCTCTCGAAGCTGTCCATTATCGTGCTCTAGCCTTG
AAATGGATTCAGTCCATGAATTCTTGCATGCCTCATGAATCCCTAGAGTT
Found at i:76534272 original size:25 final size:25
Alignment explanation
Indices: 76534244--76534293 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
76534234 CAATTCCTTA
76534244 ACTTCCTTATCTCAACTTCACCGGT
1 ACTTCCTTATCTCAACTTCACCGGT
*
76534269 ACTTCCTTATCTCAGCTTCACCGGT
1 ACTTCCTTATCTCAACTTCACCGGT
76534294 GGCAACCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.18, C:0.36, G:0.10, T:0.36
Consensus pattern (25 bp):
ACTTCCTTATCTCAACTTCACCGGT
Found at i:76546397 original size:43 final size:44
Alignment explanation
Indices: 76546320--76546408 Score: 144
Period size: 43 Copynumber: 2.0 Consensus size: 44
76546310 GAGGTACCTA
*
76546320 AAACAAATTATAAATAATATGATTAAATCAACCAATTACGTGTT
1 AAACAAATTATAAATAATATGATTAAATCAACCAATTACATGTT
* *
76546364 AAACAAATTATAAGTAAT-TGATTAAATCTACCAATTACATGTT
1 AAACAAATTATAAATAATATGATTAAATCAACCAATTACATGTT
76546407 AA
1 AA
76546409 TTTTGGAAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
43 25 0.60
44 17 0.40
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (44 bp):
AAACAAATTATAAATAATATGATTAAATCAACCAATTACATGTT
Found at i:76546632 original size:17 final size:17
Alignment explanation
Indices: 76546610--76546654 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
76546600 AATTTATTTT
76546610 TATAAAAATTATAAATA
1 TATAAAAATTATAAATA
*
76546627 TATAAATTATTA-AAATA
1 TATAAA-AATTATAAATA
76546644 -AT-AAAATTATA
1 TATAAAAATTATA
76546655 TTTTTACTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
14 4 0.17
15 3 0.12
16 2 0.08
17 11 0.46
18 4 0.17
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TATAAAAATTATAAATA
Found at i:76551611 original size:20 final size:20
Alignment explanation
Indices: 76551586--76551623 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
76551576 TTTATAGTTA
76551586 AAATTTTGTT-TTAATAATTT
1 AAATTTT-TTCTTAATAATTT
76551606 AAATTTTTTCTTAATAAT
1 AAATTTTTTCTTAATAAT
76551624 AGTTATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (20 bp):
AAATTTTTTCTTAATAATTT
Found at i:76553700 original size:18 final size:16
Alignment explanation
Indices: 76553662--76553694 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
76553652 AATAATTCAA
76553662 AAAATTATTTAAAAAT
1 AAAATTATTTAAAAAT
76553678 AAAATT-TTATAAAAAT
1 AAAATTATT-TAAAAAT
76553694 A
1 A
76553695 GAAAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AAAATTATTTAAAAAT
Found at i:76554475 original size:22 final size:22
Alignment explanation
Indices: 76554450--76554491 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
76554440 GGATTGAAAT
76554450 TAAAT-TATAAATTTTATTATAA
1 TAAATATAT-AATTTTATTATAA
76554472 TAAATATATAATTTTATTAT
1 TAAATATATAATTTTATTAT
76554492 TTTAATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 16 0.84
23 3 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAAATATATAATTTTATTATAA
Found at i:76554520 original size:17 final size:16
Alignment explanation
Indices: 76554478--76554520 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
76554468 ATAATAAATA
76554478 TATAAT-TTTATTATT
1 TATAATATTTATTATT
76554493 T-TAATAGTTTATATATT
1 TATAATA-TTTAT-TATT
76554510 TATAATATTTA
1 TATAATATTTA
76554521 AAGAATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
14 4 0.17
15 1 0.04
16 5 0.21
17 9 0.38
18 5 0.21
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATAATATTTATTATT
Found at i:76562190 original size:26 final size:27
Alignment explanation
Indices: 76562154--76562217 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
76562144 AAAATATTTG
76562154 TTTTTAATTTTAGTCCATA-TTATCATGA
1 TTTTT-ATTTTA-TCCATATTTATCATGA
** *
76562182 -TTTTATTTTATTTATATTTATCGTGA
1 TTTTTATTTTATCCATATTTATCATGA
76562208 TTTTTATTTT
1 TTTTTATTTT
76562218 GCCAGTTGTG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 4 0.13
26 14 0.45
27 13 0.42
ACGTcount: A:0.23, C:0.06, G:0.06, T:0.64
Consensus pattern (27 bp):
TTTTTATTTTATCCATATTTATCATGA
Found at i:76564014 original size:25 final size:25
Alignment explanation
Indices: 76563963--76564011 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
76563953 ATGTTTATTT
*
76563963 TTATATCATAAAAAATTAAAATTAA
1 TTATATCATAAAAAATTAAAATAAA
76563988 TTATAT-ATATAAAAA-TAAAATAAA
1 TTATATCATA-AAAAATTAAAATAAA
76564012 ATTTAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (25 bp):
TTATATCATAAAAAATTAAAATAAA
Found at i:76566302 original size:29 final size:29
Alignment explanation
Indices: 76566243--76566303 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
76566233 CTAAACTTAT
** *
76566243 ATTTTGATCTATGTAAAAAACATTATTAA
1 ATTTTGATCTATGTAAAAAACAAAATAAA
*
76566272 ATTTTGATCTTTGCTAAAAAA-AAAATAAA
1 ATTTTGATCTATG-TAAAAAACAAAATAAA
76566301 ATT
1 ATT
76566304 CTAGATTCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.39
Consensus pattern (29 bp):
ATTTTGATCTATGTAAAAAACAAAATAAA
Done.