Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 244 of 259
Found at i:76566662 original size:30 final size:30
Alignment explanation
Indices: 76566622--76566694 Score: 83
Period size: 31 Copynumber: 2.4 Consensus size: 30
76566612 AATTATATAT
*
76566622 AAACTTTAATTTGGTGCAATTATATACATG
1 AAACTTTAATTTGGTGCAAATATATACATG
* ** * *
76566652 AAACTCTAATTGTGGTTTAAATGTATACTTG
1 AAACTTTAATT-TGGTGCAAATATATACATG
76566683 AAACTTTAATTT
1 AAACTTTAATTT
76566695 TGATTTAATC
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
30 11 0.31
31 24 0.69
ACGTcount: A:0.36, C:0.10, G:0.12, T:0.42
Consensus pattern (30 bp):
AAACTTTAATTTGGTGCAAATATATACATG
Found at i:76566685 original size:31 final size:31
Alignment explanation
Indices: 76566644--76566702 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 31
76566634 GGTGCAATTA
*
76566644 TATACATGAAACTCTAATTGTGGTTTAAATG
1 TATACATGAAACTCTAATTGTGATTTAAATG
* * *
76566675 TATACTTGAAACTTTAATTTTGATTTAA
1 TATACATGAAACTCTAATTGTGATTTAA
76566703 TCATACATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 24 1.00
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (31 bp):
TATACATGAAACTCTAATTGTGATTTAAATG
Found at i:76566878 original size:29 final size:30
Alignment explanation
Indices: 76566835--76566913 Score: 106
Period size: 29 Copynumber: 2.6 Consensus size: 30
76566825 GAATTGGATC
*
76566835 AAATCAAAATTTCATGTATACAATTGCACA-
1 AAATC-AAAGTTCATGTATACAATTGCACAT
76566865 AAATCAAAGTTCATGTATACAATTGCACATT
1 AAATCAAAGTTCATGTATACAATTGCACA-T
* *
76566896 GAATCATAGTTCATGTAT
1 AAATCAAAGTTCATGTAT
76566914 TAAATTTGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 23 0.52
30 5 0.11
31 16 0.36
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (30 bp):
AAATCAAAGTTCATGTATACAATTGCACAT
Found at i:76566966 original size:22 final size:20
Alignment explanation
Indices: 76566933--76566985 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
76566923 TATTTATCCC
76566933 ATTATTAAATA-TTAAAATAAT
1 ATTA-TAAATATTTAAAA-AAT
76566954 ATAATATAAATATTTAAAAAAT
1 AT--TATAAATATTTAAAAAAT
76566976 ATTATAAATA
1 ATTATAAATA
76566986 ACATGGACAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
20 8 0.28
21 2 0.07
22 11 0.38
23 8 0.28
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATTATAAATATTTAAAAAAT
Found at i:76569043 original size:29 final size:29
Alignment explanation
Indices: 76569000--76569058 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
76568990 TTATCATGTG
* *
76569000 ATGGGGACAACTATGCAATCTTAAATAAT
1 ATGGAGACAACTATGCAATCTTAAACAAT
* *
76569029 ATGGAGACAATTATGTAATCTTAAACAAT
1 ATGGAGACAACTATGCAATCTTAAACAAT
76569058 A
1 A
76569059 ATATTACTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (29 bp):
ATGGAGACAACTATGCAATCTTAAACAAT
Found at i:76569739 original size:13 final size:13
Alignment explanation
Indices: 76569721--76569749 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
76569711 TTAATTTTCT
76569721 TAAAAAAAATCTA
1 TAAAAAAAATCTA
76569734 TAAAAAAAATCTA
1 TAAAAAAAATCTA
76569747 TAA
1 TAA
76569750 GTTATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAAAAAAATCTA
Found at i:76571972 original size:25 final size:25
Alignment explanation
Indices: 76571935--76571983 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
76571925 TCATTAATAT
76571935 CTTAACTTTACTGTTTCA-AGTAAAG
1 CTTAACTTTACTGTTT-ATAGTAAAG
76571960 CTTAA-TTTGACTGTTTATAGTAAA
1 CTTAACTTT-ACTGTTTATAGTAAA
76571984 AGACACTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (25 bp):
CTTAACTTTACTGTTTATAGTAAAG
Found at i:76575764 original size:75 final size:75
Alignment explanation
Indices: 76575666--76575805 Score: 167
Period size: 75 Copynumber: 1.9 Consensus size: 75
76575656 CCAATTTATA
* *
76575666 GGATGCACAAAGGGGGCACAAGGGAGCAC-CATGTTCTGCAA-GGCACATGGTGGTGGAAAAAGG
1 GGATGCACAAAGGGGGCACAAGGGAGCACTCAT-TTCTGCAAGGGC-CATGGAGGGGGAAAAAGG
76575729 TGCACATATCTG
64 TGCACATATCTG
* * ** * * *
76575741 GGATGTACAAAGGGTGCTGAAGGGAGTACTCCTTTCTGTAAGGGCCATGGAGGGGGAAAAAGGTG
1 GGATGCACAAAGGGGGCACAAGGGAGCACTCATTTCTGCAAGGGCCATGGAGGGGGAAAAAGGTG
76575806 TGCATTTCAA
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
75 49 0.91
76 5 0.09
ACGTcount: A:0.29, C:0.16, G:0.37, T:0.18
Consensus pattern (75 bp):
GGATGCACAAAGGGGGCACAAGGGAGCACTCATTTCTGCAAGGGCCATGGAGGGGGAAAAAGGTG
CACATATCTG
Found at i:76579946 original size:90 final size:92
Alignment explanation
Indices: 76579790--76579972 Score: 327
Period size: 90 Copynumber: 2.0 Consensus size: 92
76579780 AATGCTCTCC
76579790 TGCAAATCTAGGTTTGTCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
1 TGCAAATCTAGGTTTGTCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
76579855 CTTTAATATTATTTTTATCTCCCTTGTT
66 CTTTAATATTA-TTTTATCTCCCTTGTT
*
76579883 TGCAAATCTAGGTTTG-CC-C-CAAGTTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
1 TGCAAATCTAGGTTTGTCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
76579945 CTTTAATATTATTTTATCTCCCTTGTT
66 CTTTAATATTATTTTATCTCCCTTGTT
76579972 T
1 T
76579973 TTAGCTCCTA
Statistics
Matches: 89, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
89 17 0.19
90 53 0.60
91 1 0.01
92 2 0.02
93 16 0.18
ACGTcount: A:0.23, C:0.20, G:0.14, T:0.43
Consensus pattern (92 bp):
TGCAAATCTAGGTTTGTCCTCTCAAATTTCATGAATGAAAGGCTTCAATTCTCATTTCACGGTTG
CTTTAATATTATTTTATCTCCCTTGTT
Found at i:76586045 original size:20 final size:20
Alignment explanation
Indices: 76586022--76586071 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
76586012 AAATCCAAAT
76586022 TAAAATACTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
*
76586042 TAAAATCCTAAAATTCAGGA
1 TAAAATACTAAAATTCAGGA
76586062 TAAGAATACT
1 TAA-AATACT
76586072 GATGTGACAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 22 0.81
21 5 0.19
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.26
Consensus pattern (20 bp):
TAAAATACTAAAATTCAGGA
Found at i:76587619 original size:3 final size:3
Alignment explanation
Indices: 76587613--76587638 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
76587603 CTTCTTGCCA
76587613 CCG CCG CCG CCG CCG CCG CCG CCG CC
1 CCG CCG CCG CCG CCG CCG CCG CCG CC
76587639 ACCACCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.69, G:0.31, T:0.00
Consensus pattern (3 bp):
CCG
Found at i:76590128 original size:73 final size:73
Alignment explanation
Indices: 76590046--76590190 Score: 281
Period size: 73 Copynumber: 2.0 Consensus size: 73
76590036 AAATTCATAT
*
76590046 GTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACTTAACATCAAGTGATCTCTTAATT
1 GTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACGTAACATCAAGTGATCTCTTAATT
76590111 ATATTTAG
66 ATATTTAG
76590119 GTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACGTAACATCAAGTGATCTCTTAATT
1 GTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACGTAACATCAAGTGATCTCTTAATT
76590184 ATATTTA
66 ATATTTA
76590191 TAGCACTTGA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.34
Consensus pattern (73 bp):
GTCAAATAATAATAAAAATTTGACTGAAATAAGAGTCATACGTAACATCAAGTGATCTCTTAATT
ATATTTAG
Found at i:76594971 original size:26 final size:26
Alignment explanation
Indices: 76594942--76594993 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76594932 TAACAATGAG
* * *
76594942 TAAATTAAGAAGAAAATAAAATAAAA
1 TAAAATAAGAAGAAAAAAAAAGAAAA
*
76594968 TAAAATCAGAAGAAAAAAAAAGAAAA
1 TAAAATAAGAAGAAAAAAAAAGAAAA
76594994 GTATGAAATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.13
Consensus pattern (26 bp):
TAAAATAAGAAGAAAAAAAAAGAAAA
Found at i:76600381 original size:13 final size:13
Alignment explanation
Indices: 76600363--76600388 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76600353 CTTGGTTGTC
76600363 TTTTAGGAAAATA
1 TTTTAGGAAAATA
76600376 TTTTAGGAAAATA
1 TTTTAGGAAAATA
76600389 ACAGCATTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (13 bp):
TTTTAGGAAAATA
Found at i:76606854 original size:6 final size:5
Alignment explanation
Indices: 76606837--76606892 Score: 76
Period size: 5 Copynumber: 10.4 Consensus size: 5
76606827 AAAACTCGTA
76606837 AAAAT AAAAT AAATAT AAACAT AAAAT AAAAT AAAAT AAAAT AAATAT
1 AAAAT AAAAT AAA-AT AAA-AT AAAAT AAAAT AAAAT AAAAT AAA-AT
76606885 AAACAT AA
1 AAA-AT AA
76606893 TACAAACTCG
Statistics
Matches: 47, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
5 28 0.60
6 19 0.40
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:76606894 original size:11 final size:11
Alignment explanation
Indices: 76606848--76606899 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
76606838 AAATAAAATA
76606848 AATATAAACAT
1 AATATAAACAT
*
76606859 AAAATAAA-AT
1 AATATAAACAT
*
76606869 AAAATAAA-AT
1 AATATAAACAT
76606879 AAATATAAACAT
1 -AATATAAACAT
*
76606891 AATACAAAC
1 AATATAAAC
76606900 TCGGCAGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
10 12 0.33
11 22 0.61
12 2 0.06
ACGTcount: A:0.71, C:0.08, G:0.00, T:0.21
Consensus pattern (11 bp):
AATATAAACAT
Found at i:76609327 original size:31 final size:29
Alignment explanation
Indices: 76609257--76609333 Score: 93
Period size: 29 Copynumber: 2.6 Consensus size: 29
76609247 TTTCCCTTAA
*
76609257 GTTACATTTTAGTCACTTATATTTAAAAT
1 GTTACATTTTAGTCACTTATAGTTAAAAT
**
76609286 GTTACATTTTAGTCACTTAT-GTTAACGT
1 GTTACATTTTAGTCACTTATAGTTAAAAT
76609314 GTTGTAACATTTTAGTCACT
1 G-T-T-ACATTTTAGTCACT
76609334 AAGTTGTTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 6 0.14
29 21 0.50
30 1 0.02
31 14 0.33
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.47
Consensus pattern (29 bp):
GTTACATTTTAGTCACTTATAGTTAAAAT
Found at i:76614508 original size:19 final size:19
Alignment explanation
Indices: 76614484--76614526 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
76614474 TGGTGGCGAC
76614484 TCCCATTCTTCATTTTCAT
1 TCCCATTCTTCATTTTCAT
76614503 TCCCATTCTTCATTTTCAT
1 TCCCATTCTTCATTTTCAT
76614522 TCCCA
1 TCCCA
76614527 AAATCTAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.16, C:0.35, G:0.00, T:0.49
Consensus pattern (19 bp):
TCCCATTCTTCATTTTCAT
Found at i:76617660 original size:16 final size:16
Alignment explanation
Indices: 76617639--76617673 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
76617629 GGGAGTGCAC
76617639 ACACTTTTAAGATTAA
1 ACACTTTTAAGATTAA
76617655 ACACTTTTAAGATTAA
1 ACACTTTTAAGATTAA
76617671 ACA
1 ACA
76617674 ATCAACTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (16 bp):
ACACTTTTAAGATTAA
Found at i:76618442 original size:129 final size:129
Alignment explanation
Indices: 76618211--76618470 Score: 412
Period size: 129 Copynumber: 2.0 Consensus size: 129
76618201 TACGTCCTCC
* * * * *
76618211 TTCTACATTAGCAACAATTTTCATGTCAATCGAGCTAAGACTCAATCGACAACTTTGTAAAAATC
1 TTCTACATTAGCAACAATTTTCATGTAAATCGAACTAAAACTCAATAGACAACCTTGTAAAAATC
* * *
76618276 TTCATTTCTCAATTTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTATAATTTAAGTTAT
66 TTAAATTCTCAATCTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTATAATTTAAGTTAT
* *
76618340 TTCTACATTAGTAACAATTTTCATGTAAATCGAACTAAAACTCAATAGACAACCTTGTGAAAATC
1 TTCTACATTAGCAACAATTTTCATGTAAATCGAACTAAAACTCAATAGACAACCTTGTAAAAATC
* *
76618405 TTAAATTCTCAATCTAAACACTCATCAAATTTGAAATTTCCTTTAAAACTGTAATTTAAGTTAT
66 TTAAATTCTCAATCTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTATAATTTAAGTTAT
76618469 TT
1 TT
76618471 AATTTAAAAA
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
129 119 1.00
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.37
Consensus pattern (129 bp):
TTCTACATTAGCAACAATTTTCATGTAAATCGAACTAAAACTCAATAGACAACCTTGTAAAAATC
TTAAATTCTCAATCTAAACACTCATCAAATTTAAAATTTCCTTTAAAACTATAATTTAAGTTAT
Found at i:76619105 original size:28 final size:28
Alignment explanation
Indices: 76619059--76619119 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
76619049 TTCAATTAAT
*
76619059 AAAATAATTAAATAAATAA-ATAAAACAA
1 AAAATAATTAAACAAATAAGATAAAA-AA
* * *
76619087 AAAATAATTGAACATATAAGATACAAAA
1 AAAATAATTAAACAAATAAGATAAAAAA
76619115 AAAAT
1 AAAAT
76619120 CATATTATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 23 0.82
29 5 0.18
ACGTcount: A:0.70, C:0.05, G:0.03, T:0.21
Consensus pattern (28 bp):
AAAATAATTAAACAAATAAGATAAAAAA
Found at i:76619366 original size:32 final size:33
Alignment explanation
Indices: 76619330--76619391 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
76619320 AGAAAAAGTC
*
76619330 TCAAGTTTAAATGCCAAATTAAA-AAAAAACTA
1 TCAAGTTTAAATACCAAATTAAACAAAAAACTA
* *
76619362 TCAAGTTTAGATACTAAATTAAACAAAAAA
1 TCAAGTTTAAATACCAAATTAAACAAAAAA
76619392 AATTAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.26
Consensus pattern (33 bp):
TCAAGTTTAAATACCAAATTAAACAAAAAACTA
Found at i:76619952 original size:25 final size:25
Alignment explanation
Indices: 76619924--76619972 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
76619914 TATTTGTGTT
* *
76619924 ATAATAATTTGATTATACTTATTCC
1 ATAATAATTCGATTATACTAATTCC
* *
76619949 ATAATAGTTCGATTCTACTAATTC
1 ATAATAATTCGATTATACTAATTC
76619973 GATATTTTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (25 bp):
ATAATAATTCGATTATACTAATTCC
Found at i:76627799 original size:18 final size:19
Alignment explanation
Indices: 76627776--76627814 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
76627766 ATATATAGAT
76627776 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
76627794 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
76627813 AT
1 AT
76627815 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:76628164 original size:39 final size:39
Alignment explanation
Indices: 76628054--76628187 Score: 101
Period size: 39 Copynumber: 3.4 Consensus size: 39
76628044 GACCTCGAGT
* * * * *
76628054 CGATAAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
76628095 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
76628133 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
76628172 CGATGAGGCACTGGGT
1 CGATGAGACACTGGGT
76628188 ACCATATTGG
Statistics
Matches: 71, Mismatches: 20, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
38 18 0.25
39 34 0.48
40 4 0.06
41 15 0.21
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:76634322 original size:10 final size:10
Alignment explanation
Indices: 76634293--76634345 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
76634283 TGACAAAAGC
76634293 TTATAAAAAA
1 TTATAAAAAA
* *
76634303 TTCTAGAAAA
1 TTATAAAAAA
*
76634313 TTATACAAAA
1 TTATAAAAAA
76634323 TATATAAAAAA
1 T-TATAAAAAA
*
76634334 ATATAAATAAA
1 TTATAAA-AAA
76634345 T
1 T
76634346 CATTAATTAG
Statistics
Matches: 34, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
10 23 0.68
11 11 0.32
ACGTcount: A:0.64, C:0.04, G:0.02, T:0.30
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:76646647 original size:18 final size:17
Alignment explanation
Indices: 76646596--76646647 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
76646586 TTTCTTTTTC
76646596 TTCCTATTTTTCTAATAG
1 TTCCTATTTTT-TAATAG
* * *
76646614 TTCGTGTCTTTCTAATAG
1 TTCCTAT-TTTTTAATAG
76646632 TTCCTATTTTATTAAT
1 TTCCTATTTT-TTAAT
76646648 TTATTTATAT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.21, C:0.15, G:0.08, T:0.56
Consensus pattern (17 bp):
TTCCTATTTTTTAATAG
Found at i:76647313 original size:57 final size:57
Alignment explanation
Indices: 76647230--76647341 Score: 161
Period size: 57 Copynumber: 2.0 Consensus size: 57
76647220 ATTATTGTGG
* * *
76647230 GCATGGGGTCCACTCCTTTGAGCTTCAGGTCCTTAAATTGGGCCGAAATCTTCTTTA
1 GCATGGGCTCCACTCATTTGAGCTTCAAGTCCTTAAATTGGGCCGAAATCTTCTTTA
* * * *
76647287 GCATGGGCTCTACTCATTTGGGCTTCAAGTTCTTAAATTGGGCTGAAATCTTCTT
1 GCATGGGCTCCACTCATTTGAGCTTCAAGTCCTTAAATTGGGCCGAAATCTTCTT
76647342 CATTGAAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
57 48 1.00
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (57 bp):
GCATGGGCTCCACTCATTTGAGCTTCAAGTCCTTAAATTGGGCCGAAATCTTCTTTA
Found at i:76657417 original size:26 final size:27
Alignment explanation
Indices: 76657372--76657423 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
76657362 ATGATTTAAT
* *
76657372 AAATAATATAAATTTTAAAAACTAAAA
1 AAATAATAAAAATATTAAAAACTAAAA
*
76657399 AAAT-ATAAAAATATTAAAAATTAAA
1 AAATAATAAAAATATTAAAAACTAAA
76657424 TATTGAATGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (27 bp):
AAATAATAAAAATATTAAAAACTAAAA
Found at i:76657728 original size:27 final size:25
Alignment explanation
Indices: 76657688--76657769 Score: 67
Period size: 27 Copynumber: 3.1 Consensus size: 25
76657678 AATTTCGTAT
**
76657688 TTAAATTTTCTTTTTTCAATTAAATA
1 TTAAATTTAATTTTTT-AATTAAATA
*
76657714 CTTAAATTTAATTTTTTTAATTGATATA
1 -TTAAATTTAA-TTTTTTAATT-AAATA
* *
76657742 TT-AATTAAATTTTTTATTTAAATTA
1 TTAAATTTAATTTTTTAATTAAA-TA
76657767 TTA
1 TTA
76657770 CTTATAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 2 0.04
25 13 0.29
26 6 0.13
27 14 0.31
28 10 0.22
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.59
Consensus pattern (25 bp):
TTAAATTTAATTTTTTAATTAAATA
Found at i:76664586 original size:20 final size:21
Alignment explanation
Indices: 76664539--76664588 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
76664529 ATACCACATC
76664539 AGTATTTTTATCCTAAATTTCA
1 AGTA-TTTTATCCTAAATTTCA
* *
76664561 AG-ATTTTATCCTGAATTT-T
1 AGTATTTTATCCTAAATTTCA
76664580 AGTATTTTA
1 AGTATTTTA
76664589 ATTTGGATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 2 0.08
20 20 0.80
21 1 0.04
22 2 0.08
ACGTcount: A:0.30, C:0.10, G:0.08, T:0.52
Consensus pattern (21 bp):
AGTATTTTATCCTAAATTTCA
Found at i:76665038 original size:19 final size:18
Alignment explanation
Indices: 76664994--76665043 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
76664984 TTTAATTCTA
*
76664994 ATATTTTTAAAATTTTAT
1 ATATTTTAAAAATTTTAT
*
76665012 -TATATTAAAAATATTTAT
1 ATATTTTAAAAAT-TTTAT
76665030 ATATTTTAACAAAT
1 ATATTTTAA-AAAT
76665044 CTAATCAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 10 0.38
18 5 0.19
19 7 0.27
20 4 0.15
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
ATATTTTAAAAATTTTAT
Found at i:76666211 original size:19 final size:18
Alignment explanation
Indices: 76666187--76666243 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 18
76666177 AATGTTGTTG
76666187 TTAATAATTTCTTATAAAT
1 TTAATAATTT-TTATAAAT
* *
76666206 TTAATAGTTTTTAAATAAT
1 TTAATAATTTTTATA-AAT
76666225 TTATATAATGTTTTTATAA
1 TTA-ATAA--TTTTTATAA
76666244 TTATTTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
18 4 0.13
19 15 0.50
20 3 0.10
21 1 0.03
22 7 0.23
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (18 bp):
TTAATAATTTTTATAAAT
Found at i:76666233 original size:23 final size:23
Alignment explanation
Indices: 76666207--76666250 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
76666197 CTTATAAATT
76666207 TAATAGTTTTTA-AATAATTTATA
1 TAAT-GTTTTTATAATAATTTATA
*
76666230 TAATGTTTTTATAATTATTTA
1 TAATGTTTTTATAATAATTTA
76666251 AAAATAATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.57
Consensus pattern (23 bp):
TAATGTTTTTATAATAATTTATA
Found at i:76666313 original size:15 final size:17
Alignment explanation
Indices: 76666284--76666328 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 17
76666274 ATTGTTTTTA
76666284 TTTAAATA--ATT-ATT
1 TTTAAATATTATTAATT
76666298 TTTAAA-ATT-TTAATT
1 TTTAAATATTATTAATT
76666313 TTTAAATATTATTAAT
1 TTTAAATATTATTAAT
76666329 GTGATAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 1 0.04
14 8 0.31
15 9 0.35
16 3 0.12
17 5 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTAAATATTATTAATT
Found at i:76682280 original size:44 final size:45
Alignment explanation
Indices: 76682228--76682327 Score: 121
Period size: 44 Copynumber: 2.2 Consensus size: 45
76682218 CTTTGACATA
* * *
76682228 GACTTACATGAATTATTCCTGTCTCCAATGCCACA-TATAATATG
1 GACTTACATGAATCAATCCTGTCTCCAAAGCCACATTATAATATG
** * *
76682272 GACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAATATG
1 GACTTACATGAATCAATCCTGTCTCCAAAGCCACA-TTATAATATG
76682318 GACTTACATG
1 GACTTACATG
76682328 GCTCATTTCT
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 29 0.62
46 18 0.38
ACGTcount: A:0.30, C:0.24, G:0.13, T:0.33
Consensus pattern (45 bp):
GACTTACATGAATCAATCCTGTCTCCAAAGCCACATTATAATATG
Found at i:76682325 original size:46 final size:44
Alignment explanation
Indices: 76682244--76682332 Score: 133
Period size: 46 Copynumber: 2.0 Consensus size: 44
76682234 CATGAATTAT
*
76682244 TCCTGTCTCCAATGCCACATATAATATGGACTTACATGGCTCAA
1 TCCTGTCTCCAAAGCCACATATAATATGGACTTACATGGCTCAA
* *
76682288 TCCTGTCTCCAAAGCCATATTTCTAATATGGACTTACATGGCTCA
1 TCCTGTCTCCAAAGCCACA--TATAATATGGACTTACATGGCTCA
76682333 TTTCTGTTCT
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 17 0.43
46 23 0.57
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.31
Consensus pattern (44 bp):
TCCTGTCTCCAAAGCCACATATAATATGGACTTACATGGCTCAA
Found at i:76685093 original size:17 final size:19
Alignment explanation
Indices: 76685073--76685109 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
76685063 TTTATAATTT
76685073 TGTATA-TTAT-TTTTAAA
1 TGTATATTTATATTTTAAA
76685090 TGTATATTTATATTTTAAA
1 TGTATATTTATATTTTAAA
76685109 T
1 T
76685110 ATGTGATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
TGTATATTTATATTTTAAA
Found at i:76687993 original size:26 final size:26
Alignment explanation
Indices: 76687952--76688035 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 26
76687942 CATGAAATTC
*
76687952 TTATCATGAAATATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
*
76687978 TTATCATGTAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
76688004 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
76688030 TTATCA
1 TTATCA
76688036 ATTTGTATCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.36
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:76704757 original size:15 final size:14
Alignment explanation
Indices: 76704728--76704754 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
76704718 AAAACTGCCT
76704728 TTTTTTTTCTTTTC
1 TTTTTTTTCTTTTC
76704742 TTTTTTTTCTTTT
1 TTTTTTTTCTTTT
76704755 TCTGTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (14 bp):
TTTTTTTTCTTTTC
Found at i:76715661 original size:46 final size:46
Alignment explanation
Indices: 76715609--76715968 Score: 497
Period size: 46 Copynumber: 7.8 Consensus size: 46
76715599 AGTGTGCTCT
* *
76715609 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76715655 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76715701 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
76715747 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
76715793 GTGATATTAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
76715839 CTGACATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** * * *
76715885 ATGACGGGAAAATGAATAAGACTATGGTAGAAAGATACCATGGCAAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
76715932 ATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
76715969 TATGACATCA
Statistics
Matches: 291, Mismatches: 22, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 251 0.86
47 40 0.14
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:76719520 original size:25 final size:25
Alignment explanation
Indices: 76719441--76719531 Score: 83
Period size: 25 Copynumber: 3.6 Consensus size: 25
76719431 GCCATATAAC
* * * *
76719441 GGGAATCTCATGTGAGCTAAGTAAT
1 GGGAAGCTCATGAGAGCCAAGTATT
* * * * *
76719466 GGGAAGTTCTTGCGAGCCAAATATC
1 GGGAAGCTCATGAGAGCCAAGTATT
*
76719491 AGGAAGCTCATGAGAGCCAAGTATT
1 GGGAAGCTCATGAGAGCCAAGTATT
*
76719516 GGGAAGCTCAAGAGAG
1 GGGAAGCTCATGAGAG
76719532 TTGTGGTGTG
Statistics
Matches: 50, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.21
Consensus pattern (25 bp):
GGGAAGCTCATGAGAGCCAAGTATT
Found at i:76721178 original size:18 final size:19
Alignment explanation
Indices: 76721133--76721185 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
76721123 TACTTTTATT
76721133 ATTTAA-AAACTAAAAATGC
1 ATTTAATAAA-TAAAAATGC
76721152 ATTTAATAAATAAAAATG-
1 ATTTAATAAATAAAAATGC
* *
76721170 TTTTTATAAATAAAAA
1 ATTTAATAAATAAAAA
76721186 AGACAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
18 14 0.45
19 14 0.45
20 3 0.10
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.34
Consensus pattern (19 bp):
ATTTAATAAATAAAAATGC
Found at i:76721429 original size:20 final size:22
Alignment explanation
Indices: 76721404--76721444 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
76721394 TTATTTTTAA
76721404 TAATTTAA-TAT-TTATATTTT
1 TAATTTAATTATATTATATTTT
76721424 TAATTTAATTATATTATATTT
1 TAATTTAATTATATTATATTT
76721445 ATTATACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.42
21 3 0.16
22 8 0.42
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
TAATTTAATTATATTATATTTT
Found at i:76721437 original size:23 final size:22
Alignment explanation
Indices: 76721395--76721444 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 22
76721385 TTGGATAATT
76721395 TATTTTTAATAATTTAATATTTA
1 TATTTTTAATAATTTAATA-TTA
76721418 TATTTTTAATTTAA-TT-ATATTA
1 TATTTTTAA--TAATTTAATATTA
76721440 TATTT
1 TATTT
76721445 ATTATACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 8 0.32
23 12 0.48
24 2 0.08
25 3 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TATTTTTAATAATTTAATATTA
Found at i:76722370 original size:30 final size:28
Alignment explanation
Indices: 76722336--76722394 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 28
76722326 GGCTTTGTAA
76722336 TACAAGTTTTTTTAACATATTAATAATTCT
1 TACAAG-TTTTTT-ACATATTAATAATTCT
*
76722366 TACAAGTTTTTTATATATTAATAATTCT
1 TACAAGTTTTTTACATATTAATAATTCT
76722394 T
1 T
76722395 TTTTAAACGA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 16 0.57
29 6 0.21
30 6 0.21
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (28 bp):
TACAAGTTTTTTACATATTAATAATTCT
Found at i:76723516 original size:12 final size:12
Alignment explanation
Indices: 76723499--76723531 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
76723489 CAGCTCGCCC
76723499 ATATTAATTTTT
1 ATATTAATTTTT
*
76723511 ATATTATTTTTT
1 ATATTAATTTTT
76723523 ATA-TAATTT
1 ATATTAATTT
76723532 AAAATATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:76723691 original size:30 final size:30
Alignment explanation
Indices: 76723655--76723716 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
76723645 CTTCAGAATA
76723655 AAATGTCTCTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
*
76723685 AAATGTCTTTAAAATAATAACAAAATTAAC
1 AAATGTCTCTAAAATAATAACAAAATTAAC
76723715 AA
1 AA
76723717 TAAAATAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.58, C:0.11, G:0.03, T:0.27
Consensus pattern (30 bp):
AAATGTCTCTAAAATAATAACAAAATTAAC
Found at i:76723771 original size:22 final size:22
Alignment explanation
Indices: 76723746--76723787 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
76723736 TATCTAAATA
76723746 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
76723768 ATAATAGTAAAATGGTAGCA
1 ATAACAATAAAATAGTAGCA
76723788 GAATAGGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.55, C:0.10, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:76727429 original size:21 final size:21
Alignment explanation
Indices: 76727391--76727430 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
76727381 GCTCAAAGCT
*
76727391 TTAATATAATATGTGTATAAA
1 TTAATATAATATGCGTATAAA
76727412 TTAATTATAATAT-CGTATA
1 TTAA-TATAATATGCGTATA
76727431 TTTGTCATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (21 bp):
TTAATATAATATGCGTATAAA
Found at i:76736589 original size:3 final size:3
Alignment explanation
Indices: 76736581--76736612 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
76736571 TATACTTCAA
76736581 TCT TCT TCT T-T T-T TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT T
76736613 TTCCGTGAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (3 bp):
TCT
Found at i:76747306 original size:9 final size:9
Alignment explanation
Indices: 76747292--76747332 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
76747282 TTCTTATATT
76747292 TTTTTTTAC
1 TTTTTTTAC
76747301 TTTTTTTAC
1 TTTTTTTAC
**
76747310 TTTTTGAAC
1 TTTTTTTAC
76747319 -TTTTTTA-
1 TTTTTTTAC
76747326 TTTTTTT
1 TTTTTTT
76747333 TCTTATATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
8 11 0.41
9 16 0.59
ACGTcount: A:0.12, C:0.07, G:0.02, T:0.78
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:76747415 original size:36 final size:35
Alignment explanation
Indices: 76747349--76747421 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 35
76747339 ATTTTGTCTC
76747349 TTTCTTAGATTTTTTTCTTTTTAAGTTTTATATTAT
1 TTTCTTAGATTTTTTTCTTTTTAAG-TTTATATTAT
76747385 TTTCTTA-ATTTATTTTACTTATTTAA-TTTATATTAT
1 TTTCTTAGATTT-TTTT-CTT-TTTAAGTTTATATTAT
76747421 T
1 T
76747422 AATTTTAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
35 4 0.12
36 22 0.65
37 3 0.09
38 5 0.15
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.68
Consensus pattern (35 bp):
TTTCTTAGATTTTTTTCTTTTTAAGTTTATATTAT
Found at i:76747426 original size:18 final size:17
Alignment explanation
Indices: 76747375--76747422 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
76747365 CTTTTTAAGT
*
76747375 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
*
76747393 TTTATTTTACTTATTTAA
1 TTTATATTA-TTATTTAA
76747411 TTTATATTATTA
1 TTTATATTATTA
76747423 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:76747499 original size:23 final size:24
Alignment explanation
Indices: 76747411--76747504 Score: 67
Period size: 21 Copynumber: 4.1 Consensus size: 24
76747401 ACTTATTTAA
* *
76747411 TTTATATTATTAATTTTAAAAAAAT
1 TTTATATTATT-ATTTTTAAAATAT
* * *
76747436 TGTA-A-TA-TATATTTAAAATGT
1 TTTATATTATTATTTTTAAAATAT
*
76747457 TTTATAATATT-TTTTT-AAAT-T
1 TTTATATTATTATTTTTAAAATAT
76747478 TTTA-ATTATTATTTTTAAAAATAT
1 TTTATATTATTATTTTT-AAAATAT
76747502 TTT
1 TTT
76747505 TTAACTTTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 15
0.70 0.10 0.19
Matches are distributed among these distances:
20 5 0.09
21 22 0.41
22 6 0.11
23 12 0.22
24 6 0.11
25 3 0.06
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (24 bp):
TTTATATTATTATTTTTAAAATAT
Found at i:76747561 original size:37 final size:36
Alignment explanation
Indices: 76747520--76747590 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
76747510 TTTATATATA
* *
76747520 TATTTGTGAAATT-ATTTATTTATAAATTTTAAAAATG
1 TATTTGTCAAATTAATTT-TTTA-AAATTTAAAAAATG
*
76747557 TATTTTTCAAATTAATTTTTTAAAATTTAAAAAA
1 TATTTGTCAAATTAATTTTTTAAAATTTAAAAAA
76747591 AAATAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 11 0.37
37 15 0.50
38 4 0.13
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (36 bp):
TATTTGTCAAATTAATTTTTTAAAATTTAAAAAATG
Found at i:76748037 original size:21 final size:23
Alignment explanation
Indices: 76748012--76748055 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
76748002 GTATATTTCT
76748012 TAAAT-TAATTTTTGAAA-ATTA
1 TAAATATAATTTTTGAAATATTA
* *
76748033 TAAATATTATTTTTTAAATATTA
1 TAAATATAATTTTTGAAATATTA
76748056 ACCATATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (23 bp):
TAAATATAATTTTTGAAATATTA
Found at i:76748044 original size:35 final size:36
Alignment explanation
Indices: 76747984--76748051 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
76747974 GTTTTATATT
* * *
76747984 TTTTTTAAAATTTTAAATGTATATTTCTTAAATTAA
1 TTTTTGAAAATTATAAATATATATTTCTTAAATTAA
*
76748020 TTTTTGAAAATTATAAATAT-TATTTTTTAAAT
1 TTTTTGAAAATTATAAATATATATTTCTTAAAT
76748052 ATTAACCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 11 0.39
36 17 0.61
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (36 bp):
TTTTTGAAAATTATAAATATATATTTCTTAAATTAA
Found at i:76748271 original size:10 final size:9
Alignment explanation
Indices: 76748259--76748347 Score: 63
Period size: 10 Copynumber: 9.4 Consensus size: 9
76748249 TAAATTTTAA
76748259 AAAATATTT
1 AAAATATTT
76748268 AAAATCATTT
1 AAAAT-ATTT
*
76748278 AAAATATTAA
1 AAAATATT-T
76748288 AAAATATTT
1 AAAATATTT
*
76748297 TAAATCATTT
1 AAAAT-ATTT
* *
76748307 TAAATGTTTT
1 AAAAT-ATTT
* *
76748317 ATAATATTA
1 AAAATATTT
76748326 AAAATATATT
1 AAAATAT-TT
*
76748336 -TAATATTT
1 AAAATATTT
76748344 AAAA
1 AAAA
76748348 AATAATTTGA
Statistics
Matches: 62, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
8 2 0.03
9 27 0.44
10 33 0.53
ACGTcount: A:0.53, C:0.02, G:0.01, T:0.44
Consensus pattern (9 bp):
AAAATATTT
Found at i:76748272 original size:19 final size:19
Alignment explanation
Indices: 76748259--76748363 Score: 72
Period size: 19 Copynumber: 5.4 Consensus size: 19
76748249 TAAATTTTAA
*
76748259 AAAATATT-TAAAATCATTT
1 AAAATATTAAAAAAT-ATTT
76748278 AAAATATTAAAAAATATTT
1 AAAATATTAAAAAATATTT
* ** *
76748297 TAAATCATT-TTAAATGTTTT
1 AAAAT-ATTAAAAAAT-ATTT
*
76748317 ATAATATTAAAAATATATTT
1 AAAATATTAAAAA-ATATTT
*
76748337 AATAT-TTAAAAAATAATTT
1 AAAATATTAAAAAAT-ATTT
76748356 GAAAATAT
1 -AAAATAT
76748364 ATTTTTAATA
Statistics
Matches: 65, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
18 2 0.03
19 34 0.52
20 26 0.40
21 3 0.05
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
AAAATATTAAAAAATATTT
Found at i:76748282 original size:29 final size:29
Alignment explanation
Indices: 76748250--76748361 Score: 102
Period size: 29 Copynumber: 3.8 Consensus size: 29
76748240 AATTCTATGT
76748250 AAATTTTAAAAAATATTTAAAATCATTTA
1 AAATTTTAAAAAATATTTAAAATCATTTA
* * *
76748279 AAATATTAAAAAATATTTTAAATCATTTT
1 AAATTTTAAAAAATATTTAAAATCATTTA
* * * *
76748308 AAATGTTT-TATAATATTAAAAATATATTTA
1 AAAT-TTTAAAAAATATTTAAAAT-CATTTA
*
76748338 ATA-TTTAAAAAATAATTTGAAAAT
1 AAATTTTAAAAAAT-ATTT-AAAAT
76748362 ATATTTTTAA
Statistics
Matches: 64, Mismatches: 14, Indels: 8
0.74 0.16 0.09
Matches are distributed among these distances:
28 3 0.05
29 45 0.70
30 11 0.17
31 5 0.08
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (29 bp):
AAATTTTAAAAAATATTTAAAATCATTTA
Found at i:76748364 original size:31 final size:34
Alignment explanation
Indices: 76748317--76748406 Score: 98
Period size: 35 Copynumber: 2.7 Consensus size: 34
76748307 TAAATGTTTT
76748317 ATAATATTAAAAATATA-TTTAATATTTA-AAAA
1 ATAATATTAAAAATATATTTTAATATTTATAAAA
*
76748349 ATAAT-TTGAAAATATATTTTTAATATTTATAAAAA
1 ATAATATTAAAAATATA-TTTTAATATTTAT-AAAA
* *
76748384 ATTATATTATAAAACAT-TTTTAA
1 ATAATATTA-AAAATATATTTTAA
76748407 AAAGTACATT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
31 10 0.21
32 5 0.10
33 11 0.23
35 14 0.29
36 2 0.04
37 6 0.12
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (34 bp):
ATAATATTAAAAATATATTTTAATATTTATAAAA
Found at i:76751905 original size:30 final size:30
Alignment explanation
Indices: 76751853--76751945 Score: 132
Period size: 30 Copynumber: 3.1 Consensus size: 30
76751843 GGTCAAATGG
* * * *
76751853 ACTCGAACCGCCTATATTCGGGTGATATGA
1 ACTCGAACCACCCATGTCCGGGTGATATGA
*
76751883 ACTTGAACCACCCATGTCCGGGTGATATGA
1 ACTCGAACCACCCATGTCCGGGTGATATGA
*
76751913 ACTCGAACCACCCATGTCCGGGTTATATGA
1 ACTCGAACCACCCATGTCCGGGTGATATGA
76751943 ACT
1 ACT
76751946 GCTCTGGGAC
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 56 1.00
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.25
Consensus pattern (30 bp):
ACTCGAACCACCCATGTCCGGGTGATATGA
Found at i:76757080 original size:5 final size:5
Alignment explanation
Indices: 76757054--76757111 Score: 62
Period size: 5 Copynumber: 10.8 Consensus size: 5
76757044 ATGTGTTAAA
* *
76757054 ATATAT ATATT AAATT ATTATT ATATT ATAGT ATATT ATATT ATAAATT
1 ATAT-T ATATT ATATT A-TATT ATATT ATATT ATATT ATATT AT--ATT
76757103 ATATT ATAT
1 ATATT ATAT
76757112 AAATAAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
5 32 0.71
6 8 0.18
7 5 0.11
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (5 bp):
ATATT
Found at i:76758449 original size:18 final size:19
Alignment explanation
Indices: 76758426--76758464 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
76758416 ATATATAGAT
76758426 ATATATATTGAATA-TTGA
1 ATATATATTGAATATTTGA
*
76758444 ATATATATTGATTATTTGA
1 ATATATATTGAATATTTGA
76758463 AT
1 AT
76758465 TGAATTGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (19 bp):
ATATATATTGAATATTTGA
Found at i:76758814 original size:39 final size:39
Alignment explanation
Indices: 76758704--76758838 Score: 103
Period size: 39 Copynumber: 3.4 Consensus size: 39
76758694 GACCTCGAGT
* * * * *
76758704 CGATAAGACACTGGGTGTCACTATATTTCTTCGGATAGATT
1 CGATGAGACACTGGGTGTCA-AATATTACTTCGGCTAG-TC
** ** * *
76758745 CGATGAGGTACTGGGTACCAACT-TTACTTCGGCTAGGC
1 CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
* *
76758783 CGATGAGACACTGGGTGTCAAATATTGCTTCGAACTA-TC
1 CGATGAGACACTGGGTGTCAAATATTACTTCG-GCTAGTC
*
76758822 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
76758839 CCATATTGGT
Statistics
Matches: 72, Mismatches: 20, Indels: 6
0.73 0.20 0.06
Matches are distributed among these distances:
38 18 0.25
39 35 0.49
40 4 0.06
41 15 0.21
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (39 bp):
CGATGAGACACTGGGTGTCAAATATTACTTCGGCTAGTC
Found at i:76758982 original size:18 final size:19
Alignment explanation
Indices: 76758961--76759001 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
76758951 AATGAAATGA
76758961 GAAATTGA-AT-TGAGAATT
1 GAAATTGAGATATGAG-ATT
76758979 GAAATTGAGATATGAGATT
1 GAAATTGAGATATGAGATT
76758998 GAAA
1 GAAA
76759002 ACATGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 9 0.43
20 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.29
Consensus pattern (19 bp):
GAAATTGAGATATGAGATT
Found at i:76760570 original size:26 final size:27
Alignment explanation
Indices: 76760530--76760595 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 27
76760520 TTTAAAAAAA
* *
76760530 TATTTAAAATATTATGATTTCTTATAT-
1 TATTTAAAA-ATTATAATTTCTTAAATG
*
76760557 TA-TTAAAAAGTTATAATTTTTTAAATG
1 TATTTAAAAA-TTATAATTTCTTAAATG
76760584 TATTTAAAAATT
1 TATTTAAAAATT
76760596 GTATTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 1 0.03
26 19 0.58
27 6 0.18
28 7 0.21
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.52
Consensus pattern (27 bp):
TATTTAAAAATTATAATTTCTTAAATG
Found at i:76760769 original size:22 final size:22
Alignment explanation
Indices: 76760745--76760785 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
76760735 CAAAAAAAGA
76760745 AAAAAAATATTTA-ATATTTAT
1 AAAAAAATATTTATATATTTAT
*
76760766 AAAATAATATTTATATATTT
1 AAAAAAATATTTATATATTT
76760786 TTTTAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
AAAAAAATATTTATATATTTAT
Found at i:76761140 original size:23 final size:23
Alignment explanation
Indices: 76761076--76761156 Score: 78
Period size: 22 Copynumber: 3.6 Consensus size: 23
76761066 ATAAAGTTAA
*
76761076 AAAATATTTTCAAAAATA-ATAAT
1 AAAATATTTT-AAAAATATATTAT
* *
76761099 TAAAT-TTTTAAAAAAATATTAT
1 AAAATATTTTAAAAATATATTAT
*
76761121 AAAATATTTTAAATATATATTA-
1 AAAATATTTTAAAAATATATTAT
* *
76761143 CAAATTTTTTAAAA
1 AAAATATTTTAAAA
76761157 TTAATAATAT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
21 6 0.13
22 23 0.49
23 18 0.38
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (23 bp):
AAAATATTTTAAAAATATATTAT
Found at i:76761170 original size:23 final size:22
Alignment explanation
Indices: 76761088--76761171 Score: 75
Period size: 23 Copynumber: 3.8 Consensus size: 22
76761078 AATATTTTCA
76761088 AAAATAATAAT-TAAA-TTTTT
1 AAAATAATAATATAAATTTTTT
* * *
76761108 AAAAAAATATTATAAAATATTTT
1 AAAATAATAATAT-AAATTTTTT
* *
76761131 -AAATATATATTACAAATTTTTT
1 AAAATA-ATAATATAAATTTTTT
76761153 AAAATTAATAATATAAATT
1 AAAA-TAATAATATAAATT
76761172 AAATAAGAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
20 9 0.18
21 1 0.02
22 15 0.30
23 23 0.46
24 2 0.04
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATAATAATATAAATTTTTT
Found at i:76761373 original size:11 final size:11
Alignment explanation
Indices: 76761359--76761383 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
76761349 TTTTTCTAAA
76761359 TTTTTTAGTAT
1 TTTTTTAGTAT
76761370 TTTTTTAGTAT
1 TTTTTTAGTAT
76761381 TTT
1 TTT
76761384 ATATTGGTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTTTTAGTAT
Found at i:76768695 original size:38 final size:38
Alignment explanation
Indices: 76768644--76768727 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
76768634 ATTTGATGTG
* * * *
76768644 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGATAAATCCCGCAAGCCTAGTGCTGGTATTA
76768682 TATCCGGGATAAATCCCGCAAGCCTAGTGCTGGTATTA
1 TATCCGGGATAAATCCCGCAAGCCTAGTGCTGGTATTA
*
76768720 TATTCGGG
1 TATCCGGG
76768728 CCTTCGTGCC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (38 bp):
TATCCGGGATAAATCCCGCAAGCCTAGTGCTGGTATTA
Found at i:76768887 original size:43 final size:43
Alignment explanation
Indices: 76768720--76768874 Score: 274
Period size: 43 Copynumber: 3.6 Consensus size: 43
76768710 GCTGGTATTA
*
76768720 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
76768763 TATTTGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
76768806 TATTCGGGCCTTCGTGCCTAGCAGGTTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
76768849 TATTCGGGACTTCGTGCCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
76768875 GTAATGCCGG
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 106 1.00
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:76769632 original size:443 final size:443
Alignment explanation
Indices: 76768864--76769773 Score: 1696
Period size: 443 Copynumber: 2.1 Consensus size: 443
76768854 GGGACTTCGT
76768864 GCCTAGCAGGCGTAATGCCGGTGAAAAGATATGTTACGTGAATTCGGTGTTCCTTGTAAGATAAG
1 GCCTAGCAGGCGTAATGCCGGTGAAAAGATATGTTACGTGAATTCGGTGTTCCTTGTAAGATAAG
76768929 GGTTTAGCCGAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATATGGCCTAATGACA
66 GGTTTAGCCGAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATATGGCCTAATGACA
*
76768994 AGTATAACATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTTTGAAATGAATGT
131 AGTATAAAATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTTTGAAATGAATGT
76769059 GAGTGAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTTT
196 GAGTGAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTTT
76769124 GAGATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGGA
261 GAGATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGGA
* * *
76769189 ACTTGTTGTTTTGATTATTCGAGCCTTTGAGCTTAGCAGACTATAATGTCAGTGAGATACTATTC
326 ACTTGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGTGAGATACTATTC
*
76769254 GGGCTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGATATCGGGCCTCGA
391 GGGCTTTCGAGCCTAGCAGACTATAATGCCGATGAAATGATATCGGGCCTCGA
* *
76769307 GTCTAGCAAGCGTAATGCCGGT-AAAATGATATGTTACGTGAATTCGGTGTTCCTTGTAAGATAA
1 GCCTAGCAGGCGTAATGCCGGTGAAAA-GATATGTTACGTGAATTCGGTGTTCCTTGTAAGATAA
*
76769371 GGGTTTAGCCGAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATATGGCCTAATGGC
65 GGGTTTAGCCGAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATATGGCCTAATGAC
*
76769436 AAGTATAAAATGTTTGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTTTGAAATGAATG
130 AAGTATAAAATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTTTGAAATGAATG
*
76769501 TGAGTGAAATGTTATGCCTAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTT
195 TGAGTGAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTT
76769566 TGAGATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGG
260 TGAGATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGG
76769631 AACTTGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGTGAGATACTATT
325 AACTTGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGTGAGATACTATT
*
76769696 CGGGCTTTCGAGCCTAGCAGACTATAATGCCGGTGAAATGATATCGGGCCTCGA
390 CGGGCTTTCGAGCCTAGCAGACTATAATGCCGATGAAATGATATCGGGCCTCGA
*
76769750 GCCTAGCAGGCGAAATGCCGGTGA
1 GCCTAGCAGGCGTAATGCCGGTGA
76769774 TTTGAGAAAA
Statistics
Matches: 451, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
442 4 0.01
443 446 0.99
444 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (443 bp):
GCCTAGCAGGCGTAATGCCGGTGAAAAGATATGTTACGTGAATTCGGTGTTCCTTGTAAGATAAG
GGTTTAGCCGAATGTTAAAGATGAAATGATAGTGTATTGTATCATGCTTATATGGCCTAATGACA
AGTATAAAATGTTGGTAAATATGCAATGTGCTTTTATAATCGAACGATAAGTTTGAAATGAATGT
GAGTGAAATGTTATGCATAAGCTATCAAATGCTAAGTGTGAAAATGAGATGAAAGAAAAGTGTTT
GAGATGTATAATTACATACGTTCGAATGATGTTAGTACTTAATTGATATGAATATGTTATATGGA
ACTTGTTGATTTGATTATTCGAGCCTTTGAGCTTAGCAAACTATAATGCCAGTGAGATACTATTC
GGGCTTTCGAGCCTAGCAGACTATAATGCCGATGAAATGATATCGGGCCTCGA
Found at i:76769720 original size:45 final size:45
Alignment explanation
Indices: 76769647--76769758 Score: 124
Period size: 45 Copynumber: 2.5 Consensus size: 45
76769637 TTGATTTGAT
* * * *
76769647 TATTCGAGCCTTT-GAGCTTAGCAAACTATAATGCCAGTGAGAT-A
1 TATTCG-GGCTTTCGAGCCTAGCAGACTATAATGCCAGTGAAATGA
*
76769691 CTATTCGGGCTTTCGAGCCTAGCAGACTATAATGCCGGTGAAATGA
1 -TATTCGGGCTTTCGAGCCTAGCAGACTATAATGCCAGTGAAATGA
*
76769737 TA-TCGGGC-CTCGAGCCTAGCAG
1 TATTCGGGCTTTCGAGCCTAGCAG
76769759 GCGAAATGCC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
43 13 0.22
44 11 0.19
45 34 0.58
46 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (45 bp):
TATTCGGGCTTTCGAGCCTAGCAGACTATAATGCCAGTGAAATGA
Found at i:76771222 original size:18 final size:18
Alignment explanation
Indices: 76771199--76771237 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
76771189 TAATTGTATT
*
76771199 TAAAACTTAATTTAAAAA
1 TAAAACATAATTTAAAAA
* *
76771217 TAAAACATATTTTAAATA
1 TAAAACATAATTTAAAAA
76771235 TAA
1 TAA
76771238 TTATATATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (18 bp):
TAAAACATAATTTAAAAA
Found at i:76778698 original size:28 final size:27
Alignment explanation
Indices: 76778666--76778724 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 27
76778656 ATAAAAAATA
76778666 TAAATACAATATAAATATAT-G-AATTTCT
1 TAAATA-AA-ATAAATATATAGCAATTT-T
*
76778694 TAAATAAAATAAGTATATAGCAATTTT
1 TAAATAAAATAAATATATAGCAATTTT
76778721 TAAA
1 TAAA
76778725 GGGAAAAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 9 0.32
27 8 0.29
28 11 0.39
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.37
Consensus pattern (27 bp):
TAAATAAAATAAATATATAGCAATTTT
Found at i:76779328 original size:29 final size:29
Alignment explanation
Indices: 76779257--76779328 Score: 69
Period size: 29 Copynumber: 2.5 Consensus size: 29
76779247 CAAATAATTT
* *
76779257 ATAATAAAATTACACTTTACCCCTTAAAT
1 ATAATAAAATTATACTTTACCCCTTAAAA
*
76779286 ATGAA-AAACA-TATA-TTTAATCCCTTAAAA
1 AT-AATAAA-ATTATACTTT-ACCCCTTAAAA
76779315 ATAATAAAATTATA
1 ATAATAAAATTATA
76779329 AATTAATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
28 6 0.17
29 26 0.74
30 3 0.09
ACGTcount: A:0.51, C:0.14, G:0.01, T:0.33
Consensus pattern (29 bp):
ATAATAAAATTATACTTTACCCCTTAAAA
Found at i:76779686 original size:48 final size:47
Alignment explanation
Indices: 76779634--76779725 Score: 121
Period size: 47 Copynumber: 1.9 Consensus size: 47
76779624 TACATACCCT
* *
76779634 AATCCAACCGAATATGAAGAAAAAATCGTTGAATTTAATTAATATTCC
1 AATCCAACCGAAAATG-AGAAAAAATAGTTGAATTTAATTAATATTCC
* ** *
76779682 AATCCAACCTAAAATGAGAGCAAATAGTTGGATTTAATTAATAT
1 AATCCAACCGAAAATGAGAAAAAATAGTTGAATTTAATTAATAT
76779726 ATTTTATTAT
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
47 24 0.63
48 14 0.37
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (47 bp):
AATCCAACCGAAAATGAGAAAAAATAGTTGAATTTAATTAATATTCC
Found at i:76789514 original size:5 final size:5
Alignment explanation
Indices: 76789488--76789547 Score: 92
Period size: 5 Copynumber: 12.8 Consensus size: 5
76789478 AACCAAAGAT
76789488 TAAA- TAAA- TAAA- TAAA- TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC
1 TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC TAAAC
76789534 TAAAC TAAAC TAAA
1 TAAAC TAAAC TAAA
76789548 GAACATTCAA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 16 0.29
5 39 0.71
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.22
Consensus pattern (5 bp):
TAAAC
Found at i:76805858 original size:30 final size:30
Alignment explanation
Indices: 76805822--76805884 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
76805812 CCGGGAAAGA
* *
76805822 ATGAAACATCCAACAATCCGATGAGTTGTT
1 ATGAAACATCCAACAACCCGATAAGTTGTT
76805852 ATGAAACATCCAACAACCCGATAAGTTGTT
1 ATGAAACATCCAACAACCCGATAAGTTGTT
76805882 ATG
1 ATG
76805885 TATGTGGCAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (30 bp):
ATGAAACATCCAACAACCCGATAAGTTGTT
Found at i:76808117 original size:8 final size:9
Alignment explanation
Indices: 76808091--76808123 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
76808081 TTAAAATTAT
*
76808091 TATATATTA
1 TATATTTTA
76808100 TATATTTTA
1 TATATTTTA
76808109 TAT-TTTTA
1 TATATTTTA
76808117 TATATTT
1 TATATTT
76808124 CTTTAATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TATATTTTA
Found at i:76808692 original size:89 final size:88
Alignment explanation
Indices: 76808556--76808818 Score: 431
Period size: 89 Copynumber: 3.0 Consensus size: 88
76808546 TTGAAAAACA
* *
76808556 ACATTGTCCTAAGATAAGATAAAGCC--AATAAGCTACGAACATTTTCACTTGGAGTTTAAACAG
1 ACATTGTCCTAAGATAAGATAAAGCCATAACAAGCTACGAACATTTTCACTTGGATTTTAAACAG
*
76808619 GCTTTTCAGACAACAACAGGGAT
66 GCTTTTCAGATAACAACAGGGAT
* * *
76808642 ACATTGTCCTCACATAAGATAAAGCCAGTAACAAACTACGAACATTTTCACTTGGATTTTAAACA
1 ACATTGTCCTAAGATAAGATAAAGCCA-TAACAAGCTACGAACATTTTCACTTGGATTTTAAACA
76808707 GGCTTTTCAGATAACAACAGGGAT
65 GGCTTTTCAGATAACAACAGGGAT
*
76808731 ACATTGTCCTAAGAGAAGATAAAGCCATTAACAAGCTACGAACATTTTCACTTGGATTTTAAACA
1 ACATTGTCCTAAGATAAGATAAAGCCA-TAACAAGCTACGAACATTTTCACTTGGATTTTAAACA
76808796 GGCTTTTCAGATAACAACAGGGA
65 GGCTTTTCAGATAACAACAGGGA
76808819 CTGCTTGCAA
Statistics
Matches: 163, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
86 24 0.15
89 139 0.85
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (88 bp):
ACATTGTCCTAAGATAAGATAAAGCCATAACAAGCTACGAACATTTTCACTTGGATTTTAAACAG
GCTTTTCAGATAACAACAGGGAT
Found at i:76810993 original size:59 final size:59
Alignment explanation
Indices: 76810895--76811029 Score: 161
Period size: 59 Copynumber: 2.3 Consensus size: 59
76810885 TTTATCTTGA
* * *
76810895 AATTTAATTTTT-TT-AAGTTGGATTTTAAATTTTAAAATTGTTATCACATTATGGTCTG
1 AATTT-ATTTTTATTCAAGTTGGATCTTAAATTTGAAAATTGTTATCACATTAGGGTCTG
* * *
76810953 AATTTATTTTTATTCAAGTTAGGA-CTTAAATTTGACAATTGTTATTACATTAGGGTTTG
1 AATTTATTTTTATTCAAGTT-GGATCTTAAATTTGAAAATTGTTATCACATTAGGGTCTG
*
76811012 AATTT-TTTTTATCCAAGT
1 AATTTATTTTTATTCAAGT
76811030 AGCCTTTGAA
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
57 6 0.09
58 19 0.28
59 39 0.58
60 3 0.04
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (59 bp):
AATTTATTTTTATTCAAGTTGGATCTTAAATTTGAAAATTGTTATCACATTAGGGTCTG
Found at i:76812709 original size:46 final size:46
Alignment explanation
Indices: 76812659--76812834 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
76812649 TGGTTGAGCA
76812659 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
76812705 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
76812750 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
76812798 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
76812835 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 61 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:76812815 original size:93 final size:93
Alignment explanation
Indices: 76812656--76812827 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
76812646 GGATGGTTGA
* * *
76812656 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
76812721 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
76812749 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
76812814 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
76812828 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:76819323 original size:6 final size:6
Alignment explanation
Indices: 76819308--76819347 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
76819298 AATCTTGATT
* * *
76819308 TTGTTA TTGTGG TTGTGG TTGTGA TTGTGA TTGTGA TTGT
1 TTGTGA TTGTGA TTGTGA TTGTGA TTGTGA TTGTGA TTGT
76819348 TTTGCAATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.10, C:0.00, G:0.35, T:0.55
Consensus pattern (6 bp):
TTGTGA
Found at i:76821227 original size:15 final size:17
Alignment explanation
Indices: 76821194--76821230 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
76821184 CATATAAGTG
76821194 TTAAATAAGTATTTGTTA
1 TTAAATAAG-ATTTGTTA
76821212 TTAAATAA-ATTT-TTA
1 TTAAATAAGATTTGTTA
76821227 TTAA
1 TTAA
76821231 TAGATATCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 4 0.21
18 8 0.42
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TTAAATAAGATTTGTTA
Found at i:76821350 original size:19 final size:19
Alignment explanation
Indices: 76821328--76821364 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
76821318 GAAACAGGGG
*
76821328 AAGGAAAGAAGGAAAAAGA
1 AAGGAAAGAAAGAAAAAGA
76821347 AAGGAAAGAAAGAAAAAG
1 AAGGAAAGAAAGAAAAAG
76821365 GAAAAATTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (19 bp):
AAGGAAAGAAAGAAAAAGA
Found at i:76822461 original size:51 final size:54
Alignment explanation
Indices: 76822381--76822490 Score: 145
Period size: 51 Copynumber: 2.1 Consensus size: 54
76822371 TCACCTTATC
* * *
76822381 GTTACTGTTCCGGATTCGTTCAGAAGAGGTA-T-TCTGTACCT-TATTGTTACT
1 GTTACTGTTCCGGATTCGATCAGAAGAGGTACTCTATGTACCTCTACTGTTACT
* * *
76822432 GTTACTGTTCCGGATTTGATCCGATGAGGTACTCTATGTACCTCTACTGTTACT
1 GTTACTGTTCCGGATTCGATCAGAAGAGGTACTCTATGTACCTCTACTGTTACT
76822486 GTTAC
1 GTTAC
76822491 CGTTACTATT
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
51 27 0.54
52 1 0.02
53 8 0.16
54 14 0.28
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (54 bp):
GTTACTGTTCCGGATTCGATCAGAAGAGGTACTCTATGTACCTCTACTGTTACT
Found at i:76822684 original size:54 final size:54
Alignment explanation
Indices: 76822615--76822786 Score: 265
Period size: 54 Copynumber: 3.2 Consensus size: 54
76822605 AAAATAAAGG
*
76822615 TACTGAATAACTGACTGCT-ACTAAATAAATGACTGTTACTGAATAACTGATTAT
1 TACTGAATAATTGACTG-TGACTAAATAAATGACTGTTACTGAATAACTGATTAT
* *
76822669 TACTGAATAATTGACTGTGACTTAATAAATGACTGTTACTGAATAACTTATTAT
1 TACTGAATAATTGACTGTGACTAAATAAATGACTGTTACTGAATAACTGATTAT
* * * *
76822723 TACTAAATAATTGACTGTGACTGAATAAATGACTGTTACTAAATAAATGATTAT
1 TACTGAATAATTGACTGTGACTAAATAAATGACTGTTACTGAATAACTGATTAT
76822777 TACTGAATAA
1 TACTGAATAA
76822787 CTGATTAATA
Statistics
Matches: 108, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
53 1 0.01
54 107 0.99
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (54 bp):
TACTGAATAATTGACTGTGACTAAATAAATGACTGTTACTGAATAACTGATTAT
Found at i:76822793 original size:18 final size:18
Alignment explanation
Indices: 76822615--76822786 Score: 173
Period size: 18 Copynumber: 9.6 Consensus size: 18
76822605 AAAATAAAGG
* *
76822615 TACTGAATAACTGACTGC
1 TACTGAATAAATGACTGT
*
76822633 TACTAAATAAATGACTGT
1 TACTGAATAAATGACTGT
* * *
76822651 TACTGAATAACTGATTAT
1 TACTGAATAAATGACTGT
*
76822669 TACTGAATAATTGACTGT
1 TACTGAATAAATGACTGT
* *
76822687 GACTTAATAAATGACTGT
1 TACTGAATAAATGACTGT
* * * *
76822705 TACTGAATAACTTATTAT
1 TACTGAATAAATGACTGT
* *
76822723 TACTAAATAATTGACTGT
1 TACTGAATAAATGACTGT
*
76822741 GACTGAATAAATGACTGT
1 TACTGAATAAATGACTGT
* * *
76822759 TACTAAATAAATGATTAT
1 TACTGAATAAATGACTGT
76822777 TACTGAATAA
1 TACTGAATAA
76822787 CTGATTAATA
Statistics
Matches: 122, Mismatches: 32, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 122 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (18 bp):
TACTGAATAAATGACTGT
Found at i:76823141 original size:33 final size:33
Alignment explanation
Indices: 76823104--76823169 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
76823094 TATACTATTG
76823104 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
1 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
76823137 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
1 AGTTTATTATATGATTTTAAGAGTTTGTAATAT
76823170 TTTTCTTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (33 bp):
AGTTTATTATATGATTTTAAGAGTTTGTAATAT
Found at i:76825845 original size:32 final size:32
Alignment explanation
Indices: 76825803--76825864 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
76825793 ACTCGGATAA
76825803 TGTTCACAATTGTTTCTATTAAAAGTAGACAG
1 TGTTCACAATTGTTTCTATTAAAAGTAGACAG
*
76825835 TGTTCCCAATTGTTTCTATTAAAAGTAGAC
1 TGTTCACAATTGTTTCTATTAAAAGTAGAC
76825865 TCATAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (32 bp):
TGTTCACAATTGTTTCTATTAAAAGTAGACAG
Found at i:76828903 original size:46 final size:46
Alignment explanation
Indices: 76828851--76829031 Score: 326
Period size: 46 Copynumber: 3.9 Consensus size: 46
76828841 GTGTGCTCTC
*
76828851 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
76828897 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
76828943 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
* **
76828989 TGATATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
76829032 GCATGACAGA
Statistics
Matches: 131, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 131 1.00
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.24
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:76829057 original size:46 final size:46
Alignment explanation
Indices: 76828851--76829070 Score: 316
Period size: 46 Copynumber: 4.8 Consensus size: 46
76828841 GTGTGCTCTC
* *
76828851 TGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
76828897 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
*
76828943 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACG
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * *
76828989 TGATATAAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGCA
1 TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
* * * *
76829035 TGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 TGATATG-AAATGAGTAAGACCATGGTTGAAAGATAC
76829071 TATGACATCA
Statistics
Matches: 161, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 161 1.00
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACG
Found at i:76830005 original size:49 final size:51
Alignment explanation
Indices: 76829891--76830023 Score: 171
Period size: 49 Copynumber: 2.6 Consensus size: 51
76829881 GGGGTGTTAC
* * * * *
76829891 ACACGTAGTAGCCAGCACTTCGTGCTACACACGTGATCAAAGTTATCGGGT
1 ACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCCGGT
* * * *
76829942 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCGGT
1 ACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCCGGT
76829991 ACACGTAGTAGCCTGCACTTAGTACTACACACG
1 ACACGTAGTAGCCTGCACTTAGTACTACACACG
76830024 TGACCTCACA
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
49 38 0.54
50 3 0.04
51 29 0.41
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (51 bp):
ACACGTAGTAGCCTGCACTTAGTACTACACACGCGATCAAAGTTATCCGGT
Found at i:76832340 original size:22 final size:23
Alignment explanation
Indices: 76832315--76832360 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
76832305 CAGCCAAACC
76832315 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
76832337 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
76832360 A
1 A
76832361 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:76832366 original size:23 final size:23
Alignment explanation
Indices: 76832322--76832366 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
76832312 ACCAATTCAA
*
76832322 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
76832345 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
76832367 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:76835794 original size:41 final size:39
Alignment explanation
Indices: 76835749--76835835 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 39
76835739 AAATAGGTTT
*
76835749 TTAGCG-ACGTTTGAATGAAAAACGCCACTAAAGAACAAGCA
1 TTAGCGAACGTTTGAA--AAAAA-ACCACTAAAGAACAAGCA
* * *
76835790 TTAGCGACACTTTTTAAAAAAAACCACTAAAGAACGAGCA
1 TTAGCGA-ACGTTTGAAAAAAAACCACTAAAGAACAAGCA
76835830 TTAGCG
1 TTAGCG
76835836 GCGCTTTTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
40 22 0.55
41 11 0.28
43 7 0.17
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.20
Consensus pattern (39 bp):
TTAGCGAACGTTTGAAAAAAAACCACTAAAGAACAAGCA
Found at i:76838514 original size:22 final size:21
Alignment explanation
Indices: 76838458--76838514 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
76838448 GTTTACGGTA
* * *
76838458 TATGGTTAAGGGTTTAATGTT
1 TATGGTTAAGAGTTTAAGGAT
*
76838479 TATGAGTTATGAGTTTAAGGAT
1 TATG-GTTAAGAGTTTAAGGAT
76838501 TATGGTTTAAGAGT
1 TATGG-TTAAGAGT
76838515 GGTTTAAGGG
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 5 0.17
22 24 0.83
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (21 bp):
TATGGTTAAGAGTTTAAGGAT
Found at i:76838621 original size:22 final size:21
Alignment explanation
Indices: 76838589--76838629 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
76838579 ATTTTAAAAT
76838589 TTATAGTTTAGGGTTTAGAGA
1 TTATAGTTTAGGGTTTAGAGA
76838610 TTATGAGTTTAGGGTTTAGA
1 TTAT-AGTTTAGGGTTTAGA
76838630 TTAATTAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (21 bp):
TTATAGTTTAGGGTTTAGAGA
Found at i:76838746 original size:14 final size:14
Alignment explanation
Indices: 76838729--76838767 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
76838719 ATCATTATAG
76838729 TTTAGGGTTTATGA
1 TTTAGGGTTTATGA
*
76838743 TTTAGGGTATATGA
1 TTTAGGGTTTATGA
*
76838757 TTTAGAGTTTA
1 TTTAGGGTTTA
76838768 AAGTGTATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTATGA
Found at i:76838923 original size:32 final size:32
Alignment explanation
Indices: 76838877--76838947 Score: 126
Period size: 32 Copynumber: 2.2 Consensus size: 32
76838867 GGTTTACTTA
76838877 AGGA-TTAGACTTTATATATATTAAATGGTTT
1 AGGATTTAGACTTTATATATATTAAATGGTTT
*
76838908 AGGATTTAGGCTTTATATATATTAAATGGTTT
1 AGGATTTAGACTTTATATATATTAAATGGTTT
76838940 AGGATTTA
1 AGGATTTA
76838948 AAGTTTAGTT
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
31 4 0.11
32 34 0.89
ACGTcount: A:0.34, C:0.03, G:0.18, T:0.45
Consensus pattern (32 bp):
AGGATTTAGACTTTATATATATTAAATGGTTT
Found at i:76842350 original size:643 final size:643
Alignment explanation
Indices: 76841124--76842401 Score: 2430
Period size: 643 Copynumber: 2.0 Consensus size: 643
76841114 TCTTGCCGCA
*
76841124 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTTAG
1 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
* *
76841189 TCAAGTTTCCAAATGAGAAGTCTAGAAAGGCCCATTCTGCAGCCAAGTTCCCAAATAAGAAGCCT
66 TCAAGTTTCCAAACGAGAAGTCTAGAAAGGCCCATTCTACAGCCAAGTTCCCAAATAAGAAGCCT
*
76841254 GGAAACTGTCTATCTGCTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
131 GGAAACTGTCTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
76841319 AGACGTCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
196 AGACGTCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
*
76841384 CATTTACTTTCTTTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
261 CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
76841449 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
326 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
*
76841514 CCAGCTGAAATCCAACACTTTTTGAGGCCAGCCAGAGAATAAAAAAGATTGGGTTTTCTGTAGAT
391 CCAGCTGAAATCCAACACTTTTTGAGGCCAGCCAGAGAATAAAAAAGATTGGGTTTTCTATAGAT
*
76841579 CTGCTTTGTCTCTTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
456 CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
*
76841644 TTTTTAATAATTATATCTTTGACTTGCGTATGTGTTTTATTGTGTTGAAAGGTAAACTCGTATAC
521 TTTTTAATAATTATATCTTTGACTTGCGTATGTGTTTTATTATGTTGAAAGGTAAACTCGTATAC
76841709 TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTGCAAGTACT
586 TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTGCAAGTACT
76841767 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
1 GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
76841832 TCAAGTTTCCAAACGAGAAGTCTAGAAAGGCCCATTCTACAGCCAAGTTCCCAAATAAGAAGCCT
66 TCAAGTTTCCAAACGAGAAGTCTAGAAAGGCCCATTCTACAGCCAAGTTCCCAAATAAGAAGCCT
* *
76841897 GGAAACTTTGTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
131 GGAAACTGTCTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
76841962 AGACGTCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
196 AGACGTCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
76842027 CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
261 CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
*
76842092 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAATTGATTGTGGTTCTGCATGCAGTGG
326 TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
* *
76842157 CCAGCTGAAATCCAACACTTTTTGGGGCCAGCCAGAGAATAAAAAAGATTGGGTTTTCTATGGAT
391 CCAGCTGAAATCCAACACTTTTTGAGGCCAGCCAGAGAATAAAAAAGATTGGGTTTTCTATAGAT
*
76842222 CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGTTGAGTAGTTATCT
456 CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
76842287 TTTTTAATAATTATATCTTTGACTTGCGTATGTGTTTTATTATGTTGAAAGGTAAACTCGTATAC
521 TTTTTAATAATTATATCTTTGACTTGCGTATGTGTTTTATTATGTTGAAAGGTAAACTCGTATAC
76842352 TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTG
586 TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTG
76842402 GTGTTAAACG
Statistics
Matches: 621, Mismatches: 14, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
643 621 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.35
Consensus pattern (643 bp):
GAAGCTATCATTTCCCTTGTGCAAAAGAGATTCCAAAATGTCGATGGGACTATGTAATTCTTCAG
TCAAGTTTCCAAACGAGAAGTCTAGAAAGGCCCATTCTACAGCCAAGTTCCCAAATAAGAAGCCT
GGAAACTGTCTATCTACTGATGATAAAGTGCCAACTGAAAGGTAATTAATCAATTAAGATATCTT
AGACGTCTTACGCAGGTGTATAACTCCATTGCATGCTTTTTGAGGGACTTAACTACTTTATTTTT
CATTTACTTTCTCTTAAGAAGAAAGAAATGGCAAAAAAAGCCAAATTATTTGAAGTTTTCAGTTA
TGGAATCTTAAACTGGTTATTGAATTGTCTGGAGAGTAAACTGATTGTGGTTCTGCATGCAGTGG
CCAGCTGAAATCCAACACTTTTTGAGGCCAGCCAGAGAATAAAAAAGATTGGGTTTTCTATAGAT
CTGCTTTGTCTCCTGAGGAAAAGGTTAGATTAGATGAAACCCATTTTTCTGGTGAGTAGTTATCT
TTTTTAATAATTATATCTTTGACTTGCGTATGTGTTTTATTATGTTGAAAGGTAAACTCGTATAC
TGATGATATTTTTGCAAGTACTGAAATTTCTCGTTAATTGATTCTTTTTGCAAGTACT
Found at i:76843598 original size:5 final size:5
Alignment explanation
Indices: 76843588--76843658 Score: 62
Period size: 5 Copynumber: 14.6 Consensus size: 5
76843578 TAAAAAATAT
* *
76843588 TATTA TATTA TAGTAA TGATTA TGTT- T-TTA TATTA TATTA TCATTA
1 TATTA TATTA TA-TTA T-ATTA TATTA TATTA TATTA TATTA T-ATTA
76843634 -A-TA TATTA TATTA TATTA TA-TA TAT
1 TATTA TATTA TATTA TATTA TATTA TAT
76843659 ACATAAAACA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
3 4 0.07
4 8 0.15
5 32 0.58
6 10 0.18
7 1 0.02
ACGTcount: A:0.38, C:0.01, G:0.04, T:0.56
Consensus pattern (5 bp):
TATTA
Found at i:76843640 original size:19 final size:19
Alignment explanation
Indices: 76843616--76843658 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
76843606 ATTATGTTTT
76843616 TATATTATATTATCATTA-A
1 TATATTATATTAT-ATTATA
76843635 TATATTATATTATATTATA
1 TATATTATATTATATTATA
76843654 TATAT
1 TATAT
76843659 ACATAAAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TATATTATATTATATTATA
Found at i:76843690 original size:17 final size:17
Alignment explanation
Indices: 76843668--76843701 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
76843658 TACATAAAAC
*
76843668 AAAAGAAAGAATAGAAA
1 AAAAGAAAGAAAAGAAA
76843685 AAAAGAAAGAAAAGAAA
1 AAAAGAAAGAAAAGAAA
76843702 CAGAATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (17 bp):
AAAAGAAAGAAAAGAAA
Found at i:76843697 original size:9 final size:9
Alignment explanation
Indices: 76843668--76843701 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
76843658 TACATAAAAC
76843668 AAAAGAAAG
1 AAAAGAAAG
*
76843677 AATAGAAA-
1 AAAAGAAAG
76843685 AAAAGAAAG
1 AAAAGAAAG
76843694 AAAAGAAA
1 AAAAGAAA
76843702 CAGAATAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
8 7 0.32
9 15 0.68
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (9 bp):
AAAAGAAAG
Found at i:76844684 original size:46 final size:44
Alignment explanation
Indices: 76844632--76844717 Score: 136
Period size: 46 Copynumber: 1.9 Consensus size: 44
76844622 AGAACAGAAA
*
76844632 TGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACATGAT
1 TGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAGACATGAT
*
76844678 TGAGCCATGTAAGTCCATATTATATATGGCATTGGAGACA
1 TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACA
76844718 GGAATAATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 17 0.45
46 21 0.55
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.30
Consensus pattern (44 bp):
TGAGCCATGTAAGTCCATATTAAATATGGCATTGGAGACATGAT
Found at i:76844731 original size:44 final size:45
Alignment explanation
Indices: 76844625--76844758 Score: 126
Period size: 46 Copynumber: 3.0 Consensus size: 45
76844615 ACAGGACAGA
* * *
76844625 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* * * *
76844671 ACATGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
** * * * *
76844715 ACAGGAATAATTCATGTAAGTTCATGTCAAAGACATGGCATTGG
1 ACAGGAATAAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
76844759 CAGGGTATTG
Statistics
Matches: 71, Mismatches: 15, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
44 34 0.48
45 1 0.01
46 36 0.51
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (45 bp):
ACAGGAATAAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:76847198 original size:31 final size:30
Alignment explanation
Indices: 76847160--76847217 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
76847150 AAACTATAAC
76847160 AGAGGAAGATAAAAAAGATTACCAAAAGATT
1 AGAGGAAGAT-AAAAAGATTACCAAAAGATT
* *
76847191 AGAGGAAGATAAGAATATTACCAAAAG
1 AGAGGAAGATAAAAAGATTACCAAAAG
76847218 CAAATGTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.16
Consensus pattern (30 bp):
AGAGGAAGATAAAAAGATTACCAAAAGATT
Found at i:76851185 original size:31 final size:30
Alignment explanation
Indices: 76851149--76851206 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
76851139 AAACTATAAC
76851149 AGAGGAAGATAAAAAAGATTACCAAAAGATT
1 AGAGGAAGAT-AAAAAGATTACCAAAAGATT
* *
76851180 AGAGGAAGATAAGAATATTACCAAAAG
1 AGAGGAAGATAAAAAGATTACCAAAAG
76851207 CAAATGTTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.16
Consensus pattern (30 bp):
AGAGGAAGATAAAAAGATTACCAAAAGATT
Found at i:76856307 original size:50 final size:50
Alignment explanation
Indices: 76856232--76856339 Score: 207
Period size: 50 Copynumber: 2.2 Consensus size: 50
76856222 CCATGGCAAC
*
76856232 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
76856282 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
76856332 AAGTGATA
1 AAGTGATA
76856340 GTGATAAGTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.26
Consensus pattern (50 bp):
AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:76856402 original size:31 final size:31
Alignment explanation
Indices: 76856367--76856462 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
76856357 TAGCTTTTGT
76856367 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
* *
76856398 TACCTGATCAGTGAAAAATGGTAGCTCTGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
* *
76856429 TACCTGATCAGTGAATAGTGGTAGCTTCGGC
1 TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
76856460 TAC
1 TAC
76856463 AAGTGACAAG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (31 bp):
TACCTGATCAGTGAAAAGTGGTAGCTCCGGC
Found at i:76856555 original size:47 final size:47
Alignment explanation
Indices: 76856486--76856650 Score: 173
Period size: 47 Copynumber: 3.6 Consensus size: 47
76856476 CAAGTAATTT
* *
76856486 CTGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
76856533 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
76856580 C-GTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * *
76856622 -TGTGTAAGACCATAGCTGGGCTATGGCAT
1 CTGTATAAGACCATATCTGGGATATGGCAT
76856651 TATTATGTGA
Statistics
Matches: 106, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
41 7 0.07
42 30 0.28
46 26 0.25
47 43 0.41
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (47 bp):
CTGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:76856639 original size:42 final size:43
Alignment explanation
Indices: 76856538--76856737 Score: 230
Period size: 42 Copynumber: 4.7 Consensus size: 43
76856528 TGCTACTGTA
* * *
76856538 TAAGACCATATCTGGGATATGGCATCAGTGAGATATGTG-AT-TCGTG
1 TAAGACCATAGCTGGGCTATGGCATC---GA-TTATGTGAATAT-GTG
*
76856584 TAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATATGTG
*
76856626 TAAGACCATAGCTGGGCTATGGCAT-TATTATGTGAATATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATATGTG
* *
76856668 TAAGACCATAGCTAGGCTATGGCATC-ATTATGTGAAGATGTG
1 TAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATATGTG
* **
76856710 TAAGACCATAGTTGAACTATGGCATCGA
1 TAAGACCATAGCTGGGCTATGGCATCGA
76856738 GAAAACGAAG
Statistics
Matches: 138, Mismatches: 11, Indels: 13
0.85 0.07 0.08
Matches are distributed among these distances:
41 6 0.04
42 104 0.75
43 4 0.03
46 24 0.17
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.29
Consensus pattern (43 bp):
TAAGACCATAGCTGGGCTATGGCATCGATTATGTGAATATGTG
Found at i:76868690 original size:23 final size:22
Alignment explanation
Indices: 76868652--76868712 Score: 90
Period size: 21 Copynumber: 2.8 Consensus size: 22
76868642 GACACATAAA
*
76868652 GTGCCT-AAAACGACACACGAG
1 GTGCCTGAATACGACACACGAG
76868673 GTGCCTG-ATACGACACACGAG
1 GTGCCTGAATACGACACACGAG
76868694 GTGCCTGAAATACGACACA
1 GTGCCTG-AATACGACACA
76868713 TAAAGTGCCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
21 26 0.72
23 10 0.28
ACGTcount: A:0.34, C:0.28, G:0.25, T:0.13
Consensus pattern (22 bp):
GTGCCTGAATACGACACACGAG
Found at i:76868720 original size:23 final size:23
Alignment explanation
Indices: 76868642--76868724 Score: 84
Period size: 21 Copynumber: 3.8 Consensus size: 23
76868632 ATCAGTATAT
*
76868642 GACACATAAAGTGCCT-AAA-AC
1 GACACACAAAGTGCCTGAAATAC
* *
76868663 GACACACGAGGTGCCTG--ATAC
1 GACACACAAAGTGCCTGAAATAC
* *
76868684 GACACACGAGGTGCCTGAAATAC
1 GACACACAAAGTGCCTGAAATAC
*
76868707 GACACATAAAGTGCCTGA
1 GACACACAAAGTGCCTGA
76868725 TCGATAAAGC
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
23 19 0.37
ACGTcount: A:0.37, C:0.25, G:0.23, T:0.14
Consensus pattern (23 bp):
GACACACAAAGTGCCTGAAATAC
Done.