Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 247 of 259
Found at i:77482825 original size:47 final size:47
Alignment explanation
Indices: 77482693--77482831 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
77482683 TTATTATTAC
* *
77482693 ATATAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
77482740 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
77482784 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
77482831 A
1 A
77482832 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:77487468 original size:35 final size:35
Alignment explanation
Indices: 77487422--77487489 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
77487412 CTATTGCTTG
*
77487422 TTATGTGAATTCTGTGCATCTTGTACGTGACTCTA
1 TTATGTGAATTCTGTGCATCATGTACGTGACTCTA
77487457 TTATGTGAATTCTGTGCATCATGTACGTGACTC
1 TTATGTGAATTCTGTGCATCATGTACGTGACTC
77487490 AATCAATCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.21, C:0.18, G:0.21, T:0.41
Consensus pattern (35 bp):
TTATGTGAATTCTGTGCATCATGTACGTGACTCTA
Found at i:77489547 original size:13 final size:12
Alignment explanation
Indices: 77489515--77489551 Score: 58
Period size: 11 Copynumber: 3.1 Consensus size: 12
77489505 CGGATTCCCC
77489515 TCCCTTCTCTC-
1 TCCCTTCTCTCT
77489526 TCCCTTCTCTCT
1 TCCCTTCTCTCT
77489538 TCCCTCTCTCTCT
1 TCCCT-TCTCTCT
77489551 T
1 T
77489552 TTTTTTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.46
12 5 0.21
13 8 0.33
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (12 bp):
TCCCTTCTCTCT
Found at i:77490076 original size:23 final size:23
Alignment explanation
Indices: 77490032--77490077 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
77490022 TTACCATTAT
**
77490032 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
77490055 TATTTTTATTATGTACGGGTATA
1 TATTATTATTATGTACGAGTATA
77490078 CCTATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.02, G:0.13, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:77490344 original size:19 final size:19
Alignment explanation
Indices: 77490309--77490345 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
77490299 ATATATTACC
**
77490309 TAAATATTTTAGTATTATG
1 TAAATATTTTAACATTATG
77490328 TAAATATTTTAACATTAT
1 TAAATATTTTAACATTAT
77490346 ATTATATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (19 bp):
TAAATATTTTAACATTATG
Found at i:77492550 original size:19 final size:20
Alignment explanation
Indices: 77492510--77492553 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
77492500 GTTTCTTTTG
* *
77492510 GCATT-CATTTCATGCATTT
1 GCATTACATTGCATGCATAT
77492529 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
77492548 GCATTA
1 GCATTA
77492554 GACTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:77496728 original size:86 final size:86
Alignment explanation
Indices: 77496583--77496846 Score: 420
Period size: 86 Copynumber: 3.1 Consensus size: 86
77496573 AGTAAAAATT
* * * * *
77496583 GAAGATAAACCTTGCCTCTCTCGGTCGTAGCAGAGCTGGTTGAAGTTATCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
77496648 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
77496669 GAAGACAAACCTTGCCACTCTCGTTTGTAGTAGAGCTGGTTGAAGATAGCAGATCTTGCCTTCCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
77496734 GCATTGACAGCGAAGCAGATC
66 GCATTGACAGCGAAGCAGATC
* *
77496755 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCTTTTCT
1 GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
* *
77496820 GTATTTGGCAGCGAAGCAGATC
66 GCA-TTGACAGCGAAGCAGATC
77496842 GAAGA
1 GAAGA
77496847 TGGCAGATTT
Statistics
Matches: 164, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
86 142 0.87
87 22 0.13
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (86 bp):
GAAGACAAACCTTGCCACTCTCGTTTGTAGCAGAGCTGGTTGAAGATATCAGATCTTGCCTTCCT
GCATTGACAGCGAAGCAGATC
Found at i:77496770 original size:42 final size:42
Alignment explanation
Indices: 77496637--77496770 Score: 105
Period size: 42 Copynumber: 3.1 Consensus size: 42
77496627 GTTATCAGAT
77496637 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
* * * * * * * * *
77496679 CTTGCC-ACTCT-CGTTTG-TAG-TAGAGCTGGTTGAAGATAGCAGAT
1 CTTGCCTTC-CTGC-ATTGACAGCGA-AGCAGATCGAAG--A-CAAAC
77496723 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
1 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
77496765 CTTGCC
1 CTTGCC
77496771 ACTCTCGTTT
Statistics
Matches: 64, Mismatches: 18, Indels: 20
0.63 0.18 0.20
Matches are distributed among these distances:
40 1 0.02
41 13 0.20
42 20 0.31
43 2 0.03
44 14 0.22
45 13 0.20
46 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (42 bp):
CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACAAAC
Found at i:77496964 original size:46 final size:46
Alignment explanation
Indices: 77496902--77497134 Score: 142
Period size: 46 Copynumber: 5.2 Consensus size: 46
77496892 ATAATTCTAT
77496902 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
77496948 CTTCCTGTATTTGGCAG-CGAAGCAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
*** * * ** *
77496994 CTCCCTG-A--CCACAGTGGAGTACATTGAAG-CCG-ATAATTCTAT--
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCA-GA-TCT-TGC
77497036 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
1 CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
* * * ** * * *
77497082 CTTCCTGTATTCGGCAG-CGAAGTAGATCAAAGATGGCAGATTTTAC
1 CTCCCTGTATTTGGCAGTGGAA-TAGATTGAAGATTGCAGATCTTGC
77497128 CTCCCTG
1 CTCCCTG
77497135 ACTACAGTGG
Statistics
Matches: 135, Mismatches: 39, Indels: 26
0.68 0.19 0.13
Matches are distributed among these distances:
41 1 0.01
42 9 0.07
43 12 0.09
44 4 0.03
45 26 0.19
46 82 0.61
47 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (46 bp):
CTCCCTGTATTTGGCAGTGGAATAGATTGAAGATTGCAGATCTTGC
Found at i:77497034 original size:134 final size:134
Alignment explanation
Indices: 77496794--77497203 Score: 696
Period size: 134 Copynumber: 3.1 Consensus size: 134
77496784 GCAGAGCTGG
* * *
77496794 TTGAAGATAT-CAGATCTTGCTTTTCTGTATTTGGCAGCGAAGCAGATCGAAGATGGCAGATTTT
1 TTGAAGAT-TGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTT
77496858 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
65 ACCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGA
77496923 ATAGA
130 ATAGA
77496928 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
*
77496993 CCTCCCTGACCACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
77497058 TAGA
131 TAGA
* *
77497062 TTGAAGATTGCAGATCTTGCCTTCCTGTATTCGGCAGCGAAGTAGATCAAAGATGGCAGATTTTA
1 TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
* * * * *
77497127 CCTCCCTGACTACAGTGGAGTACATTAAAGCCGATAACTCTATCTCTCTGCATTTGGCAGTGGAA
66 CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
77497192 TAGA
131 TAGA
*
77497196 TTAAAGAT
1 TTGAAGAT
77497204 CAAAGATGGC
Statistics
Matches: 263, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
133 1 0.00
134 262 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30
Consensus pattern (134 bp):
TTGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGCAGATTTTA
CCTCCCTGACAACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGTATTTGGCAGTGGAA
TAGA
Found at i:77497215 original size:95 final size:95
Alignment explanation
Indices: 77497105--77497298 Score: 336
Period size: 95 Copynumber: 2.0 Consensus size: 95
77497095 GCAGCGAAGT
77497105 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACA-GTGGAGTACATTAAAGCCGATAACTCTA
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATG-GGAGTACATTAAAGCCGATAACTCTA
*
77497169 TCTCTCTGCATTTGGCAGTGGAATAGATTAA
65 TCTCCCTGCATTTGGCAGTGGAATAGATTAA
* *
77497200 AGATCAAAGATGGCAGATTTTACTTCCCTGACTACATGGGAGTACATTGAAGCCGATAACTCTAT
1 AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTAAAGCCGATAACTCTAT
*
77497265 CTCCCTGTATTTGGCAGTGGAATAGATTAA
66 CTCCCTGCATTTGGCAGTGGAATAGATTAA
77497295 AGAT
1 AGAT
77497299 TGTAGATCTT
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
95 93 0.99
96 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (95 bp):
AGATCAAAGATGGCAGATTTTACCTCCCTGACTACATGGGAGTACATTAAAGCCGATAACTCTAT
CTCCCTGCATTTGGCAGTGGAATAGATTAA
Found at i:77497526 original size:132 final size:132
Alignment explanation
Indices: 77497370--77498231 Score: 1499
Period size: 132 Copynumber: 6.5 Consensus size: 132
77497360 CCTGATTACA
* * *
77497370 GAAGTGGATCGACGACGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
*
77497435 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATTTTCCTATATTGAT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGAT
77497500 AG
131 AG
77497502 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
*
77497567 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATTTTCCTATATTGAT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGAT
77497632 AG
131 AG
77497634 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
*
77497699 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGTAGGTCCTATTTTCCTATATTGAT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGAT
77497764 AG
131 AG
77497766 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
* * *
77497831 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTATTTTCCTATATTGGT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGAT
77497896 AG
131 AG
* *
77497898 GAAGTGGATCGAAGATGCAGATCTTGTCTTCCTATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
* * * * *
77497963 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCCTGTCTTCCTATATTGGT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGAT
77498028 AG
131 AG
* * *
77498030 GAAGTGGATCGAAAATACAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
*
77498095 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGAT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGAT
77498160 AG
131 AG
* * * * *
77498162 GAAGTGGATCCAAGATACAAATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCGAAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
77498227 ATCTT
66 ATCTT
77498232 ATCCCTGTAT
Statistics
Matches: 706, Mismatches: 24, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
132 706 1.00
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (132 bp):
GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATTTTCCTATATTGAT
AG
Found at i:77498460 original size:40 final size:40
Alignment explanation
Indices: 77498407--77498558 Score: 191
Period size: 40 Copynumber: 3.8 Consensus size: 40
77498397 AAGATTACAA
* * *
77498407 TCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATTAAG
* *
77498447 TCTTATCTCCCTAAGCAGTAGCGGAGCAGA-CGAAACTACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG-AATTA-AG
* *
77498488 ATCTTATCTCCCTAAGCAATAGTGGAGCAGATC-ATATTCAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA-ATTAAG
77498529 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
77498559 CTAAAAACAC
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
39 2 0.02
40 59 0.61
41 5 0.05
42 30 0.31
43 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAATTAAG
Found at i:77498499 original size:82 final size:81
Alignment explanation
Indices: 77498402--77498559 Score: 244
Period size: 82 Copynumber: 1.9 Consensus size: 81
77498392 GATCGAAGAT
* * * *
77498402 TACAATCTTATCTCCCTAAGTAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTA
1 TACAATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATTAAGTCTTATCTCCCTAAGCAGTA
77498467 GCGGAGCAGACGAAAC
66 GCGGAGCAGACGAAAC
* *
77498483 TACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCATATTCAGTCTTATCTCCCTAAGCAGT
1 TACA-ATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATTAAGTCTTATCTCCCTAAGCAGT
*
77498548 AGTGGAGCAGAC
65 AGCGGAGCAGAC
77498560 TAAAAACACC
Statistics
Matches: 69, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
81 4 0.06
82 65 0.94
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (81 bp):
TACAATCTTATCTCCCTAAGCAATAGTGGAGCAGATCACATTAAGTCTTATCTCCCTAAGCAGTA
GCGGAGCAGACGAAAC
Found at i:77501085 original size:15 final size:15
Alignment explanation
Indices: 77501065--77501093 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77501055 GGAGTAGACC
77501065 AGGTACGTTTTATTA
1 AGGTACGTTTTATTA
77501080 AGGTACGTTTTATT
1 AGGTACGTTTTATT
77501094 TCAAAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.07, G:0.21, T:0.48
Consensus pattern (15 bp):
AGGTACGTTTTATTA
Found at i:77501847 original size:53 final size:49
Alignment explanation
Indices: 77501758--77501862 Score: 129
Period size: 53 Copynumber: 2.1 Consensus size: 49
77501748 GAAGGGCCAC
** *
77501758 TTATAAATAATTTTATCAATATAATAATATTGATCATTGTTTAAATATA
1 TTATAAATAATTTTATCAATATAATAATATTGATCATTACTTAAATAAA
* *
77501807 TTATAACTAATTTTTATCAAAATAGTATTAATATTGATCATTACTTAAATAAA
1 TTATAAATAA-TTTTATC--AATA-TAATAATATTGATCATTACTTAAATAAA
77501860 TTA
1 TTA
77501863 CATAACTCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
49 9 0.19
50 7 0.15
52 4 0.09
53 27 0.57
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.46
Consensus pattern (49 bp):
TTATAAATAATTTTATCAATATAATAATATTGATCATTACTTAAATAAA
Found at i:77506349 original size:44 final size:44
Alignment explanation
Indices: 77506184--77506433 Score: 257
Period size: 42 Copynumber: 5.7 Consensus size: 44
77506174 ACTGGGCAAA
* * * *
77506184 TTAGCGGTGTTTTTATAAAACAAGCGCCACTAAAGGTCCTGTTCT
1 TTAGCGGCGTTTTTCTAAAA-AAGCGCCGCTAAAAGTCCTGTTCT
* * *
77506229 TTAACGGTGTTTTTCT--AAAAGCGCCGCTAAAAGTTCTGTTCT
1 TTAGCGGCGTTTTTCTAAAAAAGCGCCGCTAAAAGTCCTGTTCT
*
77506271 TTAGCGGCGTTTTTCT--AAAAGCGCCGTTAAAAGTCCTCG-TCT
1 TTAGCGGCGTTTTTCTAAAAAAGCGCCGCTAAAAGTCCT-GTTCT
*
77506313 TTAGCGGCGTTTTT-TAAAGAAAGCGCCGCTAAAAGTCCTGATCT
1 TTAGCGGCGTTTTTCTAAA-AAAGCGCCGCTAAAAGTCCTGTTCT
* * *
77506357 TTAGCGACGTTTGTT-TAAAAAAACGCCGCTAAAAGTCCTGGTCT
1 TTAGCGGCGTTT-TTCTAAAAAAGCGCCGCTAAAAGTCCTGTTCT
*
77506401 TCAGCGGCGCTTTTT-TCAAACAAA-CGCCGCTAA
1 TTAGCGGCG-TTTTTCT-AAA-AAAGCGCCGCTAA
77506434 TTTTACCGGT
Statistics
Matches: 181, Mismatches: 15, Indels: 18
0.85 0.07 0.08
Matches are distributed among these distances:
41 1 0.01
42 71 0.39
43 5 0.03
44 66 0.36
45 35 0.19
46 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (44 bp):
TTAGCGGCGTTTTTCTAAAAAAGCGCCGCTAAAAGTCCTGTTCT
Found at i:77506360 original size:86 final size:89
Alignment explanation
Indices: 77506246--77506433 Score: 251
Period size: 86 Copynumber: 2.1 Consensus size: 89
77506236 TGTTTTTCTA
* * * * *
77506246 AAAGCGCCGCTAAAAGTTCTGTTCTTTAGCGGCGTTT-TTCT-AAAAGCGCCGTTAAAAGTCCTC
1 AAAGCGCCGCTAAAAGTCCTGATCTTTAGCGACGTTTGTT-TAAAAAACGCCGCTAAAAGTCCTC
* *
77506309 GTCTTTAGCGGCG-TTTTTT-AAAG
65 GTCTTCAGCGGCGCTTTTTTCAAAC
*
77506332 AAAGCGCCGCTAAAAGTCCTGATCTTTAGCGACGTTTGTTTAAAAAAACGCCGCTAAAAGTCCTG
1 AAAGCGCCGCTAAAAGTCCTGATCTTTAGCGACGTTTGTTT-AAAAAACGCCGCTAAAAGTCCTC
77506397 GTCTTCAGCGGCGCTTTTTTCAAAC
65 GTCTTCAGCGGCGCTTTTTTCAAAC
77506422 AAA-CGCCGCTAA
1 AAAGCGCCGCTAA
77506434 TTTTACCGGT
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
86 35 0.39
87 2 0.02
88 31 0.35
89 15 0.17
90 6 0.07
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (89 bp):
AAAGCGCCGCTAAAAGTCCTGATCTTTAGCGACGTTTGTTTAAAAAACGCCGCTAAAAGTCCTCG
TCTTCAGCGGCGCTTTTTTCAAAC
Found at i:77514976 original size:21 final size:21
Alignment explanation
Indices: 77514950--77514993 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
77514940 AATTAAGCAT
*
77514950 TTGGTCTAAGTAAACTTTGAA
1 TTGGTCTAAGTAAACTTCGAA
*
77514971 TTGGTCTAAGTCAACTTCGAA
1 TTGGTCTAAGTAAACTTCGAA
77514992 TT
1 TT
77514994 TAACCAGAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.39
Consensus pattern (21 bp):
TTGGTCTAAGTAAACTTCGAA
Found at i:77516803 original size:23 final size:22
Alignment explanation
Indices: 77516756--77516806 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
77516746 CATGGTTAAA
*
77516756 TTTTTTTTATTAGTCTTTGTAT
1 TTTTTTTTATTAATCTTTGTAT
77516778 TTTTATTTTATTAAT-TTTAGT-T
1 TTTT-TTTTATTAATCTTT-GTAT
77516800 TTTTTTT
1 TTTTTTT
77516807 ATTTTTTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
21 3 0.12
22 12 0.46
23 11 0.42
ACGTcount: A:0.16, C:0.02, G:0.06, T:0.76
Consensus pattern (22 bp):
TTTTTTTTATTAATCTTTGTAT
Found at i:77517020 original size:21 final size:19
Alignment explanation
Indices: 77516995--77517035 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
77516985 TTTAGAATTT
77516995 TAAAAATAAAAAATAATTAAA
1 TAAAAAT-AAAAA-AATTAAA
*
77517016 TAAAAGTAAAAAAATTAAA
1 TAAAAATAAAAAAATTAAA
77517035 T
1 T
77517036 TCATAACTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 5 0.26
21 6 0.32
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (19 bp):
TAAAAATAAAAAAATTAAA
Found at i:77518201 original size:9 final size:9
Alignment explanation
Indices: 77518171--77518206 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
77518161 CACCTATTTG
77518171 TTATTTGAA
1 TTATTTGAA
*
77518180 TTATTAGAA
1 TTATTTGAA
*
77518189 TTATTTGAG
1 TTATTTGAA
77518198 TTATTTGAA
1 TTATTTGAA
77518207 AATTTAACTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (9 bp):
TTATTTGAA
Found at i:77535477 original size:129 final size:130
Alignment explanation
Indices: 77535294--77535579 Score: 323
Period size: 129 Copynumber: 2.2 Consensus size: 130
77535284 CAACCTGCTT
* * * *
77535294 TACTGCAACTTCAGAGAGATAAGAT-CTATGGTTTTAACCCGCTCCTCTGCAACTTCAGGGAGAT
1 TACTGTAACTTCAGGGAGATAAGATCCTATGATTTTAACCCGCTCCACTGCAACTTCAGGGAGAT
* * *
77535358 AGGATTGATTTCTTTC-GTCTACTCCACTGCAA-CTTCAGGGAGATAAGA-CTGG-ATGCGATCT
66 AGGATAG-TGTC-TTCAATCTACTCCACTGCAATC-TCAGGGAGATAAGATCTGGCAT-CGATCT
77535419 ACTC
127 ACTC
* * *
77535423 TACTGTAACTTCAGGGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTCAGGGAGAT
1 TACTGTAACTTCAGGGAGATAAGATCCTATGATTTTAACCCGCTCCACTGCAACTTCAGGGAGAT
* * * * *
77535487 AGGATAGTGTCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCCTCGATCTGC
66 AGGATAGTGTCTTCAATCTACTCCACTGCAATCTCAGGGAGATAAGA--TCTGGCATCGATCTAC
77535552 TC
129 TC
* *
77535554 CACTGTAACCTCAGGGAGATAAGATC
1 TACTGTAACTTCAGGGAGATAAGATC
77535580 TGAAATTTTT
Statistics
Matches: 133, Mismatches: 17, Indels: 12
0.82 0.10 0.07
Matches are distributed among these distances:
127 3 0.02
128 29 0.22
129 61 0.46
130 2 0.02
131 37 0.28
132 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (130 bp):
TACTGTAACTTCAGGGAGATAAGATCCTATGATTTTAACCCGCTCCACTGCAACTTCAGGGAGAT
AGGATAGTGTCTTCAATCTACTCCACTGCAATCTCAGGGAGATAAGATCTGGCATCGATCTACTC
Found at i:77535485 original size:44 final size:42
Alignment explanation
Indices: 77535379--77535748 Score: 220
Period size: 44 Copynumber: 8.7 Consensus size: 42
77535369 CTTTCGTCTA
* * * * *
77535379 CTCCACTGCAACTTCAGGGAGATAAGA--CTGGATGCGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCCT-TATTCAATCTG
* * *
77535420 CTCTACTGTAACTTCAGGGAGATAAGATCCTTTATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCC-TTA-TTCAATCTG
* ** *
77535464 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCAATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCT-TATTCAATCTG
* * *** *
77535507 CTCCGCTGTAA-TCTCAGGGAGATAAGATTTCTGGCCTCGATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-TCCT-TATTCAATCTG
* * * *
77535551 CTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTTTTAGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCT----TATTCAATCTG
* * ** * *
77535596 TTCCACTGTAA-TCTCAGGGAAATAAGA-CCTGGTGCGATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCCTTATTCAATCTG
* * * *
77535637 CTCTACCGTAACTTCAGAGAGATAAGATCC-T-TT-AATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCCTTATTCAATCTG
* *
77535676 CTCCACTGTAACTTCAGGGAGATAGGATTACTATATTCAATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGA-TCCT-TATTCAATCTG
*
77535720 CTCCGCTGTAA-TCTCAGGGAGATAAGATC
1 CTCCACTGTAACT-TCAGGGAGATAAGATC
77535749 TGCAATTCTT
Statistics
Matches: 250, Mismatches: 58, Indels: 40
0.72 0.17 0.11
Matches are distributed among these distances:
39 27 0.11
40 3 0.01
41 50 0.20
42 7 0.03
43 38 0.15
44 95 0.38
45 30 0.12
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (42 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCCTTATTCAATCTG
Found at i:77535660 original size:86 final size:87
Alignment explanation
Indices: 77535503--77535665 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 87
77535493 GTGTCTTCAA
* * * *
77535503 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCCTCGATCTGCTCCACTGTAACCTCAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGA-TCCTGG-CTCGATCTGCTCCACCGTAACCTCAG
*
77535568 GGAGATAAGATCTGAAATTTTTAG
64 AGAGATAAGATCTGAAATTTTTAG
* * *
77535592 TCTGTTCCACTGTAATCTCAGGGAAATAAGA-CCTGG-TGCGATCTGCTCTACCGTAACTTCAGA
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGATCCTGGCT-CGATCTGCTCCACCGTAACCTCAGA
77535655 GAGATAAGATC
65 GAGATAAGATC
77535666 CTTTAATCCG
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 1 0.02
86 32 0.49
87 4 0.06
89 28 0.43
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (87 bp):
TCTGCTCCACTGTAATCTCAGGGAAATAAGATCCTGGCTCGATCTGCTCCACCGTAACCTCAGAG
AGATAAGATCTGAAATTTTTAG
Found at i:77549341 original size:13 final size:14
Alignment explanation
Indices: 77549323--77549362 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
77549313 AGAGAGCCCT
*
77549323 ACAAAAAACAC-AC
1 ACAAAAAACACAAA
77549336 ACAAAAAA-ACAAA
1 ACAAAAAACACAAA
77549349 ACAAAAAACA-AAA
1 ACAAAAAACACAAA
77549362 A
1 A
77549363 ATTCTAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 2 0.08
13 21 0.88
14 1 0.04
ACGTcount: A:0.80, C:0.20, G:0.00, T:0.00
Consensus pattern (14 bp):
ACAAAAAACACAAA
Found at i:77549354 original size:12 final size:12
Alignment explanation
Indices: 77549323--77549361 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
77549313 AGAGAGCCCT
*
77549323 ACAAAAAACACAC
1 ACAAAAAACA-AA
77549336 ACAAAAAAACAAA
1 AC-AAAAAACAAA
77549349 ACAAAAAACAAA
1 ACAAAAAACAAA
77549361 A
1 A
77549362 AATTCTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 11 0.46
13 5 0.21
14 8 0.33
ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00
Consensus pattern (12 bp):
ACAAAAAACAAA
Found at i:77549795 original size:53 final size:52
Alignment explanation
Indices: 77549696--77549799 Score: 136
Period size: 53 Copynumber: 2.0 Consensus size: 52
77549686 GTCCAAATAA
* * * *
77549696 ATTTTCTTCTTATTACATTGCTATCTTTGATTAAATCATTCGTTTTGAGTTG
1 ATTTCCTTCTTATTACATTGCAATCTTTGATTAAATCATCCATTTTGAGTTG
* * *
77549748 ATTTCCTTCTTATTGCATTTGCAATCTTTGATTAATTTATCCATTTTGAGTT
1 ATTTCCTTCTTATTACA-TTGCAATCTTTGATTAAATCATCCATTTTGAGTT
77549800 ATGCTCCTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 15 0.34
53 29 0.66
ACGTcount: A:0.21, C:0.14, G:0.11, T:0.54
Consensus pattern (52 bp):
ATTTCCTTCTTATTACATTGCAATCTTTGATTAAATCATCCATTTTGAGTTG
Found at i:77551061 original size:205 final size:205
Alignment explanation
Indices: 77550697--77551182 Score: 747
Period size: 205 Copynumber: 2.4 Consensus size: 205
77550687 ATCAGGCGGA
* *
77550697 GAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
* *
77550762 TTGGCATTTCTGTATTGTCAGAGAACAAATCGAAGTCTAGTATCTCCACTTCAATGGAAGGCAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAAGGCAGA
* * *
77550827 CACATAGCAGATCCAACCTTCAGATGTTTATACTGAAGTAGATCCAAGATGGCTTGGCATCCTTG
131 CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGCTTGCCATCCTTG
77550892 TGCTTACAAT
196 TGCTTACAAT
* * * *
77550902 GAGCAAATCGAAGACATAGCTAATTTGGCTTTCACGTGCTTACGTTAAAGCAAATCTAATATGAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
* * * * * *
77550967 TTGGCATCTCTGTATTGTTAGAGAACAAATTGAAGTCTGGCATCTCCACTTCGATGGAGGGTAGA
66 TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAAGGCAGA
* *
77551032 CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAATATGGTTTGCCATCCTTG
131 CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGCTTGCCATCCTTG
77551097 TGCTTACAAT
196 TGCTTACAAT
* * * * *
77551107 GAGCAAATCGAAGACATAGTTGATTTCGCTTTCACGTGTTTATGTTGAAGCAAATCCAAGATAAT
1 GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
*
77551172 TTGGCGTCTCT
66 TTGGCATCTCT
77551183 ATGCGGCGGA
Statistics
Matches: 252, Mismatches: 29, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
205 252 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30
Consensus pattern (205 bp):
GAGCAAATCGAAGACATAGCTGATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGAT
TTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTCTAGCATCTCCACTTCAATGGAAGGCAGA
CACATAGCAGATCCAACCTTCAAATGTTTATACTGAAGCAGATCCAAGATGGCTTGCCATCCTTG
TGCTTACAAT
Found at i:77551349 original size:132 final size:132
Alignment explanation
Indices: 77551193--77552174 Score: 1662
Period size: 132 Copynumber: 7.4 Consensus size: 132
77551183 ATGCGGCGGA
*
77551193 GAACAAATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* *
77551258 TATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
77551323 GG
131 GG
* *
77551325 GAACAGATCGAAGATAGCAGATCTGACATTCTTGTGCTTACGGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* **
77551390 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGCACTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
77551455 GG
131 GG
*
77551457 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAACAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
77551522 CATGGCATCCCTGTGCTTATAGGGAACAAGTTAAAAATAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
77551587 GG
131 GG
* *
77551589 GAACAGATCAAAGATAGCAGATCTGACATTCTTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
77551654 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
77551719 GG
131 GG
**
77551721 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTATTGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
77551786 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
77551851 GG
131 GG
*
77551853 GAACAGATCGAAGATAGCAGATCTGACATTTCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
*
77551918 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAACAGCAGATTTGGCATCCCTGTGCTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
77551983 GG
131 GG
*
77551985 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACGGTGAAGCAGATCGAAGATTTCAG
1 GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
* * *
77552050 CATGGAATCCCTGTGCTTATAGGGAACAAGTTGAAGATAGCAGATTTGGCATCCCTGTGTTTATA
66 CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
77552115 GG
131 GG
* * * * * * ** *
77552117 GAACA-AGTTGAAGACAGCAGATTTGGCATCCCTGTGTTTATGGGGAA-CAGATCGAAGA
1 GAACAGA-TCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGA
77552175 AGCAGATCAA
Statistics
Matches: 806, Mismatches: 43, Indels: 3
0.95 0.05 0.00
Matches are distributed among these distances:
131 12 0.01
132 794 0.99
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (132 bp):
GAACAGATCGAAGATAGCAGATCTGACATTCCTGTGCTTACAGTGAAGCAGATCGAAGATTTCAG
CATGGCATCCCTGTGCTTATAGGGAACAAGTTGAAAATAGCAGATTTGGCATCCCTGTGCTTATA
GG
Found at i:77552450 original size:13 final size:13
Alignment explanation
Indices: 77552432--77552544 Score: 99
Period size: 13 Copynumber: 9.6 Consensus size: 13
77552422 AAATATCTTT
77552432 ACTCCACTAAACC
1 ACTCCACTAAACC
77552445 ACT-C-C--AACC
1 ACTCCACTAAACC
77552454 ACT-C-C-AA-CC
1 ACTCCACTAAACC
*
77552463 ACTTCACTAAACC
1 ACTCCACTAAACC
77552476 ACTCCACTAAACC
1 ACTCCACTAAACC
*
77552489 ACTACACTAAACC
1 ACTCCACTAAACC
*
77552502 ACTCGACTAAACC
1 ACTCCACTAAACC
77552515 AC-CC-C--AACC
1 ACTCCACTAAACC
77552524 AC-CCTACTAAACC
1 ACTCC-ACTAAACC
77552537 ACTCCACT
1 ACTCCACT
77552545 TGCCTTCAAA
Statistics
Matches: 85, Mismatches: 5, Indels: 20
0.77 0.05 0.18
Matches are distributed among these distances:
9 22 0.26
10 2 0.02
11 4 0.05
12 4 0.05
13 51 0.60
14 2 0.02
ACGTcount: A:0.37, C:0.47, G:0.01, T:0.15
Consensus pattern (13 bp):
ACTCCACTAAACC
Found at i:77552455 original size:9 final size:9
Alignment explanation
Indices: 77552441--77552465 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
77552431 TACTCCACTA
77552441 AACCACTCC
1 AACCACTCC
77552450 AACCACTCC
1 AACCACTCC
77552459 AACCACT
1 AACCACT
77552466 TCACTAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.36, C:0.52, G:0.00, T:0.12
Consensus pattern (9 bp):
AACCACTCC
Found at i:77552949 original size:12 final size:13
Alignment explanation
Indices: 77552932--77553019 Score: 56
Period size: 12 Copynumber: 6.6 Consensus size: 13
77552922 AGAGCTTTGT
77552932 TTTATT-TTTTTA
1 TTTATTATTTTTA
77552944 TTTATTATTTTTA
1 TTTATTATTTTTA
* *
77552957 -CTATTATTTATA
1 TTTATTATTTTTA
*
77552969 TTATTATTATTTCTCA
1 -T-TTATTATTT-TTA
* *
77552985 TGTATATATTATTA
1 TTTAT-TATTTTTA
*
77552999 TTTA-TATTATTA
1 TTTATTATTTTTA
77553011 TTATATTAT
1 TT-TATTAT
77553020 ATATGCCCTC
Statistics
Matches: 59, Mismatches: 9, Indels: 14
0.72 0.11 0.17
Matches are distributed among these distances:
12 26 0.44
13 8 0.14
14 11 0.19
15 13 0.22
16 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.67
Consensus pattern (13 bp):
TTTATTATTTTTA
Found at i:77552951 original size:3 final size:3
Alignment explanation
Indices: 77552945--77553019 Score: 50
Period size: 3 Copynumber: 24.3 Consensus size: 3
77552935 ATTTTTTTAT
* *
77552945 TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT- TCTCA TGTA TATA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-T-A T-TA T-TA
77552993 TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
77553020 ATATGCCCTC
Statistics
Matches: 58, Mismatches: 6, Indels: 16
0.73 0.08 0.20
Matches are distributed among these distances:
2 5 0.09
3 44 0.76
4 7 0.12
5 2 0.03
ACGTcount: A:0.31, C:0.04, G:0.01, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:77553100 original size:3 final size:3
Alignment explanation
Indices: 77553094--77553144 Score: 50
Period size: 3 Copynumber: 16.0 Consensus size: 3
77553084 TTCTGACTAC
*
77553094 TAT TAT TAT ATAT ATAT GTAT TAT TGT T-T GTAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT -TAT -TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT
77553142 TAT
1 TAT
77553145 CACCCTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
2 1 0.02
3 31 0.72
4 11 0.26
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:77553441 original size:127 final size:121
Alignment explanation
Indices: 77553219--77553443 Score: 290
Period size: 127 Copynumber: 1.8 Consensus size: 121
77553209 TTATTTTTAC
* * *
77553219 TATTACTATTATTATTATATATTAGTGTATATTTTTATGTATATATATATTTATATATAGTATTG
1 TATTACTATTATTATTATATAGTAGTGTATATTTTTATATATATATATATTTATATATAGTATTA
* *
77553284 TTTTTTATTACTTTAATTTAATATTTTTATTATATTTGCTTTTTGTATTTCTATATT
66 TTATTTATTACTTTAA-TTAATATTCTTATTATATTTGCTTTTTGTATTTCTATATT
* * *
77553341 TATTATTATTATTTTTATATAGTAGTGTGTATTTCTATTATATACATATATATATTTATATATAG
1 TATTACTATTATTATTATATAGTAGTGTATA-TT-T-TTATAT--ATATATATATTTATATATAG
*
77553406 TATTATTATTTACTTTACTTTAA-TATTATTCTTATTAT
61 TATTATTATTTA--TTACTTTAATTAATATTCTTATTAT
77553444 CATTATATCC
Statistics
Matches: 87, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
122 27 0.31
123 2 0.02
124 1 0.01
125 5 0.06
127 43 0.49
129 9 0.10
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.60
Consensus pattern (121 bp):
TATTACTATTATTATTATATAGTAGTGTATATTTTTATATATATATATATTTATATATAGTATTA
TTATTTATTACTTTAATTAATATTCTTATTATATTTGCTTTTTGTATTTCTATATT
Found at i:77555652 original size:15 final size:14
Alignment explanation
Indices: 77555632--77555681 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
77555622 TATTTAGGCA
77555632 ATTTTTGAAGTTTTG
1 ATTTTTGAA-TTTTG
* * *
77555647 ATTTTTTATTTTTT
1 ATTTTTGAATTTTG
77555661 ATTTTTGAATTTTG
1 ATTTTTGAATTTTG
77555675 ACTTTTT
1 A-TTTTT
77555682 TGTTTTTGGG
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.18, C:0.02, G:0.10, T:0.70
Consensus pattern (14 bp):
ATTTTTGAATTTTG
Found at i:77555665 original size:29 final size:29
Alignment explanation
Indices: 77555632--77555688 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
77555622 TATTTAGGCA
77555632 ATTTTTGAAGTTTTGA-TTTTTTATTTTTT
1 ATTTTTGAA-TTTTGACTTTTTTATTTTTT
*
77555661 ATTTTTGAATTTTGACTTTTTTGTTTTT
1 ATTTTTGAATTTTGACTTTTTTATTTTT
77555689 GGGTTCGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 6 0.23
29 20 0.77
ACGTcount: A:0.16, C:0.02, G:0.11, T:0.72
Consensus pattern (29 bp):
ATTTTTGAATTTTGACTTTTTTATTTTTT
Found at i:77555680 original size:22 final size:21
Alignment explanation
Indices: 77555642--77555689 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
77555632 ATTTTTGAAG
* *
77555642 TTTTGATTTTTTATTTTTTAT
1 TTTTGAATTTTGATTTTTTAT
*
77555663 TTTTGAATTTTGACTTTTTTGT
1 TTTTGAATTTTGA-TTTTTTAT
77555685 TTTTG
1 TTTTG
77555690 GGTTCGTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.12, C:0.02, G:0.10, T:0.75
Consensus pattern (21 bp):
TTTTGAATTTTGATTTTTTAT
Found at i:77559884 original size:173 final size:173
Alignment explanation
Indices: 77559595--77559949 Score: 694
Period size: 173 Copynumber: 2.1 Consensus size: 173
77559585 GGGAGATGTG
77559595 CTAAAAATTAACATGACGGGCTTTTAATGATTCGGATAGGTCAAGGGAGATCGGTGTCACTGTCA
1 CTAAAAATTAACATGACGGGCTTTTAATGATTCGGATAGGTCAAGGGAGATCGGTGTCACTGTCA
77559660 GAGATCATAATGAGTTTGTGGCGGAGGGAAATGCACGAACATTATAGAGCTTGGTGAATGAGGTT
66 GAGATCATAATGAGTTTGTGGCGGAGGGAAATGCACGAACATTATAGAGCTTGGTGAATGAGGTT
77559725 ATTGCGATTATCATTACCTTCAAATGTTGTAATTGAAATTTCT
131 ATTGCGATTATCATTACCTTCAAATGTTGTAATTGAAATTTCT
77559768 CTAAAAATTAACATGACGGGCTTTTAATGATTCGGATAGGTCAAGGGAGATCGGTGTCACTGTCA
1 CTAAAAATTAACATGACGGGCTTTTAATGATTCGGATAGGTCAAGGGAGATCGGTGTCACTGTCA
77559833 GAGATCATAATGAGTTTGTGGCGGAGGGAAATGCACGAACATTATAGAGCTTGGTGAATGAGGTT
66 GAGATCATAATGAGTTTGTGGCGGAGGGAAATGCACGAACATTATAGAGCTTGGTGAATGAGGTT
77559898 ATTGCGATTATCATTACCTTCAAATGTTGTAATTGAAATTTCT
131 ATTGCGATTATCATTACCTTCAAATGTTGTAATTGAAATTTCT
*
77559941 C-AAATATTA
1 CTAAAAATTA
77559950 TAGTTGAGGG
Statistics
Matches: 181, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
172 7 0.04
173 174 0.96
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.31
Consensus pattern (173 bp):
CTAAAAATTAACATGACGGGCTTTTAATGATTCGGATAGGTCAAGGGAGATCGGTGTCACTGTCA
GAGATCATAATGAGTTTGTGGCGGAGGGAAATGCACGAACATTATAGAGCTTGGTGAATGAGGTT
ATTGCGATTATCATTACCTTCAAATGTTGTAATTGAAATTTCT
Found at i:77565661 original size:12 final size:12
Alignment explanation
Indices: 77565644--77565711 Score: 54
Period size: 12 Copynumber: 5.8 Consensus size: 12
77565634 CTTTCTCCCT
77565644 TTTTTCACCTCA
1 TTTTTCACCTCA
*
77565656 TTTTTCACCTGAA
1 TTTTTCACCT-CA
* *
77565669 TTTTTCGATCGC-
1 TTTTTC-ACCTCA
*
77565681 TTTCTC-CCT--
1 TTTTTCACCTCA
77565690 TTTTTCACCTCA
1 TTTTTCACCTCA
77565702 TTTTTCACCT
1 TTTTTCACCT
77565712 GAATTTTTTT
Statistics
Matches: 43, Mismatches: 8, Indels: 10
0.70 0.13 0.16
Matches are distributed among these distances:
9 5 0.12
10 4 0.09
12 25 0.58
13 7 0.16
14 2 0.05
ACGTcount: A:0.13, C:0.31, G:0.04, T:0.51
Consensus pattern (12 bp):
TTTTTCACCTCA
Found at i:77565673 original size:46 final size:46
Alignment explanation
Indices: 77565622--77565720 Score: 189
Period size: 46 Copynumber: 2.2 Consensus size: 46
77565612 CTTTCTTCTC
77565622 ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
1 ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
*
77565668 ATTTTTCGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
1 ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
77565714 ATTTTTT
1 ATTTTTT
77565721 TCCTGAAATT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 51 1.00
ACGTcount: A:0.13, C:0.27, G:0.06, T:0.54
Consensus pattern (46 bp):
ATTTTTTGATCGCTTTCTCCCTTTTTTCACCTCATTTTTCACCTGA
Found at i:77566286 original size:19 final size:19
Alignment explanation
Indices: 77566259--77566295 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
77566249 TATTATTACC
*
77566259 AATTTAGTTAATTTTAATT
1 AATTCAGTTAATTTTAATT
77566278 AATTCAGTTAATTTTAAT
1 AATTCAGTTAATTTTAAT
77566296 CTGATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.54
Consensus pattern (19 bp):
AATTCAGTTAATTTTAATT
Found at i:77567295 original size:47 final size:47
Alignment explanation
Indices: 77567241--77567334 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
77567231 TGTTTAAACC
77567241 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
1 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
77567288 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
1 CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
77567335 TTAGAATCAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.38
Consensus pattern (47 bp):
CTAAAACTAATATTGAAATACATATTTATTTAAGCTATTACATTGGA
Found at i:77568065 original size:6 final size:6
Alignment explanation
Indices: 77568046--77568076 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
77568036 GGGTTTGTAT
*
77568046 TTTCTG TTTTTG TTTCTG TTTCTG TTTCTG T
1 TTTCTG TTTCTG TTTCTG TTTCTG TTTCTG T
77568077 GGGAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.00, C:0.13, G:0.16, T:0.71
Consensus pattern (6 bp):
TTTCTG
Found at i:77572400 original size:27 final size:27
Alignment explanation
Indices: 77572335--77572404 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
77572325 CAGATTTTAG
* *
77572335 ATTGTTGGATTTTGATATATGTCTTGA
1 ATTGTTGGATATTGATATATGTCTTAA
* *
77572362 ATTGGTTAGATATTGAT-TATGTTTTAA
1 ATT-GTTGGATATTGATATATGTCTTAA
77572389 CATTGTTGGATATTGA
1 -ATTGTTGGATATTGA
77572405 ATTGATTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.26, C:0.03, G:0.21, T:0.50
Consensus pattern (27 bp):
ATTGTTGGATATTGATATATGTCTTAA
Found at i:77572409 original size:32 final size:33
Alignment explanation
Indices: 77572373--77572440 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 33
77572363 TTGGTTAGAT
77572373 ATTG-ATTATGTTTTAA-CATTGTTGGATATTGA
1 ATTGTATTATGTTTTAAGC-TTGTTGGATATTGA
77572405 ATTGATTATTATGTTTTAAGCTTGTTGGATATTGA
1 ATTG--TATTATGTTTTAAGCTTGTTGGATATTGA
77572440 A
1 A
77572441 ATTATTGATA
Statistics
Matches: 32, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
32 4 0.12
35 27 0.84
36 1 0.03
ACGTcount: A:0.28, C:0.03, G:0.19, T:0.50
Consensus pattern (33 bp):
ATTGTATTATGTTTTAAGCTTGTTGGATATTGA
Found at i:77573815 original size:34 final size:35
Alignment explanation
Indices: 77573749--77573815 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
77573739 CAAACACCAG
*
77573749 AAAATATTTTCCAGTAAGTCATTTTGCAGAAAAGT
1 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
* *
77573784 AAAATATTTTCCAG-AATTCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAGTCATTTTACAGAAAA
77573816 CATTTTACAG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 15 0.52
35 14 0.48
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
Found at i:77574827 original size:22 final size:22
Alignment explanation
Indices: 77574793--77574836 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
77574783 TATAATCTAT
*
77574793 TTTTATAAAAAAATATTTAAAA
1 TTTTATAAAAAAATATATAAAA
77574815 TTTTA-AAAGAAAATATATAAAA
1 TTTTATAAA-AAAATATATAAAA
77574837 ATCATATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (22 bp):
TTTTATAAAAAAATATATAAAA
Found at i:77590202 original size:14 final size:14
Alignment explanation
Indices: 77590179--77590216 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
77590169 ATTAACACTG
77590179 CATATATATATGTA
1 CATATATATATGTA
* *
77590193 TATGTATATATGTA
1 CATATATATATGTA
77590207 CATATATATA
1 CATATATATA
77590217 GTTATTGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.45
Consensus pattern (14 bp):
CATATATATATGTA
Found at i:77591022 original size:4 final size:4
Alignment explanation
Indices: 77591013--77591050 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
77591003 CCAAAGGTAG
*
77591013 ACAT ACAT ACAT ATAT ACAGT -CAT ACAT ACAT ACAT AC
1 ACAT ACAT ACAT ACAT ACA-T ACAT ACAT ACAT ACAT AC
77591051 TTTCTGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 1 0.03
4 28 0.93
5 1 0.03
ACGTcount: A:0.47, C:0.24, G:0.03, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:77593258 original size:21 final size:22
Alignment explanation
Indices: 77593232--77593278 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
77593222 CTCTGCTCAA
*
77593232 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
77593253 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
77593275 ACTC
1 ACTC
77593279 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:77600130 original size:31 final size:31
Alignment explanation
Indices: 77600095--77600156 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
77600085 TACTTGAAAC
* *
77600095 TTTAATTATAGTTCAAATGTATACATAAAAA
1 TTTAATTATAATTCAAATGTACACATAAAAA
* * *
77600126 TTTAATTTTAATTTAATTGTACACATAAAAA
1 TTTAATTATAATTCAAATGTACACATAAAAA
77600157 ATAAATAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.47, C:0.06, G:0.05, T:0.42
Consensus pattern (31 bp):
TTTAATTATAATTCAAATGTACACATAAAAA
Found at i:77600296 original size:31 final size:29
Alignment explanation
Indices: 77600261--77600320 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
77600251 GGTTATAATT
*
77600261 TATAAAAGTTGAATCAAATTAAAATATTATA
1 TATAAAA-TTGAATAAAATTAAAAT-TTATA
**
77600292 TATAAAATTTTATAAAATTAAAATTTATA
1 TATAAAATTGAATAAAATTAAAATTTATA
77600321 ATTTTGAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 5 0.19
30 14 0.54
31 7 0.27
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (29 bp):
TATAAAATTGAATAAAATTAAAATTTATA
Found at i:77600320 original size:15 final size:15
Alignment explanation
Indices: 77600276--77600338 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 15
77600266 AAGTTGAATC
77600276 AAATTAAAATATTAT-
1 AAATTAAAAT-TTATA
*
77600291 ATA-TAAAATTTTATA
1 AAATTAAAA-TTTATA
77600306 AAATTAAAATTTATA
1 AAATTAAAATTTATA
** *
77600321 ATTTTGAAATTTATA
1 AAATTAAAATTTATA
77600336 AAA
1 AAA
77600339 AAAATAGTAC
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
14 9 0.24
15 24 0.63
16 5 0.13
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (15 bp):
AAATTAAAATTTATA
Found at i:77601181 original size:10 final size:10
Alignment explanation
Indices: 77601168--77601197 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
77601158 CAAAATTGAA
77601168 AAAAAAAAAG
1 AAAAAAAAAG
*
77601178 AAAAAAGAAG
1 AAAAAAAAAG
77601188 AAAAAAAAAG
1 AAAAAAAAAG
77601198 GCTTACCTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:77601553 original size:29 final size:32
Alignment explanation
Indices: 77601520--77601581 Score: 76
Period size: 31 Copynumber: 2.0 Consensus size: 32
77601510 TTATTAAAAG
77601520 TAAT-ATAAAATTT-TATAAATTTT-ACATAT
1 TAATAATAAAATTTATATAAATTTTGACATAT
** *
77601549 TAATAATTTATTTTATATAAATTTTGACATAT
1 TAATAATAAAATTTATATAAATTTTGACATAT
77601581 T
1 T
77601582 TGTATATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 4 0.15
30 6 0.22
31 10 0.37
32 7 0.26
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.52
Consensus pattern (32 bp):
TAATAATAAAATTTATATAAATTTTGACATAT
Found at i:77605274 original size:16 final size:16
Alignment explanation
Indices: 77605253--77605283 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
77605243 GTAAAAAATA
77605253 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
77605269 ATATAAAATTTATAA
1 ATATAAAATTTATAA
77605284 ATAATATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:77605294 original size:16 final size:16
Alignment explanation
Indices: 77605248--77605295 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
77605238 TTTAAGTAAA
77605248 AAATAATATAAAATTTAT
1 AAATAATAT--AATTTAT
*
77605266 -AATATATAAAATTTAT
1 AAATA-ATATAATTTAT
77605282 AAATAATATAATTT
1 AAATAATATAATTT
77605296 TTTTCGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 15 0.58
17 8 0.31
18 3 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AAATAATATAATTTAT
Found at i:77605884 original size:133 final size:133
Alignment explanation
Indices: 77605631--77605891 Score: 352
Period size: 133 Copynumber: 2.0 Consensus size: 133
77605621 AAACTCACGT
* *
77605631 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAGTAATTTTTAAAATTGAATTTTGG
1 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTGAATTATGG
** ** * * *
77605696 TATAATTATTTGTGTAATTACTCCAATTCTCACTCTTCCTCTAAGAATTGAAAAGTGTAATTGGA
66 TATAATTACCTGCATAACTACTCAAATTCTCACCCTTCCTCTAAGAATTGAAAAGTGTAATTGGA
77605761 TAC
131 TAC
77605764 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTTG-ATCTGA
1 ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAA-TTGAAT-T--
*
77605828 AT-GTA-AATTACCTGCATAACTACTCAAATTCTCACCCTTCC-CTTAAG-ATTGGAAAGTGTAA
62 ATGGTATAATTACCTGCATAACTACTCAAATTCTCACCCTTCCTC-TAAGAATTGAAAAGTGTAA
77605889 TTG
126 TTG
77605892 AGTTGCTCCA
Statistics
Matches: 113, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
133 72 0.64
134 37 0.33
135 3 0.03
136 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42
Consensus pattern (133 bp):
ATGTTCATGGTTATAATATAATTTTTATAACTTGTATAAAAATAATTTTTAAAATTGAATTATGG
TATAATTACCTGCATAACTACTCAAATTCTCACCCTTCCTCTAAGAATTGAAAAGTGTAATTGGA
TAC
Found at i:77610060 original size:17 final size:19
Alignment explanation
Indices: 77610031--77610072 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
77610021 TATGACTTTT
77610031 AAAAGTAAAAACT-AAAAA
1 AAAAGTAAAAACTGAAAAA
*
77610049 TAAAGT-AAAACTGAAAAA
1 AAAAGTAAAAACTGAAAAA
77610067 AAAAGT
1 AAAAGT
77610073 GAACGATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.14
Consensus pattern (19 bp):
AAAAGTAAAAACTGAAAAA
Found at i:77616548 original size:26 final size:26
Alignment explanation
Indices: 77616519--77616568 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
77616509 AAACCGATTA
77616519 AGATTAATTACAATAAATTAAATCTG
1 AGATTAATTACAATAAATTAAATCTG
* *
77616545 AGATTGATTACAGTAAATTAAATC
1 AGATTAATTACAATAAATTAAATC
77616569 AGTTGATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (26 bp):
AGATTAATTACAATAAATTAAATCTG
Found at i:77617588 original size:27 final size:28
Alignment explanation
Indices: 77617536--77617588 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
77617526 TTTATAAGTG
*
77617536 AAAGAAAATACATGCACTATGATGGTGA
1 AAAGAAAATACATGCACAATGATGGTGA
77617564 AAAGAAAATACATGCACAATG-TGGT
1 AAAGAAAATACATGCACAATGATGGT
77617589 CAATGACTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 4 0.17
28 20 0.83
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (28 bp):
AAAGAAAATACATGCACAATGATGGTGA
Found at i:77621374 original size:53 final size:53
Alignment explanation
Indices: 77621309--77621411 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
77621299 GATATCTAAA
* * * *
77621309 TTATTAACTTAATTTAATTTGATCCAAAGAATACGACAATTAGGAAAAAAAAC
1 TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAAAAC
* * *
77621362 TTATTAATTTAATTTAATATAACCCAAAGAATATAATAATTAGGAAAAAA
1 TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAA
77621412 CTATACACAA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (53 bp):
TTATTAACTTAATTTAATATAACCCAAAGAATACAACAATTAGGAAAAAAAAC
Found at i:77631908 original size:13 final size:13
Alignment explanation
Indices: 77631890--77631915 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77631880 TAAACTCAAG
77631890 TTTAATAATATAA
1 TTTAATAATATAA
77631903 TTTAATAATATAA
1 TTTAATAATATAA
77631916 AAAAGTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTTAATAATATAA
Found at i:77632399 original size:5 final size:5
Alignment explanation
Indices: 77632389--77632420 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
77632379 CGAAATGTGA
77632389 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
77632421 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:77632412 original size:9 final size:9
Alignment explanation
Indices: 77632390--77632420 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
77632380 GAAATGTGAA
77632390 AAATAAAAT
1 AAATAAAAT
77632399 AAAATAAAAT
1 -AAATAAAAT
77632409 AAATAAAAT
1 AAATAAAAT
77632418 AAA
1 AAA
77632421 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:77636838 original size:5 final size:5
Alignment explanation
Indices: 77636828--77636859 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
77636818 CAATTTGTGA
77636828 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
77636860 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:77636853 original size:9 final size:9
Alignment explanation
Indices: 77636829--77636859 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
77636819 AATTTGTGAA
77636829 AAATAAAAT
1 AAATAAAAT
77636838 AAAATAAAAT
1 -AAATAAAAT
77636848 AAATAAAAT
1 AAATAAAAT
77636857 AAA
1 AAA
77636860 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:77642078 original size:28 final size:28
Alignment explanation
Indices: 77642024--77642080 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
77642014 AAAATCCGTC
*
77642024 ATTTTATAAAATGAGAAATTATCTTTTA
1 ATTTTATAAAATGAGAAATAATCTTTTA
* *
77642052 ATTTTAT-AAATGATGATATAATTTTTTA
1 ATTTTATAAAATGA-GAAATAATCTTTTA
77642080 A
1 A
77642081 AAAATTATGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 6 0.24
28 19 0.76
ACGTcount: A:0.42, C:0.02, G:0.07, T:0.49
Consensus pattern (28 bp):
ATTTTATAAAATGAGAAATAATCTTTTA
Found at i:77642385 original size:15 final size:15
Alignment explanation
Indices: 77642365--77642394 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
77642355 TTATTTCGAT
77642365 TAATTTAAAAAATAA
1 TAATTTAAAAAATAA
77642380 TAATTTAAAAAATAA
1 TAATTTAAAAAATAA
77642395 ATTGTTAGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATTTAAAAAATAA
Found at i:77648229 original size:26 final size:26
Alignment explanation
Indices: 77648200--77648254 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
77648190 TTAAAAATGG
77648200 TTAAAATAAAACATAAAGAATCAGTT
1 TTAAAATAAAACATAAAGAATCAGTT
77648226 TTAAAATAAAACATAAAGAATCAGTT
1 TTAAAATAAAACATAAAGAATCAGTT
77648252 TTA
1 TTA
77648255 CTTGAAACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.56, C:0.07, G:0.07, T:0.29
Consensus pattern (26 bp):
TTAAAATAAAACATAAAGAATCAGTT
Found at i:77655079 original size:5 final size:5
Alignment explanation
Indices: 77655069--77655094 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
77655059 TCTAGAACAA
77655069 ATGTC ATGTC ATGTC ATGTC ATGTC A
1 ATGTC ATGTC ATGTC ATGTC ATGTC A
77655095 ACAACTACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATGTC
Found at i:77656165 original size:29 final size:30
Alignment explanation
Indices: 77656107--77656176 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 30
77656097 GTTTTAAAAT
*
77656107 TATATATGAATTTTGATTTAATGTAGAATTA
1 TATATATGAATTTTAATTTAATGTA-AATTA
*
77656138 TATATATGAATTTTAATTTAGTGT-AATTA
1 TATATATGAATTTTAATTTAATGTAAATTA
*
77656167 TATACATGAA
1 TATATATGAA
77656177 ACTCTAATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 14 0.39
31 22 0.61
ACGTcount: A:0.40, C:0.01, G:0.11, T:0.47
Consensus pattern (30 bp):
TATATATGAATTTTAATTTAATGTAAATTA
Found at i:77656202 original size:31 final size:30
Alignment explanation
Indices: 77656167--77656232 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 30
77656157 AGTGTAATTA
77656167 TATACATGAAACTCTAATTGTGATTTAAATC
1 TATACATGAAACTCTAATTGTGATTT-AATC
* * * *
77656198 TATACTTGAAATTTTAATTTTGATTTAATC
1 TATACATGAAACTCTAATTGTGATTTAATC
77656228 -ATACA
1 TATACA
77656233 CATTTAAAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 4 0.13
30 4 0.13
31 22 0.73
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.44
Consensus pattern (30 bp):
TATACATGAAACTCTAATTGTGATTTAATC
Found at i:77657888 original size:18 final size:18
Alignment explanation
Indices: 77657851--77657888 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
77657841 TTGGCCGTGG
*
77657851 ACCAAATTAAATATTGAA
1 ACCAAATTAAATATTCAA
77657869 ACCAAATTCAAATA-TCAA
1 ACCAAATT-AAATATTCAA
77657887 AC
1 AC
77657889 GAGGACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.55, C:0.18, G:0.03, T:0.24
Consensus pattern (18 bp):
ACCAAATTAAATATTCAA
Found at i:77660617 original size:18 final size:19
Alignment explanation
Indices: 77660596--77660638 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
77660586 TTGTATTCTC
* *
77660596 AAAAAAAAATCAA-AGATA
1 AAAAAAAAACCAACAAATA
*
77660614 AAAAATAAACCAACAAATA
1 AAAAAAAAACCAACAAATA
77660633 AAAAAA
1 AAAAAA
77660639 TCCAAAAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.79, C:0.09, G:0.02, T:0.09
Consensus pattern (19 bp):
AAAAAAAAACCAACAAATA
Found at i:77661727 original size:43 final size:42
Alignment explanation
Indices: 77661653--77661738 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 42
77661643 GGTGATCCTT
* *
77661653 CATGAATTTTGTTTGAGTATTCTAGACACCACTTGTTACAAA
1 CATGAATTTTATTTAAGTATTCTAGACACCACTTGTTACAAA
*
77661695 CATGAATTTTATTTAAGTTATTCTAGAGACCACTTGTTACAAA
1 CATGAATTTTATTTAAG-TATTCTAGACACCACTTGTTACAAA
77661738 C
1 C
77661739 CCTCTTTTAG
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
42 15 0.38
43 25 0.62
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (42 bp):
CATGAATTTTATTTAAGTATTCTAGACACCACTTGTTACAAA
Found at i:77662882 original size:106 final size:106
Alignment explanation
Indices: 77662734--77662945 Score: 424
Period size: 106 Copynumber: 2.0 Consensus size: 106
77662724 GCAAACATAG
77662734 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
1 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
77662799 CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
66 CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
77662840 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
1 GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
77662905 CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
66 CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
77662946 ACTTCCATAC
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 106 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (106 bp):
GGTGAGGTGTTACGGCTAGCTAAACGGGATGTCCATGACAATAGCCTTCTTTGCCCAATCTTTAG
CCTCTTTTTACACTTATCGATTCACTAGTTCTGATCTCACC
Found at i:77663980 original size:11 final size:11
Alignment explanation
Indices: 77663964--77663992 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
77663954 TTCGTTGAAA
77663964 GTCTTTATAAT
1 GTCTTTATAAT
77663975 GTCTTTATAAT
1 GTCTTTATAAT
77663986 GTCTTTA
1 GTCTTTA
77663993 CTTGACTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.24, C:0.10, G:0.10, T:0.55
Consensus pattern (11 bp):
GTCTTTATAAT
Found at i:77664218 original size:32 final size:32
Alignment explanation
Indices: 77664177--77664241 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
77664167 TAACTATGAG
77664177 TACGGGAAGGATTGTTTCCATGTAACAGAACT
1 TACGGGAAGGATTGTTTCCATGTAACAGAACT
77664209 TACGGGAAGGATTGTTTCCATGTAACAGAACT
1 TACGGGAAGGATTGTTTCCATGTAACAGAACT
77664241 T
1 T
77664242 CAAATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (32 bp):
TACGGGAAGGATTGTTTCCATGTAACAGAACT
Found at i:77664867 original size:30 final size:30
Alignment explanation
Indices: 77664831--77664915 Score: 143
Period size: 30 Copynumber: 2.8 Consensus size: 30
77664821 ACTTTTCTCA
77664831 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
*
77664861 ACTAGCCACTCTTTTTCCACCACCAACTCC
1 ACTAGCCACTCCTTTTCCACCACCAACTCC
* *
77664891 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACTCCTTTTCCACCACCA
77664916 CTTGTACCTA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.22
Consensus pattern (30 bp):
ACTAGCCACTCCTTTTCCACCACCAACTCC
Found at i:77665524 original size:25 final size:25
Alignment explanation
Indices: 77665496--77665639 Score: 78
Period size: 25 Copynumber: 5.6 Consensus size: 25
77665486 ATATTACGTA
* *
77665496 TATATATATTTTATACTATTTTATG
1 TATATATATTTAATACTATATTATG
* * *
77665521 TATATATCTTTAATATTATATTATTTATA
1 TATATATATTTAATA--CTA-TA-TTATG
** *
77665550 TATATATATTTTTACATGTTATCTTATG
1 TATATATA--TTTA-ATACTATATTATG
*
77665578 TATATAT-CTT-A-ACTATATTATG
1 TATATATATTTAATACTATATTATG
* * *
77665600 TATGTATTTTTAACACTATATTATG
1 TATATATATTTAATACTATATTATG
* *
77665625 TACATATTTTTAATA
1 TATATATATTTAATA
77665640 TTATCACGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 20
0.70 0.15 0.16
Matches are distributed among these distances:
22 14 0.16
23 3 0.03
24 1 0.01
25 38 0.42
27 2 0.02
28 12 0.13
29 12 0.13
30 2 0.02
31 4 0.04
32 2 0.02
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATG
Found at i:77665546 original size:30 final size:28
Alignment explanation
Indices: 77665484--77665587 Score: 79
Period size: 27 Copynumber: 3.7 Consensus size: 28
77665474 TATTTTAAAT
* * * *
77665484 TTATATTACGTATATATATATT-TTATA
1 TTATTTTATGTATATATCTTTTATTATA
*
77665511 CTATTTTATGTATATATCTTTAATATTATA
1 TTATTTTATGTATATATCTTT--TATTATA
* * *
77665541 TTATTTATATATATATAT-TTTTA-CATG
1 TTATTT-TATGTATATATCTTTTATTATA
*
77665568 TTATCTTATGTATATATCTT
1 TTATTTTATGTATATATCTT
77665588 AACTATATTA
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
26 10 0.16
27 25 0.41
28 2 0.03
29 1 0.02
30 13 0.21
31 10 0.16
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTTATGTATATATCTTTTATTATA
Found at i:77665642 original size:20 final size:20
Alignment explanation
Indices: 77665617--77665672 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
77665607 TTTTAACACT
77665617 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
* * *
77665637 ATATTAT-CACGTATTTTTT
1 ATATTATGTACATATTTTTA
*
77665656 TTATATATGTACATATT
1 ATAT-TATGTACATATT
77665673 GATGTAGTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
19 12 0.43
20 10 0.36
21 6 0.21
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:77665777 original size:16 final size:16
Alignment explanation
Indices: 77665758--77665838 Score: 60
Period size: 16 Copynumber: 4.8 Consensus size: 16
77665748 ATTTCTATTT
77665758 TATTTT-TTATTTTCAA
1 TATTTTATTATTTT-AA
77665774 TATTAATTATTATTATTCTAA
1 TATT--TTATTA-T-TT-TAA
*
77665795 TATTTTGA-TATTTTGA
1 TATTTT-ATTATTTTAA
77665811 TATTTTA-TATTTTATA
1 TATTTTATTATTTTA-A
77665827 TATTTTATTATT
1 TATTTTATTATT
77665839 CACATCATTA
Statistics
Matches: 54, Mismatches: 2, Indels: 17
0.74 0.03 0.23
Matches are distributed among these distances:
15 7 0.13
16 20 0.37
17 6 0.11
18 3 0.06
19 7 0.13
20 2 0.04
21 8 0.15
22 1 0.02
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTTTATTATTTTAA
Found at i:77665822 original size:7 final size:8
Alignment explanation
Indices: 77665794--77665827 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
77665784 TATTATTCTA
77665794 ATATTTTG
1 ATATTTTG
77665802 ATATTTTG
1 ATATTTTG
77665810 ATATTTT-
1 ATATTTTG
77665817 ATATTTT-
1 ATATTTTG
77665824 ATAT
1 ATAT
77665828 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (8 bp):
ATATTTTG
Found at i:77674296 original size:68 final size:69
Alignment explanation
Indices: 77674131--77674304 Score: 199
Period size: 70 Copynumber: 2.5 Consensus size: 69
77674121 CTTTCCAAGG
* ** *
77674131 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
77674196 TTTT
66 TTTT
* * * * *
77674200 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGATGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTT-
77674264 TGTTTT
64 TGTTTT
** * *
77674270 -AAATTGACTCATATTGTGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
77674305 TTTAATTTTT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
68 30 0.34
69 19 0.21
70 40 0.45
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTTG
TTTT
Found at i:77674448 original size:76 final size:76
Alignment explanation
Indices: 77674322--77674729 Score: 503
Period size: 76 Copynumber: 5.4 Consensus size: 76
77674312 TTTGTTTTTC
* * *
77674322 AAAATCAACTCATATTGCTAGAGGTGGGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
77674387 GTTGTT-AAAAA
66 GTT-TTAAAAAA
**
77674398 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
77674463 GTTTT----CA
66 GTTTTAAAAAA
* * ** * * *
77674470 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
77674535 GTTTTCAAAAA
66 GTTTTAAAAAA
* * *
77674546 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
77674610 TCTGTTTTTAAAAAA
63 TCTG-TTTTAAAAAA
*
77674625 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
77674690 GTTTGT----CA
66 GTTT-TAAAAAA
* *
77674698 AGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA
77674730 ACCTTTTAAT
Statistics
Matches: 296, Mismatches: 26, Indels: 23
0.86 0.08 0.07
Matches are distributed among these distances:
72 66 0.22
73 31 0.10
75 3 0.01
76 101 0.34
77 24 0.08
78 24 0.08
79 45 0.15
80 2 0.01
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAAA
Found at i:77674576 original size:148 final size:148
Alignment explanation
Indices: 77674308--77675485 Score: 629
Period size: 148 Copynumber: 7.9 Consensus size: 148
77674298 TAAGCCTTTT
* * * * *
77674308 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGGGTTGAGCCTCAGGACATGCTGAGG
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
**
77674373 TAATTTCAATTTCTGTTGTT-AAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
66 TAATTTCAATTTCTGTT-TTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G
77674437 G-ACACGCTGAGGTAATTTC
129 GTACACGCTGAGGTAATTTC
* ** * *
77674456 AATTTCTG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
* *
77674520 GTATTTTCAATTTCTGTTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGG
65 GTAATTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* *
77674585 TTCACATGCTGAGGTATTTTC
130 -T-ACACGCTGAGGTAATTTC
*
77674606 AATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
1 AATTTCTGTTTTT-----CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
* * *
77674671 TGAGGTAATTTCAATTTCTGTTTGTC----AAGAATCAACTCATATTGCGAGAGGTGGGTTGAAC
61 TGAGGTAATTTCAATTTCTGTTT-TCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
77674732 CT---T------T----TAATTTC
125 CTCGGTACACGCTGAGGTAATTTC
* **** * * * * *
77674743 TA-TT-T-TTCAAA---ATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
* * * **
77674802 TATTTTCAATTTTTGTGTTT-----TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
66 TAATTTCAATTTCTGT-TTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-G
*
77674862 G-ACACGCTGAGGTATTTTC
129 GTACACGCTGAGGTAATTTC
* * *** * ** * * * * *
77674881 AATTT-TCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAG-TGAG-TTG
1 AATTTCT-G-TTTTTCAA---A---ATCAACTCATAT-TGC-GAGA--G-GTG-AGTTGAGCCTC
* * * *
77674943 AGCCTCAAGACGCTGAGGTAATTTCAATTTTTGTTTGTC----AAAAATCAACTCATATTGCGAG
52 AG----GACACGATGAGGTAATTTCAATTTCTGTTT-TCAAAAAAAAATCAACTCATATTGCGAG
** *
77675004 AGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTGGTTTT
112 AGGTGAGTTGAGCCTC-GGTACACGCTGAGGTAATTTC
* * ** * * * * *
77675041 AATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCT
1 AATTTCTGTT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGAT
* *** *
77675105 GAGGTATTTTCAATTTCTGGTTTTCAATTTCTGTTTTTTAAAATCGACTCATATTGCGAGAGGTG
62 GAGGTAATTTCAATTTCT-GTTTTCAA---------AAAAAAATCAACTCATATTGCGAGAGGTG
77675170 AGTTGAGCCTCGG-ACACGCTGAGGTAATTTC
117 AGTTGAGCCTCGGTACACGCTGAGGTAATTTC
* * * *
77675201 AATTTCTGTTTGTCAAAAT-TACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGCTCAC-ATGCA
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGATG--
** * * * *
77675263 AGGTCTTTTCAATTTCTGTTTTCAATTTCTGTTCGTAAAAAATGAACTCATATTGCTAGACGTGA
63 AGGTAATTTCAATTTCTGTTTTCAA----------AAAAAAATCAACTCATATTGCGAGAGGTGA
77675328 GTTGAGCCTCAGG-ACACGCTGAGGTAATTTC
118 GTTGAGCCTC-GGTACACGCTGAGGTAATTTC
* ** *
77675359 AATTTTTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 AATTTCTGTT-TT---TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGAT
* * *
77675424 GAGGTATTTTAAATTTCTGTTTTTC----AAAAATCAACTCATATTGCGAGATGTGAGTTGAGCC
62 GAGGTAATTTCAATTTCTG-TTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
77675485 T
126 T
77675486 TGGGTTCACA
Statistics
Matches: 807, Mismatches: 137, Indels: 171
0.72 0.12 0.15
Matches are distributed among these distances:
125 31 0.04
126 58 0.07
127 2 0.00
129 1 0.00
134 3 0.00
135 1 0.00
136 2 0.00
137 7 0.01
138 7 0.01
139 3 0.00
141 1 0.00
142 2 0.00
147 13 0.02
148 128 0.16
149 45 0.06
150 26 0.03
151 10 0.01
152 36 0.04
153 3 0.00
154 5 0.01
155 64 0.08
156 24 0.03
157 56 0.07
158 59 0.07
159 33 0.04
160 88 0.11
161 37 0.05
162 21 0.03
163 37 0.05
164 4 0.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.35
Consensus pattern (148 bp):
AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
TAATTTCAATTTCTGTTTTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGT
ACACGCTGAGGTAATTTC
Found at i:77674839 original size:72 final size:73
Alignment explanation
Indices: 77674759--77674900 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
77674749 TCAAAATCAG
* * *
77674759 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
77674823 AATTTCAA
66 AATTTCAA
* *
77674831 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
77674896 AATTT
66 AATTT
77674901 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:77675013 original size:71 final size:72
Alignment explanation
Indices: 77674896--77675120 Score: 254
Period size: 73 Copynumber: 3.1 Consensus size: 72
77674886 TCGTTTTTTT
* * *
77674896 AATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACGCTGAG
1 AATTTATG-TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAG
77674960 GTAATTTC
65 GTAATTTC
* ** *
77674968 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAG
** *
77675033 GTGGTTTT
65 GTAATTTC
* * * **
77675041 AATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTG
1 AATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTG
*
77675106 AGGTATTTTC
63 AGGTAATTTC
77675116 AATTT
1 AATTT
77675121 CTGGTTTTCA
Statistics
Matches: 126, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 40 0.32
72 7 0.06
73 57 0.45
74 1 0.01
75 20 0.16
76 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (72 bp):
AATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
TAATTTC
Found at i:77675071 original size:73 final size:71
Alignment explanation
Indices: 77674892--77675091 Score: 256
Period size: 73 Copynumber: 2.8 Consensus size: 71
77674882 ATTTTCGTTT
* * *
77674892 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCT
77674957 GAGGTAA
65 GAGGTAA
* * ** *
77674964 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGC
**
77675029 TGAGGTGG
64 TGAGGTAA
* * *
77675037 TTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
77675092 TGGCTCACAC
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
71 40 0.37
72 10 0.09
73 58 0.54
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTG
AGGTAA
Found at i:77675142 original size:14 final size:14
Alignment explanation
Indices: 77675111--77675141 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
77675101 CGCTGAGGTA
77675111 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
77675125 TTTTCAATTTCT-G
1 TTTTCAATTTCTGG
77675138 TTTT
1 TTTT
77675142 TTAAAATCGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.65
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:77675157 original size:232 final size:231
Alignment explanation
Indices: 77674737--77675485 Score: 689
Period size: 232 Copynumber: 3.2 Consensus size: 231
77674727 TGAACCTTTT
* * * * * *
77674737 AATTTCTATTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
1 AATTTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
* ** * *
77674802 TATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
66 TATTTTCAATTTATGTGTTAAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
* *
77674867 GCTGAGGTATTTTCAATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGA
131 GCTGAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTT-AAAAAAAATCAACTCATATTGCGA
*
77674932 GAAGTGAGTTGAGCCTC-AAGACGCTGAGGTAATTTC
195 GAAGTGAGTTGAGCCTCGAACACGCTGAGGTAATTTC
*
77674968 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
* * *
77675033 GTGGTTTT-AATTTATGT-TCATAAAAAATT-AGCTCATATTGCAAGAGGTGAGTTGAGCCT-TG
65 GT-ATTTTCAATTTATGTGT--T-AAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAG
* *** *
77675094 GCTCACACGCTGAGGTATTTTCAA-TTTC-TGGTTTTCAATTTCTGTTT-TTTAAAATCGACTCA
126 G---ACACGCTGAGGTATTTTCAATTTTCGT-GTTTTCAATTTATGTTTAAAAAAAATCAACTCA
* *
77675156 TATTGCGAGAGGTGAGTTGAGCCTCGGACACGCTGAGGTAATTTC
187 TATTGCGAGAAGTGAGTTGAGCCTCGAACACGCTGAGGTAATTTC
* * * *
77675201 AATTTCTGTTTGTCAAAAT-TACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGCTCACATGC-A
1 AATTTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTG
* * * * * *
77675263 AGGTCTTTTCAATTTCTGTTTTCAATTTCTGTTCGTAAAAAATGAACTCATATTGCTAGACGTGA
63 AGGTATTTTCAA-------TTT--A--TGTG-T--TAAAAATTCAACTCATATTGCAAGAGGTGA
* *
77675328 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTT--TG---------T-TGTTAAAAAAAAA
114 GTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTAAAAAAAA
* * * *
77675381 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTA
179 TCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GAACACGCTGAGGTAATTTC
* *
77675435 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 AATTTCTGTTTGTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
77675486 TGGGTTCACA
Statistics
Matches: 434, Mismatches: 50, Indels: 63
0.79 0.09 0.12
Matches are distributed among these distances:
230 2 0.00
231 45 0.10
232 108 0.25
233 106 0.24
234 53 0.12
235 25 0.06
236 27 0.06
239 3 0.01
241 1 0.00
242 1 0.00
243 22 0.05
244 9 0.02
245 30 0.07
246 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (231 bp):
AATTTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG
TATTTTCAATTTATGTGTTAAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTAAAAAAAATCAACTCATATTGCGAG
AAGTGAGTTGAGCCTCGAACACGCTGAGGTAATTTC
Found at i:77675255 original size:158 final size:160
Alignment explanation
Indices: 77674964--77675450 Score: 596
Period size: 158 Copynumber: 3.0 Consensus size: 160
77674954 GCTGAGGTAA
* * *
77674964 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTT-TAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * ** * *
77675029 TGAGGTGGTTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
65 TGAGGTAATTTCAATTTATGTTTGTAAAAAATTA-CTCATATTGCGAGAGGTGAGTTGAGCCTCG
77675094 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
129 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
**
77675126 TTTCAATTTCTGTTTTTTAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACGCT
1 TTTCAATTTCTGTTTTAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
* * *
77675190 GAGGTAATTTCAATTTCTGTTTGT-CAAAATTACTCATATTGTGAGAGGTGAGTTGAGCCTCGGC
66 GAGGTAATTTCAATTTATGTTTGTAAAAAATTACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
* * *
77675254 TCACATGC-AAGGTCTTTTCAATTTCT-GT
131 TCACACGCTGAGGTATTTTCAATTTCTGGT
* * *
77675282 TTTCAATTTCTGTTCGTAAAAAAT-GAACTCATATTGCTAGACGTGAGTTGAGCCTCAGGACACG
1 TTTCAATTTCTGTT-TTAAAAAATCG-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* *
77675346 CTGAGGTAATTTCAATTTTTG-TTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
64 CTGAGGTAATTTCAATTTATGTTTG-T---AAAAAAT-TACTCATATTGCGAGAGGTGAGTTGAG
* *
77675410 CCTCAGG---ACACGCTGAGGTATTTTAAATTTCTGTT
124 CCTC-GGCTCACACGCTGAGGTATTTTCAATTTCTGGT
77675445 TTTCAA
1 TTTCAA
77675451 AAATCAACTC
Statistics
Matches: 282, Mismatches: 31, Indels: 23
0.84 0.09 0.07
Matches are distributed among these distances:
156 17 0.06
157 53 0.19
158 64 0.23
159 7 0.02
160 27 0.10
161 42 0.15
162 34 0.12
163 36 0.13
164 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.36
Consensus pattern (160 bp):
TTTCAATTTCTGTTTTAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
GAGGTAATTTCAATTTATGTTTGTAAAAAATTACTCATATTGCGAGAGGTGAGTTGAGCCTCGGC
TCACACGCTGAGGTATTTTCAATTTCTGGT
Found at i:77675286 original size:13 final size:13
Alignment explanation
Indices: 77675268--77675295 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
77675258 ATGCAAGGTC
77675268 TTTTCAATTTCTG
1 TTTTCAATTTCTG
77675281 TTTTCAATTTCTG
1 TTTTCAATTTCTG
77675294 TT
1 TT
77675296 CGTAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (13 bp):
TTTTCAATTTCTG
Found at i:77675405 original size:76 final size:73
Alignment explanation
Indices: 77675286--77675485 Score: 267
Period size: 76 Copynumber: 2.7 Consensus size: 73
77675276 TTCTGTTTTC
* * *
77675286 AATTTCTGTTCGT-AAAAAATGAACTCATATTGCTAGACGTGAGTTGAGCCTCAGGACACGCTGA
1 AATTTCTGTT-TTAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGACACGCTGA
*
77675350 GGTAATTTC
65 GGTAATTTA
* *
77675359 AATTTTTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 AATTTCTGTT-TT--AAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGACACGCT
*
77675424 GAGGTATTTTA
63 GAGGTAATTTA
** *
77675435 AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 AATTTCTGTTTTAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCT
77675486 TGGGTTCACA
Statistics
Matches: 112, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
73 46 0.41
75 2 0.02
76 64 0.57
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (73 bp):
AATTTCTGTTTTAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGACACGCTGAG
GTAATTTA
Found at i:77675464 original size:394 final size:391
Alignment explanation
Indices: 77674733--77675488 Score: 1021
Period size: 394 Copynumber: 1.9 Consensus size: 391
77674723 GGGTTGAACC
*
77674733 TTTTAATTTCTATTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCT
1 TTTTAATTTCTATTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCT
* * * *
77674798 GAGGTATTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
66 GAGGTAATTTCAATTTCTGTGTTTAAAATT-AACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG
* * *
77674863 ACACGCTGAGGTATTTTCAATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATT
130 ACACGCTAAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATT
* *
77674928 GCGAGAAGTGAGTTGAGCCTCAAGACGCTGAGGTAATTTCAATTTTTGTTTGTCAAAAATCAACT
195 GCGAGAAGTGAGTTGAGCCTCAACACGCTGAGGTAATTTCAATTTTTGTTTGTAAAAAATCAACT
*
77674993 CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTTAATTTATGTTCATAAAA
260 CATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGATTTTAATTTATGTTCATAAAA
* *
77675058 AATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCT
325 AATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCT
77675123 GG
390 GG
* * *
77675125 TTTTCAATTTCTGTTTTTTAAAATC-GACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGACACG
1 TTTT-AATTTCTATTTTTCAAAATCAG-CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACG
*
77675188 CTGAGGTAATTTCAATTTCTGT-TTGTCAAAATT-ACTCATATTGTGAGAGGTGAGTTGAGCCTC
64 CTGAGGTAATTTCAATTTCTGTGTT-T-AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTC
* * * ** *
77675251 -GGCTCACATGC-AAGGTCTTTTCAA-TTTC-TGTTTTCAATTTCTG-TTCGTAAAAAATGAACT
127 AGG---ACACGCTAAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACT
* *
77675311 CATATTGCTAGACGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTTTG-TTGTTAAA
189 CATATTGCGAGAAGTGAGTTGAGCCTCA--ACACGCTGAGGTAATTTCAATTTTTGTTTG-T---
77675375 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTAAATT
248 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGATTTT-AATT
* ** * * *
77675439 TCTGTTTTTCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCTTGG
312 TATGTTCATAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGG
77675489 GTTCACATGT
Statistics
Matches: 319, Mismatches: 31, Indels: 26
0.85 0.08 0.07
Matches are distributed among these distances:
389 40 0.13
390 17 0.05
391 61 0.19
392 43 0.13
393 59 0.18
394 99 0.31
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (391 bp):
TTTTAATTTCTATTTTTCAAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCT
GAGGTAATTTCAATTTCTGTGTTTAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
CACGCTAAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTG
CGAGAAGTGAGTTGAGCCTCAACACGCTGAGGTAATTTCAATTTTTGTTTGTAAAAAATCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGATTTTAATTTATGTTCATAAAAA
ATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTGAGGTATTTTCAATTTCTG
G
Found at i:77688865 original size:70 final size:70
Alignment explanation
Indices: 77688741--77688915 Score: 194
Period size: 70 Copynumber: 2.5 Consensus size: 70
77688731 CTTTCCAAGG
**
77688741 AAAATCAACTCATATTGCGAG-AGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTT-
1 AAAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
*
77688804 TTTTTT
65 TGTTTT
** * * *
77688810 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCCACGCCGATGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
77688875 TGTTTT
65 TGTTTT
** * * *
77688881 -AAATTGACTCATATTGTGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
77688916 TTTAATTTTT
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
69 30 0.33
70 53 0.59
71 7 0.08
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.35
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:77689060 original size:77 final size:76
Alignment explanation
Indices: 77688933--77689342 Score: 514
Period size: 77 Copynumber: 5.4 Consensus size: 76
77688923 TTTGTTTTTC
* * *
77688933 AAAATCAACTCATATTGCTAGAGGTGGGTTGAGCCTCAGGACATGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
77688998 GTTGTTAAAAAA
66 GTT-TTAAAAAA
**
77689010 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
77689075 GTTTT----CA
66 GTTTTAAAAAA
* * ** * * *
77689082 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
77689147 GTTTTCAAAAAA
66 GTTTT-AAAAAA
* * *
77689159 AAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
77689223 TCTGTTTTTAAAAAA
63 TCTG-TTTTAAAAAA
*
77689238 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
77689303 GTTTGT----CA
66 GTTT-TAAAAAA
* *
77689311 AGAATCAACTCATATTGCGAGAGGTGGGTTGA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGA
77689343 ACCTTTTAAT
Statistics
Matches: 297, Mismatches: 25, Indels: 26
0.85 0.07 0.07
Matches are distributed among these distances:
72 66 0.22
73 31 0.10
76 6 0.02
77 122 0.41
79 66 0.22
80 6 0.02
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTTTAAAAAA
Found at i:77689189 original size:149 final size:149
Alignment explanation
Indices: 77688919--77690108 Score: 603
Period size: 149 Copynumber: 7.9 Consensus size: 149
77688909 TAAGCCTTTT
* * * * *
77688919 AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGGGTTGAGCCTCAGGACATGCTGAGG
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
**
77688984 TAATTTCAATTTCTGTTGTT-AAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
66 TAATTTCAATTTCTGTT-TTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
77689048 GG-ACACGCTGAGGTAATTTC
129 GGTACACGCTGAGGTAATTTC
* ** * *
77689068 AATTTCTG-TTTTCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTCTGTTTTTCAAAA-TCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAG
* *
77689132 GTATTTTCAATTTCTGTTTTCAAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCG
65 GTAATTTCAATTTCTGTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
* *
77689197 GTTCACATGCTGAGGTATTTTC
130 G-T-ACACGCTGAGGTAATTTC
*
77689219 AATTTCTGTTTTTAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
1 AATTTCTGTTTTT-----CAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGA
* * *
77689284 TGAGGTAATTTCAATTTCTGTTTGTC-----AAGAATCAACTCATATTGCGAGAGGTGGGTTGAA
61 TGAGGTAATTTCAATTTCTGTTT-TCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
77689344 CCT---T------T----TAATTTC
125 CCTCGGTACACGCTGAGGTAATTTC
* *** * * * * *
77689356 TA-TT-T-TTTCAAA--ATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGG
1 AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
* * * **
77689416 TATTTTCAATTTTTGTGTTT------TAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA
66 TAATTTCAATTTCTGT-TTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-
*
77689475 GG-ACACGCTGAGGTATTTTC
129 GGTACACGCTGAGGTAATTTC
* * *** * ** * * * * *
77689495 AATTT-TCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAG-TGAG-TTG
1 AATTTCT-G-TTTTTCAA---A---ATCAACTCATAT-TGC-GAGA--G-GTG-AGTTGAGCCTC
* * * *
77689557 AGCCTCAAGACGCTGAGGTAATTTCAATTTTTGTTTGTC-----AAAAATCAACTCATATTGCGA
52 AG----GACACGATGAGGTAATTTCAATTTCTGTTT-TCAAAAAAAAAATCAACTCATATTGCGA
** *
77689617 GAGGTGAGTTGAGCCTCAGG-ACACGCTGAGGTGGTTTT
112 GAGGTGAGTTGAGCCTC-GGTACACGCTGAGGTAATTTC
* * ** * * * * *
77689655 AATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCT
1 AATTTCTGTT-TTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGAT
* *** *
77689719 GAGGTATTTTCAATTTCTGGTTTTCAATTTCTGTTTTTTAAAAATCGACTCATATTGCGAGAGGT
62 GAGGTAATTTCAATTTCT-GTTTTCAA---------AAAAAAAATCAACTCATATTGCGAGAGGT
*
77689784 GAGTTGAGCCTCGGGACACGCTGAGGTAATTTC
117 GAGTTGAGCCTCGGTACACGCTGAGGTAATTTC
* * * *
77689817 AATTTCTGTTTGTCAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGCTCAC-ATGC
1 AATTTCTGTTTTTC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACACGAT--
** * *
77689880 AGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATGAACTCATATTGCTAG
62 -GAGGTAATTTCAATTTCTGTT-TTC-A-----------AAAAAAAAATCAACTCATATTGCGAG
*
77689945 ACGTGAGTTGAGCCTCAGG-ACACGCTGAGGTAATTTC
113 AGGTGAGTTGAGCCTC-GGTACACGCTGAGGTAATTTC
** *
77689982 AATTT-TGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
1 AATTTCTGTT-TT---TCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGAT
* * *
77690046 GAGGTATTTTTAAATTTCTGTTTTTC-----AAAAATCAACTCATATTGCGAGATGTGAGTTGAG
62 GAGGTA-ATTTCAATTTCTG-TTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
77690106 CCT
125 CCT
77690109 TGGGTTCACA
Statistics
Matches: 813, Mismatches: 127, Indels: 202
0.71 0.11 0.18
Matches are distributed among these distances:
126 31 0.04
127 58 0.07
128 2 0.00
129 2 0.00
134 3 0.00
135 2 0.00
136 2 0.00
137 7 0.01
139 7 0.01
140 3 0.00
141 1 0.00
143 4 0.00
148 40 0.05
149 147 0.18
150 2 0.00
151 30 0.04
152 40 0.05
153 3 0.00
154 5 0.01
155 3 0.00
156 65 0.08
157 9 0.01
158 2 0.00
159 28 0.03
160 66 0.08
161 6 0.01
162 116 0.14
163 1 0.00
164 4 0.00
165 63 0.08
166 17 0.02
167 40 0.05
168 3 0.00
174 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (149 bp):
AATTTCTGTTTTTCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGATGAGG
TAATTTCAATTTCTGTTTTCAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
TACACGCTGAGGTAATTTC
Found at i:77689454 original size:72 final size:73
Alignment explanation
Indices: 77689373--77689514 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
77689363 TCAAAATCAG
* * *
77689373 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
77689437 AATTTCAA
66 AATTTCAA
* *
77689445 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
77689510 AATTT
66 AATTT
77689515 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:77689627 original size:71 final size:72
Alignment explanation
Indices: 77689510--77689734 Score: 254
Period size: 73 Copynumber: 3.1 Consensus size: 72
77689500 TCGTTTTTTT
* * *
77689510 AATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA-AGACGCTGAG
1 AATTTATG-TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAG
77689574 GTAATTTC
65 GTAATTTC
* ** *
77689582 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA-GACACGCTGAG
** *
77689647 GTGGTTTT
65 GTAATTTC
* * * **
77689655 AATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTGGCTCACACGCTG
1 AATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-T--CAGACACGCTG
*
77689720 AGGTATTTTC
63 AGGTAATTTC
77689730 AATTT
1 AATTT
77689735 CTGGTTTTCA
Statistics
Matches: 126, Mismatches: 22, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 40 0.32
72 7 0.06
73 57 0.45
74 1 0.01
75 20 0.16
76 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (72 bp):
AATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGACACGCTGAGG
TAATTTC
Found at i:77689685 original size:73 final size:71
Alignment explanation
Indices: 77689506--77689705 Score: 256
Period size: 73 Copynumber: 2.8 Consensus size: 71
77689496 ATTTTCGTTT
* * *
77689506 TTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACGCT
1 TTTTAATTTATG-TTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCT
77689571 GAGGTAA
65 GAGGTAA
* * ** *
77689578 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--ACACGC
**
77689643 TGAGGTGG
64 TGAGGTAA
* * *
77689651 TTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCT
1 TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
77689706 TGGCTCACAC
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
71 40 0.37
72 10 0.09
73 58 0.54
ACGTcount: A:0.32, C:0.14, G:0.21, T:0.33
Consensus pattern (71 bp):
TTTTAATTTATGTTCATAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAACACGCTG
AGGTAA
Found at i:77689756 original size:14 final size:14
Alignment explanation
Indices: 77689725--77689755 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
77689715 CGCTGAGGTA
77689725 TTTTCAATTTCTGG
1 TTTTCAATTTCTGG
77689739 TTTTCAATTTCT-G
1 TTTTCAATTTCTGG
77689752 TTTT
1 TTTT
77689756 TTAAAAATCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.13, C:0.13, G:0.10, T:0.65
Consensus pattern (14 bp):
TTTTCAATTTCTGG
Found at i:77689803 original size:162 final size:162
Alignment explanation
Indices: 77689578--77690073 Score: 597
Period size: 162 Copynumber: 3.0 Consensus size: 162
77689568 GCTGAGGTAA
* * * *
77689578 TTTCAATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
1 TTTCAATTTCTGTTTATAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
** * * * * *
77689643 TGAGGTGGTTTTAATTTATGTTCATAAAAAATTAGCTCATATTGCAAGAGGTGAGTTGAGCCTTG
66 TGAGGTAATTTCAATTTATGTTAATAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
77689708 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
* * *
77689740 TTTCAATTTCTGTTTTTTAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
1 TTTCAATTTCTGTTTATAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
* ** * * *
77689805 TGAGGTAATTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTCG
66 TGAGGTAATTTCAATTTATGTTAATAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
* * *
77689870 GCTCACATGCAGAGGTCTTTTCAATTTCT-GT
131 GCTCACACGCTGAGGTATTTTCAATTTCTGGT
* * *
77689901 TCTTCAATTTCTGTTCGTAAAAAAAAAT-GAACTCATATTGCTAGACGTGAGTTGAGCCTCAGGA
1 T-TTCAATTTCTGTT--T-ATAAAAAATCG-ACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
* * *
77689965 CACGCTGAGGTAATTTCAATTTTGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTG
61 CACGCTGAGGTAATTTCAA-TTT-ATGTTAATAAAAAATTAACTCATATTGCGAGAGGTGAGTTG
* *
77690030 AGCCTCAGG---ACACGCTGAGGTATTTTTAAATTTCTGTT
124 AGCCT-AGGCTCACACGCTGAGGTA-TTTTCAATTTCTGGT
77690068 TTTCAA
1 TTTCAA
77690074 AAATCAACTC
Statistics
Matches: 286, Mismatches: 38, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
161 3 0.01
162 153 0.53
164 2 0.01
165 66 0.23
166 19 0.07
167 41 0.14
168 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.35
Consensus pattern (162 bp):
TTTCAATTTCTGTTTATAAAAAATCGACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTAATTTCAATTTATGTTAATAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTAG
GCTCACACGCTGAGGTATTTTCAATTTCTGGT
Found at i:77689844 original size:235 final size:232
Alignment explanation
Indices: 77689365--77690108 Score: 668
Period size: 235 Copynumber: 3.2 Consensus size: 232
77689355 CTATTTTTTC
* * * * *
77689365 AAAATCAGCTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTAT
** * *
77689430 GTGTTTTAATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
66 GTGTTAAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
* *
77689495 AATTTTCGTTTTTTTAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
131 AATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
* *
77689560 CTCAAGACGCTGAGGTAATTTCAATTTTTGTTTGTCA
196 CTCAACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
*
77689597 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTGGTTTT-AATTTA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT-ATTTTCAATTTA
* *
77689661 TGT-TCATAAAAAATT-AGCTCATATTGCAAGAGGTGAGTTGAGCCT-TGGCTCACACGCTGAGG
65 TGTGT--T-AAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGG
* *** * *
77689723 TATTTTCAA-TTTC-TGGTTTTCAATTTCTGTTT-TTTAAAAATCGACTCATATTGCGAGAGGTG
124 TATTTTCAATTTTCGT-GTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTG
*
77689785 AGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
188 AGTTGAGCCTC--AACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
* * * *
77689832 AAAATTAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGCTCACATGCAGAGGTCTTTTCAATT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGG-----T--A--
* * * * * *
77689896 TCTGTTCTTCAATTTCTGTTCGTAAAAAAAAATGAACTCATATTGCTAGACGTGAGTTGAGCCTC
54 ----TT-TTCAATTTATG-T-GT--TAAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
* *
77689961 AGGACACGCTGAGGTAATTTCAA-TTT--TG---------T-TG-TTAAAAAAAAATCAACTCAT
110 AGGACACGCTGAGGTATTTTCAATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCAT
* * * *
77690012 ATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTTCTGTTTTTCA
175 ATTGCGAGAAGTGAGTTGAGCCTCA--ACACGCTGAGGTA-ATTTCAATTTCTGTTTGTCA
*
77690073 AAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
77690109 TGGGTTCACA
Statistics
Matches: 427, Mismatches: 49, Indels: 63
0.79 0.09 0.12
Matches are distributed among these distances:
231 1 0.00
232 58 0.14
233 70 0.16
234 24 0.06
235 86 0.20
237 9 0.02
239 2 0.00
240 52 0.12
241 51 0.12
242 1 0.00
249 2 0.00
250 3 0.01
251 8 0.02
252 23 0.05
253 6 0.01
254 29 0.07
255 2 0.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (232 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTAT
GTGTTAAAAATTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTC
AATTTTCGTGTTTTCAATTTATGTTTCAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
CTCAACACGCTGAGGTAATTTCAATTTCTGTTTGTCA
Found at i:77689908 original size:14 final size:14
Alignment explanation
Indices: 77689889--77689916 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
77689879 CAGAGGTCTT
77689889 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
77689903 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
77689917 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:77690027 original size:75 final size:77
Alignment explanation
Indices: 77689903--77690108 Score: 289
Period size: 75 Copynumber: 2.7 Consensus size: 77
77689893 ATTTCTGTTC
* *
77689903 TTCAATTTCTGTTCG-TAAAAAAAAATGAACTCATATTGCTAGACGTGAGTTGAGCCTCAGGACA
1 TTCAATTTCTGTT-GTTAAAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGACA
77689967 CGCTGAGGTA-AT
65 CGCTGAGGTATAT
*
77689979 TTCAATTT-TGTTGTTAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGACAC
*
77690043 GCTGAGGTATTT
66 GCTGAGGTATAT
* ** *
77690055 TTAAATTTCTGTT-TT--TCAAAAATCAACTCATATTGCGAGATGTGAGTTGAGCCT
1 TTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCT
77690109 TGGGTTCACA
Statistics
Matches: 119, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
74 37 0.31
75 60 0.50
76 18 0.15
77 4 0.03
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (77 bp):
TTCAATTTCTGTTGTTAAAAAAAAATCAACTCATATTGCGAGACGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATAT
Found at i:77690858 original size:30 final size:30
Alignment explanation
Indices: 77690822--77690936 Score: 185
Period size: 30 Copynumber: 3.8 Consensus size: 30
77690812 ACTTTTCTCA
*
77690822 ACTAGCCACTCCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
77690852 ACTAGCCACACCTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
***
77690882 ACTAGCCACTTTTTTTCCACCACCAACTCC
1 ACTAGCCACACCTTTTCCACCACCAACTCC
*
77690912 ACTAGCCACACCTTCTCCACCACCA
1 ACTAGCCACACCTTTTCCACCACCA
77690937 CTTGTACCTA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 77 1.00
ACGTcount: A:0.25, C:0.49, G:0.03, T:0.23
Consensus pattern (30 bp):
ACTAGCCACACCTTTTCCACCACCAACTCC
Found at i:77691493 original size:24 final size:22
Alignment explanation
Indices: 77691438--77691496 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 22
77691428 TTTTTTTTGT
*
77691438 TATTATTATATTTCTTATTATTA
1 TATTA-TATATTTCTTATTAATA
77691461 TATTATATATATTCTT-TTAATA
1 TATTATATAT-TTCTTATTAATA
77691483 TATTAGGTATATTT
1 TATTA--TATATTT
77691497 TAAATTTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 15 0.47
23 12 0.38
24 5 0.16
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (22 bp):
TATTATATATTTCTTATTAATA
Found at i:77691543 original size:25 final size:25
Alignment explanation
Indices: 77691515--77691656 Score: 83
Period size: 25 Copynumber: 5.6 Consensus size: 25
77691505 ATATTACGTA
* *
77691515 TATATATATTTTATACTATTTTATG
1 TATATATATTTAATACTATATTATG
* * *
77691540 TATATATCTTTAATATTATATTATTTA
1 TATATATATTTAATACTATATTA--TG
** *
77691567 TATATATATTTTTACATGTTATCTTATG
1 TATATATA--TTTA-ATACTATATTATG
*
77691595 TATATAT-CTT-A-ACTATATTATG
1 TATATATATTTAATACTATATTATG
* * * *
77691617 TATGTATTTTTAACACTATATTAGG
1 TATATATATTTAATACTATATTATG
* *
77691642 TACATATTTTTAATA
1 TATATATATTTAATA
77691657 TTATCACGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
22 14 0.16
23 3 0.03
24 1 0.01
25 43 0.48
27 8 0.09
28 8 0.09
29 4 0.04
30 9 0.10
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATG
Found at i:77691565 original size:30 final size:28
Alignment explanation
Indices: 77691503--77691604 Score: 77
Period size: 27 Copynumber: 3.7 Consensus size: 28
77691493 ATTTTAAATT
* * * *
77691503 TTATATTACGTATATATATATT-TTATA
1 TTATTTTATGTATATATCTTTTATTATA
*
77691530 CTATTTTATGTATATATCTTTAATATTATA
1 TTATTTTATGTATATATCTTT--TATTATA
* * *
77691560 TTA-TTTATATATATAT-TTTTA-CATG
1 TTATTTTATGTATATATCTTTTATTATA
*
77691585 TTATCTTATGTATATATCTT
1 TTATTTTATGTATATATCTT
77691605 AACTATATTA
Statistics
Matches: 59, Mismatches: 11, Indels: 10
0.74 0.14 0.12
Matches are distributed among these distances:
25 5 0.08
26 13 0.22
27 18 0.31
28 3 0.05
29 13 0.22
30 7 0.12
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (28 bp):
TTATTTTATGTATATATCTTTTATTATA
Found at i:77691829 original size:16 final size:14
Alignment explanation
Indices: 77691810--77691843 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
77691800 TATTATTCTA
77691810 ATATTTTGATATTTT
1 ATATTTT-ATATTTT
77691825 GATATTTTATATTTT
1 -ATATTTTATATTTT
77691840 ATAT
1 ATAT
77691844 ATTTTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.22
15 7 0.39
16 7 0.39
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (14 bp):
ATATTTTATATTTT
Found at i:77691838 original size:7 final size:8
Alignment explanation
Indices: 77691810--77691843 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
77691800 TATTATTCTA
77691810 ATATTTTG
1 ATATTTTG
77691818 ATATTTTG
1 ATATTTTG
77691826 ATATTTT-
1 ATATTTTG
77691833 ATATTTT-
1 ATATTTTG
77691840 ATAT
1 ATAT
77691844 ATTTTATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (8 bp):
ATATTTTG
Found at i:77691845 original size:16 final size:15
Alignment explanation
Indices: 77691810--77691850 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
77691800 TATTATTCTA
77691810 ATATTTTGATATTTTG
1 ATATTTT-ATATTTTG
*
77691826 ATATTTTATATTTTAT
1 ATATTTTATATTTT-G
77691842 ATATTTTAT
1 ATATTTTAT
77691851 TATTCACATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (15 bp):
ATATTTTATATTTTG
Found at i:77705026 original size:162 final size:160
Alignment explanation
Indices: 77704727--77705048 Score: 421
Period size: 162 Copynumber: 2.0 Consensus size: 160
77704717 CAACCGCGGC
* * *
77704727 ACTCTAGCAGAACTAGGAAAACGAGCCCGTACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
1 ACTCCAGCAGAACTAGGAAAACGAACCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
** * *
77704792 CAATGGTGACCGAGTATGCGACTGCCTTGTTGACCCTCTCTGCATAAGCAAAGAATAATGTTACA
66 CAATGAAGACCGAGTACGCGACTGCCGTGTTGACCCTCTCTGCATAAGCAAAGAATAA--TTACA
* *
77704857 GGAGGAACTTACACAAATTCTAAAGGAAAGGG
129 GGAGGAACTTACACAAATTCAAAAGAAAAGGG
* *
77704889 ACTCCAGCAGAAGTAGGAGAACGAACCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
1 ACTCCAGCAGAACTAGGAAAACGAACCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
* * * * **
77704954 CACTGAAGACTGAGTACGGGATTGCCGTGTTGGGCCTCTCTGCATTAGAAGCAAAGAATAA-TAC
66 CAATGAAGACCGAGTACGCGACTGCCGTGTTGACCCTCTCTGCA-T--AAGCAAAGAATAATTAC
* *
77705018 ATGAGGAACTTATACAAATTCAAAAGAAAAG
128 AGGAGGAACTTACACAAATTCAAAAGAAAAG
77705049 CATCAAGTTC
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
162 124 0.90
163 1 0.01
165 13 0.09
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (160 bp):
ACTCCAGCAGAACTAGGAAAACGAACCCATACTCCTCTCCTATTTGAAGAATTCTGAGAAGTCCG
CAATGAAGACCGAGTACGCGACTGCCGTGTTGACCCTCTCTGCATAAGCAAAGAATAATTACAGG
AGGAACTTACACAAATTCAAAAGAAAAGGG
Found at i:77718498 original size:25 final size:25
Alignment explanation
Indices: 77718464--77718515 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
77718454 TGTTGTGTGA
77718464 AAGACATGTTAATTAGTTTAATATT
1 AAGACATGTTAATTAGTTTAATATT
77718489 AAGACATGTTAATTAGTTTAATATT
1 AAGACATGTTAATTAGTTTAATATT
77718514 AA
1 AA
77718516 TTTTCTTTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.42, C:0.04, G:0.12, T:0.42
Consensus pattern (25 bp):
AAGACATGTTAATTAGTTTAATATT
Found at i:77727770 original size:99 final size:100
Alignment explanation
Indices: 77727648--77727832 Score: 277
Period size: 99 Copynumber: 1.9 Consensus size: 100
77727638 TACTTATGAA
* *
77727648 TTATGAATAGTTATTTACCTTTTTTAAGAT-ATATTTTATGATTAATTATTTACTTTT-TTGATA
1 TTATGAATAATTATTTACCTTTTTTAAG-TCATATTTTATGATTAATTAATTACTTTTATTGATA
*
77727711 CTCTTTAATT-TCGATCAAAATATTTTTTATTTTATT
65 CTCCTTAATTAT-GATCAAAATATTTTTTATTTTATT
* * *
77727747 TTATGACTAATTATTTACCTTTTTTGAGTCATATTTTATGATTAATTAATTATTTTTATTGATAC
1 TTATGAATAATTATTTACCTTTTTTAAGTCATATTTTATGATTAATTAATTACTTTTATTGATAC
77727812 TCCTTAATTATGATCAAAATA
66 TCCTTAATTATGATCAAAATA
77727833 AAAAAAATTT
Statistics
Matches: 77, Mismatches: 6, Indels: 5
0.88 0.07 0.06
Matches are distributed among these distances:
98 1 0.01
99 50 0.65
100 25 0.32
101 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.06, T:0.55
Consensus pattern (100 bp):
TTATGAATAATTATTTACCTTTTTTAAGTCATATTTTATGATTAATTAATTACTTTTATTGATAC
TCCTTAATTATGATCAAAATATTTTTTATTTTATT
Done.