Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 252 of 259
Found at i:79023056 original size:6 final size:6
Alignment explanation
Indices: 79023045--79023081 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
79023035 CTTCTTAGAA
79023045 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT G
1 GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT GAAGAT G
79023082 GTGAATTACG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.49, C:0.00, G:0.35, T:0.16
Consensus pattern (6 bp):
GAAGAT
Found at i:79025004 original size:30 final size:32
Alignment explanation
Indices: 79024950--79025010 Score: 90
Period size: 30 Copynumber: 2.0 Consensus size: 32
79024940 TAAAATATAT
*
79024950 TAATATTTATATATTTGTAATTAAATTTAAAA
1 TAATATTTATATATTTGAAATTAAATTTAAAA
*
79024982 TAATTTTTAT-TATTT-AAATTAAATTTAAA
1 TAATATTTATATATTTGAAATTAAATTTAAA
79025011 CTAAACGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 13 0.48
31 5 0.19
32 9 0.33
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (32 bp):
TAATATTTATATATTTGAAATTAAATTTAAAA
Found at i:79025218 original size:3 final size:3
Alignment explanation
Indices: 79025210--79025242 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
79025200 ATAAAATGTC
*
79025210 ATG ATG ATG ATG ATG ATG ATA ATG ATG AT- ATG A
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG A
79025243 GACATTTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:79026134 original size:17 final size:18
Alignment explanation
Indices: 79026114--79026159 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
79026104 CAAATGCACA
79026114 TTTTTATAAAAT-TTAAT
1 TTTTTATAAAATATTAAT
**
79026131 TTTTTATTTAATATTAAT
1 TTTTTATAAAATATTAAT
79026149 TTATTT-TAAAA
1 TT-TTTATAAAA
79026160 GAAAATCAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
17 10 0.43
18 10 0.43
19 3 0.13
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTTATAAAATATTAAT
Found at i:79030450 original size:7 final size:7
Alignment explanation
Indices: 79030440--79030467 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
79030430 TAATACATAG
79030440 TACAAAC
1 TACAAAC
79030447 TACAAAC
1 TACAAAC
79030454 TACAAAC
1 TACAAAC
79030461 TACAAAC
1 TACAAAC
79030468 GGTAAATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.29, G:0.00, T:0.14
Consensus pattern (7 bp):
TACAAAC
Found at i:79031645 original size:18 final size:19
Alignment explanation
Indices: 79031603--79031641 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
79031593 TCAAAATTTT
79031603 AAATAATAATTATTGTTGA
1 AAATAATAATTATTGTTGA
79031622 AAATAATAA-TATT-TTGA
1 AAATAATAATTATTGTTGA
79031639 AAA
1 AAA
79031642 ATAAAATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.35
18 4 0.20
19 9 0.45
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (19 bp):
AAATAATAATTATTGTTGA
Found at i:79033265 original size:8 final size:8
Alignment explanation
Indices: 79033252--79033278 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
79033242 GATTGGATCT
79033252 TTTATTGC
1 TTTATTGC
79033260 TTTATTGC
1 TTTATTGC
79033268 TTTATTGC
1 TTTATTGC
79033276 TTT
1 TTT
79033279 TCTGTTCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (8 bp):
TTTATTGC
Found at i:79041443 original size:3 final size:3
Alignment explanation
Indices: 79041437--79041464 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
79041427 TAGAAGAACA
79041437 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
79041465 TAACATTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:79043233 original size:9 final size:9
Alignment explanation
Indices: 79043215--79043248 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
79043205 ACAAAATATG
79043215 ATCTATATGT
1 ATCTA-ATGT
79043225 ATCTAATGT
1 ATCTAATGT
79043234 ATCTAATGT
1 ATCTAATGT
79043243 AT-TAAT
1 ATCTAAT
79043249 TCCAAATATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 4 0.17
9 15 0.62
10 5 0.21
ACGTcount: A:0.35, C:0.09, G:0.09, T:0.47
Consensus pattern (9 bp):
ATCTAATGT
Found at i:79048318 original size:29 final size:27
Alignment explanation
Indices: 79048266--79048325 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
79048256 AAGTTAAAAT
79048266 TTTTTAAGAGGTAAAAATTAAATTATAAA
1 TTTTTAAGAGGTAAAAATTAAATT-T-AA
* *
79048295 TTTTTATA-AGGTAAAAGTTTAATTTAA
1 TTTTTA-AGAGGTAAAAATTAAATTTAA
79048322 TTTT
1 TTTT
79048326 ATATTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 6 0.21
28 1 0.04
29 20 0.71
30 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.10, T:0.47
Consensus pattern (27 bp):
TTTTTAAGAGGTAAAAATTAAATTTAA
Found at i:79052942 original size:20 final size:20
Alignment explanation
Indices: 79052919--79052960 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
79052909 TTCTTTTGAA
79052919 AAATGATTAT-TTTATAAAAT
1 AAATGATTATGTTTA-AAAAT
* *
79052939 AAATTATTTTGTTTAAAAAT
1 AAATGATTATGTTTAAAAAT
79052959 AA
1 AA
79052961 TTGAATATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (20 bp):
AAATGATTATGTTTAAAAAT
Found at i:79058586 original size:33 final size:33
Alignment explanation
Indices: 79058535--79058614 Score: 133
Period size: 33 Copynumber: 2.4 Consensus size: 33
79058525 TCCCATTGTG
*
79058535 CCGGAACCGACACCATCTGCCGAGGTGCCTGATT
1 CCGGCACC-ACACCATCTGCCGAGGTGCCTGATT
79058569 CCGGCACCACACCATCTGCCGAGGTGCCTGATT
1 CCGGCACCACACCATCTGCCGAGGTGCCTGATT
*
79058602 CCGGCACTACACC
1 CCGGCACCACACC
79058615 GGCTCTAACT
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
33 37 0.84
34 7 0.16
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (33 bp):
CCGGCACCACACCATCTGCCGAGGTGCCTGATT
Found at i:79059202 original size:62 final size:63
Alignment explanation
Indices: 79059102--79059227 Score: 166
Period size: 62 Copynumber: 2.0 Consensus size: 63
79059092 GTTTTTTTTA
* * * * *
79059102 TGATAGTATCTGAAAATATTGTAGGGTTAAGTTAGTTG-ATTTTTTTAGAATTAGGATTAAAT
1 TGATAGAATCTGAAAATATTGTAGGGTTAAATTAGTTGAACTTTTTTAGAATTAAGACTAAAT
* *
79059164 TGATAGAATCTGTAAATATTGTTA-GGTTAAATTTGTTGAACTTTTTTAGAATTAAGACTAAAT
1 TGATAGAATCTGAAAATATTG-TAGGGTTAAATTAGTTGAACTTTTTTAGAATTAAGACTAAAT
79059227 T
1 T
79059228 TATAAAATTT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
62 31 0.56
63 24 0.44
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (63 bp):
TGATAGAATCTGAAAATATTGTAGGGTTAAATTAGTTGAACTTTTTTAGAATTAAGACTAAAT
Found at i:79059258 original size:63 final size:63
Alignment explanation
Indices: 79059142--79059263 Score: 147
Period size: 63 Copynumber: 1.9 Consensus size: 63
79059132 GTTAGTTGAT
* * * * **
79059142 TTTTTTAGAATTAGGATTAAATTGATAGAATCTGTAAATATTGTTAGGTTAAATTTGTTGAAC
1 TTTTTTAGAATTAAGACTAAATTGATAAAATCTATAAATATTGTTAGACTAAATTTGTTGAAC
* * *
79059205 TTTTTTAGAATTAAGACTAAATTTATAAAATTTATAATTATTG-TAGAACTAAATTTGTT
1 TTTTTTAGAATTAAGACTAAATTGATAAAATCTATAAATATTGTTAG-ACTAAATTTGTT
79059264 ATTATGTAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
62 3 0.06
63 46 0.94
ACGTcount: A:0.38, C:0.03, G:0.13, T:0.46
Consensus pattern (63 bp):
TTTTTTAGAATTAAGACTAAATTGATAAAATCTATAAATATTGTTAGACTAAATTTGTTGAAC
Found at i:79065601 original size:19 final size:21
Alignment explanation
Indices: 79065577--79065616 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
79065567 TTTTTTAAAA
79065577 TATAAA-ATTTGAATT-TTTT
1 TATAAATATTTGAATTATTTT
79065596 TATAAATATTTGAATTATTTT
1 TATAAATATTTGAATTATTTT
79065617 GTAATTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.32
20 9 0.47
21 4 0.21
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (21 bp):
TATAAATATTTGAATTATTTT
Found at i:79071213 original size:18 final size:18
Alignment explanation
Indices: 79071190--79071224 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
79071180 AAAAAATATA
79071190 TTTTAT-ATTAATATTTAT
1 TTTTATAATTAA-ATTTAT
79071208 TTTTATAATTAAATTTA
1 TTTTATAATTAAATTTA
79071225 AACGAAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTATAATTAAATTTAT
Found at i:79073452 original size:26 final size:26
Alignment explanation
Indices: 79073422--79073471 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
79073412 GCATATAAAA
* * *
79073422 AAAATATGATATTTAATAATAAATTT
1 AAAATATAATATATAATAAAAAATTT
79073448 AAAATATAATATATAATAAAAAAT
1 AAAATATAATATATAATAAAAAAT
79073472 ATATTTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (26 bp):
AAAATATAATATATAATAAAAAATTT
Found at i:79073478 original size:30 final size:29
Alignment explanation
Indices: 79073439--79073513 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 29
79073429 GATATTTAAT
*
79073439 AATAAATTTAAAATATAATATATAATAAAA
1 AATATATTTAAAATATAATA-ATAATAAAA
* *
79073469 AATATATTTATAAGA-ATAATAATTATATAA
1 AATATATTTA-AA-ATATAATAATAATAAAA
79073499 AATATA--TAAAATATA
1 AATATATTTAAAATATA
79073514 TTGGTTTAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
26 1 0.03
27 5 0.13
28 2 0.05
30 22 0.56
31 8 0.21
32 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (29 bp):
AATATATTTAAAATATAATAATAATAAAA
Found at i:79074026 original size:18 final size:18
Alignment explanation
Indices: 79073990--79074114 Score: 137
Period size: 18 Copynumber: 6.9 Consensus size: 18
79073980 AATTATATCT
*
79073990 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
*
79074009 TCTAATATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
79074027 TCTAAGATTGTAATCATA
1 TCTAAGATTGCAATCATA
*
79074045 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
* * *
79074062 TCTAAAATTACAATTATA
1 TCTAAGATTGCAATCATA
* *
79074080 TTTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
79074097 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
79074115 TGAAGATTAT
Statistics
Matches: 87, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
17 28 0.32
18 44 0.51
19 15 0.17
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:79074086 original size:35 final size:35
Alignment explanation
Indices: 79074003--79074101 Score: 126
Period size: 35 Copynumber: 2.8 Consensus size: 35
79073993 AAGATTGTAT
* * * **
79074003 ATCATATCTAATATTGCAATCATATCTAAGATTGTA
1 ATCATATCTAAGATTG-TATCATATCTAAAATTACA
79074039 ATCATATCTAAGATTGTATCATATCTAAAATTACA
1 ATCATATCTAAGATTGTATCATATCTAAAATTACA
* *
79074074 ATTATATTTAAGATTGTATCATATCTAA
1 ATCATATCTAAGATTGTATCATATCTAA
79074102 GATTGCATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
35 41 0.73
36 15 0.27
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (35 bp):
ATCATATCTAAGATTGTATCATATCTAAAATTACA
Found at i:79074086 original size:53 final size:53
Alignment explanation
Indices: 79073990--79074114 Score: 180
Period size: 53 Copynumber: 2.3 Consensus size: 53
79073980 AATTATATCT
* *
79073990 TCTAAGATTGTATATCATATCTAATATTGCAATCATATCTAAGATTGTAATCATA
1 TCTAAGATTG-ATATCATATCTAAAATTACAATCATATCTAAGATTGT-ATCATA
* *
79074045 TCTAAGATTG-TATCATATCTAAAATTACAATTATATTTAAGATTGTATCATA
1 TCTAAGATTGATATCATATCTAAAATTACAATCATATCTAAGATTGTATCATA
79074097 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
79074115 TGAAGATTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
52 16 0.25
53 32 0.50
54 6 0.09
55 10 0.16
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (53 bp):
TCTAAGATTGATATCATATCTAAAATTACAATCATATCTAAGATTGTATCATA
Found at i:79074181 original size:34 final size:34
Alignment explanation
Indices: 79074136--79074206 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
79074126 TTTCCATATG
*
79074136 AGTCAATCTTATAGATGGACCTTAAATCTTTTTA
1 AGTCAAGCTTATAGATGGACCTTAAATCTTTTTA
*
79074170 AGTCAAGCTTATAGATGGAGCTTAAATCTTTTTA
1 AGTCAAGCTTATAGATGGACCTTAAATCTTTTTA
79074204 AGT
1 AGT
79074207 AATGAGCCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.39
Consensus pattern (34 bp):
AGTCAAGCTTATAGATGGACCTTAAATCTTTTTA
Found at i:79074907 original size:9 final size:9
Alignment explanation
Indices: 79074893--79074931 Score: 78
Period size: 9 Copynumber: 4.3 Consensus size: 9
79074883 TCTCCTTTCA
79074893 TCTTCTTGT
1 TCTTCTTGT
79074902 TCTTCTTGT
1 TCTTCTTGT
79074911 TCTTCTTGT
1 TCTTCTTGT
79074920 TCTTCTTGT
1 TCTTCTTGT
79074929 TCT
1 TCT
79074932 CGGGAGGACC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.00, C:0.23, G:0.10, T:0.67
Consensus pattern (9 bp):
TCTTCTTGT
Found at i:79080510 original size:6 final size:6
Alignment explanation
Indices: 79080472--79080506 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
79080462 TCCTTTCCTC
* *
79080472 TTCTTG TTCTTG TTCTTG TTGTTG TTCTTC TTCTT
1 TTCTTG TTCTTG TTCTTG TTCTTG TTCTTG TTCTT
79080507 CTTCAAATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.17, G:0.14, T:0.69
Consensus pattern (6 bp):
TTCTTG
Found at i:79091992 original size:18 final size:18
Alignment explanation
Indices: 79091969--79092020 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
79091959 ACCCCATCTG
* *
79091969 GAGTAATCACTAGGTCTA
1 GAGTAATCACTAGGCCGA
* *
79091987 GAGTAATCGCTAGGCCGG
1 GAGTAATCACTAGGCCGA
*
79092005 GAGTAATCACTGGGCC
1 GAGTAATCACTAGGCC
79092021 TATTACCCCA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (18 bp):
GAGTAATCACTAGGCCGA
Found at i:79099739 original size:21 final size:21
Alignment explanation
Indices: 79099716--79099756 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
79099706 GAAATATATA
79099716 TTTATATAATTAAAATTTTAAT
1 TTTATA-AATTAAAATTTTAAT
* *
79099738 TTTCTAAATTAAATTTTTA
1 TTTATAAATTAAAATTTTA
79099757 TGAATTTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTATAAATTAAAATTTTAAT
Found at i:79107100 original size:21 final size:21
Alignment explanation
Indices: 79107056--79107102 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
79107046 GGTTACCGTT
*** *
79107056 CGAGAATCATGGACTGTGATG
1 CGAGAATCATGGACCACGAGG
79107077 CGAGAATCATGGACCACGAGG
1 CGAGAATCATGGACCACGAGG
79107098 CGAGA
1 CGAGA
79107103 CTAAACATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.19, G:0.34, T:0.15
Consensus pattern (21 bp):
CGAGAATCATGGACCACGAGG
Found at i:79123156 original size:14 final size:15
Alignment explanation
Indices: 79123120--79123157 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
79123110 AAAACATGGC
* *
79123120 CTAAACTAAACTAAA
1 CTAATCTAAACAAAA
79123135 CTAATCTAAACAAAA
1 CTAATCTAAACAAAA
79123150 C-AATCTAA
1 CTAATCTAA
79123158 TTTAGATGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.58, C:0.21, G:0.00, T:0.21
Consensus pattern (15 bp):
CTAATCTAAACAAAA
Found at i:79124629 original size:15 final size:17
Alignment explanation
Indices: 79124609--79124645 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
79124599 ATGATAATAA
79124609 AATTTT-AC-TATTTTT
1 AATTTTCACATATTTTT
79124624 AATTTTCACATATTTTT
1 AATTTTCACATATTTTT
79124641 -ATTTT
1 AATTTT
79124646 TTAAAAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 6 0.30
16 7 0.35
17 7 0.35
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (17 bp):
AATTTTCACATATTTTT
Found at i:79150182 original size:28 final size:27
Alignment explanation
Indices: 79150138--79150247 Score: 107
Period size: 28 Copynumber: 4.0 Consensus size: 27
79150128 CTACACAATC
* *
79150138 GATGTCTTGCACGCTAAGTGCTATACCG
1 GATGTCTTGCACACTAAGTGCCAT-CCG
*
79150166 GATGT-TTCGCACACTAAGTGCCATCCTT
1 GATGTCTT-GCACACTAAGTGCCATCC-G
* * *
79150194 TAT-ACTTCGCACACTAAGTGCCATTTCG
1 GATGTCTT-GCACACTAAGTGCCA-TCCG
79150222 GATGTCTTGCACACTAAGTGCCATCC
1 GATGTCTTGCACACTAAGTGCCATCC
79150248 TCAATACTTC
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
27 6 0.09
28 56 0.84
29 5 0.07
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (27 bp):
GATGTCTTGCACACTAAGTGCCATCCG
Found at i:79150237 original size:56 final size:56
Alignment explanation
Indices: 79150146--79150271 Score: 182
Period size: 56 Copynumber: 2.2 Consensus size: 56
79150136 TCGATGTCTT
* * **
79150146 GCACGCTAAGTGCTATACCGGATGTTTCGCACACTAAGTGCCATCCTTTATACTTC
1 GCACACTAAGTGCCATACCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC
**
79150202 GCACACTAAGTGCCATTTCGGATGTCTT-GCACACTAAGTGCCATCCTCAATACTTC
1 GCACACTAAGTGCCATACCGGATGT-TTCGCACACTAAGTGCCATCCTCAATACTTC
79150258 GCACACTAAGTGCC
1 GCACACTAAGTGCC
79150272 GTTCGATTGG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
56 61 0.97
57 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (56 bp):
GCACACTAAGTGCCATACCGGATGTTTCGCACACTAAGTGCCATCCTCAATACTTC
Found at i:79150261 original size:28 final size:28
Alignment explanation
Indices: 79150171--79150271 Score: 125
Period size: 28 Copynumber: 3.6 Consensus size: 28
79150161 TACCGGATGT
**
79150171 TTCGCACACTAAGTGCCATCCTTTATAC
1 TTCGCACACTAAGTGCCATCCTCAATAC
* * *
79150199 TTCGCACACTAAGTGCCAT-TTCGGATGTC
1 TTCGCACACTAAGTGCCATCCTC-AAT-AC
79150228 TT-GCACACTAAGTGCCATCCTCAATAC
1 TTCGCACACTAAGTGCCATCCTCAATAC
79150255 TTCGCACACTAAGTGCC
1 TTCGCACACTAAGTGCC
79150272 GTTCGATTGG
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
27 4 0.06
28 53 0.85
29 5 0.08
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.29
Consensus pattern (28 bp):
TTCGCACACTAAGTGCCATCCTCAATAC
Found at i:79150713 original size:68 final size:63
Alignment explanation
Indices: 79150566--79150713 Score: 165
Period size: 63 Copynumber: 2.3 Consensus size: 63
79150556 ATATAGTTCG
** * *
79150566 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCGATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACAAATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
* *
79150629 GCTCTCTTGT-CTACATGGTGTACAAATAGTATCACCCATGCGACCTAGCTACA-TTATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACAAATAGTACCACCCATGCGACCTAGC--CAGTT-T-A--TC
79150692 TCGTA
59 TCGTA
79150697 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
79150714 ATGTGCACTC
Statistics
Matches: 71, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
62 1 0.01
63 41 0.58
64 2 0.03
65 3 0.04
66 1 0.01
68 22 0.31
69 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACAAATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
Found at i:79154371 original size:68 final size:68
Alignment explanation
Indices: 79154203--79154378 Score: 166
Period size: 68 Copynumber: 2.6 Consensus size: 68
79154193 TAGTACCACT
* * * * *
79154203 CATGCGACCTAGC--CA-ATGTGTCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAAT
1 CATGCGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACGTCAC-TCGAAT
79154265 CACA
65 CACA
** * *
79154269 CATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACGTC-C-CGT
1 CATGCGACCTAGCTACACATATATCT--CGTAGCTCTCTTGTCTACATGGTG-TACGTCACTCGA
79154331 ATCACA
63 ATCACA
*
79154337 CATGTGACCTAGCTACTACATAGTATCTCGTAGCTCTCTTGT
1 CATGCGACCTAGCTAC-ACATA-TATCTCGTAGCTCTCTTGT
79154379 ACACATGATG
Statistics
Matches: 91, Mismatches: 11, Indels: 14
0.78 0.09 0.12
Matches are distributed among these distances:
66 13 0.14
68 38 0.42
69 8 0.09
70 6 0.07
71 26 0.29
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (68 bp):
CATGCGACCTAGCTACACATATATCTCGTAGCTCTCTTGTCTACATGGTGTACGTCACTCGAATC
ACA
Found at i:79158012 original size:37 final size:37
Alignment explanation
Indices: 79157962--79158035 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
79157952 AAACTTGTAT
79157962 GTATTCAAGTTCAATCTCAAATTCGACTTAATAATTA
1 GTATTCAAGTTCAATCTCAAATTCGACTTAATAATTA
*
79157999 GTATTCAAGTTCAATCTCAAATTCGACTTGATAATTA
1 GTATTCAAGTTCAATCTCAAATTCGACTTAATAATTA
79158036 AACTTAAGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.38
Consensus pattern (37 bp):
GTATTCAAGTTCAATCTCAAATTCGACTTAATAATTA
Found at i:79163752 original size:13 final size:13
Alignment explanation
Indices: 79163736--79163775 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
79163726 TTATATTATC
79163736 TTATTACCTAATT
1 TTATTACCTAATT
*
79163749 TTA-TA-CT-ATC
1 TTATTACCTAATT
79163759 TTATTACCTAATT
1 TTATTACCTAATT
79163772 TTAT
1 TTAT
79163776 AATTTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 6
0.73 0.07 0.20
Matches are distributed among these distances:
10 5 0.23
11 4 0.18
12 4 0.18
13 9 0.41
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (13 bp):
TTATTACCTAATT
Found at i:79163752 original size:23 final size:23
Alignment explanation
Indices: 79163721--79163776 Score: 94
Period size: 23 Copynumber: 2.4 Consensus size: 23
79163711 TGTAACACTT
* *
79163721 TAATATTATATTATCTTATTACC
1 TAATTTTATACTATCTTATTACC
79163744 TAATTTTATACTATCTTATTACC
1 TAATTTTATACTATCTTATTACC
79163767 TAATTTTATA
1 TAATTTTATA
79163777 ATTTTTAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.54
Consensus pattern (23 bp):
TAATTTTATACTATCTTATTACC
Found at i:79165902 original size:18 final size:19
Alignment explanation
Indices: 79165869--79165904 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
79165859 ATGTTAAGTC
*
79165869 CTAAACAAAAGCAAAGAAT
1 CTAAACAAAAGAAAAGAAT
79165888 CTAAA-AAAAGAAAAGAA
1 CTAAACAAAAGAAAAGAA
79165905 AGCTGATGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.69, C:0.11, G:0.11, T:0.08
Consensus pattern (19 bp):
CTAAACAAAAGAAAAGAAT
Found at i:79171454 original size:21 final size:22
Alignment explanation
Indices: 79171430--79171475 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
79171420 AATTAGATAG
79171430 ATAAATAAT-AA-AAATTCTTAC
1 ATAAATAATAAATAAATT-TTAC
*
79171451 ATAAATGATAAATAAATTTTAC
1 ATAAATAATAAATAAATTTTAC
79171473 ATA
1 ATA
79171476 TATTTCTAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 9 0.41
23 5 0.23
ACGTcount: A:0.57, C:0.07, G:0.02, T:0.35
Consensus pattern (22 bp):
ATAAATAATAAATAAATTTTAC
Found at i:79175815 original size:4 final size:4
Alignment explanation
Indices: 79175806--79175834 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
79175796 AGCAAACGTG
79175806 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
79175835 TAGAAAAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:79176662 original size:47 final size:47
Alignment explanation
Indices: 79176598--79176708 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
79176588 GACATTGAGT
* *
79176598 CGATG-AGACACTATGTGT-CGACTACTGTTAAAGTTCCGGATTTGTTC
1 CGATGAAG-CACTATGTGTACGA-TAATGTTAAAGTTCCGGATTTATTC
* * *
79176645 CGATGAAGTACTTTGTGTACTATAATGTTAAAGTTCCGGATTTATTC
1 CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
79176692 CGATGAAGCACTATGTG
1 CGATGAAGCACTATGTG
79176709 CTTATCCCGG
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
47 51 0.93
48 4 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (47 bp):
CGATGAAGCACTATGTGTACGATAATGTTAAAGTTCCGGATTTATTC
Found at i:79181567 original size:18 final size:18
Alignment explanation
Indices: 79181539--79181574 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
79181529 AAAAAAATAA
79181539 AAATATTAATATT-TTAT
1 AAATATTAATATTCTTAT
79181556 AAATATTTAATATTCTTAT
1 AAATA-TTAATATTCTTAT
79181575 TCATGAAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.29
18 8 0.47
19 4 0.24
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (18 bp):
AAATATTAATATTCTTAT
Found at i:79182150 original size:23 final size:25
Alignment explanation
Indices: 79182101--79182148 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
79182091 ATCTTTTAAA
79182101 AAAAATTATTATAGATAAAATTTTT
1 AAAAATTATTATAGATAAAATTTTT
79182126 AAAAATATATTAT-GA-AAAATTTT
1 AAAAAT-TATTATAGATAAAATTTT
79182149 AATTAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.36
25 8 0.36
26 6 0.27
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
AAAAATTATTATAGATAAAATTTTT
Found at i:79185737 original size:17 final size:16
Alignment explanation
Indices: 79185695--79185761 Score: 98
Period size: 16 Copynumber: 4.1 Consensus size: 16
79185685 TGGTTCGCTA
* *
79185695 TATTGAATTAGAGGCG
1 TATTGGATTAGAGGTG
*
79185711 TATTGGATTAGAGATG
1 TATTGGATTAGAGGTG
79185727 TATTGGGATTAGAGGTG
1 TATT-GGATTAGAGGTG
79185744 TATTGGATTAGAGGTG
1 TATTGGATTAGAGGTG
79185760 TA
1 TA
79185762 ATAGCTAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
16 31 0.67
17 15 0.33
ACGTcount: A:0.28, C:0.01, G:0.34, T:0.36
Consensus pattern (16 bp):
TATTGGATTAGAGGTG
Found at i:79185826 original size:44 final size:45
Alignment explanation
Indices: 79185742--79185832 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
79185732 GGATTAGAGG
* * *
79185742 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
79185787 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
79185831 TG
1 TG
79185833 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:79186017 original size:18 final size:17
Alignment explanation
Indices: 79185996--79186030 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
79185986 TTATTATTAA
*
79185996 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
79186014 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
79186031 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:79186137 original size:18 final size:17
Alignment explanation
Indices: 79186116--79186150 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
79186106 TTATTATTAA
*
79186116 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
79186134 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
79186151 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:79186192 original size:120 final size:120
Alignment explanation
Indices: 79185979--79187080 Score: 2107
Period size: 120 Copynumber: 9.2 Consensus size: 120
79185969 ATCATATTTA
* *
79185979 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
79186044 TATTCTTATATTAATTTACTGAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
* *
79186099 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
79186164 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79186219 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
79186284 TATTCTTATATTAAATTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
**
79186339 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAATGAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
79186404 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79186459 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTT-AAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
79186523 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79186578 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
79186643 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79186698 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
79186763 TATTCTTATATTAATTTACTCAAATCACAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79186818 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
*
79186883 TATTCTTATATTAATTTACTCAAATCACAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79186938 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
79187003 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
66 TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
79187058 AACATAATTATTATTAAATATAT
1 AACATAATTATTATTAAATATAT
79187081 AACTTGAAAA
Statistics
Matches: 970, Mismatches: 11, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
119 117 0.12
120 853 0.88
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTTTAATTAAACTATATAATTTAAAAAAATTCTTAATAATTAA
TATTCTTATATTAATTTACTCAAATCATAATATATGATACTGTAAAATATAAATT
Found at i:79191420 original size:23 final size:23
Alignment explanation
Indices: 79191392--79191475 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
79191382 AACATAAACA
*
79191392 AATCAACACAATTTCCAGCAGAC
1 AATCAAAACAATTTCCAGCAGAC
*
79191415 AATCAAAACAATTTCCAGCAGCC
1 AATCAAAACAATTTCCAGCAGAC
* *
79191438 AATCATACCAATTTCCAGCAGAC
1 AATCAAAACAATTTCCAGCAGAC
79191461 AATCAAAACAATTTC
1 AATCAAAACAATTTC
79191476 AGAACAAATC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.44, C:0.29, G:0.07, T:0.20
Consensus pattern (23 bp):
AATCAAAACAATTTCCAGCAGAC
Found at i:79191503 original size:22 final size:21
Alignment explanation
Indices: 79191461--79191506 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
79191451 TCCAGCAGAC
* *
79191461 AATCAAAACAATTTCAGAACA
1 AATCAAAACAATATCAAAACA
*
79191482 AATCAAGACCAATATCAAAACA
1 AATCAA-AACAATATCAAAACA
79191504 AAT
1 AAT
79191507 GCAACAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.59, C:0.20, G:0.04, T:0.17
Consensus pattern (21 bp):
AATCAAAACAATATCAAAACA
Found at i:79193386 original size:5 final size:5
Alignment explanation
Indices: 79193376--79193401 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
79193366 AAAGAGAGTT
79193376 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
79193402 AAGAGAGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:79199415 original size:16 final size:18
Alignment explanation
Indices: 79199394--79199427 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
79199384 TTTTTTATTA
79199394 AATA-TTTATT-TATTTT
1 AATATTTTATTATATTTT
79199410 AATATTTTATTATATTTT
1 AATATTTTATTATATTTT
79199428 TATAGGATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 6 0.38
18 6 0.38
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
AATATTTTATTATATTTT
Found at i:79200139 original size:22 final size:21
Alignment explanation
Indices: 79200114--79200168 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
79200104 TTTAAATACT
*
79200114 ATAAGTTACACCATATATAAAA
1 ATAAGTTACACAATAT-TAAAA
*
79200136 ATAAAATGTA-ACAATATTAAAA
1 AT-AAGT-TACACAATATTAAAA
79200158 ATAAGTTACAC
1 ATAAGTTACAC
79200169 TTAGTTGAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
20 2 0.07
21 5 0.19
22 9 0.33
23 9 0.33
24 2 0.07
ACGTcount: A:0.56, C:0.11, G:0.05, T:0.27
Consensus pattern (21 bp):
ATAAGTTACACAATATTAAAA
Found at i:79200263 original size:19 final size:20
Alignment explanation
Indices: 79200231--79200268 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
79200221 AATCAACTTA
*
79200231 ATTTTTTTTATCT-ATATTC
1 ATTTTTTGTATCTAATATTC
*
79200250 ATTTTTTGTGTCTAATATT
1 ATTTTTTGTATCTAATATT
79200269 TTTATTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.21, C:0.08, G:0.05, T:0.66
Consensus pattern (20 bp):
ATTTTTTGTATCTAATATTC
Found at i:79216035 original size:7 final size:7
Alignment explanation
Indices: 79215985--79216016 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
79215975 ATCTCCAATA
79215985 AAAAATT
1 AAAAATT
79215992 AAAAATT
1 AAAAATT
79215999 AAAAATT
1 AAAAATT
79216006 AAAAA-T
1 AAAAATT
79216012 AAAAA
1 AAAAA
79216017 CTACTTTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (7 bp):
AAAAATT
Found at i:79223716 original size:143 final size:146
Alignment explanation
Indices: 79223545--79223839 Score: 506
Period size: 144 Copynumber: 2.0 Consensus size: 146
79223535 ATAAAAATAA
*
79223545 TTAATCATTAGACATTTTAACTATTTATATCTGCTTTTACAGATTTCTGACGAA-TTTTTTTTCT
1 TTAATCATTAGACATTTTAACTATTTATATATGCTTTTACAGATTTCTGACGAATTTTTTTTTCT
79223609 AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGATAA-TTTTTTA-TTTTTAAAT
66 AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGATAATTTTTTTATTTTTTAAAT
*
79223672 ACGAACCTGTATAAAT
131 ACAAACCTGTATAAAT
* *
79223688 TTAATCATTAGACATTTTAACTATTTATATATGCTTTTACATATTTCTTACGAATTTTTTTTTCT
1 TTAATCATTAGACATTTTAACTATTTATATATGCTTTTACAGATTTCTGACGAATTTTTTTTTCT
*
79223753 AGTATAATAAGAAAACCTTGCTGATGATTCTTTTGGTATAATGATAATTTTTTTTATTTTTTAAA
66 AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGATAA-TTTTTTTATTTTTTAAA
*
79223818 TACAAATCTGTATAAAT
130 TACAAACCTGTATAAAT
79223835 TTAAT
1 TTAAT
79223840 ATATTTTTAT
Statistics
Matches: 142, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
143 51 0.36
144 56 0.39
146 7 0.05
147 28 0.20
ACGTcount: A:0.33, C:0.11, G:0.09, T:0.48
Consensus pattern (146 bp):
TTAATCATTAGACATTTTAACTATTTATATATGCTTTTACAGATTTCTGACGAATTTTTTTTTCT
AGTATAATAAGAAAACCTCGCTGATGATTCTTTTGGTATAATGATAATTTTTTTATTTTTTAAAT
ACAAACCTGTATAAAT
Found at i:79231906 original size:70 final size:70
Alignment explanation
Indices: 79231822--79231963 Score: 266
Period size: 70 Copynumber: 2.0 Consensus size: 70
79231812 ATTCCATTTA
*
79231822 TAATACTTGAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG
1 TAATACTTAAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG
79231887 ATGAT
66 ATGAT
*
79231892 TAATACTTAAATTTATTAGTTTAAAATTTTGAAATAAAAAGGAAAATAAAGAGTTGTAAGTTGTG
1 TAATACTTAAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG
79231957 ATGAT
66 ATGAT
79231962 TA
1 TA
79231964 TAACTGTAAT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.46, C:0.01, G:0.15, T:0.37
Consensus pattern (70 bp):
TAATACTTAAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG
ATGAT
Found at i:79232007 original size:70 final size:68
Alignment explanation
Indices: 79231822--79232000 Score: 173
Period size: 70 Copynumber: 2.5 Consensus size: 68
79231812 ATTCCATTTA
* * ***
79231822 TAATACTTGAATTTATTAGTTTAAAATTTTGAAATAAAAAAGAAAATAAAGAGTTGTAAGTTGTG
1 TAATACTTAAATTTATGAGTTTAAAAGCATGAAAT--AAAAGAAAATAAAGAGTTGTAAGTTGTG
79231887 ATGAT
64 ATGAT
* ***
79231892 TAATACTTAAATTTATTAGTTTAAAATTTTGAAATAAAAAGGAAAATAAAGAGTTGTAAGTTGTG
1 TAATACTTAAATTTATGAGTTTAAAAGCATGAAAT-AAAA-GAAAATAAAGAGTTGTAAGTTGTG
79231957 ATGAT
64 ATGAT
*
79231962 T-ATAACTGTAATACTTTAATGAGTTT-TAAGCATGAAATA
1 TAAT-ACT-TAA-A-TTT-ATGAGTTTAAAAGCATGAAATA
79232001 TAGAAAAAAG
Statistics
Matches: 97, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
69 7 0.07
70 67 0.69
71 3 0.03
72 2 0.02
73 11 0.11
74 7 0.07
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.37
Consensus pattern (68 bp):
TAATACTTAAATTTATGAGTTTAAAAGCATGAAATAAAAGAAAATAAAGAGTTGTAAGTTGTGAT
GAT
Found at i:79232149 original size:22 final size:20
Alignment explanation
Indices: 79232111--79232155 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 20
79232101 AAATTCTGAA
* *
79232111 TATTTTATTTTAAATAATAT
1 TATTTTATATTAAATAAAAT
79232131 TATTTTATATTAATTATAAAAT
1 TATTTTATATTAA--ATAAAAT
79232153 TAT
1 TAT
79232156 ATTTTATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 12 0.57
22 9 0.43
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTTTATATTAAATAAAAT
Found at i:79232496 original size:28 final size:28
Alignment explanation
Indices: 79232460--79232520 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
79232450 AAATATATTC
79232460 AAATAATATAAT-TTATTTTAATTATAAA
1 AAATAATAT-ATCTTATTTTAATTATAAA
*
79232488 AAATTATATATCTTATTTTAATTATAAA
1 AAATAATATATCTTATTTTAATTATAAA
79232516 AAATA
1 AAATA
79232521 TTTTTATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 2 0.07
28 28 0.93
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (28 bp):
AAATAATATATCTTATTTTAATTATAAA
Found at i:79238483 original size:16 final size:16
Alignment explanation
Indices: 79238450--79238483 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
79238440 TGATACTGTT
* *
79238450 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
79238466 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
79238482 AA
1 AA
79238484 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:79241310 original size:21 final size:21
Alignment explanation
Indices: 79241284--79241324 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79241274 AGACGAGCAA
* *
79241284 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
79241305 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
79241325 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:79246927 original size:20 final size:20
Alignment explanation
Indices: 79246895--79246932 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
79246885 TTGCATTATT
79246895 ATTATTTTATAACACAAACA
1 ATTATTTTATAACACAAACA
*
79246915 ATTAGTTTT-TAACTCAAA
1 ATTA-TTTTATAACACAAA
79246933 ACATTAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
ATTATTTTATAACACAAACA
Found at i:79254943 original size:31 final size:29
Alignment explanation
Indices: 79254884--79254954 Score: 79
Period size: 31 Copynumber: 2.4 Consensus size: 29
79254874 AAATGTTGGG
** *
79254884 CCCTTATTTGACAATTTTAAAAGTTTTAA
1 CCCTTATTTGACAATTCAAAAAGATTTAA
79254913 CCCTTATTTGAGCAACTTCAAAAAGATTTAA
1 CCCTTATTTGA-CAA-TTCAAAAAGATTTAA
* *
79254944 ACTTTATTTGA
1 CCCTTATTTGA
79254955 TATTTTAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 11 0.31
30 3 0.09
31 21 0.60
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.41
Consensus pattern (29 bp):
CCCTTATTTGACAATTCAAAAAGATTTAA
Found at i:79261925 original size:20 final size:20
Alignment explanation
Indices: 79261888--79261924 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 20
79261878 CAGTTTTTTC
79261888 ATTTTAATTTTAGGTTTTGA
1 ATTTTAATTTTAGGTTTTGA
*
79261908 ATTTT-ATTTTATGTTTT
1 ATTTTAATTTTAGGTTTT
79261925 TCTTAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.68
Consensus pattern (20 bp):
ATTTTAATTTTAGGTTTTGA
Found at i:79268954 original size:9 final size:9
Alignment explanation
Indices: 79268942--79268966 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
79268932 TGGTGGTGTA
79268942 GGTGATGGT
1 GGTGATGGT
79268951 GGTGATGGT
1 GGTGATGGT
79268960 GGTGATG
1 GGTGATG
79268967 AATCTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.12, C:0.00, G:0.56, T:0.32
Consensus pattern (9 bp):
GGTGATGGT
Found at i:79269378 original size:17 final size:18
Alignment explanation
Indices: 79269356--79269394 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
79269346 AGAATAAAAG
79269356 AAATTAACAAAAAAAC-T
1 AAATTAACAAAAAAACTT
**
79269373 AAATTAATTAAAAAACTT
1 AAATTAACAAAAAAACTT
79269391 AAAT
1 AAAT
79269395 ATAGTAACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATTAACAAAAAAACTT
Found at i:79269658 original size:18 final size:21
Alignment explanation
Indices: 79269635--79269690 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 21
79269625 TTTATATTTT
79269635 AATTATTTAA-T-TTTAAAA-
1 AATTATTTAATTATTTAAAAG
*
79269653 AATTATTAAATTATTTAAAAG
1 AATTATTTAATTATTTAAAAG
79269674 AATTTATTTAAGTTATT
1 AA-TTATTTAA-TTATT
79269691 GAATTATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
18 9 0.29
19 1 0.03
20 7 0.23
21 2 0.06
22 7 0.23
23 5 0.16
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (21 bp):
AATTATTTAATTATTTAAAAG
Found at i:79269690 original size:31 final size:31
Alignment explanation
Indices: 79269655--79269717 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
79269645 TTTTAAAAAA
79269655 TTATTAAATTATTTAAAAGAATTTATTTAAG
1 TTATTAAATTATTTAAAAGAATTTATTTAAG
* ***
79269686 TTATTGAATTATTTAAAATTTTTTATTTAAG
1 TTATTAAATTATTTAAAAGAATTTATTTAAG
79269717 T
1 T
79269718 CGTTGAGTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (31 bp):
TTATTAAATTATTTAAAAGAATTTATTTAAG
Found at i:79275025 original size:40 final size:40
Alignment explanation
Indices: 79274942--79275204 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
79274932 TTGAATGCTG
* * * * * *
79274942 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
79274982 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
79275022 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
79275062 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
79275102 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
79275142 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
79275181 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
79275205 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:79275224 original size:79 final size:80
Alignment explanation
Indices: 79274981--79275239 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
79274971 AAGTGAATAT
* * * * * *
79274981 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
79275045 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
79275061 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
79275126 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
79275141 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
79275205 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
79275220 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
79275240 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:79282454 original size:40 final size:40
Alignment explanation
Indices: 79282371--79282633 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
79282361 TTGAATGCTG
* * * * * *
79282371 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
79282411 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
79282451 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
79282491 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
79282531 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
79282571 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
79282610 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
79282634 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:79282653 original size:79 final size:80
Alignment explanation
Indices: 79282410--79282668 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
79282400 AAGTGAATAT
* * * * * *
79282410 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
79282474 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
79282490 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
79282555 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
79282570 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
79282634 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
79282649 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
79282669 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:79285007 original size:19 final size:18
Alignment explanation
Indices: 79284973--79285010 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
79284963 AACACTTGTC
79284973 TTTTTAATTTTATAATTA
1 TTTTTAATTTTATAATTA
79284991 TTTTTACATCTTT-TAATTA
1 TTTTTA-AT-TTTATAATTA
79285010 T
1 T
79285011 AAATTTGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 9 0.50
20 3 0.17
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (18 bp):
TTTTTAATTTTATAATTA
Found at i:79290323 original size:24 final size:25
Alignment explanation
Indices: 79290296--79290348 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
79290286 TCAAAAGATG
** *
79290296 TAATAATAAATTTAAAT-TTTATAT
1 TAATAATAAATAAAAATGATTATAT
79290320 TAAT-ATAAATAAAAATGATTATAT
1 TAATAATAAATAAAAATGATTATAT
79290344 TAATA
1 TAATA
79290349 TTAGATTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 10 0.42
24 14 0.58
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
TAATAATAAATAAAAATGATTATAT
Found at i:79299115 original size:23 final size:23
Alignment explanation
Indices: 79299088--79299133 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
79299078 ATGTGTATTA
79299088 ATTAA-TATATTAACAAATAAATT
1 ATTAATTA-ATTAACAAATAAATT
* *
79299111 ATTAATTAATTATCAATTAAATT
1 ATTAATTAATTAACAAATAAATT
79299134 TGTGACATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTAATTAATTAACAAATAAATT
Found at i:79302435 original size:20 final size:21
Alignment explanation
Indices: 79302397--79302436 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
79302387 TTGTATTTTA
*
79302397 TTCTTCAACTTTTTCCTTTCT
1 TTCTTCAACATTTTCCTTTCT
*
79302418 TTCTTC-ACATTTTGCTTTC
1 TTCTTCAACATTTTCCTTTC
79302437 CTGTTTAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.10, C:0.28, G:0.03, T:0.60
Consensus pattern (21 bp):
TTCTTCAACATTTTCCTTTCT
Found at i:79309217 original size:22 final size:23
Alignment explanation
Indices: 79309182--79309233 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
79309172 ATAATTATAG
*
79309182 ATTTATTGTTTAAATTTCTATTAT
1 ATTT-TTGTTTAAATTTCTAATAT
*
79309206 ATTTTTG-TTAAATTTTTAATAT
1 ATTTTTGTTTAAATTTCTAATAT
79309228 -TTTTTG
1 ATTTTTG
79309234 ATTATTCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 6 0.23
22 13 0.50
23 3 0.12
24 4 0.15
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (23 bp):
ATTTTTGTTTAAATTTCTAATAT
Found at i:79310490 original size:16 final size:16
Alignment explanation
Indices: 79310469--79310499 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79310459 GTTGAGAATT
79310469 AATTTAGTTTAAATAC
1 AATTTAGTTTAAATAC
*
79310485 AATTTATTTTAAATA
1 AATTTAGTTTAAATA
79310500 GAAAAATCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (16 bp):
AATTTAGTTTAAATAC
Found at i:79313891 original size:39 final size:38
Alignment explanation
Indices: 79313843--79313918 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 38
79313833 TACCGGATAC
*
79313843 CAACTTTACTTCG-GCTAGGCCGATGAGACACTGGGTGT
1 CAACTTTACTTCGAACTA-GCCGATGAGACACTGGGTGT
* *
79313881 CAACTATTACTTCGAACTATCCGATGAGGCACTGGGTG
1 CAACT-TTACTTCGAACTAGCCGATGAGACACTGGGTG
79313919 CTATATTGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 5 0.15
39 25 0.76
40 3 0.09
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (38 bp):
CAACTTTACTTCGAACTAGCCGATGAGACACTGGGTGT
Found at i:79315134 original size:3 final size:3
Alignment explanation
Indices: 79315111--79315251 Score: 55
Period size: 3 Copynumber: 48.3 Consensus size: 3
79315101 GGGGAGAGTG
* * *
79315111 TTA TTT TTA ATA TTG TTA TTA TTA -TA TTTA TTA -TA TTA -TA TTTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA -TTA
* * * **
79315155 TT- TTA TTA CTG TTA CTA TTA TT- TTA -TA TATA TTTA TTA CCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA -TTA TTA TTA TTA
* * ** * * *
79315199 TT- TTT TTA TTA TTA TTA ATA ACA -TA TTG TTA TTT TTA TTA TTG TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
79315245 TTA TTA T
1 TTA TTA T
79315252 CATGGTGCTA
Statistics
Matches: 100, Mismatches: 26, Indels: 24
0.67 0.17 0.16
Matches are distributed among these distances:
2 15 0.15
3 76 0.76
4 8 0.08
5 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:79315147 original size:14 final size:14
Alignment explanation
Indices: 79315130--79315162 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
79315120 ATATTGTTAT
79315130 TATTATATTTATTA
1 TATTATATTTATTA
*
79315144 TATTATATTTATTT
1 TATTATATTTATTA
79315158 TATTA
1 TATTA
79315163 CTGTTACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTATATTTATTA
Found at i:79315168 original size:40 final size:39
Alignment explanation
Indices: 79315115--79315191 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 39
79315105 AGAGTGTTAT
* *
79315115 TTTTAATATTGTTATTATTATATTTAT-TATATTATATTTA
1 TTTTAATACTGTTACTATTAT-TTTATATATATT-TATTTA
*
79315155 TTTTATTACTGTTACTATTATTTTATATATATTTATT
1 TTTTAATACTGTTACTATTATTTTATATATATTTATT
79315192 ACCATTATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 9 0.27
40 24 0.73
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (39 bp):
TTTTAATACTGTTACTATTATTTTATATATATTTATTTA
Found at i:79315211 original size:24 final size:23
Alignment explanation
Indices: 79315149--79315215 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
79315139 TATTATATTA
* * *
79315149 TATTTATTTTATTACTGTTACTAT
1 TATTT-TTTTATTATTATTACCAT
*
79315173 TA-TTTTATATATATTTATTACCAT
1 TATTTTTTTAT-TA-TTATTACCAT
79315197 TATTTTTTTATTATTATTA
1 TATTTTTTTATTATTATTA
79315216 ATAACATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
22 5 0.14
23 10 0.29
24 13 0.37
25 7 0.20
ACGTcount: A:0.28, C:0.06, G:0.01, T:0.64
Consensus pattern (23 bp):
TATTTTTTTATTATTATTACCAT
Found at i:79315637 original size:82 final size:81
Alignment explanation
Indices: 79315538--79315691 Score: 186
Period size: 82 Copynumber: 1.9 Consensus size: 81
79315528 AATTTTATAT
* * ** * * *
79315538 TTTCATCACCT--TATATATTTTCTTTTTATATTTGTTATGATTATTATTACTATTATTGTTTTA
1 TTTCATCACCTCATATATATATT-ATTTTATATTT-TTACCATTAATATTACTATTAATGTATTA
79315601 TTATTATTTCTTACATAC
64 TTATTATTTCTTACATAC
* *
79315619 TTTCATCATCCTCATATATATATTATTTTCTATTTTTACCATTAATATTATTATTAATGTATTAT
1 TTTCATCA-CCTCATATATATATTATTTTATATTTTTACCATTAATATTACTATTAATGTATTAT
79315684 TATTATTT
65 TATTATTT
79315692 GTGTTATTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
81 8 0.13
82 35 0.57
83 9 0.15
84 9 0.15
ACGTcount: A:0.27, C:0.11, G:0.03, T:0.59
Consensus pattern (81 bp):
TTTCATCACCTCATATATATATTATTTTATATTTTTACCATTAATATTACTATTAATGTATTATT
ATTATTTCTTACATAC
Found at i:79340786 original size:24 final size:24
Alignment explanation
Indices: 79340750--79340800 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
79340740 AACGAAGGAT
*
79340750 GGACCTTTCGGTGATGGAATATCA
1 GGACCTTTAGGTGATGGAATATCA
* *
79340774 GGACTTTTAGGTGGTGGAATATCA
1 GGACCTTTAGGTGATGGAATATCA
79340798 GGA
1 GGA
79340801 GGGATGCTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.29
Consensus pattern (24 bp):
GGACCTTTAGGTGATGGAATATCA
Found at i:79342964 original size:27 final size:28
Alignment explanation
Indices: 79342917--79342969 Score: 65
Period size: 27 Copynumber: 1.9 Consensus size: 28
79342907 AAATAATCAC
* *
79342917 AATTTCATTATTTATTAATTTGAATTTG
1 AATTTCATTATTTAATAATTTCAATTTG
79342945 AATTT-ATTATTATAAT-ATTTCAATT
1 AATTTCATTATT-TAATAATTTCAATT
79342970 ATAAAAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 14 0.64
28 8 0.36
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.57
Consensus pattern (28 bp):
AATTTCATTATTTAATAATTTCAATTTG
Found at i:79345459 original size:20 final size:20
Alignment explanation
Indices: 79345418--79345460 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
79345408 ATTTTTGGCC
* *
79345418 AAAAATCTATTTTATTATTT
1 AAAAATATATTTTATTAATT
79345438 AAAAATATA-TTTATATAATT
1 AAAAATATATTTTAT-TAATT
79345458 AAA
1 AAA
79345461 TTTTAATTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
AAAAATATATTTTATTAATT
Found at i:79346732 original size:21 final size:21
Alignment explanation
Indices: 79346708--79346747 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
79346698 GTTTTAGCTG
79346708 CTGAAAT-GTTGGTTTTTTTGT
1 CTGAAATAGTT-GTTTTTTTGT
*
79346729 CTGATATAGTTGTTTTTTT
1 CTGAAATAGTTGTTTTTTT
79346748 ATTGTATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.15, C:0.05, G:0.20, T:0.60
Consensus pattern (21 bp):
CTGAAATAGTTGTTTTTTTGT
Found at i:79348082 original size:172 final size:172
Alignment explanation
Indices: 79347796--79348123 Score: 647
Period size: 172 Copynumber: 1.9 Consensus size: 172
79347786 GGGTAAAATA
79347796 CATAGAAAGTTATTCTCCATTATCCTCTTTTATATCCCTTACATGGAGGTTCCTTGTTTGCATAT
1 CATAGAAAGTTATTCTCCATTATCCTCTTTTATATCCCTTACATGGAGGTTCCTTGTTTGCATAT
79347861 CTTTCCTACTGATGTCCATATGCCTCAATTGTTGGGACATTTTTGTAAAGTTTATTTCATTAAAC
66 CTTTCCTACTGATGTCCATATGCCTCAATTGTTGGGACATTTTTGTAAAGTTTATTTCATTAAAC
79347926 CCGAGATTTATTGGATTACGTTAATTTTTGTAAAGTTTATGT
131 CCGAGATTTATTGGATTACGTTAATTTTTGTAAAGTTTATGT
79347968 CATAGAAAGTTATTCTCCATTATCCTCTTTTATATCCCTTACATGGAGGTTCCTTGTTTGCATAT
1 CATAGAAAGTTATTCTCCATTATCCTCTTTTATATCCCTTACATGGAGGTTCCTTGTTTGCATAT
*
79348033 CTTTCCTACTGATGTCCATATGCCTCTATTGTTGGGACATTTTTGTAAAGTTTATTTCATTAAAC
66 CTTTCCTACTGATGTCCATATGCCTCAATTGTTGGGACATTTTTGTAAAGTTTATTTCATTAAAC
79348098 CCGAGATTTATTGGATTACGTTAATT
131 CCGAGATTTATTGGATTACGTTAATT
79348124 GTTTCTTTTA
Statistics
Matches: 155, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 155 1.00
ACGTcount: A:0.24, C:0.18, G:0.14, T:0.44
Consensus pattern (172 bp):
CATAGAAAGTTATTCTCCATTATCCTCTTTTATATCCCTTACATGGAGGTTCCTTGTTTGCATAT
CTTTCCTACTGATGTCCATATGCCTCAATTGTTGGGACATTTTTGTAAAGTTTATTTCATTAAAC
CCGAGATTTATTGGATTACGTTAATTTTTGTAAAGTTTATGT
Found at i:79351529 original size:216 final size:208
Alignment explanation
Indices: 79351136--79351532 Score: 469
Period size: 216 Copynumber: 1.9 Consensus size: 208
79351126 GCATTGAGAT
* *
79351136 TTTAGGGGGATTTGGATAGGAGGTTGTCATTGGTGAAGTTTAATATGAATTTAATGGTTTTTGTA
1 TTTAGGGGGATTTGGATAGGAGGTTGTCATTGATGAAGTTTAATATGAATTTAATGCTTTTTGTA
** * * * *
79351201 TTGGAGTTCCAAAAATGAATTATCAACAGGTGATCAGAGACAGTGGCAGTGGACATCTCCCTAGG
66 TTGGAGTTCCAAAAACAAATTACCAACAGGTGATCAAAGACAGTGGCAGCGGACATCTCCCCAGG
* ** * **
79351266 CATTTGGACTGAATTTGAATCTTGGAGTCATCACTATTGGGAGGGCTTTACCTGAATACCACTCT
131 CATTTAGACTGAATTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTACCTGAATACCACTCT
79351331 GGCCTGAACAAGA
196 GGCCTGAACAAGA
* *
79351344 TTTAGGGGGATTTGGATATGAGGGGTTGTCATTGATGAAGTTTATATTTGAATTTAATGCTTTTT
1 TTTAGGGGGATTTGGATA-G-GAGGTTGTCATTGATGAAGTTTA-ATATGAATTTAATGCTTTTT
* * *
79351409 GTATTGGTGAAGTT-CAAAAGACAAATTACCAATAGGTGATCAAAAGA-AGTGGC-GCGGTTCTT
63 GTATT-G-G-AGTTCCAAAA-ACAAATTACCAACAGGTGATC-AAAGACAGTGGCAGCGG-ACAT
* *
79351471 CTTCCCCCGGGCATTTAGA-TTAAGTTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTAC
122 C-T-CCCCAGGCATTTAGACTGAA-TTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTAC
79351533 TAAATACTAC
Statistics
Matches: 156, Mismatches: 21, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
208 18 0.12
209 1 0.01
210 21 0.13
211 23 0.15
212 1 0.01
213 9 0.06
214 30 0.19
215 8 0.05
216 45 0.29
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.33
Consensus pattern (208 bp):
TTTAGGGGGATTTGGATAGGAGGTTGTCATTGATGAAGTTTAATATGAATTTAATGCTTTTTGTA
TTGGAGTTCCAAAAACAAATTACCAACAGGTGATCAAAGACAGTGGCAGCGGACATCTCCCCAGG
CATTTAGACTGAATTCAAATCTTAGAGTCATCACTATTGAAAGGGCTTTACCTGAATACCACTCT
GGCCTGAACAAGA
Found at i:79353685 original size:39 final size:32
Alignment explanation
Indices: 79353632--79353706 Score: 50
Period size: 32 Copynumber: 2.3 Consensus size: 32
79353622 ATATAAAAAT
*
79353632 ATATATTATA-TATTATATTA-ACTTAATATTTA
1 ATATATTATATTATTATATTATA-TT-ATATATA
* *
79353664 AGTAT-TAATATATAATATATTATATTAT-TATA
1 A-TATATTATAT-TATTATATTATATTATATATA
*
79353696 TTATATTATAT
1 ATATATTATAT
79353707 ATAATATAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
31 3 0.09
32 13 0.39
33 5 0.15
34 11 0.33
35 1 0.03
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (32 bp):
ATATATTATATTATTATATTATATTATATATA
Found at i:79353702 original size:10 final size:9
Alignment explanation
Indices: 79353666--79353718 Score: 53
Period size: 8 Copynumber: 6.3 Consensus size: 9
79353656 AATATTTAAG
79353666 TATTA-ATA
1 TATTATATA
79353674 TA-TA-ATA
1 TATTATATA
79353681 TATTATAT-
1 TATTATATA
79353689 TATTATATTA
1 TATTATA-TA
79353699 TATTATATA
1 TATTATATA
*
79353708 TAATATA-A
1 TATTATATA
79353716 TAT
1 TAT
79353719 AAAAACATAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
7 7 0.18
8 14 0.36
9 11 0.28
10 7 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TATTATATA
Found at i:79353712 original size:39 final size:39
Alignment explanation
Indices: 79353632--79353719 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 39
79353622 ATATAAAAAT
*
79353632 ATATATTATATATTATATTAACTTAATATTTAAGTATTA
1 ATATATAATATATTATATTAACTTAATATTTAAGTATTA
79353671 ATATATAATATATTATATT-A-TT-ATA-TT-A-TATT-
1 ATATATAATATATTATATTAACTTAATATTTAAGTATTA
*
79353703 ATATATAATATAATATA
1 ATATATAATATATTATA
79353720 AAAACATAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
32 16 0.34
33 4 0.09
34 1 0.02
35 2 0.04
36 3 0.06
37 2 0.04
38 1 0.02
39 18 0.38
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (39 bp):
ATATATAATATATTATATTAACTTAATATTTAAGTATTA
Found at i:79354920 original size:22 final size:22
Alignment explanation
Indices: 79354891--79354947 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
79354881 TAGCACGTTA
79354891 AGTGCTCTCTGTTTAGCACATCT
1 AGTGCTCTCTGTTTAGCAC-TCT
* *
79354914 -GTGCTCTCTGTATAGCACTTT
1 AGTGCTCTCTGTTTAGCACTCT
79354935 AGTGCTCTCTGTT
1 AGTGCTCTCTGTT
79354948 CGTTTGTGCA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.14, C:0.25, G:0.19, T:0.42
Consensus pattern (22 bp):
AGTGCTCTCTGTTTAGCACTCT
Found at i:79357759 original size:46 final size:45
Alignment explanation
Indices: 79357709--79357973 Score: 263
Period size: 46 Copynumber: 5.7 Consensus size: 45
79357699 TGAGCATCCA
79357709 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCG
* * * *
79357755 AACTCGTTAAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCCG
79357802 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCG
* * *
79357848 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAA-T--G--TCCG
*
79357895 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATGTCCG
* * * *
79357941 AGCTTGTTGAGTTGAGCCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79357974 GCGGGTTACA
Statistics
Matches: 182, Mismatches: 19, Indels: 36
0.77 0.08 0.15
Matches are distributed among these distances:
42 4 0.02
43 10 0.05
45 6 0.03
46 85 0.47
47 57 0.31
48 6 0.03
50 10 0.05
51 4 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATGTCCG
Found at i:79357815 original size:47 final size:47
Alignment explanation
Indices: 79357751--79357919 Score: 231
Period size: 47 Copynumber: 3.6 Consensus size: 47
79357741 GATGCGAATG
*
79357751 TCCGAACTCGTTAAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * *
79357798 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
79357844 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
79357891 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
79357920 ACTTATGGAT
Statistics
Matches: 106, Mismatches: 7, Indels: 18
0.81 0.05 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 29 0.27
47 57 0.54
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:79357861 original size:93 final size:93
Alignment explanation
Indices: 79357702--79357966 Score: 467
Period size: 93 Copynumber: 2.8 Consensus size: 93
79357692 GGATGGTTGA
* *
79357702 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTAAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
79357767 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
79357795 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
79357860 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * * *
79357888 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGCCCGAGCTTGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
*
79357953 TGAGCCCGAGTTCG
66 TGAGTCCGAGTTCG
79357967 CTTATGGGCG
Statistics
Matches: 165, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 165 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:79362230 original size:52 final size:53
Alignment explanation
Indices: 79362143--79362287 Score: 204
Period size: 52 Copynumber: 2.7 Consensus size: 53
79362133 CTTACACGGT
* *
79362143 TCACATATCATACCGAAGCCATATCCCAGAC-ATGGTCTTATACGGAATCACATTA
1 TCACAT-T-ATACCGATGCCATAGCCCAG-CTATGGTCTTATACGGAATCACATTA
*
79362198 TCACATTATACCGATG-CATAGCCCAGCTATGGTCTTATACGGAGTCACATTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
**
79362250 TCACATTGCACCGATGCCATAGCCCAGCTATGGTCTTA
1 TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTA
79362288 AACGTGCGCA
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
51 1 0.01
52 46 0.55
53 29 0.35
54 1 0.01
55 6 0.07
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.27
Consensus pattern (53 bp):
TCACATTATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACATTA
Found at i:79362303 original size:52 final size:52
Alignment explanation
Indices: 79362174--79362307 Score: 182
Period size: 52 Copynumber: 2.6 Consensus size: 52
79362164 TATCCCAGAC
* * *
79362174 ATGGTCTTATACGGAATCACATTATCACATTATACCGATGCATAGCCCAGCT
1 ATGGTCTTAAACGGAGTCACATTATCACATTACACCGATGCATAGCCCAGCT
* *
79362226 ATGGTCTTATACGGAGTCACATTATCACATTGCACCGATGCCATAGCCCAGCT
1 ATGGTCTTAAACGGAGTCACATTATCACATTACACCGATG-CATAGCCCAGCT
*
79362279 ATGGTCTTAAACGTGCG-CAC-TTATCACAT
1 ATGGTCTTAAACG-GAGTCACATTATCACAT
79362308 ATTTTTCGTC
Statistics
Matches: 75, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
52 46 0.61
53 27 0.36
54 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (52 bp):
ATGGTCTTAAACGGAGTCACATTATCACATTACACCGATGCATAGCCCAGCT
Found at i:79365440 original size:18 final size:18
Alignment explanation
Indices: 79365417--79365453 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
79365407 GAATTAATTT
79365417 TTAAAAATTTTAATTTAA
1 TTAAAAATTTTAATTTAA
79365435 TTAAAAATTTTAATTTAA
1 TTAAAAATTTTAATTTAA
79365453 T
1 T
79365454 CGATTCAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAAAAATTTTAATTTAA
Found at i:79365941 original size:29 final size:30
Alignment explanation
Indices: 79365883--79365942 Score: 70
Period size: 29 Copynumber: 2.0 Consensus size: 30
79365873 TTTTGGACTG
* *
79365883 AAATATTTAAATAAAAAAACTTAATTTTAA
1 AAATATTTAAATAAAAAAACTAAATATTAA
*
79365913 AAAT-TTTAAATACATAAAA-TAAATATTAA
1 AAATATTTAAATA-AAAAAACTAAATATTAA
79365942 A
1 A
79365943 TTTTATCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (30 bp):
AAATATTTAAATAAAAAAACTAAATATTAA
Found at i:79366366 original size:20 final size:21
Alignment explanation
Indices: 79366341--79366380 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79366331 TGCTCCACCT
79366341 GCAAGG-AGA-GCAACAAACAC
1 GCAAGGCAGAGGCAA-AAACAC
79366361 GCAAGGCAGAGGCAAAAACA
1 GCAAGGCAGAGGCAAAAACA
79366381 AAAAATAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.50, C:0.23, G:0.28, T:0.00
Consensus pattern (21 bp):
GCAAGGCAGAGGCAAAAACAC
Found at i:79366608 original size:7 final size:7
Alignment explanation
Indices: 79366596--79366628 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
79366586 TATTTTCTTC
79366596 TATTTTT
1 TATTTTT
79366603 TATTTTT
1 TATTTTT
79366610 TATTTTT
1 TATTTTT
*
79366617 T-TTGTT
1 TATTTTT
79366623 TATTTT
1 TATTTT
79366629 CTACAACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.85
Consensus pattern (7 bp):
TATTTTT
Found at i:79372662 original size:63 final size:63
Alignment explanation
Indices: 79372563--79372689 Score: 254
Period size: 63 Copynumber: 2.0 Consensus size: 63
79372553 ATTTGGTAGA
79372563 TAGCTTCATTTATGAACATGTCAGTTGATTTGTAAATACCTTTTCTAGCTTGTCAATATCTCG
1 TAGCTTCATTTATGAACATGTCAGTTGATTTGTAAATACCTTTTCTAGCTTGTCAATATCTCG
79372626 TAGCTTCATTTATGAACATGTCAGTTGATTTGTAAATACCTTTTCTAGCTTGTCAATATCTCG
1 TAGCTTCATTTATGAACATGTCAGTTGATTTGTAAATACCTTTTCTAGCTTGTCAATATCTCG
79372689 T
1 T
79372690 GGATCCGATA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 64 1.00
ACGTcount: A:0.25, C:0.17, G:0.14, T:0.43
Consensus pattern (63 bp):
TAGCTTCATTTATGAACATGTCAGTTGATTTGTAAATACCTTTTCTAGCTTGTCAATATCTCG
Found at i:79378127 original size:13 final size:13
Alignment explanation
Indices: 79378106--79378180 Score: 58
Period size: 13 Copynumber: 6.2 Consensus size: 13
79378096 AATTTATAAA
*
79378106 ATTATAAATATAT
1 ATTAAAAATATAT
79378119 ATTAAAAATATAT
1 ATTAAAAATATAT
79378132 -TATAAAAAT-T-T
1 AT-TAAAAATATAT
79378143 A-T--AAATA-A-
1 ATTAAAAATATAT
79378151 ATTAAAAATATAT
1 ATTAAAAATATAT
*
79378164 ATTATAAAAAATAT
1 ATTA-AAAATATAT
79378178 ATT
1 ATT
79378181 TTAATGGCTT
Statistics
Matches: 50, Mismatches: 2, Indels: 19
0.70 0.03 0.27
Matches are distributed among these distances:
8 5 0.10
9 1 0.02
10 1 0.02
11 6 0.12
12 3 0.06
13 23 0.46
14 11 0.22
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATTAAAAATATAT
Found at i:79378129 original size:11 final size:11
Alignment explanation
Indices: 79378110--79378163 Score: 58
Period size: 11 Copynumber: 5.0 Consensus size: 11
79378100 TATAAAATTA
*
79378110 TAAATATATAT
1 TAAAAATATAT
79378121 TAAAAATATAT
1 TAAAAATATAT
79378132 TATAAAA-AT-T
1 TA-AAAATATAT
* *
79378142 TATAAATAAAT
1 TAAAAATATAT
79378153 TAAAAATATAT
1 TAAAAATATAT
79378164 ATTATAAAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
9 3 0.09
10 4 0.11
11 24 0.69
12 4 0.11
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (11 bp):
TAAAAATATAT
Found at i:79378145 original size:15 final size:15
Alignment explanation
Indices: 79378113--79378180 Score: 52
Period size: 14 Copynumber: 4.5 Consensus size: 15
79378103 AAAATTATAA
*
79378113 ATATA-TATTAAAA-
1 ATATATTATAAAAAT
79378126 ATATATTATAAAAATTT
1 ATATATTATAAAAA--T
* *
79378143 ATAAATAAATTAAAAAT
1 ATATAT-TA-TAAAAAT
79378160 ATATATTATAAAAA-
1 ATATATTATAAAAAT
79378174 ATATATT
1 ATATATT
79378181 TTAATGGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 11
0.73 0.08 0.18
Matches are distributed among these distances:
13 5 0.11
14 14 0.32
15 6 0.14
16 1 0.02
17 11 0.25
18 1 0.02
19 6 0.14
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATATATTATAAAAAT
Found at i:79378148 original size:34 final size:33
Alignment explanation
Indices: 79378099--79378178 Score: 103
Period size: 34 Copynumber: 2.4 Consensus size: 33
79378089 CCTTAGAAAT
79378099 TTAT-AAAATTATAAATATATATT-AAAA-ATATA
1 TTATAAAAATTATAAATA-A-ATTAAAAATATATA
79378131 TTATAAAAATTTATAAATAAATTAAAAATATATA
1 TTATAAAAA-TTATAAATAAATTAAAAATATATA
*
79378165 TTATAAAAAATATA
1 TTATAAAAATTATA
79378179 TTTTAATGGC
Statistics
Matches: 43, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
32 7 0.16
33 13 0.30
34 23 0.53
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (33 bp):
TTATAAAAATTATAAATAAATTAAAAATATATA
Found at i:79378226 original size:15 final size:15
Alignment explanation
Indices: 79378208--79378252 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
79378198 AAATATTTTT
79378208 AAAATTTATATTATA
1 AAAATTTATATTATA
*
79378223 AAAATATATATTATA
1 AAAATTTATATTATA
*
79378238 AATATTT-T-TTATA
1 AAAATTTATATTATA
79378251 AA
1 AA
79378253 TTTATATGTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
13 7 0.26
14 1 0.04
15 19 0.70
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAAATTTATATTATA
Found at i:79378240 original size:28 final size:28
Alignment explanation
Indices: 79378196--79378276 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 28
79378186 GGCTTACGTA
79378196 AAAAATAT-TTTTA-AAATTTATATTAT
1 AAAAATATATTTTATAAATTTATATTAT
* *
79378222 AAAAATATATATTATAAATATT-TTTTAT
1 AAAAATATATTTTATAAAT-TTATATTAT
**
79378250 AAATTTATATGTTCTATAAATTTATAT
1 AAAAATATAT-TT-TATAAATTTATAT
79378277 ATTATAGGCT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
26 8 0.19
27 4 0.09
28 17 0.40
29 5 0.12
30 9 0.21
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (28 bp):
AAAAATATATTTTATAAATTTATATTAT
Found at i:79378374 original size:16 final size:15
Alignment explanation
Indices: 79378355--79378393 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
79378345 TAGCAACTTA
*
79378355 AAAATTGATATATTAT
1 AAAATTAATATA-TAT
79378371 AAAATATAATATATAT
1 AAAAT-TAATATATAT
79378387 AAAATTA
1 AAAATTA
79378394 CTACAACCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 13 0.62
17 6 0.29
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (15 bp):
AAAATTAATATATAT
Found at i:79379788 original size:19 final size:20
Alignment explanation
Indices: 79379746--79379790 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
79379736 ATTATTATAG
* *
79379746 AATATAAAAATTATGGAAATT
1 AATA-AAAAATTATGAAAAAT
79379767 AATAAAAAATTAT-AAAAAT
1 AATAAAAAATTATGAAAAAT
79379786 AATAA
1 AATAA
79379791 TATAATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 9 0.41
20 9 0.41
21 4 0.18
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (20 bp):
AATAAAAAATTATGAAAAAT
Found at i:79379820 original size:18 final size:18
Alignment explanation
Indices: 79379797--79379832 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79379787 ATAATATAAT
*
79379797 TTATAAAGAACTTTAAAA
1 TTATAAAGAACATTAAAA
*
79379815 TTATAAAGCACATTAAAA
1 TTATAAAGAACATTAAAA
79379833 GTGGTGATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.31
Consensus pattern (18 bp):
TTATAAAGAACATTAAAA
Found at i:79383841 original size:27 final size:27
Alignment explanation
Indices: 79383803--79383855 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
79383793 TTTTTTAAAA
79383803 TTTTTAAAAAAATT-ATATTTTTTACC
1 TTTTTAAAAAAATTAATATTTTTTACC
*
79383829 TTTTATAATAAAATTGAATATTTTTTA
1 TTTT-TAAAAAAATT-AATATTTTTTA
79383856 GTATTTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 9 0.39
29 10 0.43
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (27 bp):
TTTTTAAAAAAATTAATATTTTTTACC
Found at i:79383866 original size:29 final size:27
Alignment explanation
Indices: 79383787--79383868 Score: 76
Period size: 27 Copynumber: 2.9 Consensus size: 27
79383777 CTTATAAATT
* *
79383787 TTATGATTTTTTAAAATTTTTAAAAAAA
1 TTAT-ATTTTTTAATATTTTTAATAAAA
* *
79383815 TTATATTTTTTACCT-TTTATAATAAAA
1 TTATATTTTTTA-ATATTTTTAATAAAA
*
79383842 TTGAATATTTTTTAGTATTTTTAATAA
1 TT--ATATTTTTTAATATTTTTAATAA
79383869 TTGTTTTAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
27 20 0.45
28 5 0.11
29 19 0.43
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (27 bp):
TTATATTTTTTAATATTTTTAATAAAA
Found at i:79383884 original size:22 final size:21
Alignment explanation
Indices: 79383858--79383905 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
79383848 ATTTTTTAGT
*
79383858 ATTTTTAATAATTGTTTTA-AA
1 ATTTTCAAT-ATTGTTTTATAA
*
79383879 AGTTTTCGATATTGTTTTATAA
1 A-TTTTCAATATTGTTTTATAA
79383901 ATTTT
1 ATTTT
79383906 ATTTTTTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 14 0.61
22 9 0.39
ACGTcount: A:0.31, C:0.02, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTTTCAATATTGTTTTATAA
Found at i:79383929 original size:15 final size:16
Alignment explanation
Indices: 79383911--79383940 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79383901 ATTTTATTTT
79383911 TTCTAT-TTTTATAAA
1 TTCTATATTTTATAAA
79383926 TTCTATATTTTATAA
1 TTCTATATTTTATAA
79383941 TAAATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (16 bp):
TTCTATATTTTATAAA
Found at i:79384107 original size:29 final size:29
Alignment explanation
Indices: 79384074--79384135 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
79384064 ATTTTCAATC
* *
79384074 TTTTATCATTTTTAATAATTTTATTGA-TA
1 TTTTATCAGTTTAAATAATTTTATT-ATTA
* *
79384103 TTTTATGAGTTTAAATATTTTTATTATTA
1 TTTTATCAGTTTAAATAATTTTATTATTA
79384132 TTTT
1 TTTT
79384136 CCCCTATATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 1 0.04
29 27 0.96
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (29 bp):
TTTTATCAGTTTAAATAATTTTATTATTA
Found at i:79388423 original size:22 final size:23
Alignment explanation
Indices: 79388384--79388430 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
79388374 GGAAAGAAGT
*
79388384 TTTTTTAGTAAATAAAAATTATG
1 TTTTTAAGTAAATAAAAATTATG
79388407 TTTTTAAGTAAATAAAAATTATG
1 TTTTTAAGTAAATAAAAATTATG
79388430 T
1 T
79388431 ATTGCCATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.47
Consensus pattern (23 bp):
TTTTTAAGTAAATAAAAATTATG
Done.