Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 254 of 259
Found at i:79778824 original size:14 final size:14
Alignment explanation
Indices: 79778805--79778835 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
79778795 CCGGAACATG
79778805 ATACAAAAGAGTCC
1 ATACAAAAGAGTCC
79778819 ATACAAAAGAGTCC
1 ATACAAAAGAGTCC
79778833 ATA
1 ATA
79778836 TCACAGTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.52, C:0.19, G:0.13, T:0.16
Consensus pattern (14 bp):
ATACAAAAGAGTCC
Found at i:79778960 original size:4 final size:4
Alignment explanation
Indices: 79778951--79778995 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
79778941 TATCTAGTGG
79778951 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA T
79778996 ATTCAAGTGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:79782288 original size:3 final size:3
Alignment explanation
Indices: 79782280--79782313 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
79782270 ATCTATATAG
79782280 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
79782314 CCTAATATAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:79782801 original size:18 final size:19
Alignment explanation
Indices: 79782778--79782820 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
79782768 ATATATTCTC
79782778 ATTATTATCATT-ACTTTT
1 ATTATTATCATTAACTTTT
* *
79782796 ATTATTATTATTAATTTTT
1 ATTATTATCATTAACTTTT
79782815 ATTATT
1 ATTATT
79782821 TGACGTATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (19 bp):
ATTATTATCATTAACTTTT
Found at i:79782934 original size:24 final size:23
Alignment explanation
Indices: 79782890--79782946 Score: 55
Period size: 24 Copynumber: 2.5 Consensus size: 23
79782880 TTTTACTTAT
* *
79782890 TTTCTTATTACTTAGTTATTTACG
1 TTTCTTATTACTCAGTAATTT-CG
79782914 TTTCTTATTCACTCA-TAATTTCG
1 TTTCTTATT-ACTCAGTAATTTCG
*
79782937 -TTATTATTAC
1 TTTCTTATTAC
79782947 GTATAAGCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 7 0.24
23 2 0.07
24 14 0.48
25 4 0.14
ACGTcount: A:0.23, C:0.16, G:0.05, T:0.56
Consensus pattern (23 bp):
TTTCTTATTACTCAGTAATTTCG
Found at i:79784676 original size:33 final size:33
Alignment explanation
Indices: 79784634--79784700 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
79784624 AAATAATATG
79784634 TCTAAAGGTTATTGCATCCATCACAAAAGAATA
1 TCTAAAGGTTATTGCATCCATCACAAAAGAATA
*
79784667 TCTAAAGGTTATTGTATCCATCACAAAAGAATA
1 TCTAAAGGTTATTGCATCCATCACAAAAGAATA
79784700 T
1 T
79784701 TATATCTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (33 bp):
TCTAAAGGTTATTGCATCCATCACAAAAGAATA
Found at i:79785296 original size:25 final size:25
Alignment explanation
Indices: 79785262--79785323 Score: 108
Period size: 25 Copynumber: 2.5 Consensus size: 25
79785252 GGTTATTCTT
*
79785262 ATTAAGTTTGTAAATACATCTAACA
1 ATTAACTTTGTAAATACATCTAACA
79785287 ATTAACTTTGTAAATACATCTAACA
1 ATTAACTTTGTAAATACATCTAACA
79785312 ATTAAC-TTGTAA
1 ATTAACTTTGTAA
79785324 TGATTTATCT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 6 0.17
25 30 0.83
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (25 bp):
ATTAACTTTGTAAATACATCTAACA
Found at i:79790442 original size:29 final size:30
Alignment explanation
Indices: 79790396--79790457 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
79790386 TGGGACAAAA
*
79790396 TTGATTTAATGTGTAATTTTATACATGAAAT
1 TTGATTT-ATGTGCAATTTTATACATGAAAT
*
79790427 TTGATTT-TGTGCAATTTTATATATGAAAT
1 TTGATTTATGTGCAATTTTATACATGAAAT
79790456 TT
1 TT
79790458 TAATTTGATC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 22 0.76
31 7 0.24
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (30 bp):
TTGATTTATGTGCAATTTTATACATGAAAT
Found at i:79790464 original size:29 final size:29
Alignment explanation
Indices: 79790405--79790464 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
79790395 ATTGATTTAA
* *
79790405 TGTGTAATTTTATACATGAAATTTGATTT
1 TGTGCAATTTTATACATGAAATTTGAATT
* *
79790434 TGTGCAATTTTATATATGAAATTTTAATT
1 TGTGCAATTTTATACATGAAATTTGAATT
79790463 TG
1 TG
79790465 ATCTAATTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.03, G:0.13, T:0.52
Consensus pattern (29 bp):
TGTGCAATTTTATACATGAAATTTGAATT
Found at i:79793532 original size:23 final size:24
Alignment explanation
Indices: 79793506--79793550 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
79793496 TAGGAATACC
*
79793506 TCATCTAA-ATATT-TTAGTATTTA
1 TCATATAACATATTGTTA-TATTTA
79793529 TCATATAACATATTGTTATATT
1 TCATATAACATATTGTTATATT
79793551 ATTCTATCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 7 0.37
24 9 0.47
25 3 0.16
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.51
Consensus pattern (24 bp):
TCATATAACATATTGTTATATTTA
Found at i:79795760 original size:46 final size:46
Alignment explanation
Indices: 79795708--79795883 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
79795698 TGGTTGAGCA
*
79795708 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * * *
79795754 TTCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--AATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
79795801 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
79795847 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79795884 GTAGGTTACA
Statistics
Matches: 103, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
45 3 0.03
46 63 0.61
47 25 0.24
48 3 0.03
50 4 0.04
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:79795864 original size:93 final size:93
Alignment explanation
Indices: 79795705--79795875 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
79795695 GGATGGTTGA
* **
79795705 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
79795770 TGAGTTCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
79795798 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
79795863 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
79795876 ACTTATGGGT
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:79802503 original size:73 final size:73
Alignment explanation
Indices: 79802384--79802529 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
79802374 TCATTGATGG
79802384 ATTTGCAGCCCACATGAGGCAGGACACTTGAAATCTGACATGTGCTTTAATTGAGTTAATGTGAG
1 ATTTGCAGCCCACATGAGGCAGGACACTTGAAATCTGACATGTGCTTTAATTGAGTTAATGTGAG
79802449 GTTGGTGA
66 GTTGGTGA
79802457 ATTTGCAGCCCACATGAGGCAGGACACTTGAAATCTGACATGTGCTTTAATTGAGTTAATGTGAG
1 ATTTGCAGCCCACATGAGGCAGGACACTTGAAATCTGACATGTGCTTTAATTGAGTTAATGTGAG
79802522 GTTGGTGA
66 GTTGGTGA
79802530 GGGTGGGATA
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (73 bp):
ATTTGCAGCCCACATGAGGCAGGACACTTGAAATCTGACATGTGCTTTAATTGAGTTAATGTGAG
GTTGGTGA
Found at i:79804814 original size:20 final size:20
Alignment explanation
Indices: 79804791--79804838 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
79804781 AAATCCAAAT
79804791 TAAAATATTAAAATTCAGGA
1 TAAAATATTAAAATTCAGGA
* * *
79804811 TAAAATCTTGAAATTTAGGA
1 TAAAATATTAAAATTCAGGA
79804831 TAAGAATA
1 TAA-AATA
79804839 CTGATGTGGC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.52, C:0.04, G:0.12, T:0.31
Consensus pattern (20 bp):
TAAAATATTAAAATTCAGGA
Found at i:79805070 original size:23 final size:23
Alignment explanation
Indices: 79805044--79805089 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
79805034 TTAATTGTAT
79805044 AAATTATTAAAAAATTCATAAAA
1 AAATTATTAAAAAATTCATAAAA
* * *
79805067 AAATTATTAGAAATTTTATAAAA
1 AAATTATTAAAAAATTCATAAAA
79805090 CCCTATTCCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
AAATTATTAAAAAATTCATAAAA
Found at i:79811988 original size:44 final size:45
Alignment explanation
Indices: 79811819--79812219 Score: 166
Period size: 44 Copynumber: 9.1 Consensus size: 45
79811809 TTTTCAATCC
* * * *
79811819 ACTTC-CTACCAATATAGGAAG-GCAGGATCTGCTATCTTTGATCT
1 ACTTCACTACCAATATAGGAAGACCA-GACCTGTTATCTTGGATCT
* * * * ** ** * *
79811863 ATTTCAC-ACCAATATATGAATACGAGATTTACTCTCTTCGATCT
1 ACTTCACTACCAATATAGGAAGACCAGACCTGTTATCTTGGATCT
* * * * * * * *
79811907 ACTTCTCCACCAGTATGGGAAGACAAGATCTG-CATCTTGGATCC
1 ACTTCACTACCAATATAGGAAGACCAGACCTGTTATCTTGGATCT
* *** *
79811951 ACTTC-CTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCT
1 ACTTCACTACCAATATAGGAAGACCAGACCTGTTATCTTGGATCT
* * * *
79811995 ACTTCAC-GCCAATACATGAAGACCAGATCTGCTT-TC-TGCGATCT
1 ACTTCACTACCAATATAGGAAGACCAGACCTG-TTATCTTG-GATCT
* * * * *
79812039 ACTTCGCCACCAATATGGGAAGACCAGATCTG-CATCTTGGATCT
1 ACTTCACTACCAATATAGGAAGACCAGACCTGTTATCTTGGATCT
* *** *
79812083 ACTTC-CTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCT
1 ACTTCACTACCAATATAGGAAGACCAGACCTGTTATCTTGGATCT
* * * * *
79812127 ACTTCAC-GCTAATACATGAAGACAAGATCC-GCTT-TC-TGCGATCT
1 ACTTCACTACCAATATAGGAAGACCAGA-CCTG-TTATCTTG-GATCT
* * * * * * *
79812171 ACTTCGCCACCAATATGGGAAGACAAGATCTG-CATCTTGGATCC
1 ACTTCACTACCAATATAGGAAGACCAGACCTGTTATCTTGGATCT
79812215 ACTTC
1 ACTTC
79812220 CTATCTATTG
Statistics
Matches: 263, Mismatches: 75, Indels: 38
0.70 0.20 0.10
Matches are distributed among these distances:
43 39 0.15
44 157 0.60
45 67 0.25
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (45 bp):
ACTTCACTACCAATATAGGAAGACCAGACCTGTTATCTTGGATCT
Found at i:79812007 original size:132 final size:132
Alignment explanation
Indices: 79811815--79812224 Score: 613
Period size: 132 Copynumber: 3.1 Consensus size: 132
79811805 CTGTTTTTCA
* *** * * * * * *
79811815 ATCCACTTCCTACCAATATAGGAAGGCAGGATCTGCTATCTTTGATCTATTTCACACCAATATAT
1 ATCCACTTCCTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
* * * * * * * *
79811880 GAATACGAGATTTACTCTCTTCGATCTACTTCTCCACCAGTATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
79811945 GG
131 GG
79811947 ATCCACTTCCTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
1 ATCCACTTCCTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
* *
79812012 GAAGACCAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACCAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
79812077 GG
131 GG
* *
79812079 ATCTACTTCCTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCTACTTCACGCTAATACAT
1 ATCCACTTCCTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
*
79812144 GAAGACAAGATCCGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
66 GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
79812209 GG
131 GG
79812211 ATCCACTTCCTATC
1 ATCCACTTCCTATC
79812225 TATTGACACC
Statistics
Matches: 253, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 253 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.30
Consensus pattern (132 bp):
ATCCACTTCCTATCAATATAGGAAGATGGGACCTGTTATCTTCGATCTACTTCACGCCAATACAT
GAAGACAAGATCTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCATCTT
GG
Found at i:79813078 original size:4 final size:5
Alignment explanation
Indices: 79813051--79813079 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
79813041 GTGAAACAAT
79813051 ATAAA ATAAA ATAAA ATAAA AT-AA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
79813080 GCACTTATGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
ATAAA
Found at i:79813518 original size:26 final size:25
Alignment explanation
Indices: 79813489--79813553 Score: 64
Period size: 26 Copynumber: 2.6 Consensus size: 25
79813479 AAAAATAAGT
79813489 GTATATGTATATATATAGTACAAAAA
1 GTATATGTATATATATA-TACAAAAA
*
79813515 GTATGCATGTA-A-ATATATAGAAAAA
1 GTAT--ATGTATATATATATACAAAAA
*
79813540 -TATATTTATATATA
1 GTATATGTATATATA
79813554 AAAGAAATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 10
0.73 0.04 0.22
Matches are distributed among these distances:
22 4 0.12
23 1 0.03
24 6 0.18
25 7 0.21
26 9 0.27
27 1 0.03
28 5 0.15
ACGTcount: A:0.49, C:0.03, G:0.11, T:0.37
Consensus pattern (25 bp):
GTATATGTATATATATATACAAAAA
Found at i:79814604 original size:20 final size:20
Alignment explanation
Indices: 79814568--79814607 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
79814558 TCCTATTGTT
79814568 GTTTTGTTACTGTTTGCTGC
1 GTTTTGTTACTGTTTGCTGC
*
79814588 GTTTCTGTTTCTG-TTGCTGC
1 GTTT-TGTTACTGTTTGCTGC
79814608 TTCCGTCATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.03, C:0.17, G:0.25, T:0.55
Consensus pattern (20 bp):
GTTTTGTTACTGTTTGCTGC
Found at i:79814916 original size:44 final size:44
Alignment explanation
Indices: 79814868--79815181 Score: 353
Period size: 44 Copynumber: 7.1 Consensus size: 44
79814858 AAGATAGGAC
79814868 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGAT
* *
79814912 CTGCTATATTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGAT
*
79814956 CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGAT
* * * ***
79815000 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTC-ACACCAATACATGAAGACAAGAT
* * * * * * * *
79815045 CTGC-ATCTTGGATCCACTTC-CTATCAATATAGGAAGATAGGAC
1 CTGCTATCTTCGATCTACTTCAC-ACCAATACATGAAGACAAGAT
* *
79815088 CTGCTATCTTCGATTTACTTCACGCCAATACATGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGAT
* ** * ***
79815132 CTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
1 CTGCTATCTTCGATCTACTTC-ACACCAATACATGAAGACAAGAT
79815177 CTGCT
1 CTGCT
79815182 TTAATGACTT
Statistics
Matches: 227, Mismatches: 38, Indels: 9
0.83 0.14 0.03
Matches are distributed among these distances:
42 1 0.00
43 20 0.09
44 160 0.70
45 46 0.20
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
CTGCTATCTTCGATCTACTTCACACCAATACATGAAGACAAGAT
Found at i:79815092 original size:132 final size:133
Alignment explanation
Indices: 79814868--79815181 Score: 436
Period size: 132 Copynumber: 2.4 Consensus size: 133
79814858 AAGATAGGAC
* * * *** *
79814868 CTGCTATCTTCGATCTACTTC-ACACCAATACATGAAGACAAGATCTGCTATATTCGATCTACTT
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCTATATTCGATCCACTT
* * *
79814932 CACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAA
66 CACACCAATACAGGAAGACAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAA
79814997 GAT
131 GAT
* *
79815000 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTGGATCCACTT
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCTATATTCGATCCACTT
* * * * *
79815064 C-CTATCAATATAGGAAGATAGGACCTGCTATCTTCGATTTACTTCACGCCAATACATGAAGACA
66 CAC-ACCAATACAGGAAGACAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACA
79815128 AGAT
130 AGAT
*
79815132 CTGCTTTCAGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCT
1 CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCT
79815182 TTAATGACTT
Statistics
Matches: 161, Mismatches: 18, Indels: 5
0.88 0.10 0.03
Matches are distributed among these distances:
131 1 0.01
132 137 0.85
133 23 0.14
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (133 bp):
CTGCTTTCTGCGATCTACTTCGCCACCAATATGGGAAGACAAGATCTGCTATATTCGATCCACTT
CACACCAATACAGGAAGACAAGACCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAA
GAT
Found at i:79831382 original size:17 final size:17
Alignment explanation
Indices: 79831360--79831402 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
79831350 ATAATTTACT
79831360 TTTTAAAATTTTATGAA
1 TTTTAAAATTTTATGAA
*
79831377 TTTTAATAA-TTTATTAA
1 TTTTAA-AATTTTATGAA
79831394 -TTTAAAATT
1 TTTTAAAATT
79831403 AAACTAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 2 0.09
16 6 0.26
17 13 0.57
18 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TTTTAAAATTTTATGAA
Found at i:79837044 original size:69 final size:69
Alignment explanation
Indices: 79836964--79837103 Score: 244
Period size: 69 Copynumber: 2.0 Consensus size: 69
79836954 GGGCATCCCT
* * *
79836964 TTCATTCATACTTTTCTACTAGCTTTTGATTGGCCTTCCCCAGATCAACAAGTTTGCACCATTAA
1 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
79837029 TGTC
66 TGTC
*
79837033 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCTTTCCCCAGATCAAAAAGTTTGCACCATTAA
1 TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
79837098 TGTC
66 TGTC
79837102 TT
1 TT
79837104 ATTCACATTG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (69 bp):
TTCATTAATACTTTTCTACTAGCTTGTGATTGGCCTTCCCCAGATCAAAAAGTTTGCACCATTAA
TGTC
Found at i:79842245 original size:59 final size:58
Alignment explanation
Indices: 79842065--79842348 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
79842055 ATGATAAATT
* ** * *
79842065 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
79842124 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
79842185 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
79842244 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
79842306 T
58 C
*
79842307 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
79842349 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:79842272 original size:120 final size:122
Alignment explanation
Indices: 79842058--79842348 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
79842048 TAGTATGATG
* **
79842058 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
79842123 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
79842179 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
79842242 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
79842300 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
79842349 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:79842327 original size:18 final size:19
Alignment explanation
Indices: 79842292--79842328 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
79842282 ATTATTAAGA
79842292 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
79842311 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
79842329 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:79842558 original size:44 final size:45
Alignment explanation
Indices: 79842470--79842583 Score: 114
Period size: 45 Copynumber: 2.6 Consensus size: 45
79842460 AGTTTTTTCC
79842470 ATTATGCTATTACACCTCT-ATCC----CATTCAACCAAACACAAG
1 ATTA-GCTATTACACCTCTAATCCAATACATTCAACCAAACACAAG
* * * ***
79842511 ATTA-CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTGG
1 ATTAGCTATTACACCTCTAATCCAATACATTCAACCAAACACAAG
*
79842555 ATTAGCTATTATACCTCTAATCCAATACA
1 ATTAGCTATTACACCTCTAATCCAATACA
79842584 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
39 12 0.21
40 3 0.05
41 4 0.07
44 19 0.33
45 20 0.34
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.31
Consensus pattern (45 bp):
ATTAGCTATTACACCTCTAATCCAATACATTCAACCAAACACAAG
Found at i:79842598 original size:17 final size:16
Alignment explanation
Indices: 79842567--79842616 Score: 91
Period size: 16 Copynumber: 3.1 Consensus size: 16
79842557 TAGCTATTAT
79842567 ACCTCTAATCCAATAC
1 ACCTCTAATCCAATAC
79842583 ACCTCTAATCCCAATAC
1 ACCTCTAAT-CCAATAC
79842600 ACCTCTAATCCAATAC
1 ACCTCTAATCCAATAC
79842616 A
1 A
79842617 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
16 17 0.52
17 16 0.48
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.24
Consensus pattern (16 bp):
ACCTCTAATCCAATAC
Found at i:79843876 original size:22 final size:23
Alignment explanation
Indices: 79843838--79843881 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
79843828 ATAATTTGTT
*
79843838 ATTATTTTGTATAATGTGAATTA
1 ATTAGTTTGTATAATGTGAATTA
79843861 ATTAGTTTG-ATAATGTGAATT
1 ATTAGTTTGTATAATGTGAATT
79843882 TGTCATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (23 bp):
ATTAGTTTGTATAATGTGAATTA
Found at i:79849009 original size:3 final size:3
Alignment explanation
Indices: 79848978--79849057 Score: 81
Period size: 3 Copynumber: 26.3 Consensus size: 3
79848968 ATACGCGTAC
* *
79848978 ATA ATA AAA ATA TATA CTA ATA CATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
79849025 GTA ATA CTA ATA ATA CTA ATA AT- ATA AAA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
79849058 CAAGGATATT
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
2 2 0.03
3 54 0.87
4 6 0.10
ACGTcount: A:0.62, C:0.05, G:0.01, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:79849538 original size:11 final size:12
Alignment explanation
Indices: 79849522--79849558 Score: 60
Period size: 11 Copynumber: 3.2 Consensus size: 12
79849512 AGGAAAAAAA
79849522 GGAAGAGAG-AG
1 GGAAGAGAGAAG
79849533 GGAAGAGAGAAG
1 GGAAGAGAGAAG
79849545 GG-AGAGAGAAG
1 GGAAGAGAGAAG
79849556 GGA
1 GGA
79849559 GGGGGGAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 20 0.83
12 4 0.17
ACGTcount: A:0.46, C:0.00, G:0.54, T:0.00
Consensus pattern (12 bp):
GGAAGAGAGAAG
Found at i:79849687 original size:17 final size:17
Alignment explanation
Indices: 79849665--79849702 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
79849655 AGGTAAAAAA
* *
79849665 TTTATTTTTTTTTATTT
1 TTTATTTTCTTGTATTT
79849682 TTTA-TTTCTTGTATTT
1 TTTATTTTCTTGTATTT
79849698 TTTAT
1 TTTAT
79849703 ATATATATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (17 bp):
TTTATTTTCTTGTATTT
Found at i:79855179 original size:4 final size:4
Alignment explanation
Indices: 79855170--79855195 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
79855160 TAATCCTTAT
79855170 ATTA ATTA ATTA ATTA ATTA ATTA AT
1 ATTA ATTA ATTA ATTA ATTA ATTA AT
79855196 CTTTTATTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:79857117 original size:16 final size:16
Alignment explanation
Indices: 79857098--79857159 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
79857088 AAATAATAGA
79857098 ATTTAATTAAAATATT
1 ATTTAATTAAAATATT
*
79857114 ATTTCATTAAAATATTT
1 ATTTAATTAAAATA-TT
* * *
79857131 AATAAATGAAAATAATT
1 ATTTAATTAAAAT-ATT
79857148 -TTTAA-TAAAATA
1 ATTTAATTAAAATA
79857160 AAATTATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 6
0.72 0.16 0.12
Matches are distributed among these distances:
14 1 0.03
15 5 0.14
16 16 0.44
17 13 0.36
18 1 0.03
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (16 bp):
ATTTAATTAAAATATT
Found at i:79863074 original size:22 final size:22
Alignment explanation
Indices: 79863027--79863068 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
79863017 TTATTTGGTC
79863027 ATTTTTAGTCTCTATACTTTCA
1 ATTTTTAGTCTCTATACTTTCA
79863049 ATTTTTAGTCTCTATACTTT
1 ATTTTTAGTCTCTATACTTT
79863069 TTATTTGGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.17, G:0.05, T:0.57
Consensus pattern (22 bp):
ATTTTTAGTCTCTATACTTTCA
Found at i:79866868 original size:6 final size:6
Alignment explanation
Indices: 79866857--79866885 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
79866847 ACACAAACGG
79866857 AATTAT AATTAT AATTAT AATTAT AATTA
1 AATTAT AATTAT AATTAT AATTAT AATTA
79866886 ATACATTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
AATTAT
Found at i:79867993 original size:30 final size:29
Alignment explanation
Indices: 79867957--79868021 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 29
79867947 TGGTAAATTA
79867957 AAAAATTAAGTATT-AAAAATATAAGTTAT
1 AAAAATTAAGTATTAAAAAAT-TAAGTTAT
*
79867986 GAAAAATTAATTATTAAAAAATTAAGTTAT
1 -AAAAATTAAGTATTAAAAAATTAAGTTAT
79868016 AAAAAT
1 AAAAAT
79868022 AAAATAGATT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
29 6 0.18
30 21 0.64
31 6 0.18
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (29 bp):
AAAAATTAAGTATTAAAAAATTAAGTTAT
Found at i:79868018 original size:15 final size:15
Alignment explanation
Indices: 79867955--79868020 Score: 82
Period size: 15 Copynumber: 4.4 Consensus size: 15
79867945 TTTGGTAAAT
79867955 TAAAAAATTAAG-TA
1 TAAAAAATTAAGTTA
*
79867969 TTAAAAATATAAGTTA
1 TAAAAAAT-TAAGTTA
*
79867985 TGAAAAATTAA-TTA
1 TAAAAAATTAAGTTA
79867999 TTAAAAAATTAAGTTA
1 -TAAAAAATTAAGTTA
79868015 TAAAAA
1 TAAAAA
79868021 TAAAATAGAT
Statistics
Matches: 45, Mismatches: 3, Indels: 7
0.82 0.05 0.13
Matches are distributed among these distances:
14 10 0.22
15 23 0.51
16 12 0.27
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (15 bp):
TAAAAAATTAAGTTA
Found at i:79869619 original size:2 final size:2
Alignment explanation
Indices: 79869612--79869640 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
79869602 CTTTCAGGAC
79869612 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
79869641 TACACCAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:79877776 original size:3 final size:3
Alignment explanation
Indices: 79877740--79877934 Score: 77
Period size: 3 Copynumber: 63.0 Consensus size: 3
79877730 TATATCTTTA
* *
79877740 TAT TAT ATAT TAT AAT TAT T-T TAT TA- TACA TAT TAT TAT TAT TATT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TA-T
* * * * * *
79877786 TAT TGT ATAT TTT TTT TACA AAT TAT TAT TAT T-T TA- CAT TAT TATT
1 TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TA-T
79877832 TAT ATAT TAT TA- TAT TAT GTAT TAT T-T ATAT TATT TAT ATAT TAT
1 TAT -TAT TAT TAT TAT TAT -TAT TAT TAT -TAT TA-T TAT -TAT TAT
* * *
79877877 ATAT TAT TTT TACA TAT ATAT T-T TCA- TAT TAT ATAT TAT AAT TAT
1 -TAT TAT TAT TA-T TAT -TAT TAT T-AT TAT TAT -TAT TAT TAT TAT
79877922 T-T TA- TAT TAT TAT
1 TAT TAT TAT TAT TAT
79877935 GTCATCTTTT
Statistics
Matches: 147, Mismatches: 19, Indels: 52
0.67 0.09 0.24
Matches are distributed among these distances:
2 17 0.12
3 92 0.63
4 38 0.26
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:79877783 original size:39 final size:38
Alignment explanation
Indices: 79877740--79877898 Score: 111
Period size: 36 Copynumber: 4.3 Consensus size: 38
79877730 TATATCTTTA
79877740 TATTATATATTATAATTATTTTATTATACATATTATTAT
1 TATTATATATTAT-ATTATTTTATTATACATATTATTAT
* * * *
79877779 TATTATTTATTGTA-TATTTT-TTTTACAAATTATTAT
1 TATTATATATTATATTATTTTATTATACATATTATTAT
* * * *
79877815 TATTTTACATTATTATT-TATATATTAT-TATATTATGTAT
1 TATTATATATTA-TATTAT-TTTATTATACATATTAT-TAT
* *
79877854 TATT-TATATTAT-TTA-TATATTAT--ATATTATTTT
1 TATTATATATTATATTATTTTATTATACATATTATTAT
*
79877887 TACATATATATT
1 TA-TTATATATT
79877899 TTCATATTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
33 4 0.04
34 8 0.08
35 14 0.14
36 24 0.25
37 10 0.10
38 16 0.16
39 21 0.22
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (38 bp):
TATTATATATTATATTATTTTATTATACATATTATTAT
Found at i:79877845 original size:104 final size:103
Alignment explanation
Indices: 79877724--79877934 Score: 250
Period size: 104 Copynumber: 2.0 Consensus size: 103
79877714 TATCACATAA
*
79877724 TATTTATATATCTTTATATTATATATTATAATTATTTTATTATACATATTAT-TATTATTATTTA
1 TATTTATATATCTTTATATTATATATTAT--TTATATTATT-TACATATTATATATTATT-TTTA
* * * *
79877788 -TTGTATATTTT-TTTTACAAATTATTATTATTTTACATTAT
62 CATATATATTTTATATTACAAATTATAATTATTTTACATTAT
* *
79877828 TATTTATATAT-TATTATATTATGTATTATTTATATTATTTATATATTATATATTATTTTTACAT
1 TATTTATATATCT-TTATATTATATATTATTTATATTATTTACATATTATATATTATTTTTACAT
* * *
79877892 ATATATTTTCATATTATATATTATAATTATTTTATATTAT
65 ATATATTTT-ATATTACAAATTATAATTATTTTACATTAT
79877932 TAT
1 TAT
79877935 GTCATCTTTT
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
101 13 0.14
102 25 0.27
103 1 0.01
104 53 0.58
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (103 bp):
TATTTATATATCTTTATATTATATATTATTTATATTATTTACATATTATATATTATTTTTACATA
TATATTTTATATTACAAATTATAATTATTTTACATTAT
Found at i:79877848 original size:35 final size:34
Alignment explanation
Indices: 79877809--79877934 Score: 118
Period size: 35 Copynumber: 3.6 Consensus size: 34
79877799 TTTTACAAAT
79877809 TATTATTATTTTACATTATTATTTATATATTATTA
1 TATTATTATTTTACA-TATTATTTATATATTATTA
*
79877844 TATTATGTATTATT-TATATTATTTATATATTA-TA
1 TATTAT-TATT-TTACATATTATTTATATATTATTA
79877878 TATTA-T-TTTTACATATATATTT-TCATATTATATA
1 TATTATTATTTTACATAT-TATTTAT-ATATTAT-TA
* *
79877912 TTATAATTATTTTATATTATTAT
1 -TATTATTATTTTACA-TATTAT
79877935 GTCATCTTTT
Statistics
Matches: 76, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
30 2 0.03
31 7 0.09
32 12 0.16
34 9 0.12
35 26 0.34
36 6 0.08
37 11 0.14
38 3 0.04
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (34 bp):
TATTATTATTTTACATATTATTTATATATTATTA
Found at i:79877866 original size:27 final size:26
Alignment explanation
Indices: 79877740--79877934 Score: 98
Period size: 24 Copynumber: 7.7 Consensus size: 26
79877730 TATATCTTTA
*
79877740 TATTA-TATATTATAATTATTT-TAT
1 TATTATTATATTATTATTATTTATAT
79877764 TATACATATTATTATTATTATTTATTGTATAT
1 TAT---TATTA-TATTATTA-TTATT-TATAT
* * *
79877796 TTTTTTTACAAATTATTATTATTT-TA-
1 TATTATT--ATATTATTATTATTTATAT
*
79877822 CATTATTAT-TTATATATTA-TTATAT
1 TATTATTATATTAT-TATTATTTATAT
79877847 TATGTATTAT-TTA-TATTATTTATA-
1 TAT-TATTATATTATTATTATTTATAT
* **
79877871 TATTA-TATATTATTTTTACATATA-
1 TATTATTATATTATTATTATTTATAT
79877895 TATT-TTCATATTA-TA-TA-TTATAAT
1 TATTATT-ATATTATTATTATTTAT-AT
79877919 TATT-TTATATTATTAT
1 TATTATTATATTATTAT
79877935 GTCATCTTTT
Statistics
Matches: 134, Mismatches: 14, Indels: 45
0.69 0.07 0.23
Matches are distributed among these distances:
22 6 0.04
23 20 0.15
24 41 0.31
25 13 0.10
26 13 0.10
27 4 0.03
28 3 0.02
29 15 0.11
30 12 0.09
31 2 0.01
32 5 0.04
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (26 bp):
TATTATTATATTATTATTATTTATAT
Found at i:79877875 original size:59 final size:55
Alignment explanation
Indices: 79877823--79877934 Score: 129
Period size: 59 Copynumber: 2.0 Consensus size: 55
79877813 ATTATTTTAC
** *
79877823 ATTATTATTTATATATTATT-ATATTATGTATTATTTATATTATTTATATATTATATATT
1 ATTATTACATATATATT-TTCATATTATATATTA--TA-ATTATTTATATATTAT-TATT
*
79877882 ATTTTTACATATATATTTTCATATTATATATTATAATTATTT-TATATTATTAT
1 ATTATTACATATATATTTTCATATTATATATTATAATTATTTATATATTATTAT
79877935 GTCATCTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
54 3 0.06
55 8 0.17
56 7 0.15
57 2 0.04
58 2 0.04
59 26 0.54
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.62
Consensus pattern (55 bp):
ATTATTACATATATATTTTCATATTATATATTATAATTATTTATATATTATTATT
Found at i:79877899 original size:32 final size:34
Alignment explanation
Indices: 79877842--79877915 Score: 91
Period size: 32 Copynumber: 2.2 Consensus size: 34
79877832 TATATATTAT
**
79877842 TATATTATGTATTATTTATATTATTTATATATTA
1 TATATTATGTATTACATATATTATTTATATATTA
*
79877876 TATATTAT-TTTTACATATA-TATTT-TCATATTA
1 TATATTATGTATTACATATATTATTTAT-ATATTA
79877908 TATATTAT
1 TATATTAT
79877916 AATTATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 1 0.03
32 19 0.53
33 8 0.22
34 8 0.22
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (34 bp):
TATATTATGTATTACATATATTATTTATATATTA
Found at i:79877909 original size:39 final size:38
Alignment explanation
Indices: 79877728--79877924 Score: 143
Period size: 39 Copynumber: 4.9 Consensus size: 38
79877718 ACATAATATT
*
79877728 TATATATCTTTATATTATATATTATA-ATTA-TTTTATTA
1 TATATAT-TTTATATTATATATTATATATTATTTTTA-CA
* * * *
79877766 TACATATTATTATTATTATTTATTGTATATTTTTTTTACAAA
1 TATATATT-TTA-TATTATATATTATATATTATTTTTAC--A
* **
79877808 TTATTATTATTTTACATTAT-TATTTATATATTATTATATTATG
1 -TA-TA-TATTTTATATTATATA-TTATATATTATT-T-TTACA
79877851 TAT-TATTTATATTATTTATATATTATATATTATTTTTACA
1 TATATATTT-TA-TA-TTATATATTATATATTATTTTTACA
79877891 TATATATTTTCATATTATATATTATA-ATTATTTT
1 TATATATTTT-ATATTATATATTATATATTATTTT
79877925 ATATTATTAT
Statistics
Matches: 127, Mismatches: 14, Indels: 36
0.72 0.08 0.20
Matches are distributed among these distances:
37 1 0.01
38 17 0.13
39 29 0.23
40 14 0.11
41 14 0.11
42 21 0.17
43 19 0.15
44 5 0.04
45 7 0.06
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (38 bp):
TATATATTTTATATTATATATTATATATTATTTTTACA
Found at i:79878242 original size:15 final size:14
Alignment explanation
Indices: 79878215--79878261 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
79878205 CCATTATATT
79878215 TTATTTT-TTATAA
1 TTATTTTCTTATAA
79878228 TTATTATTCTTATAA
1 TTATT-TTCTTATAA
* *
79878243 ATATTTTTTTATATA
1 TTATTTTCTTATA-A
79878258 TTAT
1 TTAT
79878262 ACTATTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
13 5 0.18
14 9 0.32
15 14 0.50
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (14 bp):
TTATTTTCTTATAA
Found at i:79878270 original size:27 final size:29
Alignment explanation
Indices: 79878218--79878273 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 29
79878208 TTATATTTTA
*
79878218 TTTTTTATAATTATTATTCTTATAAATAT
1 TTTTTTATAATTATTATACTTATAAATAT
79878247 TTTTTTAT-A-TATTATAC-TATTAAATAT
1 TTTTTTATAATTATTATACTTA-TAAATAT
79878274 CACATTTTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 2 0.08
27 14 0.56
28 1 0.04
29 8 0.32
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (29 bp):
TTTTTTATAATTATTATACTTATAAATAT
Found at i:79882898 original size:21 final size:21
Alignment explanation
Indices: 79882872--79882912 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
79882862 ATCTACTCAA
* *
79882872 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
79882893 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
79882913 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:79893356 original size:18 final size:18
Alignment explanation
Indices: 79893333--79893425 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
79893323 CCCAACTACT
*
79893333 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
79893351 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
* *
79893369 GTATATGTGAATAGTACT
1 GTATACGTGAATAGTACC
*
79893387 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
79893405 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
79893423 GTA
1 GTA
79893426 AACGGTCGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:79893385 original size:36 final size:36
Alignment explanation
Indices: 79893333--79893425 Score: 159
Period size: 36 Copynumber: 2.6 Consensus size: 36
79893323 CCCAACTACT
*
79893333 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
* *
79893369 GTATATGTGAATAGTACTGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
79893405 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
79893426 AACGGTCGTA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 52 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:79896927 original size:117 final size:118
Alignment explanation
Indices: 79896656--79897446 Score: 1050
Period size: 117 Copynumber: 6.7 Consensus size: 118
79896646 GTCGTCTTCT
* * * * * *
79896656 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCC-T--TCGTCACTAGGTGGTTTCTCGCCGGCGAA
* *
79896721 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATG
63 TGGACTCTCTTCCTCAACG--TGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* ** *
79896779 CCTGCTAGTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * *
79896844 ACTCTCTTCCTCAACGT-CTTGTAGTAATCGTTCCTCACGGATGAGCTCAATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* * *
79896896 TCTTTTAATAATCTTTCTGGGGGATTATCTCCTTCATCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * * * *
79896961 ACTTTCTTCCTCGACGTCTGCTTGTAGTAACCGTTTTTCACCGACGACCTCAATG
66 ACTCTCTTCCTCAACG--TGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* * *
79897016 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
** *
79897081 ACTCTCTTCCTCAACGT-CTTGTAGTTTTCGTTTCTTACCGATGACCTCAATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
*
79897133 TCTTTTAGTAATCTTTCTGGAGGATTCTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
* * ** *
79897198 ACTTTCTTCCTCAACAT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCGATG
66 ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* *
79897250 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
** *
79897315 ACTCTCTTCCTCGACATC-TGCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATT
66 ACTCTCTTCCTC-A-A-CGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
* * * * *
79897370 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
*
79897435 ACTTTCTTCCTC
66 ACTCTCTTCCTC
79897447 GACATTCTCT
Statistics
Matches: 599, Mismatches: 62, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
117 316 0.53
118 3 0.01
119 3 0.01
120 251 0.42
122 1 0.00
123 25 0.04
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.37
Consensus pattern (118 bp):
TCTTTTAGTAATCTTTCTGGAGGATTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
ACTCTCTTCCTCAACGTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATG
Found at i:79897132 original size:237 final size:237
Alignment explanation
Indices: 79896656--79897449 Score: 1146
Period size: 237 Copynumber: 3.3 Consensus size: 237
79896646 GTCGTCTTCT
* * * * *
79896656 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCC-T--TCGTCACTAGGTGGTTTCTCACCGGCGAA
* * * **
79896721 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
63 TGGACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTA
* *
79896786 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
128 GTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
** * * *
79896851 TCCTCAACGTCTTGTAGTAATCGTTCCTCACGGATGAGCTCAATG
193 TCCTCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* * *
79896896 TCTTTTAATAATCTTTCTGGGGGATTATCTCCTTCATCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
* * *
79896961 ACTTTCTTCCTCGACGTCTGCTTGTAGTAACCGTTTTTCACCGACGACCTCAATGTCTTTTAGTA
66 ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
* *
79897026 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGGACTCTCTTCC
131 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
*
79897091 TCAACGTCTTGTAGTTTTCGTTTCTTACCGATGACCTCAATG
196 TCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* * *
79897133 TCTTTTAGTAATCTTTCTGGAGGATTCTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGG
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
* * ** *
79897198 ACTTTCTTCCTCAAC--AT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCGATGTCTTTTAGTA
66 ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
*
79897260 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCC
131 ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
*
79897325 TCGACATC-TGCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATT
196 TC-A-A-CGT-CTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
* * *
79897370 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
79897435 ACTTTCTTCCTCGAC
66 ACTTTCTTCCTCGAC
79897450 ATTCTCTTCC
Statistics
Matches: 500, Mismatches: 50, Indels: 11
0.89 0.09 0.02
Matches are distributed among these distances:
234 103 0.21
235 2 0.00
236 2 0.00
237 366 0.73
239 1 0.00
240 26 0.05
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.37
Consensus pattern (237 bp):
TCTTTTAGTAATCTTTCTGGGGGATTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCGAATGG
ACTTTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCTCAATGTCTTTTAGTA
ATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCC
TCAACGTCTTGTAGTTTTCGTTTCTCACCGATGACCTCAATG
Found at i:79897358 original size:354 final size:356
Alignment explanation
Indices: 79896656--79897446 Score: 1163
Period size: 354 Copynumber: 2.2 Consensus size: 356
79896646 GTCGTCTTCT
* * * * *
79896656 TCTTCTAGTAATCTTGCTGGTGGATTGTTTCCTTCGTCGTCACTAGGTGGTTTCTCACCGGCGAA
1 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCC-T--TCGTCACTAGGTGGTTTCTCACCGGCAAA
*
79896721 TGGACTCTCTTCCTCGACGTCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
63 TGGACTCTCTTCCTCAACG-CTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTA
79896786 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
127 GTAATCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCT
* * *
79896851 TCCTCAACGTCTTGTAGTAATCGTTCCTCACGGATGAGCTCAATGTCTTTTAATAATCTTTCTGG
192 TCCTCAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGG
* * * *
79896916 GGGATTATCTCCTTCATCACTAGGTGGTTTCTCGCCGGCGAATGGACTTTCTTCCTCGACGTCTG
257 AGGATTATCTCCTTCATCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTG
*
79896981 CTTGTAGTAACCGTTTTTCACCGACGACCTCAATG
322 CTTGTAGTAACCGTTTCTCACCGACGACCTCAATG
79897016 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
1 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
** * * * **
79897081 ACTCTCTTCCTCAACG-T-CTTGTAGTTTTCGTTTCTTACCGATGACCTCAATGTCTTTTAGTAA
66 ACTCTCTTCCTCAACGCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTAGTAA
* * *
79897144 TCTTTCTGGAGGATTCTCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTTTCTTCCT
131 TCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCCT
** * * *
79897209 CAACATCTTGTAGTTTTCGTTTCTCACCGATGACCTCGATGTCTTTTAGTAATCTTTCTGGAGGA
196 CAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGGAGGA
* *
79897274 TTGTCTCCTTCGTCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTTG
261 TTATCTCCTTCATCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTTG
*** * *
79897339 TAGTTTTCGTTTCTCACCGATGACCTCAATT
326 TAGTAACCGTTTCTCACCGACGACCTCAATG
* * * *
79897370 TCTTTTAGTAATCTTTCTGGGGGCTTATCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAACGG
1 TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
*
79897435 ACTTTCTTCCTC
66 ACTCTCTTCCTC
79897447 GACATTCTCT
Statistics
Matches: 390, Mismatches: 41, Indels: 6
0.89 0.09 0.01
Matches are distributed among these distances:
354 314 0.81
355 1 0.00
357 46 0.12
359 1 0.00
360 28 0.07
ACGTcount: A:0.16, C:0.26, G:0.20, T:0.37
Consensus pattern (356 bp):
TCTTTTAGTAATCTTTCTGGAGGATTGTCTCCTTCGTCACTAGGTGGTTTCTCACCGGCAAATGG
ACTCTCTTCCTCAACGCTGCTTGTAGTAATCGTTTCTCACCGATGACCCCAATGCCTGCTAGTAA
TCTTTCTGGAGGACTATCTCCTTCGTCACTAGGTGGTTTCTCGCCGGCGAATGGACTCTCTTCCT
CAACATCTTGTAGTAATCGTTCCTCACCGATGACCTCAATGTCTTTTAATAATCTTTCTGGAGGA
TTATCTCCTTCATCACTAGGCGGTTTCTCGCCGGCGAATGGACTCTCTTCCTCGACATCTGCTTG
TAGTAACCGTTTCTCACCGACGACCTCAATG
Found at i:79900215 original size:37 final size:37
Alignment explanation
Indices: 79900174--79900349 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
79900164 TTTGAGTACT
79900174 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
79900211 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
79900248 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
79900285 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
79900322 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
79900350 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:79900421 original size:45 final size:46
Alignment explanation
Indices: 79900312--79900435 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
79900302 GTGATAAGTG
* *
79900312 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
79900358 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
79900403 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
79900436 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:79902055 original size:30 final size:30
Alignment explanation
Indices: 79902019--79902087 Score: 120
Period size: 30 Copynumber: 2.3 Consensus size: 30
79902009 CTAGCCTTTG
79902019 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
79902049 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
79902079 CCACCACCA
1 CCACCACCA
79902088 CTTGTACCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:79902762 original size:76 final size:81
Alignment explanation
Indices: 79902644--79902813 Score: 197
Period size: 76 Copynumber: 2.2 Consensus size: 81
79902634 ATATTACGTA
* * * * *
79902644 TATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATAT-TTTTTTTCTA-
1 TATATATTTTATACTATATTATGTATATATCTTTAATACTATATTATGTACATATTTTTTTATAT
*
79902707 C-ATGTTAT-CTTATG
66 CTATGTTATACATATG
* * * *
79902721 TATATATTTTA-ATTATATTATGTATGTATTTTTTATACTATATTATGTACATATTTTTTTATAT
1 TATATATTTTATACTATATTATGTATATATCTTTAATACTATATTATGTACATATTTTTTTATAT
*
79902785 CTATTTTATACATATG
66 CTATGTTATACATATG
*
79902801 TATATATTATATA
1 TATATATTTTATA
79902814 TATCTTAACA
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
76 34 0.45
77 19 0.25
78 1 0.01
79 6 0.08
80 15 0.20
81 1 0.01
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (81 bp):
TATATATTTTATACTATATTATGTATATATCTTTAATACTATATTATGTACATATTTTTTTATAT
CTATGTTATACATATG
Found at i:79902775 original size:25 final size:25
Alignment explanation
Indices: 79902571--79902793 Score: 136
Period size: 25 Copynumber: 8.9 Consensus size: 25
79902561 TTGTTATTAT
* *
79902571 TATATTTCTTAATATTATATTATGTA
1 TATATTT-TTTATACTATATTATGTA
*
79902597 TATATTCTTTTA-A-TATATTA-G-G
1 TATATT-TTTTATACTATATTATGTA
* ** * *
79902619 TATATTCTAAATTCTATATTACGTA
1 TATATTTTTTATACTATATTATGTA
* * *
79902644 TATATATATTATACTATTTTATGTA
1 TATATTTTTTATACTATATTATGTA
* * *
79902669 TATATCTTTAATACTATATTATTTA
1 TATATTTTTTATACTATATTATGTA
* * *
79902694 TATTTTTTTTCTACATGTTATCTTATGTA
1 TATATTTTTTATAC----TATATTATGTA
*
79902723 TATA--TTTTA-ATTATATTATGTA
1 TATATTTTTTATACTATATTATGTA
*
79902745 TGTATTTTTTATACTATATTATGTA
1 TATATTTTTTATACTATATTATGTA
* *
79902770 CATATTTTTTTATATCTATTTTAT
1 TATA-TTTTTTATA-CTATATTAT
79902794 ACATATGTAT
Statistics
Matches: 148, Mismatches: 35, Indels: 27
0.70 0.17 0.13
Matches are distributed among these distances:
21 2 0.01
22 19 0.13
23 8 0.05
24 13 0.09
25 62 0.42
26 19 0.13
27 13 0.09
29 12 0.08
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.58
Consensus pattern (25 bp):
TATATTTTTTATACTATATTATGTA
Found at i:79902796 original size:25 final size:26
Alignment explanation
Indices: 79902749--79902799 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
79902739 TATGTATGTA
*
79902749 TTTTTTATACTATATTATGTACATAT
1 TTTTTTATACTATATTATATACATAT
79902775 TTTTTTATATCTAT-TT-TATACATAT
1 TTTTTTATA-CTATATTATATACATAT
79902800 GTATATATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 11 0.48
27 4 0.17
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (26 bp):
TTTTTTATACTATATTATATACATAT
Found at i:79902868 original size:25 final size:24
Alignment explanation
Indices: 79902840--79902895 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
79902830 GTTATATTTT
*
79902840 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
79902865 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
79902888 CACTATTA
1 CACTATTA
79902896 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:79905073 original size:40 final size:40
Alignment explanation
Indices: 79905002--79905079 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
79904992 TTTCATCAAA
* **
79905002 AATTTTACAGTTCAATGCAGTATACGTAACAATATTCAGT
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
* * *
79905042 AATTTCACAGTTCAATTCGGTATTCAAAACAATATTCA
1 AATTTCACAGTTCAATGCAGTATACAAAACAATATTCA
79905080 ATATTCCATA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.35
Consensus pattern (40 bp):
AATTTCACAGTTCAATGCAGTATACAAAACAATATTCAGT
Found at i:79906065 original size:14 final size:14
Alignment explanation
Indices: 79906046--79906073 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79906036 TATAATATCA
79906046 ATTAAATATTTATT
1 ATTAAATATTTATT
79906060 ATTAAATATTTATT
1 ATTAAATATTTATT
79906074 TAATAACAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTAAATATTTATT
Found at i:79906135 original size:36 final size:36
Alignment explanation
Indices: 79906085--79906245 Score: 112
Period size: 36 Copynumber: 4.4 Consensus size: 36
79906075 AATAACAAAT
* *
79906085 ATAACAATTAAGTTATTCAGTAATAGTC-ATTCATTCA
1 ATAACAA-TCAGTTATTCAGTAATAGTCAATT-ATCCA
* *
79906122 ATGACAATCAGTTATTCAATAAT-GATCAATTATCCA
1 ATAACAATCAGTTATTCAGTAATAG-TCAATTATCCA
* * * *
79906158 GTAATATTCAGTTATTCAGTAATAGTCTAA-TATTCA
1 ATAACAATCAGTTATTCAGTAATAGTC-AATTATCCA
* * * * * * *
79906194 GTAACAGTCAATTATCCGGTAACAGTCAATTATTCA
1 ATAACAATCAGTTATTCAGTAATAGTCAATTATCCA
* *
79906230 GTAATAATCAGTTATT
1 ATAACAATCAGTTATT
79906246 TTATACATTT
Statistics
Matches: 99, Mismatches: 20, Indels: 11
0.76 0.15 0.08
Matches are distributed among these distances:
35 3 0.03
36 84 0.85
37 12 0.12
ACGTcount: A:0.39, C:0.14, G:0.11, T:0.37
Consensus pattern (36 bp):
ATAACAATCAGTTATTCAGTAATAGTCAATTATCCA
Found at i:79906149 original size:18 final size:17
Alignment explanation
Indices: 79906095--79906245 Score: 83
Period size: 18 Copynumber: 8.4 Consensus size: 17
79906085 ATAACAATTA
79906095 AGTTATTCAGTAATAGTC
1 AGTTATTCAGTAATA-TC
*
79906113 A-TTCATTCAATGACA-ATC
1 AGTT-ATTCAGT-A-ATATC
*
79906131 AGTTATTCAATAATGATC
1 AGTTATTCAGTAAT-ATC
* *
79906149 AATTATCCAGTAATATTC
1 AGTTATTCAGTAATA-TC
79906167 AGTTATTCAGTAATAGTC
1 AGTTATTCAGTAATA-TC
* *
79906185 TA-ATATTCAGTAACAGTC
1 -AGTTATTCAGTAATA-TC
* * * *
79906203 AATTATCCGGTAACAGTC
1 AGTTATTCAGTAATA-TC
*
79906221 AATTATTCAGTAATAATC
1 AGTTATTCAGTAAT-ATC
79906239 AGTTATT
1 AGTTATT
79906246 TTATACATTT
Statistics
Matches: 107, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
16 1 0.01
17 5 0.05
18 94 0.88
19 6 0.06
20 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (17 bp):
AGTTATTCAGTAATATC
Found at i:79906479 original size:12 final size:12
Alignment explanation
Indices: 79906462--79906486 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
79906452 AGTGCCGAAT
79906462 CGGTAACAGTAA
1 CGGTAACAGTAA
79906474 CGGTAACAGTAA
1 CGGTAACAGTAA
79906486 C
1 C
79906487 CAGTAAAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.20, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTAACAGTAA
Found at i:79908039 original size:21 final size:21
Alignment explanation
Indices: 79908010--79908063 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
79908000 TTTTCACTTT
* *
79908010 TAATTATAATCATTAAAATAA
1 TAATAATAATAATTAAAATAA
* *
79908031 TAATAATAATAATTATATTAA
1 TAATAATAATAATTAAAATAA
*
79908052 CAATAATAATAA
1 TAATAATAATAA
79908064 AATTTTTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (21 bp):
TAATAATAATAATTAAAATAA
Found at i:79908883 original size:5 final size:5
Alignment explanation
Indices: 79908875--79908912 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
79908865 TTTTTTTTTT
*
79908875 TAATA TAATA CAATA TAATA TAATA TAATA TAATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
79908913 AGCATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:79914766 original size:5 final size:5
Alignment explanation
Indices: 79914758--79914805 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
79914748 CTTTTTTTTT
*
79914758 TAATA TAATA CAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAA
79914806 AGCATAAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:79916665 original size:5 final size:5
Alignment explanation
Indices: 79916657--79916688 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
79916647 TTTAGTTTAT
79916657 ATATA ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA ATATA AT
79916689 TAAAACATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:79918080 original size:6 final size:6
Alignment explanation
Indices: 79918071--79918097 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
79918061 CACCGTAAAG
79918071 GTAACA GTAACA GTAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTA
79918098 GCGGTACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
GTAACA
Found at i:79923590 original size:3 final size:3
Alignment explanation
Indices: 79923584--79923611 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
79923574 GGTGTCTATA
79923584 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT T
79923612 GTTTGGTCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:79928440 original size:51 final size:51
Alignment explanation
Indices: 79928374--79928611 Score: 318
Period size: 51 Copynumber: 4.7 Consensus size: 51
79928364 TTCCCTTGCA
* * *
79928374 GCTGCTGATGGCTCCCCTGTTTCAGCCATTGAAGATGATTCCTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * *
79928425 GTTGATGATGACTCCCCTGTTTCAGCCATAGAAGATGGTTCTTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * *
79928476 GCTGATGATGACTCCCCTGTTTCAGCCATAGAATATGGTTCTTTCCCTTTT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
* * * *
79928527 GCTGCTGATGACTCCCATGTTTCAGCCATTGAAGAT-AGTTTTTTCCCTTGT
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGA-TTCTTTCCCTTTT
* *
79928578 GCTGAAGATGACTCCCCTTTTTCAGCC-TTGAAGA
1 GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGA
79928612 AAGAAAAAGA
Statistics
Matches: 167, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 7 0.04
51 160 0.96
ACGTcount: A:0.18, C:0.26, G:0.19, T:0.37
Consensus pattern (51 bp):
GCTGATGATGACTCCCCTGTTTCAGCCATTGAAGATGATTCTTTCCCTTTT
Found at i:79929518 original size:17 final size:17
Alignment explanation
Indices: 79929496--79929529 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79929486 ATCCACTAAT
*
79929496 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
79929513 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
79929530 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:79934156 original size:17 final size:17
Alignment explanation
Indices: 79934134--79934167 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79934124 ATCCACTAAT
*
79934134 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
79934151 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
79934168 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:79935233 original size:18 final size:19
Alignment explanation
Indices: 79935212--79935257 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
79935202 ATTAATTTTG
79935212 ATTTTTTAATTATTAAA-T
1 ATTTTTTAATTATTAAATT
*
79935230 ATTTTATT-ATTTTTAAATT
1 ATTTT-TTAATTATTAAATT
*
79935249 ATTTATTAA
1 ATTTTTTAA
79935258 CATGACATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTTTAATTATTAAATT
Found at i:79937172 original size:51 final size:52
Alignment explanation
Indices: 79937103--79937598 Score: 483
Period size: 51 Copynumber: 9.7 Consensus size: 52
79937093 TGATGATGAA
* *
79937103 TCCCCTGTTTCAGCCATTGAAGATTGTTCTTTCCCGT-TTGCTGCTGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * * * *
79937154 TTCCCTTTTTCAGTCATTGAAGATGGTTC-TTCCCCTGCTGCCGCTGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* ** *
79937205 TCCCCTGTTTCAGCCATTGAAGATGGATCTTT-CCCTGTTGCTAATGATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * *** *
79937256 TTCCCTGTTTTAGCCATTGAAGATGGTTC-TTCCCCTGCCACTGCCGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * * ** **
79937307 TCCCCTGTTTCAGCTATTGAAGATGGTTCTTT-CTCTTTTGCTAATAATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* ** *
79937358 TCCCCTGTTTCAGTCATTGAAGATGGTTC-TTCCCCTGCCGCTGCCGGTGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * * ** *
79937409 TCCCCTGTTTCAGCCATTGAATATGGTTCTGTT--TCTTTTGCTAATGATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCT-TTCCCCTGTTGCTGCTGGTGAC
* * ** ** *
79937460 TCCCCTGTTTCATCTATTGAAGATGGTTC-TTCCCCTGAAGCTGCCAGTGAA
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
* * ** *
79937511 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTT-CTCTTTTGCTAATGATGAC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
*
79937562 TCCCCTGTTTCAGCCATTGAAGATGGCTC-TTCCCCTG
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTG
79937599 ACGCTTTCTT
Statistics
Matches: 346, Mismatches: 88, Indels: 22
0.76 0.19 0.05
Matches are distributed among these distances:
49 2 0.01
50 12 0.03
51 324 0.94
52 6 0.02
53 2 0.01
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.37
Consensus pattern (52 bp):
TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCCCCTGTTGCTGCTGGTGAC
Found at i:79937236 original size:102 final size:102
Alignment explanation
Indices: 79937103--79937603 Score: 718
Period size: 102 Copynumber: 4.9 Consensus size: 102
79937093 TGATGATGAA
* * * ** * * *
79937103 TCCCCTGTTTCAGCCATTGAAGATTGTTCTTTCCCGTTTGCTGCTGGTGACTTCCCTTTTTCAGT
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
* * *
79937168 CATTGAAGATGGTTCTTCCCCTGCTGCCGCTGGTGAC
66 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
* * * * * *
79937205 TCCCCTGTTTCAGCCATTGAAGATGGATCTTTCCCTGTTGCTAATGATGACTTCCCTGTTTTAGC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
*
79937270 CATTGAAGATGGTTCTTCCCCTGCCACTGCCGGTGAC
66 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
* *
79937307 TCCCCTGTTTCAGCTATTGAAGATGGTTCTTTCTCTTTTGCTAATAATGACTCCCCTGTTTCAGT
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
79937372 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
66 CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
*
79937409 TCCCCTGTTTCAGCCATTGAATATGGTTCTGTT-TCTTTTGCTAATGATGACTCCCCTGTTTCA-
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCT-TTCTCTTTTGCTAATGATGACTCCCCTGTTTCAG
** * *
79937472 TCTATTGAAGATGGTTCTTCCCCTGAAGCTGCCAGTGAA
65 TC-ATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
*
79937511 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGC
1 TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
* *
79937576 CATTGAAGATGGCTCTTCCCCTGACGCT
66 CATTGAAGATGGTTCTTCCCCTGCCGCT
79937604 TTCTTTCCCT
Statistics
Matches: 361, Mismatches: 34, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
101 4 0.01
102 354 0.98
103 3 0.01
ACGTcount: A:0.16, C:0.28, G:0.20, T:0.37
Consensus pattern (102 bp):
TCCCCTGTTTCAGCCATTGAAGATGGTTCTTTCTCTTTTGCTAATGATGACTCCCCTGTTTCAGT
CATTGAAGATGGTTCTTCCCCTGCCGCTGCCGGTGAC
Found at i:79939318 original size:12 final size:12
Alignment explanation
Indices: 79939301--79939326 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
79939291 AGTCCAGGTA
79939301 AACCATTCCATG
1 AACCATTCCATG
79939313 AACCATTCCATG
1 AACCATTCCATG
79939325 AA
1 AA
79939327 TTCCATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.31, G:0.08, T:0.23
Consensus pattern (12 bp):
AACCATTCCATG
Found at i:79942786 original size:46 final size:46
Alignment explanation
Indices: 79942734--79943053 Score: 417
Period size: 46 Copynumber: 7.0 Consensus size: 46
79942724 AGTGTGCTCT
79942734 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
79942780 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
79942826 CTTATATGAAATATGTAAAACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
** *
79942872 CTGATATGAAATGAATAAGACGATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** * *
79942918 ATGACGGGAAATGAATAAGATCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
79942964 GTGACATGAAATGTGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
79943010 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
79943054 TCATGTCAAA
Statistics
Matches: 243, Mismatches: 30, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 242 1.00
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:79943359 original size:16 final size:17
Alignment explanation
Indices: 79943338--79943370 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
79943328 ATGATGGTGC
79943338 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
79943354 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
79943371 TATACTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:79952371 original size:70 final size:71
Alignment explanation
Indices: 79952243--79952375 Score: 191
Period size: 70 Copynumber: 1.9 Consensus size: 71
79952233 CTGTATGAAC
* * * *
79952243 TAATTAGACCACGATCCGGGATATGGGACGGGGGTTATGGATGTTAGGATCTGAGCTTAAACTGC
1 TAATTAGACCAAGATCCGGGATATGGGACAGGGGTTACGGATGTTAGGATCTAAGCTTAAACTGC
79952308 AGGAAT
66 AGGAAT
79952314 TAATTAGACCATAG-TCCGGGATATGGGA-AGGGGTTACGGATGTTAGGAT-TCAAGCTTAAACT
1 TAATTAGACCA-AGATCCGGGATATGGGACAGGGGTTACGGATGTTAGGATCT-AAGCTTAAACT
79952376 TGTCAGATGC
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
69 1 0.02
70 29 0.52
71 25 0.45
72 1 0.02
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (71 bp):
TAATTAGACCAAGATCCGGGATATGGGACAGGGGTTACGGATGTTAGGATCTAAGCTTAAACTGC
AGGAAT
Found at i:79956970 original size:31 final size:31
Alignment explanation
Indices: 79956908--79956979 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 31
79956898 AAGAATTAAA
* * *
79956908 AGTTTAATGACTTAAATAAAATTTTTTAAAT
1 AGTTTAATGACTTAAAGAAAATATTTCAAAT
*
79956939 AGTTTAATGACTTCAACGAAAA-ATTTCAAAT
1 AGTTTAATGACTT-AAAGAAAATATTTCAAAT
*
79956970 AATTTAATGA
1 AGTTTAATGA
79956980 TAATTTTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 29 0.83
32 6 0.17
ACGTcount: A:0.46, C:0.07, G:0.08, T:0.39
Consensus pattern (31 bp):
AGTTTAATGACTTAAAGAAAATATTTCAAAT
Found at i:79962201 original size:31 final size:31
Alignment explanation
Indices: 79962118--79962295 Score: 171
Period size: 31 Copynumber: 5.7 Consensus size: 31
79962108 CTTGTCACTT
* *
79962118 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTATCACTTTTCACTGATCAG
* * * * * *
79962149 ATGGCTGGAGTTA-CTATTTTTCACTGATCAG
1 GTAGCCGAAGCTATC-ACTTTTCACTGATCAG
* * *
79962180 GTAGCCGGACCTATCACTTTTCATTGATCAG
1 GTAGCCGAAGCTATCACTTTTCACTGATCAG
*
79962211 GTAGTCGGAA-CTATCACTTTTCACTGATCAG
1 GTAG-CCGAAGCTATCACTTTTCACTGATCAG
** *
79962242 GTAGCAAAAGCTATCACTTTTCACTGATCAA
1 GTAGCCGAAGCTATCACTTTTCACTGATCAG
* *
79962273 GTAGCTGAAGCTACCACTTTTCA
1 GTAGCCGAAGCTATCACTTTTCA
79962296 TTTGTCATTT
Statistics
Matches: 120, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
30 4 0.03
31 112 0.93
32 4 0.03
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (31 bp):
GTAGCCGAAGCTATCACTTTTCACTGATCAG
Found at i:79969618 original size:20 final size:20
Alignment explanation
Indices: 79969593--79969636 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
79969583 TAATAATAAA
79969593 TTTAGTTTTTGTTTTGTAAT
1 TTTAGTTTTTGTTTTGTAAT
*
79969613 TTTAGTTTTTTTTTTGTAAT
1 TTTAGTTTTTGTTTTGTAAT
79969633 TTTA
1 TTTA
79969637 TTATTATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.16, C:0.00, G:0.11, T:0.73
Consensus pattern (20 bp):
TTTAGTTTTTGTTTTGTAAT
Found at i:79969646 original size:20 final size:20
Alignment explanation
Indices: 79969593--79969646 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
79969583 TAATAATAAA
79969593 TTTAGTTTT-TGTTTTGTAAT
1 TTTAGTTTTAT-TTTTGTAAT
*
79969613 TTTAGTTTTTTTTTTGTAAT
1 TTTAGTTTTATTTTTGTAAT
79969633 TTTA-TTATTATTTT
1 TTTAGTT-TTATTTT
79969647 GACTCTCAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
19 2 0.06
20 28 0.90
21 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.09, T:0.74
Consensus pattern (20 bp):
TTTAGTTTTATTTTTGTAAT
Found at i:79972174 original size:22 final size:24
Alignment explanation
Indices: 79972149--79972194 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
79972139 TAGTTGGAAG
79972149 TTTAGT-ATTGT-TTTTATTAAGA
1 TTTAGTCATTGTATTTTATTAAGA
* *
79972171 TTTAGTCTTTTTATTTTATTAAGA
1 TTTAGTCATTGTATTTTATTAAGA
79972195 CTTCTAGCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.30
23 3 0.15
24 11 0.55
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.61
Consensus pattern (24 bp):
TTTAGTCATTGTATTTTATTAAGA
Found at i:79974059 original size:31 final size:28
Alignment explanation
Indices: 79973988--79974065 Score: 75
Period size: 31 Copynumber: 2.6 Consensus size: 28
79973978 AAATATGTAC
*
79973988 AATTGAATCAAAACTAATGTTATATATAT
1 AATTGAATC-AAATTAATGTTATATATAT
* *
79974017 ACATATAAATCATAATTCATGTTTCATATATAT
1 A-AT-TGAATCA-AATTAATG-TT-ATATATAT
79974050 AATTGAATCAAATTAA
1 AATTGAATCAAATTAA
79974066 AATTTATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
29 1 0.03
30 8 0.21
31 17 0.44
32 4 0.10
33 9 0.23
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.38
Consensus pattern (28 bp):
AATTGAATCAAATTAATGTTATATATAT
Found at i:79975047 original size:57 final size:55
Alignment explanation
Indices: 79974977--79975171 Score: 203
Period size: 57 Copynumber: 3.4 Consensus size: 55
79974967 CCTCAAATCC
* * * *
79974977 AACAATCGAGCTTGATTTTCCCTTTTTTGCCATTTTCCCCGGATCCTCAAATCCATT
1 AACAACCGAACTTGA-TTTCCCTTTTTTGCCATTTT-CCCGGATCCTCAAACCCGTT
* ** * *
79975034 AACAACCGAGCTTGATTTTCCCTTTTTAACCCATTTTCCTGGATCCTCCAACCCGTT
1 AACAACCGAACTTGA-TTTCCCTTTTT-TGCCATTTTCCCGGATCCTCAAACCCGTT
* * *
79975091 AACAACCGAACTTGATTTCGCC-TTTTTGACCCATTTTCCTGAATCCTCCAACCCGTT
1 AACAACCGAACTTGATTTC-CCTTTTTTG--CCATTTTCCCGGATCCTCAAACCCGTT
*
79975148 AACAACCGAACTTGACTTCCCTTT
1 AACAACCGAACTTGATTTCCCTTT
79975172 GTTAGTATTA
Statistics
Matches: 121, Mismatches: 12, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
56 10 0.08
57 104 0.86
58 7 0.06
ACGTcount: A:0.23, C:0.32, G:0.10, T:0.35
Consensus pattern (55 bp):
AACAACCGAACTTGATTTCCCTTTTTTGCCATTTTCCCGGATCCTCAAACCCGTT
Found at i:79978739 original size:2 final size:2
Alignment explanation
Indices: 79978732--79978756 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
79978722 GTTCAGTTCA
79978732 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
79978757 AAAAAAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:79981586 original size:27 final size:27
Alignment explanation
Indices: 79981553--79981604 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
79981543 TTAAAAATAT
79981553 ATTTTTAATAA-CTTTTATACATTTTAA
1 ATTTTT-ATAATCTTTTATACATTTTAA
* *
79981580 ATTTTTATAATTTTTTATATATTTT
1 ATTTTTATAATCTTTTATACATTTT
79981605 TTAGAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (27 bp):
ATTTTTATAATCTTTTATACATTTTAA
Found at i:79981591 original size:9 final size:9
Alignment explanation
Indices: 79981553--79981616 Score: 51
Period size: 9 Copynumber: 6.8 Consensus size: 9
79981543 TTAAAAATAT
79981553 ATTTTTAATA
1 ATTTTT-ATA
*
79981563 ACTTTTATA
1 ATTTTTATA
79981572 CA-TTTTA-A
1 -ATTTTTATA
79981580 ATTTTTATA
1 ATTTTTATA
79981589 ATTTTTTATA
1 A-TTTTTATA
*
79981599 TATTTTTTAGA
1 -A-TTTTTATA
79981610 ATTTTTA
1 ATTTTTA
79981617 ACTTTTTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
7 1 0.02
8 6 0.13
9 16 0.34
10 15 0.32
11 9 0.19
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (9 bp):
ATTTTTATA
Found at i:79981606 original size:11 final size:10
Alignment explanation
Indices: 79981581--79981615 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
79981571 ACATTTTAAA
79981581 TTTTTATAAT
1 TTTTTATAAT
79981591 TTTTTATATAT
1 TTTTTATA-AT
*
79981602 TTTTTAGAAT
1 TTTTTATAAT
79981612 TTTT
1 TTTT
79981616 AACTTTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:79993635 original size:3 final size:3
Alignment explanation
Indices: 79993629--79993666 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
79993619 AAACACTAGG
79993629 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AG
1 AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AGC AG
79993667 TAGTTAAAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.32, G:0.34, T:0.00
Consensus pattern (3 bp):
AGC
Found at i:80007045 original size:4 final size:4
Alignment explanation
Indices: 80007036--80007064 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
80007026 CCCAACTTAC
80007036 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT A
80007065 CGTGCTAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.24, T:0.48
Consensus pattern (4 bp):
ATGT
Found at i:80010521 original size:189 final size:185
Alignment explanation
Indices: 80010196--80010572 Score: 542
Period size: 189 Copynumber: 2.0 Consensus size: 185
80010186 TAAATGCATG
* *
80010196 TATGTATTTAGTTATAATAAGCACTGAAATTTCATGGAATTATTATTGCAGTGAATAGATAGCCA
1 TATGTATATAGTTATAATAAGCACTGAAATTTCATGGAATTACTATTGCAGTGAATAGATAGCCA
* * * * *
80010261 TGTTTATCTCTTATATGCCTTCAATTGAATACATTCAAGCAAAGACTTGTTAAATGGCCTAATTA
66 TGTTTAGCTATTACATGCCTTCAATTCAATACATTCAAGCAAAGACTAGTTAAATGGCCTAATTA
* * *
80010326 CACTTTTAG-CATCTGCTAAACGTTAATAATTCAATTTAATCCGTTTTAGCTCCTT
131 CACTTTTAGCCA-CTCCTAAACCTTAATAATTCAATTTAATCCCTTTTAGCTCCTT
* * *
80010381 TATGTATATAGTTATAATAAGCCCTGAAATTTCTTGGAAAGTATTACTATTGCAGTGAATGGATA
1 TATGTATATAGTTATAATAAGCACTGAAATTTCATGG--A--ATTACTATTGCAGTGAATAGATA
*
80010446 GCCATGTTTAGCTATTACATGCCTTCAATTCAATACATTCAAGCAAAGACTAGTTAGATGGTCC-
62 GCCATGTTTAGCTATTACATGCCTTCAATTCAATACATTCAAGCAAAGACTAGTTAAATGG-CCT
* *
80010510 AATTCCACTTTTAGCCACTCCTAAACCTTAATAATTCAATTTGATCCCTTTTAGCTCCTT
126 AATTACACTTTTAGCCACTCCTAAACCTTAATAATTCAATTTAATCCCTTTTAGCTCCTT
80010570 TAT
1 TAT
80010573 TAAATGGAAA
Statistics
Matches: 170, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
185 34 0.20
187 1 0.01
189 131 0.77
190 4 0.02
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (185 bp):
TATGTATATAGTTATAATAAGCACTGAAATTTCATGGAATTACTATTGCAGTGAATAGATAGCCA
TGTTTAGCTATTACATGCCTTCAATTCAATACATTCAAGCAAAGACTAGTTAAATGGCCTAATTA
CACTTTTAGCCACTCCTAAACCTTAATAATTCAATTTAATCCCTTTTAGCTCCTT
Found at i:80014104 original size:104 final size:105
Alignment explanation
Indices: 80013858--80014125 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
80013848 TTGTATATAA
** *
80013858 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
80013922 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
80013963 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
80014028 TGAAATGTG-AAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
** *
80014067 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGCGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
80014126 ATAACGGTTA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 85 0.55
105 68 0.44
106 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.31, T:0.30
Consensus pattern (105 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:80026502 original size:16 final size:16
Alignment explanation
Indices: 80026483--80026530 Score: 62
Period size: 15 Copynumber: 3.0 Consensus size: 16
80026473 AATTCCAAAA
*
80026483 AATTAAAATTAAAATT
1 AATTAAATTTAAAATT
*
80026499 AATT-AATTTAAAATA
1 AATTAAATTTAAAATT
80026514 ATATTAAATTTAAAATT
1 A-ATTAAATTTAAAATT
80026531 TACATAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 10 0.37
16 7 0.26
17 10 0.37
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTAAATTTAAAATT
Found at i:80028858 original size:50 final size:50
Alignment explanation
Indices: 80028783--80028959 Score: 282
Period size: 50 Copynumber: 3.5 Consensus size: 50
80028773 CCATGGCAAC
80028783 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
80028833 AAGTGATAAGTAATAGCTTCGGCTACACTTATCTAATCAAGGACAAGTGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
*
80028883 AAGTGATAAGTGATAGCTTCGGCTACACTTATTTGATCAAGGACAAATGA
1 AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
* * *
80028933 CAAGTGAAAAGTGGTAGTTTCGGCTAC
1 -AAGTGATAAGTGATAGCTTCGGCTAC
80028960 CTGATCAGTG
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 93 0.80
51 23 0.20
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATGA
Found at i:80028973 original size:31 final size:31
Alignment explanation
Indices: 80028935--80029052 Score: 200
Period size: 31 Copynumber: 3.8 Consensus size: 31
80028925 ACAAATGACA
*
80028935 AGTGAAAAGTGGTAGTTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80028966 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80028997 AGTGAAAAATGGTAGCTTCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
80029028 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
80029053 AAGTGACAAG
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 81 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:80029140 original size:47 final size:46
Alignment explanation
Indices: 80029070--80029233 Score: 167
Period size: 47 Copynumber: 3.6 Consensus size: 46
80029060 AAGTGATTTC
* *
80029070 CGTATAAGACCATATCTGGGATATGGCATCGGTGTGATATATGCTA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
80029116 CTGTATAAGACCATATCTGGGATATGGCATCAGTGAGATATGTGATT
1 C-GTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
* * *
80029163 CGTGTAAGACCATAGCTGGGCTATGGCATC-----GATATATGAATA
1 CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATG-ATA
* * * *
80029205 TGTGTAAGACCATAGCTGGGCTATGGCAT
1 CGTATAAGACCATATCTGGGATATGGCAT
80029234 AATTATGTGA
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 7 0.07
42 30 0.29
46 27 0.26
47 41 0.39
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (46 bp):
CGTATAAGACCATATCTGGGATATGGCATCGGTGAGATATATGATA
Found at i:80029222 original size:42 final size:42
Alignment explanation
Indices: 80029164--80029261 Score: 153
Period size: 42 Copynumber: 2.3 Consensus size: 42
80029154 TATGTGATTC
* *
80029164 GTGTAAGACCATAGCTGGGCTATGGCATCGA-TATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCAT-AATTATATGAAGAT
*
80029206 GTGTAAGACCATAGCTGGGCTATGGCATAATTATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATAATTATATGAAGAT
80029248 GTGTAAGACCATAG
1 GTGTAAGACCATAG
80029262 TTGAACATCG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
41 1 0.02
42 51 0.98
ACGTcount: A:0.32, C:0.13, G:0.28, T:0.28
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATAATTATATGAAGAT
Found at i:80041914 original size:6 final size:6
Alignment explanation
Indices: 80041900--80041950 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
80041890 CACCGCCAAA
* ** * *
80041900 TCCACC TCCAGC TCCACC TCCACC TCCAAA TCCACC ACCAGC TCCACC
1 TCCACC TCCACC TCCACC TCCACC TCCACC TCCACC TCCACC TCCACC
80041948 TCC
1 TCC
80041951 GAATCCTCCA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.22, C:0.59, G:0.04, T:0.16
Consensus pattern (6 bp):
TCCACC
Found at i:80041923 original size:30 final size:30
Alignment explanation
Indices: 80041889--80041950 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
80041879 ACCGCCTGTA
*
80041889 CCACCGCCAAATCCACCTCCAGCTCCACCT
1 CCACCGCCAAATCCACCACCAGCTCCACCT
*
80041919 CCACCTCCAAATCCACCACCAGCTCCACCT
1 CCACCGCCAAATCCACCACCAGCTCCACCT
80041949 CC
1 CC
80041951 GAATCCTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.24, C:0.58, G:0.05, T:0.13
Consensus pattern (30 bp):
CCACCGCCAAATCCACCACCAGCTCCACCT
Found at i:80041955 original size:24 final size:24
Alignment explanation
Indices: 80041919--80042005 Score: 93
Period size: 24 Copynumber: 3.4 Consensus size: 24
80041909 AGCTCCACCT
*
80041919 CCACCTCCAAATCCACCACCAGCT
1 CCACCTCCAAATCCACCACCAGCA
*
80041943 CCACCTCCGAATCCTCCACCACCACCGGCA
1 CCACCTCC-AA--ATCCACCACCA---GCA
*
80041973 CCACCTCCAAATCCTCCACCAGCA
1 CCACCTCCAAATCCACCACCAGCA
80041997 CCACCTCCA
1 CCACCTCCA
80042006 GCACCGCCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
24 20 0.38
25 2 0.04
27 19 0.36
29 2 0.04
30 10 0.19
ACGTcount: A:0.26, C:0.56, G:0.06, T:0.11
Consensus pattern (24 bp):
CCACCTCCAAATCCACCACCAGCA
Found at i:80041965 original size:30 final size:29
Alignment explanation
Indices: 80041901--80042005 Score: 106
Period size: 30 Copynumber: 3.5 Consensus size: 29
80041891 ACCGCCAAAT
*
80041901 CCACCTCCAGCTCCACCTCC-A-CCTCCAAA
1 CCACCACCAGCTCCACCTCCAATCCTCC--A
80041930 TCCACCACCAGCTCCACCTCCGAATCCTCCA
1 -CCACCACCAGCTCCACCTCC-AATCCTCCA
* *
80041961 CCACCACCGGCACCACCTCCAAATCCTCCA
1 CCACCACCAGCTCCACCTCC-AATCCTCCA
* *
80041991 CCAGCACCACCTCCA
1 CCACCACCAGCTCCA
80042006 GCACCGCCAC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
30 57 0.89
31 1 0.02
32 1 0.02
33 5 0.08
ACGTcount: A:0.25, C:0.57, G:0.06, T:0.12
Consensus pattern (29 bp):
CCACCACCAGCTCCACCTCCAATCCTCCA
Found at i:80042015 original size:24 final size:23
Alignment explanation
Indices: 80041959--80042016 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
80041949 CCGAATCCTC
*
80041959 CACCACCACCGGCACCACCTCCA
1 CACCACCACCAGCACCACCTCCA
* *
80041982 AATCCTCCACCAGCACCACCTCCA
1 CA-CCACCACCAGCACCACCTCCA
*
80042006 GCACCGCCACC
1 -CACCACCACC
80042017 GAAGCCACCA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
23 1 0.04
24 26 0.93
25 1 0.04
ACGTcount: A:0.26, C:0.59, G:0.09, T:0.07
Consensus pattern (23 bp):
CACCACCACCAGCACCACCTCCA
Found at i:80042093 original size:30 final size:30
Alignment explanation
Indices: 80042045--80042352 Score: 294
Period size: 30 Copynumber: 10.5 Consensus size: 30
80042035 AAAGCCGCCG
80042045 CCACCTCCAA-TGCCACCACCCTTTCCAATT
1 CCACCTCCAAGT-CCACCACCCTTTCCAATT
* *
80042075 CCTCCACCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATT
* * * *
80042105 CCACCTCCAAGGCCTCC-TCCTTTGCCAATA
1 CCACCTCCAAGTCCACCACCCTTT-CCAATT
* * *
80042135 CCACTTCCAAGTCCACCACCATGTCC---T
1 CCACCTCCAAGTCCACCACCCTTTCCAATT
80042162 ---CCTCCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATT
* * * **
80042189 CCACCTCCAAGGCCTCC-TCCTTTGCCAACA
1 CCACCTCCAAGTCCACCACCCTTT-CCAATT
80042219 CCACCTCCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATT
* * * * *
80042249 CCACCTCCGAGGCCTCC-TCCTTTGCCAATA
1 CCACCTCCAAGTCCACCACCCTTT-CCAATT
80042279 CCACCTCCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATT
* * *
80042309 CCACCTCCAAGTCCACCTCCTTTTCCTATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATT
* *
80042339 CCACCACCATGTCC
1 CCACCTCCAAGTCC
80042353 TCCTCCAAGT
Statistics
Matches: 222, Mismatches: 43, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
24 20 0.09
27 1 0.00
29 15 0.07
30 172 0.77
31 14 0.06
ACGTcount: A:0.21, C:0.49, G:0.06, T:0.24
Consensus pattern (30 bp):
CCACCTCCAAGTCCACCACCCTTTCCAATT
Found at i:80042114 original size:42 final size:42
Alignment explanation
Indices: 80042068--80042208 Score: 135
Period size: 42 Copynumber: 3.4 Consensus size: 42
80042058 CACCACCCTT
*
80042068 TCCAATTCCTCCACCAAGTCCACCACCCTTTCCAATTCCACC
1 TCCAATTCCTCCTCCAAGTCCACCACCCTTTCCAATTCCACC
** ** ** *
80042110 TCCAAGGCCTCCTCC-TTTGCCAATACCAC-TTCCAAGTCCACC
1 TCCAATTCCTCCTCCAAGT-CCACCACC-CTTTCCAATTCCACC
*
80042152 ACC-ATGTCCTCCTCCAAGTCCACCACCCTTTCCAATTCCACC
1 TCCAAT-TCCTCCTCCAAGTCCACCACCCTTTCCAATTCCACC
**
80042194 TCCAAGGCCTCCTCC
1 TCCAATTCCTCCTCC
80042209 TTTGCCAACA
Statistics
Matches: 74, Mismatches: 19, Indels: 12
0.70 0.18 0.11
Matches are distributed among these distances:
41 3 0.04
42 68 0.92
43 3 0.04
ACGTcount: A:0.21, C:0.49, G:0.06, T:0.23
Consensus pattern (42 bp):
TCCAATTCCTCCTCCAAGTCCACCACCCTTTCCAATTCCACC
Found at i:80042133 original size:60 final size:60
Alignment explanation
Indices: 80042045--80042732 Score: 428
Period size: 60 Copynumber: 11.2 Consensus size: 60
80042035 AAAGCCGCCG
* *
80042045 CCACCTCCAA-TGCCACCACCCTTTCCAATTCCTCCACCAAGTCCACCACCCTTTCCAATT
1 CCACCTCCAAGT-CCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTTCCAATT
* * * * * * *
80042105 CCACCTCCAAGGCCTCC-TCCTTTGCCAATACCACTTCCAAGTCCACCACCATGTCC---T
1 CCACCTCCAAGTCCACCACCCTTT-CCAATTCCACCTCCAAGTCCACCACCCTTTCCAATT
* * * **
80042162 ---CCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCC-TCCTTTGCCAACA
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTT-CCAATT
* * * * *
80042219 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCGAGGCCTCC-TCCTTTGCCAATA
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTT-CCAATT
* * *
80042279 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTTCCAATT
* * * * *** ** * * *
80042339 CCACCACCATGTCCTCCTCCAAGTCCACCTCC-CTTTCCTATTCCACCACCAAGGCCTCCTCCTT
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCAC-CTCCAAGT---CCACC-A------C-CC-T
*
80042403 TTCCAATA
53 TTCCAATT
* * * *
80042411 CCACCTCCAAGTCCACCACCCTTTCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCAATA
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTTCCAATT
* *
80042471 CCACCTCCAAGTCCACCACCCTTTCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCTATTCCACC
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACC-AC----CCT-TT---CC
80042536 ACCATGT
57 A--AT-T
* * * * * * * * * *
80042543 CCTCCTCCAAGTCCACCTCTCTTGCCAATCCCACCACCAAGGCCTCCACCTTTTCCAATC
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTTCCAATT
* * * * * * * * * * *
80042603 CCGCCGCCAAGGCCTCCACCCTTGCCAATCCCACCACCAAGACCCCCACCCTTGCCAATG
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTTCCAATT
* * *
80042663 CCACCACCAAGTCCACCACCCTTTCCAATGCCACCACCAAGTCCACCA-CCTTTACCAATT
1 CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTT-CCAATT
*
80042723 CCACCACCAA
1 CCACCTCCAA
80042733 ACCCTCCCCC
Statistics
Matches: 495, Mismatches: 95, Indels: 76
0.74 0.14 0.11
Matches are distributed among these distances:
53 3 0.01
54 33 0.07
55 5 0.01
57 1 0.00
59 10 0.02
60 331 0.67
61 8 0.02
62 1 0.00
63 8 0.02
65 2 0.00
66 4 0.01
67 2 0.00
69 8 0.02
70 1 0.00
71 4 0.01
72 73 0.15
73 1 0.00
ACGTcount: A:0.22, C:0.49, G:0.06, T:0.23
Consensus pattern (60 bp):
CCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCACCCTTTCCAATT
Found at i:80042173 original size:84 final size:84
Alignment explanation
Indices: 80042074--80042238 Score: 303
Period size: 84 Copynumber: 2.0 Consensus size: 84
80042064 CCTTTCCAAT
*
80042074 TCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAATACCAC
1 TCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
*
80042139 TTCCAAGTCCACCACCATG
66 CTCCAAGTCCACCACCATG
*
80042158 TCCTCCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
1 TCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
80042223 CTCCAAGTCCACCACC
66 CTCCAAGTCCACCACC
80042239 CTTTCCAATT
Statistics
Matches: 78, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.22, C:0.50, G:0.07, T:0.22
Consensus pattern (84 bp):
TCCTCCACCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
CTCCAAGTCCACCACCATG
Found at i:80042191 original size:24 final size:24
Alignment explanation
Indices: 80042139--80042191 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
80042129 CCAATACCAC
**
80042139 TTCCAAGTCCACCACCATGTCCTC
1 TTCCAAGTCCACCACCATGTCCAA
* * *
80042163 CTCCAAGTCCACCACCCTTTCCAA
1 TTCCAAGTCCACCACCATGTCCAA
80042187 TTCCA
1 TTCCA
80042192 CCTCCAAGGC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.23, C:0.47, G:0.06, T:0.25
Consensus pattern (24 bp):
TTCCAAGTCCACCACCATGTCCAA
Found at i:80042228 original size:42 final size:42
Alignment explanation
Indices: 80042097--80042235 Score: 156
Period size: 42 Copynumber: 3.3 Consensus size: 42
80042087 CCACCACCCT
* *
80042097 TTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAATACCAC
1 TTCCAAGTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
* * * ** *
80042139 TTCCAAGTCCACCACCATGTCCTCCTCC-AAGTCCACCACC-C
1 TTCCAAGTCCACCTCCAAGGCCTCCTCCTTTG-CCAACACCAC
*
80042180 TTTCCAATTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
1 -TTCCAAGTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
*
80042223 CTCCAAGTCCACC
1 TTCCAAGTCCACC
80042236 ACCCTTTCCA
Statistics
Matches: 76, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
41 2 0.03
42 72 0.95
43 2 0.03
ACGTcount: A:0.22, C:0.48, G:0.07, T:0.23
Consensus pattern (42 bp):
TTCCAAGTCCACCTCCAAGGCCTCCTCCTTTGCCAACACCAC
Found at i:80042358 original size:42 final size:42
Alignment explanation
Indices: 80042312--80042400 Score: 151
Period size: 42 Copynumber: 2.1 Consensus size: 42
80042302 TCCAATTCCA
* * *
80042312 CCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCATGTCCT
1 CCTCCAAGTCCACCTCCCTTTCCTATTCCACCACCAAGGCCT
80042354 CCTCCAAGTCCACCTCCCTTTCCTATTCCACCACCAAGGCCT
1 CCTCCAAGTCCACCTCCCTTTCCTATTCCACCACCAAGGCCT
80042396 CCTCC
1 CCTCC
80042401 TTTTCCAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.17, C:0.51, G:0.06, T:0.27
Consensus pattern (42 bp):
CCTCCAAGTCCACCTCCCTTTCCTATTCCACCACCAAGGCCT
Found at i:80042375 original size:192 final size:192
Alignment explanation
Indices: 80042146--80042731 Score: 859
Period size: 192 Copynumber: 3.1 Consensus size: 192
80042136 CACTTCCAAG
* *
80042146 TCCACCACCATGTCCTCCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGGCCTCCTCCTT
1 TCCACCACCATGTCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTT
* * * *
80042211 TGCCAACACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCGAGGCCTCCTCCTTTGCCA
66 TTCCAACACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGACCACCTCCTTTGCCA
80042276 ATACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTAT
131 ATACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTAT
*
80042338 TCCACCACCATGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACCACCAAGGCCTCCTCCTT
1 TCCACCACCATGTCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTT
* * * *
80042403 TTCCAATACCACCTCCAAGTCCACCACCCTTTCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCA
66 TTCCAACACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGACCACCTCCTTTGCCA
*
80042468 ATACCACCTCCAAGTCCACCACCCTTTCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCTAT
131 ATACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTAT
* * * *
80042530 TCCACCACCATGTCCTCCTCCAAGTCCACCTCTCTTGCCAATCCCACCACCAAGGCCTCCACCTT
1 TCCACCACCATGTCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTT
* * * * * * * * * *
80042595 TTCCAATC-CCGCCGCCAAGGCCTCCACCCTTGCCAATCCCACCACCAAGACCCCCACCCTTGCC
66 TTCCAA-CACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGACCACCTCCTTTGCC
* * * * * * *
80042659 AATGCCACCACCAAGTCCACCACCCTTTCCAATGCCACCACCAAGTCCACCACCTTTACCAAT
130 AATACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTAT
80042722 TCCACCACCA
1 TCCACCACCA
80042732 AACCCTCCCC
Statistics
Matches: 355, Mismatches: 38, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
192 355 1.00
ACGTcount: A:0.21, C:0.49, G:0.06, T:0.23
Consensus pattern (192 bp):
TCCACCACCATGTCCTCCTCCAAGTCCACCTCCCTTTCCAATTCCACCACCAAGGCCTCCTCCTT
TTCCAACACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGACCACCTCCTTTGCCA
ATACCACCTCCAAGTCCACCACCCTTTCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTAT
Found at i:80042400 original size:30 final size:30
Alignment explanation
Indices: 80042354--80042550 Score: 241
Period size: 30 Copynumber: 6.6 Consensus size: 30
80042344 ACCATGTCCT
*
80042354 CCTCCAAGTCCACCTCCCTTTCCTATTCCA
1 CCTCCAAGTCCACCTCCCTTTCCAATTCCA
* * * * *
80042384 CCACCAAGGCCTCCTCCTTTTCCAATACCA
1 CCTCCAAGTCCACCTCCCTTTCCAATTCCA
* *
80042414 CCTCCAAGTCCACCACCCTTTCCAATTCCG
1 CCTCCAAGTCCACCTCCCTTTCCAATTCCA
* *
80042444 CCTCCAAGTCCACCTCCTTTTCCAATACCA
1 CCTCCAAGTCCACCTCCCTTTCCAATTCCA
* *
80042474 CCTCCAAGTCCACCACCCTTTCCAATTCCG
1 CCTCCAAGTCCACCTCCCTTTCCAATTCCA
* *
80042504 CCTCCAAGTCCACCTCCTTTTCCTATTCCA
1 CCTCCAAGTCCACCTCCCTTTCCAATTCCA
* * *
80042534 CCACCATGTCCTCCTCC
1 CCTCCAAGTCCACCTCC
80042551 AAGTCCACCT
Statistics
Matches: 139, Mismatches: 28, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 139 1.00
ACGTcount: A:0.19, C:0.49, G:0.05, T:0.26
Consensus pattern (30 bp):
CCTCCAAGTCCACCTCCCTTTCCAATTCCA
Found at i:80042480 original size:42 final size:42
Alignment explanation
Indices: 80042302--80042480 Score: 112
Period size: 42 Copynumber: 4.1 Consensus size: 42
80042292 CACCACCCTT
* * *
80042302 TCCAATTCCACCTCCAAGTCCACCTCCTTTTCCTATTCCACC
1 TCCAATTCCTCCTCCAAGTCCACCTCCTTTTCCAATACCACC
* * * *
80042344 ACC-ATGTCCTCCTCCAAGTCCACCTCCCTTTCCTATTCCACC
1 TCCAAT-TCCTCCTCCAAGTCCACCTCCTTTTCCAATACCACC
* * *** ** *
80042386 ACCAAGGCCTCCTCCTTTTCCAA-TACCACCTCCAAGTCCACCACC-CTT
1 TCCAA---TTCCTCC---TCCAAGT-CCACCTCCTTTTCCAATACCAC-C
*
80042434 TCCAATTCCGCCTCCAAGTCCACCTCCTTTTCCAATACCACC
1 TCCAATTCCTCCTCCAAGTCCACCTCCTTTTCCAATACCACC
80042476 TCCAA
1 TCCAA
80042481 GTCCACCACC
Statistics
Matches: 104, Mismatches: 21, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
41 2 0.02
42 64 0.62
43 3 0.03
45 11 0.11
47 2 0.02
48 22 0.21
ACGTcount: A:0.21, C:0.48, G:0.04, T:0.27
Consensus pattern (42 bp):
TCCAATTCCTCCTCCAAGTCCACCTCCTTTTCCAATACCACC
Found at i:80042589 original size:42 final size:42
Alignment explanation
Indices: 80042504--80042589 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 42
80042494 TCCAATTCCG
* * * * *
80042504 CCTCCAAGTCCACCTCCTTTTCCTATTCCACCACCATGTCCT
1 CCTCCAAGTCCACCTCCTTTGCCAATCCCACCACCAAGGCCT
80042546 CCTCCAAGTCCACCT-CTCTTGCCAATCCCACCACCAAGGCCT
1 CCTCCAAGTCCACCTCCT-TTGCCAATCCCACCACCAAGGCCT
80042588 CC
1 CC
80042590 ACCTTTTCCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
41 2 0.05
42 36 0.95
ACGTcount: A:0.19, C:0.50, G:0.07, T:0.24
Consensus pattern (42 bp):
CCTCCAAGTCCACCTCCTTTGCCAATCCCACCACCAAGGCCT
Done.