Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 256 of 259
Found at i:80509603 original size:30 final size:30
Alignment explanation
Indices: 80509569--80509628 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
80509559 ACTTAACAAG
*
80509569 CAAATGCTTTTAAAATAATAAAAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
*
80509599 CAAATGCCTTTAAAATAATAAGAAAATTAA
1 CAAATGCCTTTAAAATAATAAAAAAATTAA
80509629 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.08, G:0.05, T:0.28
Consensus pattern (30 bp):
CAAATGCCTTTAAAATAATAAAAAAATTAA
Found at i:80510432 original size:21 final size:22
Alignment explanation
Indices: 80510403--80510445 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
80510393 TTTGAAAATC
*
80510403 TTTATTTTTTTAT-ATAATTTT
1 TTTACTTTTTTATGATAATTTT
*
80510424 TTTACTTTTTTATGATTATTTT
1 TTTACTTTTTTATGATAATTTT
80510446 ATCTAGTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTACTTTTTTATGATAATTTT
Found at i:80510445 original size:19 final size:20
Alignment explanation
Indices: 80510409--80510446 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
80510399 AATCTTTATT
*
80510409 TTTTTATATAATTTTTTTAC
1 TTTTTATATAATTATTTTAC
*
80510429 TTTTT-TATGATTATTTTA
1 TTTTTATATAATTATTTTA
80510447 TCTAGTCATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (20 bp):
TTTTTATATAATTATTTTAC
Found at i:80517697 original size:16 final size:18
Alignment explanation
Indices: 80517665--80517697 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
80517655 ATTAATAAAA
80517665 TAAATTTAGTGTTAATTG
1 TAAATTTAGTGTTAATTG
80517683 TAAATTT-GT-TTAATT
1 TAAATTTAGTGTTAATT
80517698 TTACGTCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (18 bp):
TAAATTTAGTGTTAATTG
Found at i:80523583 original size:16 final size:16
Alignment explanation
Indices: 80523562--80523627 Score: 114
Period size: 16 Copynumber: 4.1 Consensus size: 16
80523552 TGGTTCGCTC
80523562 TATTGGATTAGAGGTG
1 TATTGGATTAGAGGTG
80523578 TATTGGATTAGAGGTG
1 TATTGGATTAGAGGTG
*
80523594 TAATGGATTAGAGGTG
1 TATTGGATTAGAGGTG
*
80523610 TATTGGAATAGAGGTG
1 TATTGGATTAGAGGTG
80523626 TA
1 TA
80523628 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.35
Consensus pattern (16 bp):
TATTGGATTAGAGGTG
Found at i:80523667 original size:45 final size:41
Alignment explanation
Indices: 80523608--80523717 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
80523598 GGATTAGAGG
*
80523608 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
80523650 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
80523693 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
80523718 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:80523881 original size:16 final size:16
Alignment explanation
Indices: 80523844--80523885 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
80523834 TTAATCATAT
*
80523844 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
80523860 TT-AAATATATTATAA
1 TTAAAATATATTATAA
80523875 TTAAAATATAT
1 TTAAAATATAT
80523886 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:80523892 original size:14 final size:15
Alignment explanation
Indices: 80523853--80523894 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
80523843 TTTAAACATA
*
80523853 ATTATTATTAAATAT
1 ATTATAATTAAATAT
80523868 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
80523882 A-TATAATTTAATA
1 ATTATAATTAAATA
80523895 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:80523986 original size:120 final size:121
Alignment explanation
Indices: 80523842--80524110 Score: 456
Period size: 120 Copynumber: 2.2 Consensus size: 121
80523832 ATTTAATCAT
80523842 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
*
80523907 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAA-GATA
66 ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATG-TA
80523963 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
* *
80524027 ATTAATATTCTTATATGAATTTATTAAAATCATAATATATGATACTATAAAATGTA
66 ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATGTA
* *
80524083 ATTTGAA-ATAATTAATATTAAATA-ATTA
1 ATTTAAACATAATTATTATTAAATATATTA
80524111 ATGTTGACAA
Statistics
Matches: 142, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
119 4 0.03
120 131 0.92
121 7 0.05
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.43
Consensus pattern (121 bp):
ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
ATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATGTA
Found at i:80524003 original size:16 final size:16
Alignment explanation
Indices: 80523960--80524005 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
80523950 ACTATAAAAG
*
80523960 ATAATTTAACATA-ATT
1 ATAA-TTAAAATATATT
*
80523976 ATTATT-AAATATATT
1 ATAATTAAAATATATT
80523991 ATAATTAAAATATAT
1 ATAATTAAAATATAT
80524006 AATTTAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 4 0.16
15 10 0.40
16 11 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATTAAAATATATT
Found at i:80524012 original size:14 final size:15
Alignment explanation
Indices: 80523960--80524014 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
80523950 ACTATAAAAG
80523960 ATAATTTAACATA-ATT
1 ATAA-TTAA-ATATATT
*
80523976 ATTATTAAATATATT
1 ATAATTAAATATATT
80523991 ATAATTAAA-ATA-T
1 ATAATTAAATATATT
*
80524004 ATAATTTAATA
1 ATAATTAAATA
80524015 AAATTCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
13 9 0.26
14 7 0.21
15 15 0.44
16 3 0.09
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAATTAAATATATT
Found at i:80524077 original size:61 final size:61
Alignment explanation
Indices: 80523892--80524079 Score: 181
Period size: 61 Copynumber: 3.1 Consensus size: 61
80523882 ATATAATTTA
* * *
80523892 ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTATTAAAATCATAATATATGATACT
** * * * * * * * *
80523953 ATAAAA--GATAAT--TTAACATAATTATTAT-TAAATATATTATAATTAAAATATATAAT-TT
1 ATAAAATTCTTAATAATT-A-AT-ATTCTTATATGAATTTATTAAAATCATAATATATGATACT
80524011 AATAAAATTCTTAATAATTAATATTCTTATATGAATTTATTAAAATCATAATATATGATACT
1 -ATAAAATTCTTAATAATTAATATTCTTATATGAATTTATTAAAATCATAATATATGATACT
80524073 ATAAAAT
1 ATAAAAT
80524080 GTAATTTGAA
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
57 1 0.01
58 2 0.02
59 32 0.34
60 14 0.15
61 41 0.44
62 2 0.02
63 2 0.02
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.42
Consensus pattern (61 bp):
ATAAAATTCTTAATAATTAATATTCTTATATGAATTTATTAAAATCATAATATATGATACT
Found at i:80529122 original size:16 final size:16
Alignment explanation
Indices: 80529089--80529122 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80529079 TGGAGATGTT
* *
80529089 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
80529105 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
80529121 AA
1 AA
80529123 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:80531957 original size:21 final size:21
Alignment explanation
Indices: 80531923--80531963 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
80531913 AGACGAGCAA
* *
80531923 TACTCCACAGCAGGTAGAGTG
1 TACTCCAAAACAGGTAGAGTG
*
80531944 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTAGAGT
80531964 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:80533902 original size:16 final size:16
Alignment explanation
Indices: 80533869--80533902 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
80533859 GGAGATTGTT
* *
80533869 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
80533885 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
80533901 AA
1 AA
80533903 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:80536856 original size:73 final size:73
Alignment explanation
Indices: 80536742--80536877 Score: 202
Period size: 73 Copynumber: 1.9 Consensus size: 73
80536732 TATATATTCG
* * * *
80536742 ATATTCGATTTTGAGTGTCTTCTTCCATGAATTTTAAGGATCTTTGGAGGGCCGTATCTCAATGA
1 ATATCCGATTTCGAGTATCTTCTTCCATGAATTTTAAGGATCTTTGGAGGGCCATATCTCAATGA
80536807 GGGTATAT
66 GGGTATAT
* *
80536815 ATATCCGATTTCGAGTATGTTCTTCC-TAGAATTTTAAGGATCTTTGGAGGGTCATATCTCAAT
1 ATATCCGATTTCGAGTATCTTCTTCCAT-GAATTTTAAGGATCTTTGGAGGGCCATATCTCAAT
80536878 ATACGAACAC
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
72 1 0.02
73 55 0.98
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (73 bp):
ATATCCGATTTCGAGTATCTTCTTCCATGAATTTTAAGGATCTTTGGAGGGCCATATCTCAATGA
GGGTATAT
Found at i:80561201 original size:9 final size:9
Alignment explanation
Indices: 80561172--80561201 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
80561162 ATATTATTAA
80561172 TTTATATAT
1 TTTATATAT
*
80561181 TTAATATAT
1 TTTATATAT
80561190 TTTATATAT
1 TTTATATAT
80561199 TTT
1 TTT
80561202 GATTGAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (9 bp):
TTTATATAT
Found at i:80568936 original size:13 final size:13
Alignment explanation
Indices: 80568918--80568943 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80568908 CAAATTGAAC
80568918 AAAGTTTTGCTTG
1 AAAGTTTTGCTTG
80568931 AAAGTTTTGCTTG
1 AAAGTTTTGCTTG
80568944 TTGATAGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (13 bp):
AAAGTTTTGCTTG
Found at i:80579456 original size:5 final size:6
Alignment explanation
Indices: 80579443--80579494 Score: 68
Period size: 6 Copynumber: 8.3 Consensus size: 6
80579433 ATAATTTAAT
* *
80579443 AAATAA AAATAA AAATCTAA AACTAA AACTAA AAATAA AAATAA AAATAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAATAA AAATAA
80579493 AA
1 AA
80579495 CATATAATTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 37 0.88
8 5 0.12
ACGTcount: A:0.77, C:0.06, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:80579551 original size:27 final size:27
Alignment explanation
Indices: 80579513--80579564 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
80579503 TTTATACAAA
* *
80579513 TAATTTGGTTAATTTGAGTAATTCGGG
1 TAATTTGATTAATTCGAGTAATTCGGG
*
80579540 TAATTTGATTAATTCGATTAATTCG
1 TAATTTGATTAATTCGAGTAATTCG
80579565 ATTAATTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (27 bp):
TAATTTGATTAATTCGAGTAATTCGGG
Found at i:80579558 original size:9 final size:9
Alignment explanation
Indices: 80579521--80579571 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
80579511 AATAATTTGG
*
80579521 TTAATTTGA
1 TTAATTCGA
* *
80579530 GTAATTCGG
1 TTAATTCGA
* *
80579539 GTAATTTGA
1 TTAATTCGA
80579548 TTAATTCGA
1 TTAATTCGA
80579557 TTAATTCGA
1 TTAATTCGA
80579566 TTAATT
1 TTAATT
80579572 AAGTTTATTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (9 bp):
TTAATTCGA
Found at i:80579561 original size:18 final size:18
Alignment explanation
Indices: 80579521--80579571 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
80579511 AATAATTTGG
* *
80579521 TTAATTTGAGTAATTCGG
1 TTAATTTGATTAATTCGA
*
80579539 GTAATTTGATTAATTCGA
1 TTAATTTGATTAATTCGA
*
80579557 TTAATTCGATTAATT
1 TTAATTTGATTAATT
80579572 AAGTTTATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.31, C:0.06, G:0.16, T:0.47
Consensus pattern (18 bp):
TTAATTTGATTAATTCGA
Found at i:80579570 original size:27 final size:27
Alignment explanation
Indices: 80579513--80579571 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
80579503 TTTATACAAA
* * *
80579513 TAATTTGGTTAATTTGAGTAATTCGGG
1 TAATTTGATTAATTCGAGTAATTCGAG
* *
80579540 TAATTTGATTAATTCGATTAATTCGAT
1 TAATTTGATTAATTCGAGTAATTCGAG
80579567 TAATT
1 TAATT
80579572 AAGTTTATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.31, C:0.05, G:0.17, T:0.47
Consensus pattern (27 bp):
TAATTTGATTAATTCGAGTAATTCGAG
Found at i:80580490 original size:4 final size:4
Alignment explanation
Indices: 80580483--80580519 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
80580473 TCGTTCCTAT
80580483 CATA CATA CATA CATA CATA CATA CATA CATA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA C
80580520 TATGTTTTTG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (4 bp):
CATA
Found at i:80584266 original size:31 final size:30
Alignment explanation
Indices: 80584206--80584266 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80584196 TTTCCGAGTC
* *
80584206 TAGGGGTAAAATCGTAATTCTGCAAAGTTT
1 TAGGGGCAAAATCGTAATTCTCCAAAGTTT
* *
80584236 TAGGGGCAAAATTGTAATTTTACCAAAGTTT
1 TAGGGGCAAAATCGTAATTCT-CCAAAGTTT
80584267 GAGTTAGAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (30 bp):
TAGGGGCAAAATCGTAATTCTCCAAAGTTT
Found at i:80584723 original size:12 final size:13
Alignment explanation
Indices: 80584691--80584728 Score: 51
Period size: 12 Copynumber: 2.9 Consensus size: 13
80584681 GAGTAGCATT
*
80584691 TTATTGTTATGCAG
1 TTATTGTTAT-TAG
80584705 TTATTGTTATTAG
1 TTATTGTTATTAG
80584718 -TATTGTTATTA
1 TTATTGTTATTA
80584729 TTGAGTTATG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 11 0.48
13 2 0.09
14 10 0.43
ACGTcount: A:0.24, C:0.03, G:0.16, T:0.58
Consensus pattern (13 bp):
TTATTGTTATTAG
Found at i:80585010 original size:47 final size:47
Alignment explanation
Indices: 80584890--80585050 Score: 168
Period size: 45 Copynumber: 3.4 Consensus size: 47
80584880 GAATTGACGG
* *
80584890 TTAAGGATACCATGTAAGACCATATCAAGACATGGCATTGGTA-AG-
1 TTAAGGATACCATGTAAGACCATATCAAGACATGGCATTGGCATTGA
** * * * * *
80584935 GCAAGGATCCCGTCTAAGACCATGTCAAGACATGGCATCGGCATTGA
1 TTAAGGATACCATGTAAGACCATATCAAGACATGGCATTGGCATTGA
* *
80584982 TTAAGGACT-CCATGTAAGACCACATCAAGACGTGGCATTGGCACTATGA
1 TTAAGGA-TACCATGTAAGACCATATCAAGACATGGCATTGGCA-T-TGA
80585031 -TAAGGATACCATGTAAGACC
1 TTAAGGATACCATGTAAGACC
80585051 TTGTTTGGAA
Statistics
Matches: 93, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
45 35 0.38
46 1 0.01
47 34 0.37
48 20 0.22
49 3 0.03
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (47 bp):
TTAAGGATACCATGTAAGACCATATCAAGACATGGCATTGGCATTGA
Found at i:80585091 original size:47 final size:47
Alignment explanation
Indices: 80585032--80585147 Score: 196
Period size: 47 Copynumber: 2.5 Consensus size: 47
80585022 GCACTATGAT
*
80585032 AAGGATACCATGTAAGACCTTGTTTGGAACATGGCATTTGGTAAGAC
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
* *
80585079 AAGGATGCCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAT
1 AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
*
80585126 AAGGATATCATGTAAGACCATG
1 AAGGATACCATGTAAGACCATG
80585148 CCAAGGCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 64 1.00
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.27
Consensus pattern (47 bp):
AAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGGTAAGAC
Found at i:80585191 original size:54 final size:54
Alignment explanation
Indices: 80585126--80585441 Score: 350
Period size: 54 Copynumber: 5.8 Consensus size: 54
80585116 TTGGTAAGAT
*
80585126 AAGGATATCATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * *
80585180 AAGGAAATCATGAAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
** *
80585235 AAAGG-TCCCATGTAAGACCATGCTAAGGCATGGCATTGATAAGTTCTATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * *
80585289 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT-CTATAAGGC
* * * *
80585344 AAAGG-TCTCATGTAAAACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
* * * * ** * * *
80585397 AATGATACCACGCAAGACCATATCAAGACATGGCAATGGTAAGTT
1 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTT
80585442 TAAAAAGGAA
Statistics
Matches: 218, Mismatches: 38, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
52 3 0.01
53 41 0.19
54 83 0.38
55 83 0.38
56 8 0.04
ACGTcount: A:0.37, C:0.17, G:0.23, T:0.23
Consensus pattern (54 bp):
AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGC
Found at i:80585325 original size:109 final size:109
Alignment explanation
Indices: 80585134--80585441 Score: 465
Period size: 109 Copynumber: 2.8 Consensus size: 109
80585124 ATAAGGATAT
*
80585134 CATGTAAGACCATGCCAAGGCATGACATTGATAAGTTCTATAAGGCAAGGAAATCATGAAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGAAAGACC
*
80585199 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
* *
80585243 CATGTAAGACCATGCTAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGAAAGACC
*
80585308 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCT
66 ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
* * * * * * * *
80585352 CATGTAAAACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAATGATACCACGCAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGAAAGACC
* * *
80585416 ATATCAAGACATGGCAATGGTAAGTT
66 ATGTCAAGACATGGCATTGATAAGTT
80585442 TAAAAAGGAA
Statistics
Matches: 182, Mismatches: 17, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
108 44 0.24
109 138 0.76
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (109 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAATCATGAAAGACC
ATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCC
Found at i:80589692 original size:93 final size:93
Alignment explanation
Indices: 80589580--80589751 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
80589570 GCCCATAAGT
* * *
80589580 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGTCTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80589645 CGAGTTCGGATGCCTAGTTACATCTCTC
66 CGAGTTCGGATGCCTAGTTACATCTCTC
*
80589673 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80589738 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
80589752 CAAACATCTT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCTC
Found at i:80589747 original size:46 final size:46
Alignment explanation
Indices: 80589572--80589747 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
80589562 TGTAACCCGC
* * *
80589572 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
80589618 CCATAAGTGAACTCGGTCTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
80589664 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
80589711 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80589748 TGCCCAAACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 68 0.62
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80592158 original size:15 final size:15
Alignment explanation
Indices: 80592129--80592178 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
80592119 CAAAGATAAC
*
80592129 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
*
80592143 AAGAAATCTAGAATA
1 AAGAAATCCAGAATA
* *
80592158 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
80592173 AAGAAA
1 AAGAAA
80592179 CCTAAGATAC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
14 7 0.24
15 22 0.76
ACGTcount: A:0.60, C:0.10, G:0.18, T:0.12
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:80595240 original size:93 final size:93
Alignment explanation
Indices: 80595128--80595299 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
80595118 GACCATAAGT
* * *
80595128 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGTCTCAACTCA
1 GAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
80595192 ACGAGTTCGGATGCCTAGTTACATCTCTC
65 ACAAGTTCGGATGCCTAGTTACATCTCTC
80595221 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
80595286 CAAGTTCGGATGCC
66 CAAGTTCGGATGCC
80595300 CAAACATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCTC
Found at i:80595295 original size:46 final size:46
Alignment explanation
Indices: 80595120--80595295 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
80595110 TGTAACCCGA
* *
80595120 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCGCAT
* *
80595166 CCATAAGTGAACTCGGTCTCAACTCAACGAGTTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGC-A--T
* ***
80595212 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
80595259 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
80595296 TGCCCAAACA
Statistics
Matches: 108, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 65 0.60
47 32 0.30
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:80601958 original size:22 final size:22
Alignment explanation
Indices: 80601932--80601978 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
80601922 TGCACCAGAA
*
80601932 TTTAAAGAAAATTATGATTAAT
1 TTTAAAGAAAATTATAATTAAT
* * *
80601954 TTTAAATAAATTTATAATTTAT
1 TTTAAAGAAAATTATAATTAAT
80601976 TTT
1 TTT
80601979 TTTGAATTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
TTTAAAGAAAATTATAATTAAT
Found at i:80618968 original size:14 final size:15
Alignment explanation
Indices: 80618942--80618981 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
80618932 TTAAGAATTT
*
80618942 TATTAAATT-ATATA
1 TATTTAATTAATATA
80618956 T-TTTAATTAATATA
1 TATTTAATTAATATA
80618970 TATTTAA-TAATA
1 TATTTAATTAATA
80618982 ATTATGTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 6 0.26
14 12 0.52
15 5 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTTAATTAATATA
Found at i:80618971 original size:18 final size:17
Alignment explanation
Indices: 80618907--80618974 Score: 67
Period size: 16 Copynumber: 4.2 Consensus size: 17
80618897 GAAATTGAGA
80618907 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
80618924 A-TTTATT--ATTA-AGA
1 ATTTTATTAAATTATA-T
80618938 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
80618955 ATTTTAATT-AA-TATAT
1 ATTTT-ATTAAATTATAT
80618971 ATTT
1 ATTT
80618975 AATAATAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 13
0.74 0.03 0.22
Matches are distributed among these distances:
13 1 0.02
14 5 0.12
15 6 0.14
16 15 0.35
17 12 0.28
18 4 0.09
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:80621163 original size:59 final size:58
Alignment explanation
Indices: 80620983--80621266 Score: 150
Period size: 59 Copynumber: 4.7 Consensus size: 58
80620973 ATGATAAATT
* ** * *
80620983 ATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATT
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAATTATATTTTATAGTATC
* * * * * * * *
80621042 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTTAATATTAAGAATTTTATTA-AATC
1 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTAA-ATT-A-TATTTTA-TAGTATC
80621103 ATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTATAGTATC
1 ATATATTTTAATTAAAATATATTTAATATTAATTATTT-AAATTATATTTTATAGTATC
* * ** * * * *
80621162 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATT-T-TATTATA-AAT
1 ATATATT-TTAATT-A--AAA-T-ATAT-TTAATATTAATTATTTA-AATTATATTTTATAGTAT
*
80621224 T
58 C
*
80621225 ATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATATATTTTAATTAAAATATATTTAATATTAATTAT-TTAAA
80621267 ATATGATTAA
Statistics
Matches: 167, Mismatches: 37, Indels: 45
0.67 0.15 0.18
Matches are distributed among these distances:
56 12 0.07
57 6 0.04
58 13 0.08
59 39 0.23
60 11 0.07
61 30 0.18
62 15 0.09
63 12 0.07
64 7 0.04
65 6 0.04
66 16 0.10
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (58 bp):
ATATATTTTAATTAAAATATATTTAATATTAATTATTTAAATTATATTTTATAGTATC
Found at i:80621190 original size:120 final size:122
Alignment explanation
Indices: 80620976--80621266 Score: 462
Period size: 120 Copynumber: 2.4 Consensus size: 122
80620966 TAGTATGATG
* **
80620976 ATAAATTATATATTTTTATTAACTTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
80621041 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTA-T
66 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
* *
80621097 -TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTA
* *
80621160 TCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATT
65 TCATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
80621218 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
80621267 ATATGATTAA
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
119 2 0.01
120 106 0.69
121 1 0.01
122 43 0.28
123 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (122 bp):
ATAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATT
Found at i:80621245 original size:18 final size:19
Alignment explanation
Indices: 80621210--80621246 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
80621200 ATTATTAAGA
80621210 ATTTTATTATAAATTATAT
1 ATTTTATTATAAATTATAT
80621229 ATTTTAATTA-AAA-TATAT
1 ATTTT-ATTATAAATTATAT
80621247 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
ATTTTATTATAAATTATAT
Found at i:80621476 original size:44 final size:45
Alignment explanation
Indices: 80621411--80621501 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
80621401 ACCTCTATTC
* * *
80621411 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
80621455 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
80621500 CA
1 CA
80621502 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:80621518 original size:17 final size:16
Alignment explanation
Indices: 80621482--80621534 Score: 97
Period size: 16 Copynumber: 3.2 Consensus size: 16
80621472 GATTAGCTAT
80621482 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
80621498 TACACCTCTAATCCTAA
1 TACACCTCTAATCC-AA
80621515 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
80621531 TACA
1 TACA
80621535 GCGAACCAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
16 20 0.56
17 16 0.44
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:80623128 original size:7 final size:7
Alignment explanation
Indices: 80623116--80623140 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
80623106 GGGTACATTG
80623116 GAAATGA
1 GAAATGA
80623123 GAAATGA
1 GAAATGA
80623130 GAAATGA
1 GAAATGA
80623137 GAAA
1 GAAA
80623141 AGGGAGGGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.00, G:0.28, T:0.12
Consensus pattern (7 bp):
GAAATGA
Found at i:80630886 original size:133 final size:131
Alignment explanation
Indices: 80630726--80630996 Score: 348
Period size: 133 Copynumber: 2.1 Consensus size: 131
80630716 GATTAAATCA
* * * *
80630726 TTTT-TCTCGATTATTTTGATTTTTGTCATATGAATTTGATACTCAAATTTAAATAAATTAAAAT
1 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAATTCGATACTCAAATTTAAATAAATTAAAAT
* * * * *
80630790 GAATTGTCTTT-GTCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTTGGATTGAATCA
66 GAACTGT-TTTCATCATTCTAAGTTTGTGATACA-TTTTTTT-ATGTCAGTTTCGAATTGAATCA
80630854 TTTT
128 TTTT
* * * * *
80630858 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAGTTCGATACTCAAATTTGAATCATTTTAAAT
1 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAATTCGATACTCAAATTTAAATAAATTAAAAT
* * *
80630923 TAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCGGTTTCGAATTGAGTCATTT
66 GAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCAGTTTCGAATTGAATCATTT
80630988 T
131 T
80630989 TTTTCTCT
1 TTTTCTCT
80630997 AAATAATATA
Statistics
Matches: 120, Mismatches: 17, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
131 29 0.24
132 14 0.12
133 77 0.64
ACGTcount: A:0.25, C:0.11, G:0.13, T:0.51
Consensus pattern (131 bp):
TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAATTCGATACTCAAATTTAAATAAATTAAAAT
GAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCAGTTTCGAATTGAATCATTT
T
Found at i:80631206 original size:215 final size:220
Alignment explanation
Indices: 80630793--80631209 Score: 578
Period size: 215 Copynumber: 1.9 Consensus size: 220
80630783 TTAAAATGAA
** * ** *
80630793 TTGTCTTTGTCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTTGGATTGAATCATTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTT-ATGCCAGTTTCGGATTGAATCA-TTT
* * * *
80630858 TTTTCTCTCGATTATGTCGAGTTTTGTCATATGAGTTCGATACTCAAATTTGAATCATTTTAAAT
64 TTTTCTCTCGATAATATCGAATTTTGTCATATGAGTTCGATACTCAAATTTGAATCATTTGAAAT
* * ** *
80630923 TAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCGGTTTCGAATTGAGTCATTT
129 TAACTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTTCGAATTGAATCATTT
80630988 TTTTTCTCTAAATAATATAATGTTTTG
194 TTTTTCTCTAAATAATATAATGTTTTG
80631015 TTGTCTTCATCATTCTAAGTTTGGGATACA-TTTTTTT-TGCCAGTTTCGGATTGAATCA-TTTT
1 TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTTATGCCAGTTTCGGATTGAATCATTTTT
* *
80631077 TTC-CT-GATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAATTATTTGAAATTA
66 TTCTCTCGATAATATCGAATTTTGTCATATGAGTTCGATACTCAAATTTGAATCATTTGAAATTA
* * *
80631140 ACTGTTTT-GTCCTTCTAAGTTTGGGATACATTTTTTAATGTCAA-TTCTGGATTGAATCATTTT
131 ACTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTTC-GAATTGAATCATTTT
80631203 TTTTCTC
195 TTTTCTC
80631210 GTTAATATAA
Statistics
Matches: 174, Mismatches: 20, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
213 3 0.02
214 50 0.29
215 60 0.34
216 2 0.01
217 7 0.04
219 18 0.10
221 7 0.04
222 27 0.16
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.50
Consensus pattern (220 bp):
TTGTCTTCATCATTCTAAGTTTGGGATACATTTTTTTTATGCCAGTTTCGGATTGAATCATTTTT
TTCTCTCGATAATATCGAATTTTGTCATATGAGTTCGATACTCAAATTTGAATCATTTGAAATTA
ACTGTTTTCATCATTCTAAGTTTGGGATACATTTTTTAATGTCAATTTCGAATTGAATCATTTTT
TTTCTCTAAATAATATAATGTTTTG
Found at i:80631373 original size:471 final size:474
Alignment explanation
Indices: 80630583--80631482 Score: 1051
Period size: 471 Copynumber: 1.9 Consensus size: 474
80630573 AACATTATGT
* * *
80630583 CAGTTTCGGATTCATTCAATTTTTTCTCGATAATATCGAGTTTTATCATATGAGTTTAATATTCA
1 CAGTTTCGGATTCAATCAATTTTTTCTCGATAATATCGAATTTTATCATATGAGTTTAATACTCA
* * * * ** *
80630648 AATTTGAATTATTTGAAATTAATTGTTTTCGTCGTTTTGAGTTTGAGTTTTTTTTTTGGTCAGTT
66 AATTTGAATTATTTGAAATTAACTGTTTTCGTCCTTCTAAGTTTGAGTTTTTTTAATGGTCAATT
* ** * *
80630713 TCAGATTAAATCATTTTTCTCGATTATTTTGATTTTTGTCATATGAATTTGATACTCAAATTTAA
131 TCAGATTAAATCATTTTTCTCGATTATATAAAGTTTTGTCATACGAATTTGATACTCAAATTTAA
* * *
80630778 ATAAATTAAAATGAATTGTCTTTGTCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTT
196 ATAAATTAAAATGAATTCTCTTTATCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTA
* * * * *
80630843 GGATTGAATCATTTTTTTTCTCTCGATTATGTCGAGTTTTGTCATATGAGTTCGATACTCAAATT
261 AGATTGAATCATATTTTTTCTCTCGATAATATCGAGTTTTGTCATATGAGTTCGATACTCAAATC
* * * * *
80630908 TGAATCA-T-TTT-AAATTAACTGTTTTCATCATTCTAAGTTTGTGATACATTTTTTTATGTCGG
326 TAAATCATTATTTGAAATTAACTGTCTTCATCATTCTAAATTTGGGATACATTTTTTTATATCGG
* *
80630970 TTTCGAATTGAGTCATTTTTTTTCTCTAAATAATATAATGTTTTGTTGTCTTCATCATTCTAAGT
391 TTTCAAATTGAATCA-TTTTTTTCTCTAAATAATATAATGTTTTGTTGTCTTCATCATTCTAAGT
80631035 TTGGGATACATTTTTTTTGC
455 TTGGGATACATTTTTTTTGC
* * *
80631055 CAGTTTCGGATTGAATC-ATTTTTTC-CTGATAATATCGAATTTTGTCATATGAGTTTGATACTC
1 CAGTTTCGGATTCAATCAATTTTTTCTC-GATAATATCGAATTTTATCATATGAGTTTAATACTC
*
80631118 AAATTTGAATTATTTGAAATTAACTGTTTT-GTCCTTCTAAGTTTGGGATACATTTTTTAAT-GT
65 AAATTTGAATTATTTGAAATTAACTGTTTTCGTCCTTCTAAGTTTGAG-T---TTTTTTAATGGT
* * * *
80631181 CAA-TTCTGGATTGAATCATTTTTTTTCTCG-TTAATATAAAGTTTTGTCATACGAGTTTGATAT
126 CAATTTC-AGATTAAATCA---TTTTTCTCGATT-ATATAAAGTTTTGTCATACGAATTTGATAC
* * * * *
80631244 TCGAATTTGAATAATTTGAAATTAATTCTCTTTCATCATTCTAAGTTTG-GAATACA-TTTTTTT
186 TCAAATTTAAATAAATTAAAATGAATTCTCTTT-ATCATTCTAAGTTTGTG-ATACATTTTTTTT
* * *
80631307 -ATGTTGGTTTCAAG-TT-AAT-A-ATTTTTTC-CTCTATAATATTGAGTTTTGTCATATGAGTT
249 AATGTTAGTTT-AAGATTGAATCATATTTTTTCTCTCGATAATATCGAGTTTTGTCATATGAGTT
* ** *
80631366 TGATACTCAAATCTAAATCATTTGAAATTTGAAATTATTTGTCTTCATTATTCTAAATTTGGGAT
313 CGATACTCAAATCTAAATCA-TT---ATTTGAAATTAACTGTCTTCATCATTCTAAATTTGGGAT
**
80631431 ACATTTTTTTATATCGGTTTCAAATTGAATCATTTTTTTCTCTCGATAATAT
374 ACATTTTTTTATATCGGTTTCAAATTGAATCATTTTTTTCTCTAAATAATAT
80631483 CGAGTTTTGT
Statistics
Matches: 356, Mismatches: 52, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
470 14 0.04
471 114 0.32
472 25 0.07
473 15 0.04
474 10 0.03
475 13 0.04
476 68 0.19
477 40 0.11
478 57 0.16
ACGTcount: A:0.27, C:0.11, G:0.13, T:0.49
Consensus pattern (474 bp):
CAGTTTCGGATTCAATCAATTTTTTCTCGATAATATCGAATTTTATCATATGAGTTTAATACTCA
AATTTGAATTATTTGAAATTAACTGTTTTCGTCCTTCTAAGTTTGAGTTTTTTTAATGGTCAATT
TCAGATTAAATCATTTTTCTCGATTATATAAAGTTTTGTCATACGAATTTGATACTCAAATTTAA
ATAAATTAAAATGAATTCTCTTTATCATTCTAAGTTTGTGATACATTTTTTTTAATGTTAGTTTA
AGATTGAATCATATTTTTTCTCTCGATAATATCGAGTTTTGTCATATGAGTTCGATACTCAAATC
TAAATCATTATTTGAAATTAACTGTCTTCATCATTCTAAATTTGGGATACATTTTTTTATATCGG
TTTCAAATTGAATCATTTTTTTCTCTAAATAATATAATGTTTTGTTGTCTTCATCATTCTAAGTT
TGGGATACATTTTTTTTGC
Found at i:80631392 original size:256 final size:258
Alignment explanation
Indices: 80631015--80631909 Score: 970
Period size: 256 Copynumber: 3.5 Consensus size: 258
80631005 TAATGTTTTG
* * * *
80631015 TTGTC-TTCATCATTCTAAGTTTGGGATACA-TTTTTTT-TGCCAGTTTCGGATTGAATCATTTT
1 TTGTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCGGATTGAATAATTTT
* * * *
80631077 TTCCT-GATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAATTATTTGAAATTAA
66 TTCCTCTATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTGAAATTAA
*
80631141 CTGT-TTTGTCCTTCTAAGTTTGGGATACATTTTTTAATGTCAA-TTCTGGATTGAATCATTTTT
131 ATGTATTTGTCCTTCTAAGTTTGGGATACATTTTTTAATGTCAATTTC-GGATTGAATCATTTTT
* *
80631204 TTTCTCGTTAATATAAAGTTTTGTCATACGAGTTTGATATTCGAATTTGAATAATTTGAAATTAA
195 TTTCTCGATAATATCAAGTTTTGTCATACGAGTTTGATATT-GAATTTGAATAATTTGAAATTAA
* * *
80631269 TTCTCTTTCATCATTCTAAGTTTGGAATACA-TTTTTTTATGTTGGTTTC-AAGTT-AATAATTT
1 TTGTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCGGA-TTGAATAATTT
* * *
80631331 TTTCCTCTATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATCTAAATCATTTGAAATTT
65 TTTCCTCTATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTGAAA-TT
* * * ** **
80631396 GAAAT-TATTTGTCTTCATTATTCTAAATTTGGGATACATTTTTTTATATCGGTTTCAAATTGAA
129 -AAATGTATTTGTC--C----TTCTAAGTTTGGGATACATTTTTTAATGTCAATTTCGGATTGAA
* * *
80631460 TCATTTTTTTCTCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTTGAATTTGAATAAAT
187 TCATTTTTTT-TCTCGATAATATCAAGTTTTGTCATACGAGTTTGATA-TTGAATTTGAAT-AAT
80631525 TTGAAATTAGA
249 TTGAAATTA-A
* * *
80631536 -TGTC-TTCGTCATTCTAAATTTGGAATACATTTTTTTTATGTCGGTTTCGGGTTGAATAA-TTT
1 TTGTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCGGATTGAATAATTTT
** *
80631598 TTCCTCTATAATATTGAGTTTTGTTGTATGAGTTTGATACTCGAATTTGAATAATTTGAAATTAA
66 TTCCTCTATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTGAAATTAA
* * * * * *
80631663 TTGTCTTTGTCATTCTAAGTTT-GGATTACATTTTTTGATGTCACTTTCGGATTAAATCA--TTT
131 ATGTATTTGTCCTTCTAAGTTTGGGA-TACATTTTTTAATGTCAATTTCGGATTGAATCATTTTT
* * * * * *
80631725 TTTCTTGACAATATCTAGTTTTGTTATACAAGTTTGATATTTGAATAT-AAGT-ATTTGAAATTA
195 TTTCTCGATAATATCAAGTTTTGTCATACGAGTTTGATA-TTGAATTTGAA-TAATTTGAAATTA
80631788 A
258 A
* *
80631789 TTGTCTTTGC--CATTCTAAGTTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATTATTA
1 TTGTCTTT-CATCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCGGATTGAATAATT-
* * * **
80631852 TTATT--TTTGATAATGTTGAGTTTTGTCATATGAGTTTGATAATTGAATTTGAATAATT
64 TT-TTCCTCT-ATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATT
80631910 GTCTTTGTAA
Statistics
Matches: 542, Mismatches: 68, Indels: 60
0.81 0.10 0.09
Matches are distributed among these distances:
253 1 0.00
254 65 0.12
255 52 0.10
256 143 0.26
257 10 0.02
258 12 0.02
259 35 0.06
260 1 0.00
264 46 0.08
265 77 0.14
266 94 0.17
267 6 0.01
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (258 bp):
TTGTCTTTCATCATTCTAAGTTTGGAATACATTTTTTTTATGTCGGTTTCGGATTGAATAATTTT
TTCCTCTATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATTTGAATAATTTGAAATTAA
ATGTATTTGTCCTTCTAAGTTTGGGATACATTTTTTAATGTCAATTTCGGATTGAATCATTTTTT
TTCTCGATAATATCAAGTTTTGTCATACGAGTTTGATATTGAATTTGAATAATTTGAAATTAA
Found at i:80631759 original size:127 final size:129
Alignment explanation
Indices: 80631015--80631909 Score: 851
Period size: 128 Copynumber: 6.9 Consensus size: 129
80631005 TAATGTTTTG
* * * *
80631015 TTGTCTTCATCATTCTAAGTTTGGGATACA-TTTTTTT-TGCCAGTTTCGGATTGAATCATTTTT
1 TTGTCTTCGTCATTCTAAATTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATCATTTTT
* * ** *
80631078 TC-CTGATAATATCGAATTTTGTCATATGAGTTTGATACTCAAATTTGAATTATTTGAAATTAA
66 TCTCTGATAATATTGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAATTTGAAATTAA
* * * * * **
80631141 CTGT-TTTGTCCTTCTAAGTTTGGGATACA-TTTTTTAATGTC-AATTCTGGATTGAATCATTTT
1 TTGTCTTCGTCATTCTAAATTTGGGATACATTTTTTTTATGTCGGTTTC-GGATTGAATCATTTT
* * ** *
80631203 TTTTCTCGTTAATATAAAGTTTTGTCATACGAGTTTGATA-TTCGAATTTGAATAATTTGAAATT
65 TTCTCT-GATAATATTGAGTTTTGTCATATGAGTTTGATACTT-GAATTTGAATAATTTGAAATT
80631267 AA
128 AA
* * * * * * *
80631269 TTCTCTTTCATCATTCTAAGTTTGGAATACA-TTTTTTTATGTTGGTTTC-AAGTT-AATAATTT
1 TTGTC-TTCGTCATTCTAAATTTGGGATACATTTTTTTTATGTCGGTTTCGGA-TTGAATCATTT
** * *
80631331 TTTCCTCT-ATAATATTGAGTTTTGTCATATGAGTTTGATACTCAAATCTAAATCATTTGAAATT
64 TTT-CTCTGATAATATTGAGTTTTGTCATATGAGTTTGATACTTGAAT-T---TGA-AT--AATT
*
80631395 TGAAATTAT
121 TGAAATTAA
* * * **
80631404 TTGTCTTCATTATTCTAAATTTGGGATACA-TTTTTTTATATCGGTTTCAAATTGAATCATTTTT
1 TTGTCTTCGTCATTCTAAATTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATCA-TTTT
* *
80631468 TTCTCTCGATAATATCGAGTTTTGTCAAATGAGTTTGATACTTGAATTTGAATAAATTTGAAATT
65 TTCTCT-GATAATATTGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAAT-AATTTGAAATT
80631533 AGA
128 A-A
* * *
80631536 -TGTCTTCGTCATTCTAAATTTGGAATACATTTTTTTTATGTCGGTTTCGGGTTGAATAATTTTT
1 TTGTCTTCGTCATTCTAAATTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATCATTTTT
* ** *
80631600 CCTCT-ATAATATTGAGTTTTGTTGTATGAGTTTGATACTCGAATTTGAATAATTTGAAATTAA
66 TCTCTGATAATATTGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAATTTGAAATTAA
* * * ** *
80631663 TTGTCTTTGTCATTCTAAGTTT-GGATTACA-TTTTTTGATGTCACTTTCGGATTAAATCATTTT
1 TTGTCTTCGTCATTCTAAATTTGGGA-TACATTTTTTTTATGTCGGTTTCGGATTGAATCATTTT
* * ** * *
80631726 TTCT-TGACAATATCT-AGTTTTGTTATACAAGTTTGATATTTGAATAT-AAGT-ATTTGAAATT
65 TTCTCTGATAATAT-TGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAA-TAATTTGAAATT
80631787 AA
128 AA
* * * *
80631789 TTGTCTTTGCCATTCTAAGTTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATTATTATT
1 TTGTCTTCGTCATTCTAAATTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATCATT-TT
* * *
80631854 ATT-TTTGATAATGTTGAGTTTTGTCATATGAGTTTGATAATTGAATTTGAATAATT
65 -TTCTCTGATAATATTGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAATT
80631910 GTCTTTGTAA
Statistics
Matches: 634, Mismatches: 97, Indels: 72
0.79 0.12 0.09
Matches are distributed among these distances:
125 31 0.05
126 63 0.10
127 98 0.15
128 122 0.19
129 90 0.14
130 41 0.06
131 51 0.08
132 27 0.04
133 3 0.00
134 40 0.06
135 26 0.04
136 7 0.01
137 35 0.06
ACGTcount: A:0.27, C:0.10, G:0.15, T:0.48
Consensus pattern (129 bp):
TTGTCTTCGTCATTCTAAATTTGGGATACATTTTTTTTATGTCGGTTTCGGATTGAATCATTTTT
TCTCTGATAATATTGAGTTTTGTCATATGAGTTTGATACTTGAATTTGAATAATTTGAAATTAA
Found at i:80633445 original size:132 final size:132
Alignment explanation
Indices: 80633288--80633554 Score: 507
Period size: 132 Copynumber: 2.0 Consensus size: 132
80633278 TATGCCTAAT
* *
80633288 TTAATTGATGTAATGCGAATATTTTTTTACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
1 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
80633353 ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
66 ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
80633418 AA
131 AA
80633420 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
1 TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
*
80633485 ATTTTAGCATTTGAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
66 ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
80633550 AA
131 AA
80633552 TTA
1 TTA
80633555 TCACTTTTAC
Statistics
Matches: 132, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
132 132 1.00
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (132 bp):
TTAATTGATGTAATGCCAATATTTTTATACCTATTTTAATTAAAACGTTTCAAAATTTTGAGATT
ATTTTAGCATTTAAGATATAATTAAAAATAGCTTAATACCTATTTTAGTCCCTATATTATAGTGA
AA
Found at i:80633736 original size:32 final size:32
Alignment explanation
Indices: 80633700--80633762 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
80633690 GACAATAATA
**
80633700 AAGGGACCAATGTGAGAATTTCACTATAGTAC
1 AAGGGACCAAACTGAGAATTTCACTATAGTAC
** *
80633732 AAGGGGTCAAACTGAGAATTTCGCTATAGTA
1 AAGGGACCAAACTGAGAATTTCACTATAGTA
80633763 GAGTGCCTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.37, C:0.14, G:0.24, T:0.25
Consensus pattern (32 bp):
AAGGGACCAAACTGAGAATTTCACTATAGTAC
Found at i:80634718 original size:199 final size:198
Alignment explanation
Indices: 80634372--80635756 Score: 1504
Period size: 199 Copynumber: 6.9 Consensus size: 198
80634362 AAAAAAGAAG
* ***
80634372 AAGCTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTGCGGGAAAAGCAAATGCTTGTACC-A
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGT-CCAA
* *** * * * *
80634436 CACATATTTGTATCTGACATTTATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTTAGCC
65 TACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAA-TCGAGCTTTAGCC
* * * *
80634501 ATCGGCTAATGGTAGCCCCAGAATCTTATCCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCC
129 ATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCC
*
80634566 TTACA
194 TTAAA
* * *
80634571 AAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* * * *
80634636 ACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTTAGCCA
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAA-TCGAGCTTTAGCCA
* * *
80634701 TCGGCTAATGGTAGCCCCAGAATCTTATGC-AGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCC
130 TCGGCTAATGGTAGCCCCAGAATCTTAT-CTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCC
*
80634765 TTACA
194 TTAAA
* * *
80634770 AAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGTCCAAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* * * * *
80634835 ACATATTCATATCTAATACTCATGCTTGAGTCCGAGTAACATAAGCTTAAAGCGAGCTTTAGCCG
66 ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGC-TAAATCGAGCTTTAGCCA
* * * * * *
80634900 TTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGATTTAAGGTGTGAAGAGGATCCAATTGCCT
130 TCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCT
80634965 TAAA
195 TAAA
* * * * **
80634969 AAGTTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCTGGA
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTC-CAA
* * * * * *
80635034 -ACATATCCGTATTTGACACTCACATGCTTGAGTTCAAATAACATAAGCTCAAATTGAGCTTTAG
65 TACATATCCATATCTGACACT--CATGCTTGAGTCCGAGTAACATAAGCT-AAATCGAGCTTTAG
* *
80635098 CCATTGGCTAATGGTAACCCCAGAATC---T-TA-----TTTAA-GTGTGAAGAGGCTCCAATTG
127 CCATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
80635153 CCTTTAA
192 CCTTAAA
* ** * *
80635160 AAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGGGGGATTTGTAAATGCTTGCCGGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTT----G-T
* * * *
80635225 AGGACCAATACATATCCATGTCTGACAGTCATGTTTGAGTCAGAGTAACATAAGCTTAAATCGAG
61 ----CCAATACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGC-TAAATCGAG
* * * * * *
80635290 CTTTAGCCATTGCCTGATGGTAACCCAAGAATCTTATCTGGGTGGTTTAAGGTGTGAAGAGGCTC
121 CTTTAGCCATCGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTC
80635355 CAATTGCCTTAAA
186 CAATTGCCTTAAA
** * * * **
80635368 AAGCTCCTTTTAGTAGTTAAGCTGGACAAGGCTTTGATTCCGGGATTTGCCAATTCTTGTCCTGT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* * * * *
80635433 ACATATCCATATTTTGACACTCATGCTTGATTCTGAGTAACATAAGCTCAAATCAAGCTTTAGTC
66 ACATATCCATA-TCTGACACTCATGCTTGAGTCCGAGTAACATAAGCT-AAATCGAGCTTTAGCC
* ** * * *
80635498 AT-TGCTTACCGGTAGCCTCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
129 ATCGGC-TAATGGTAGCCCCAGAATCTTA-TCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTG
*
80635562 CTTTAAA
192 CCTTAAA
* * ** ** *
80635569 AACCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTGATTATGGGATTCACAAATGCTTGTCCGAT
1 AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
* *
80635634 ACATATCCGTATCTGACACTCATGTTTGAG-CCTGAGTAACATAAGCTCAAATCGAGCTTTAGCC
66 ACATATCCATATCTGACACTCATGCTTGAGTCC-GAGTAACATAAGCT-AAATCGAGCTTTAGCC
* **
80635698 ATCAGCTAACAGTAGCCCCAGAATCTTATCATAGGTGGTTTAAGGTGTGAAGAGGCTCC
129 ATCGGCTAATGGTAGCCCCAGAATCTTATC-TAGGTGGTTTAAGGTGTGAAGAGGCTCC
80635757 TATTTTTACC
Statistics
Matches: 1017, Mismatches: 133, Indels: 71
0.83 0.11 0.06
Matches are distributed among these distances:
191 74 0.07
192 5 0.00
195 1 0.00
196 1 0.00
197 2 0.00
198 62 0.06
199 448 0.44
200 178 0.18
201 164 0.16
202 1 0.00
203 1 0.00
204 1 0.00
207 5 0.00
208 74 0.07
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (198 bp):
AAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTTGATTGCGGGATTTGCAAATGCTTGTCCAAT
ACATATCCATATCTGACACTCATGCTTGAGTCCGAGTAACATAAGCTAAATCGAGCTTTAGCCAT
CGGCTAATGGTAGCCCCAGAATCTTATCTAGGTGGTTTAAGGTGTGAAGAGGCTCCAATTGCCTT
AAA
Found at i:80635676 original size:598 final size:587
Alignment explanation
Indices: 80634375--80635726 Score: 1543
Period size: 598 Copynumber: 2.3 Consensus size: 587
80634365 AAAGAAGAAG
* *
80634375 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTGCGGGA-AAAGCAAATGCTTGTACC-ACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAA-CAAATGCTTGT-CCGA-A
** * * * *
80634438 CATATTTGTATCTGACATTTATGCTTGAGTCC-GAGTAATATAAGCT-AAAGTCAAGCTTTAGCC
63 CATATCCGTATCTGACACTCATGCTTGAG-CCTGAGTAACATAAGCTCAAA-TCGAGCTTTAGCC
*
80634501 ATCGGCTAATGGTAGCCCCAGAATCTTATCCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAATGCC
126 ATCGGCTAATGGTAGCCCCAGAATC-T-T--A-----TTTGAAGTGTGAAGAGGCTCCAAATGCC
* * **
80634566 TTACAAAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGCTTGT
182 TTACAAAGCTCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTTGT
* * * *
80634631 CCAATACATATTCATATCTGATACTCATGCTTGAGTCCGAGTAATATAAGCTAAAGTCAAGCTTT
247 CCAATACATATCCATATCTGACACTCATGCTTGAGTCAGAGTAACATAAGCTAAAGTCAAGCTTT
* * * * *
80634696 AGCCATCGGCTAATGGTAGCCCCAGAATCTTATGCAGTTGGTTTGAGGTGTGAAGAGGCTCCAAA
312 AGCCATCGCCTAATGGTAACCCAAGAATCTTATGCAGGTGGTTTAAGGTGTGAAGAGGCTCCAAA
* * *
80634761 TGCCTTACAAAGCTTCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTGCAGGATTTGCAAATGC
377 TGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAATGC
* * * *
80634826 TTGTCCAATACATATTCATATCTAATACTCATGCTTGAGTCCGAGTAACATAAGCTTAAAGCGAG
442 TTGTCCAATACATATCCATATCTAACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAGCAAG
* * * * *
80634891 CTTTAGCCGTTGCCTAATGGTAACCCCAGAGTCTTATCTAGGTGATTTAAGGTGTGAAGAGGATC
507 CTTTAGCCATTGCCTAACGGTAACCCCAAAATCTTATATAGGTGATTTAAGGTGTGAAGAGGATC
*
80634956 CAATTGCCTTAAAAAG
572 CAATTGCCTTAAAAAC
* * * ** *
80634972 TTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTCCAGGATTTGCAAATGCTTGTCTGGAACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAACAAATGCTTGTC-CGAACA
* * * * *
80635037 TATCCGTATTTGACACTCACATGCTTGAG-TTCAAATAACATAAGCTCAAATTGAGCTTTAGCCA
65 TATCCGTATCTGACACT--CATGCTTGAGCCT-GAGTAACATAAGCTCAAATCGAGCTTTAGCCA
* * *
80635101 TTGGCTAATGGTAACCCCAGAATCTTATTT-AAGTGTGAAGAGGCTCCAATTGCCTTTA-AAAGC
127 TCGGCTAATGGTAGCCCCAGAATCTTATTTGAAGTGTGAAGAGGCTCCAAATGCC-TTACAAAGC
** *
80635164 TCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGGGGGATTTGTAAATGCTTGCCGGATAGGA
191 TCCTTTTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTT----G-T----
* * * *
80635229 CCAATACATATCCATGTCTGACAGTCATGTTTGAGTCAGAGTAACATAAGCTTAAA-TCGAGCTT
247 CCAATACATATCCATATCTGACACTCATGCTTGAGTCAGAGTAACATAAGC-TAAAGTCAAGCTT
* * *
80635293 TAGCCATTGCCTGATGGTAACCCAAGAATCTTAT-CTGGGTGGTTTAAGGTGTGAAGAGGCTCCA
311 TAGCCATCGCCTAATGGTAACCCAAGAATCTTATGC-AGGTGGTTTAAGGTGTGAAGAGGCTCCA
* ** * * *
80635357 ATTGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCTGGACAAGGCTTTGATTCCGGGATTTGCCAAT
375 AATGCCTTAAAAAGCTCCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAAT
* ** * * * * *
80635422 TCTTGTCCTGTACATATCCATATTTTGACACTCATGCTTGATTCTGAGTAACATAAGCTCAAATC
440 GCTTGTCCAATACATATCCATA-TCTAACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAGC
* * * * * *
80635487 AAGCTTTAGTCATTGCTTACCGGTAGCCTCAAAATCTTATTATAGGTGGTTTAAGGTGTGAAGAG
504 AAGCTTTAGCCATTGCCTAACGGTAACCCCAAAATCTTA-TATAGGTGATTTAAGGTGTGAAGAG
* *
80635552 GCTCCAATTGCTTTAAAAAC
568 GATCCAATTGCCTTAAAAAC
* * * *
80635572 CTCCTTTTAGTAGTTAAGCCAAACAAGGCTTTGATTATGGGATTCACAAATGCTTGTCCGATACA
1 CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAACAAATGCTTGTCCGA-ACA
* *
80635637 TATCCGTATCTGACACTCATGTTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCA
65 TATCCGTATCTGACACTCATGCTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCG
**
80635702 GCTAACAGTAGCCCCAGAATCTTAT
130 GCTAATGGTAGCCCCAGAATCTTAT
80635727 CATAGGTGGT
Statistics
Matches: 631, Mismatches: 100, Indels: 47
0.81 0.13 0.06
Matches are distributed among these distances:
589 74 0.12
590 6 0.01
593 1 0.00
594 1 0.00
595 1 0.00
596 1 0.00
597 68 0.11
598 242 0.38
599 125 0.20
600 112 0.18
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (587 bp):
CTCCTTTTAGTAGTTAAGCTAGACAAGGCTTTGATTACGGGATTAACAAATGCTTGTCCGAACAT
ATCCGTATCTGACACTCATGCTTGAGCCTGAGTAACATAAGCTCAAATCGAGCTTTAGCCATCGG
CTAATGGTAGCCCCAGAATCTTATTTGAAGTGTGAAGAGGCTCCAAATGCCTTACAAAGCTCCTT
TTAGTAGTTAAGCCAAACAAGGCTTCAATTGCAGGATTTGCAAATGCTTGTCCAATACATATCCA
TATCTGACACTCATGCTTGAGTCAGAGTAACATAAGCTAAAGTCAAGCTTTAGCCATCGCCTAAT
GGTAACCCAAGAATCTTATGCAGGTGGTTTAAGGTGTGAAGAGGCTCCAAATGCCTTAAAAAGCT
CCTTTTAGTAGTTAAGCCAGACAAGGCTTGGATTCCAGGATTTGCAAATGCTTGTCCAATACATA
TCCATATCTAACACTCATGCTTGAGTCCGAGTAACATAAGCTCAAAGCAAGCTTTAGCCATTGCC
TAACGGTAACCCCAAAATCTTATATAGGTGATTTAAGGTGTGAAGAGGATCCAATTGCCTTAAAA
AC
Found at i:80643094 original size:22 final size:22
Alignment explanation
Indices: 80643049--80643091 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
80643039 AAAATGTTAT
80643049 AAAATAATTTTTAAATTATTTA
1 AAAATAATTTTTAAATTATTTA
*
80643071 AAAATTATTATTTAAATTATT
1 AAAATAATT-TTTAAATTATT
80643092 AAATTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AAAATAATTTTTAAATTATTTA
Found at i:80643346 original size:40 final size:40
Alignment explanation
Indices: 80643294--80643373 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
80643284 GAAGATAAGA
* *
80643294 AAATGAGAACTTTAGATTGGTGTAAGTGGTATGAACAAAG
1 AAATGAGAACTTTAGATTAGTATAAGTGGTATGAACAAAG
* *
80643334 AAATGAGAACTTTAGATTAGTATAAGTGGTGTGAATAAAG
1 AAATGAGAACTTTAGATTAGTATAAGTGGTATGAACAAAG
80643374 GATGACATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.41, C:0.04, G:0.26, T:0.29
Consensus pattern (40 bp):
AAATGAGAACTTTAGATTAGTATAAGTGGTATGAACAAAG
Found at i:80650763 original size:22 final size:20
Alignment explanation
Indices: 80650716--80650764 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
80650706 TACTATTTTG
*
80650716 TTATT-TAATTATGTGTATT
1 TTATTATAATTAGGTGTATT
80650735 TTA-TATAATGTAGGTGTATAT
1 TTATTATAAT-TAGGTGTAT-T
80650756 TTATTATAA
1 TTATTATAA
80650765 AATGTTAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 1 0.04
19 7 0.28
20 8 0.32
21 4 0.16
22 5 0.20
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (20 bp):
TTATTATAATTAGGTGTATT
Found at i:80655713 original size:22 final size:21
Alignment explanation
Indices: 80655662--80655715 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
80655652 TATCCTCGAT
*
80655662 AAAGTGA-AAAAAGTGAAATA
1 AAAGTGATAAAAAATGAAATA
*
80655682 AAA-TAAATAAATAAATGAAATA
1 AAAGT-GATAAA-AAATGAAATA
80655704 AAAGTGATAAAA
1 AAAGTGATAAAA
80655716 GGGGGAGAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 7
0.73 0.08 0.19
Matches are distributed among these distances:
19 1 0.04
20 4 0.15
21 4 0.15
22 17 0.63
23 1 0.04
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.19
Consensus pattern (21 bp):
AAAGTGATAAAAAATGAAATA
Found at i:80666792 original size:3 final size:3
Alignment explanation
Indices: 80666784--80666838 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
80666774 CATTAGTCTT
80666784 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
80666832 TTA TTA T
1 TTA TTA T
80666839 ATATCCTTCT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:80667689 original size:12 final size:12
Alignment explanation
Indices: 80667672--80667696 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80667662 CTTAGTTTTG
80667672 CGGAACGCCTTA
1 CGGAACGCCTTA
80667684 CGGAACGCCTTA
1 CGGAACGCCTTA
80667696 C
1 C
80667697 TCCTTACCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGAACGCCTTA
Found at i:80670968 original size:13 final size:14
Alignment explanation
Indices: 80670952--80670987 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
80670942 CAATCTCATA
80670952 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
80670965 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
80670978 TCTC-ATTTCA
1 TCTCAATTTCA
80670988 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:80670977 original size:18 final size:19
Alignment explanation
Indices: 80670939--80670979 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
80670929 TGGTTCATGT
80670939 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
80670958 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
80670976 TTTC
1 TTTC
80670980 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:80671640 original size:15 final size:15
Alignment explanation
Indices: 80671620--80671666 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
80671610 TATTATATAT
80671620 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
80671635 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
80671650 TTCAATCAATATAAA
1 TTCAATCAATATAAA
80671665 TT
1 TT
80671667 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:80672602 original size:23 final size:23
Alignment explanation
Indices: 80672588--80672630 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
80672578 TTCTGTTTCT
80672588 TTTC-TTCTTTTTATTCTTTTTG
1 TTTCTTTCTTTTTATTCTTTTTG
80672610 TTTCTTTCTTTTGT-TTCTTTT
1 TTTCTTTCTTTT-TATTCTTTT
80672631 ATATATATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 4 0.21
23 14 0.74
24 1 0.05
ACGTcount: A:0.02, C:0.14, G:0.05, T:0.79
Consensus pattern (23 bp):
TTTCTTTCTTTTTATTCTTTTTG
Found at i:80672623 original size:13 final size:13
Alignment explanation
Indices: 80672605--80672629 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80672595 TTTTTATTCT
80672605 TTTTGTTTCTTTC
1 TTTTGTTTCTTTC
80672618 TTTTGTTTCTTT
1 TTTTGTTTCTTT
80672630 TATATATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.12, G:0.08, T:0.80
Consensus pattern (13 bp):
TTTTGTTTCTTTC
Found at i:80673083 original size:31 final size:33
Alignment explanation
Indices: 80673027--80673090 Score: 89
Period size: 31 Copynumber: 2.0 Consensus size: 33
80673017 AATTTATTTT
80673027 ATAACATAATAATTTAATATCAATTAAATAATA
1 ATAACATAATAATTTAATATCAATTAAATAATA
*
80673060 ATAACCATAATAA-TTAAT-T-AATTAATTAATA
1 ATAA-CATAATAATTTAATATCAATTAAATAATA
80673091 TAAGAAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 11 0.38
32 1 0.03
33 9 0.31
34 8 0.28
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (33 bp):
ATAACATAATAATTTAATATCAATTAAATAATA
Found at i:80673304 original size:13 final size:13
Alignment explanation
Indices: 80673286--80673317 Score: 55
Period size: 13 Copynumber: 2.4 Consensus size: 13
80673276 CTCGATTAAC
80673286 TTAATAAATATTT
1 TTAATAAATATTT
80673299 TTAATAAATATTT
1 TTAATAAATATTT
80673312 TCTAAT
1 T-TAAT
80673318 CCATTTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 14 0.78
14 4 0.22
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (13 bp):
TTAATAAATATTT
Found at i:80674369 original size:14 final size:14
Alignment explanation
Indices: 80674350--80674377 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
80674340 TTAAAAATGA
80674350 TGAAATCAATAGAT
1 TGAAATCAATAGAT
80674364 TGAAATCAATAGAT
1 TGAAATCAATAGAT
80674378 AAAAAAAGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
TGAAATCAATAGAT
Found at i:80676729 original size:12 final size:12
Alignment explanation
Indices: 80676708--80676737 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80676698 TCGGTGTTAT
*
80676708 TGGTGACAGCAG
1 TGGTGGCAGCAG
80676720 TGGTGGCAGCAG
1 TGGTGGCAGCAG
80676732 TGGTGG
1 TGGTGG
80676738 GTGTTACGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.13, G:0.50, T:0.20
Consensus pattern (12 bp):
TGGTGGCAGCAG
Found at i:80677641 original size:2 final size:2
Alignment explanation
Indices: 80677636--80677716 Score: 53
Period size: 2 Copynumber: 46.5 Consensus size: 2
80677626 GATTAAAAAA
*
80677636 AT AT AT AT AT AT AT AT AT AT TT A- AT A- AT -T A- AGT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT
80677674 AT AT -T AT AT -T AT AT -T AT AT -T AT AT -T AT AT -T AT -T AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
80677709 -T AT AT AT A
1 AT AT AT AT A
80677717 AAAGAAACAA
Statistics
Matches: 63, Mismatches: 2, Indels: 28
0.68 0.02 0.30
Matches are distributed among these distances:
1 13 0.21
2 49 0.78
3 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (2 bp):
AT
Found at i:80677678 original size:5 final size:5
Alignment explanation
Indices: 80677639--80677713 Score: 84
Period size: 5 Copynumber: 15.0 Consensus size: 5
80677629 TAAAAAAATA
* *
80677639 TATAT ATATAT ATATAT T-TAA TA-AT TA-AG TATAT TATAT TATAT TATAT
1 TATAT -TATAT -TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
80677688 TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TA-TAT TATAT
80677714 ATAAAAGAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
4 9 0.15
5 37 0.60
6 16 0.26
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:80677783 original size:31 final size:30
Alignment explanation
Indices: 80677748--80677808 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
80677738 GAAACAGAAT
*
80677748 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
80677779 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
80677809 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:80682738 original size:47 final size:47
Alignment explanation
Indices: 80682675--80682978 Score: 416
Period size: 47 Copynumber: 6.4 Consensus size: 47
80682665 CCCTTCGGGA
* * *
80682675 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
80682722 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
80682769 CTTATCTCATATATGCA-TGTTCACATTCATCGCATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
80682816 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
80682863 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
80682910 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
80682959 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
80682979 GTACATCAAT
Statistics
Matches: 237, Mismatches: 16, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 195 0.82
49 40 0.17
50 1 0.00
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:80688614 original size:41 final size:41
Alignment explanation
Indices: 80688554--80688671 Score: 182
Period size: 41 Copynumber: 2.9 Consensus size: 41
80688544 ATAAAAAACT
* * *
80688554 GAGCAATAGCGACGTTTTTGCTAAAACGCCGCTAAAGACTA
1 GAGCATTAGCGACGTTTTTGGTAAAACGCCGCTAAAGACCA
* *
80688595 GAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAGACCA
1 GAGCATTAGCGACGTTTTTGGTAAAACGCCGCTAAAGACCA
*
80688636 GAGCATTAGCGACGTTTTTGGTAAAACGCCACTAAA
1 GAGCATTAGCGACGTTTTTGGTAAAACGCCGCTAAA
80688672 AGTCATATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 69 1.00
ACGTcount: A:0.32, C:0.22, G:0.24, T:0.22
Consensus pattern (41 bp):
GAGCATTAGCGACGTTTTTGGTAAAACGCCGCTAAAGACCA
Found at i:80688897 original size:14 final size:14
Alignment explanation
Indices: 80688875--80688913 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
80688865 TAGGATTTAT
* *
80688875 GATTTAGGGTTTTG
1 GATTTAGGGGTTGG
80688889 GATTTAGGGGTTGG
1 GATTTAGGGGTTGG
*
80688903 GGTTTAGGGGT
1 GATTTAGGGGT
80688914 AAATATAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.13, C:0.00, G:0.46, T:0.41
Consensus pattern (14 bp):
GATTTAGGGGTTGG
Found at i:80690101 original size:22 final size:22
Alignment explanation
Indices: 80690073--80690115 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
80690063 ACATTCCTGC
80690073 GAATCCTGCTGTTAACGTTAAG
1 GAATCCTGCTGTTAACGTTAAG
80690095 GAATCCTGCTGTTAACGTTAA
1 GAATCCTGCTGTTAACGTTAA
80690116 AGATGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.33
Consensus pattern (22 bp):
GAATCCTGCTGTTAACGTTAAG
Found at i:80692460 original size:18 final size:17
Alignment explanation
Indices: 80692434--80692473 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
80692424 TGCAGTTAAA
*
80692434 TGCTGTGTGTGGTTTGTT
1 TGCTGTGTGTGGCTT-TT
*
80692452 TGCTTTGTGTGGCTTTT
1 TGCTGTGTGTGGCTTTT
80692469 TGCTG
1 TGCTG
80692474 ATTGATATGA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.00, C:0.10, G:0.35, T:0.55
Consensus pattern (17 bp):
TGCTGTGTGTGGCTTTT
Found at i:80692893 original size:51 final size:51
Alignment explanation
Indices: 80692830--80692966 Score: 148
Period size: 51 Copynumber: 2.7 Consensus size: 51
80692820 TAGGGTAACT
* *
80692830 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATAG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATAG
* * * ** * * ** *
80692881 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATAG
* *
80692932 AATCTTCGAAGATATGATATTATATTCTTAAAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAAAGAT
80692967 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATAG
Found at i:80695887 original size:51 final size:51
Alignment explanation
Indices: 80695824--80695960 Score: 148
Period size: 51 Copynumber: 2.7 Consensus size: 51
80695814 TAGGGTAACT
* *
80695824 AATCTTAGAAGATATGATATTATAATCTTAGAGATCTTAGATATGATATAG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATAG
* * * ** * * ** *
80695875 AATCTTATAAGATATTATTTTATAAGATTACATATCTTATCTAAGATATGG
1 AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATAG
* *
80695926 AATCTTCGAAGATATGATATTATATTCTTAAAGAT
1 AATCTTAGAAGATATGATATTATAATCTTAAAGAT
80695961 TTGATGGTAG
Statistics
Matches: 66, Mismatches: 20, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.40
Consensus pattern (51 bp):
AATCTTAGAAGATATGATATTATAATCTTAAAGATCTTAGATAAGATATAG
Found at i:80698079 original size:43 final size:43
Alignment explanation
Indices: 80698031--80698180 Score: 248
Period size: 43 Copynumber: 3.5 Consensus size: 43
80698021 TTTTTGAATT
*
80698031 TCATGA-CTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 TCATGATC-TTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGG
*
80698074 TCATGATCTTTAGCTGCGTTTGTGGGAAAAGTGCCGCTAAAGG
1 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGG
* *
80698117 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGTGTCGCTAATGG
1 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGG
80698160 TCATGATCTTTAGCGGCGTTT
1 TCATGATCTTTAGCGGCGTTT
80698181 TTTTAAATAA
Statistics
Matches: 101, Mismatches: 5, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
43 100 0.99
44 1 0.01
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (43 bp):
TCATGATCTTTAGCGGCGTTTGTGGGAAAAGTGCCGCTAAAGG
Found at i:80702522 original size:14 final size:14
Alignment explanation
Indices: 80702505--80702535 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
80702495 AGTAAAATAT
80702505 TTTCCGGAAAATGA
1 TTTCCGGAAAATGA
*
80702519 TTTCTGGAAAATGA
1 TTTCCGGAAAATGA
80702533 TTT
1 TTT
80702536 ACTTTTCTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (14 bp):
TTTCCGGAAAATGA
Found at i:80702551 original size:19 final size:19
Alignment explanation
Indices: 80702519--80702583 Score: 112
Period size: 19 Copynumber: 3.4 Consensus size: 19
80702509 CGGAAAATGA
80702519 TTTCTGGAAAATGATTTACT
1 TTTCTGG-AAATGATTTACT
*
80702539 TTTCTGGAAATGATTTAAT
1 TTTCTGGAAATGATTTACT
80702558 TTTCTGGAAATGATTTACT
1 TTTCTGGAAATGATTTACT
80702577 TTTCTGG
1 TTTCTGG
80702584 TGTTTGAATG
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
19 36 0.84
20 7 0.16
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (19 bp):
TTTCTGGAAATGATTTACT
Found at i:80707229 original size:31 final size:32
Alignment explanation
Indices: 80707172--80707240 Score: 104
Period size: 31 Copynumber: 2.1 Consensus size: 32
80707162 GACCTTGCGA
*
80707172 AGAGGAATGAGATTTGCCTCAGAAAGAGAGAAAG
1 AGAGGAATGAAATTTG-C-CAGAAAGAGAGAAAG
80707206 AGAGGAATGAAATTTG-CAGAAAGAGAGAAAG
1 AGAGGAATGAAATTTGCCAGAAAGAGAGAAAG
80707237 AGAG
1 AGAG
80707241 AGAAGATGAA
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
31 19 0.56
34 15 0.44
ACGTcount: A:0.48, C:0.06, G:0.33, T:0.13
Consensus pattern (32 bp):
AGAGGAATGAAATTTGCCAGAAAGAGAGAAAG
Found at i:80708377 original size:12 final size:12
Alignment explanation
Indices: 80708360--80708389 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
80708350 TCAGTGTTCT
*
80708360 TGGTGGCAGCAG
1 TGGTGGCAACAG
80708372 TGGTGGCAACAG
1 TGGTGGCAACAG
80708384 TGGTGG
1 TGGTGG
80708390 GTGTCACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.13, G:0.50, T:0.20
Consensus pattern (12 bp):
TGGTGGCAACAG
Found at i:80711238 original size:15 final size:15
Alignment explanation
Indices: 80711214--80711244 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
80711204 GCACTCATTG
*
80711214 AAGTCTACTAAATGT
1 AAGTCCACTAAATGT
80711229 AAGTCCACTAAATGT
1 AAGTCCACTAAATGT
80711244 A
1 A
80711245 GTAGCAACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (15 bp):
AAGTCCACTAAATGT
Found at i:80711831 original size:31 final size:30
Alignment explanation
Indices: 80711773--80711834 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 30
80711763 ACACAATAAA
80711773 AACATTTTGAAATTAAAAAATAATTAAATTT
1 AACATTTTGAAATTAAAAAAT-ATTAAATTT
*
80711804 AACATTATTGAAATTAACGAAAT-TTAAATTT
1 AACATT-TTGAAATTAA-AAAATATTAAATTT
80711835 TCGACTTACC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
31 14 0.50
32 10 0.36
33 4 0.14
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.39
Consensus pattern (30 bp):
AACATTTTGAAATTAAAAAATATTAAATTT
Found at i:80716011 original size:19 final size:17
Alignment explanation
Indices: 80715995--80716028 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
80715985 TTTGATTTGA
80715995 TCGTAGTTTTTTTATTT
1 TCGTAGTTTTTTTATTT
*
80716012 TCTTAGTTTTTCTTATT
1 TCGTAGTTTTT-TTATT
80716029 GGTTTTGCTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (17 bp):
TCGTAGTTTTTTTATTT
Found at i:80738223 original size:4 final size:4
Alignment explanation
Indices: 80738214--80738242 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
80738204 AAGCATAAGT
80738214 TCTA TCTA TCTA TCTA TCTA TCTA TCTA T
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA T
80738243 ATATATATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TCTA
Found at i:80741510 original size:46 final size:46
Alignment explanation
Indices: 80741443--80741617 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
80741433 TGTAACCCAC
80741443 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
*
80741489 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTCGCAT
* * * **
80741539 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
80741582 CCATAAGTGAACTCGGACTCAAATCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
80741618 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 3 0.03
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.57
47 26 0.24
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:80741563 original size:93 final size:93
Alignment explanation
Indices: 80741451--80741621 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
80741441 ACCCATAAGT
** *
80741451 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAAATCAA
80741516 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
80741544 GAACTCGGACTCAACTCAACGAGTTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAAATCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAAATCAA
*
80741609 CGAGTTCGGATGC
66 CGAGCTCGGATGC
80741622 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACGTTCGCATCCATAAGTGAACTCGGACTCAAATCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:80743147 original size:320 final size:320
Alignment explanation
Indices: 80742565--80743201 Score: 1184
Period size: 320 Copynumber: 2.0 Consensus size: 320
80742555 CCAAATTTCA
*
80742565 CCTAATTTTGACTTTTCAACAATTTTGTCTCCCATGGCCGTCCATCACACTTTCAATGGCCTAAT
1 CCTAATTTTGACTTTTCAACAATTTTGTCTCCCATGGCCGGCCATCACACTTTCAATGGCCTAAT
80742630 TTCACTTTAAATACCCCCAATCTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
66 TTCACTTTAAATACCCCCAATCTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
80742695 CTTTTACCTTTTACGCGATTTAGTCCTTTTTCGAAATTGGACTAGAAATTGCTAAAATTAACTTA
131 CTTTTACCTTTTACGCGATTTAGTCCTTTTTCGAAATTGGACTAGAAATTGCTAAAATTAACTTA
* *
80742760 CCAAAATTTACATGAACTTATAAAATTATATTATAGCACATAAAATAATACTAAAAAATTTTTCT
196 CCAAAATTTACATGAACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
* *
80742825 CTAGCCTCGAAATAGTGGTCCCGAAACCACTGTTTCGACTAGGCCCAAAATCGGGCTATT
261 CTAGCCTCAAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCTATT
80742885 CCTAATTTTGACTTTTCAACAATTTTGTCTCCCATGGCCGGCCATCACACTTTCAATGGCCTAAT
1 CCTAATTTTGACTTTTCAACAATTTTGTCTCCCATGGCCGGCCATCACACTTTCAATGGCCTAAT
* *
80742950 TTCACTTTAAATACCCCCAATTTAAGATGCAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
66 TTCACTTTAAATACCCCCAATCTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
*
80743015 CTTTTACCTTTTACGCGATTTAGTCCTTTTTTGAAATTGGACTAGAAATTGCTAAAATTAACTTA
131 CTTTTACCTTTTACGCGATTTAGTCCTTTTTCGAAATTGGACTAGAAATTGCTAAAATTAACTTA
*
80743080 CCAAAATTTACATGCACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
196 CCAAAATTTACATGAACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
*
80743145 CTAGCCTCAAAATAGTGGTCCCGAAACCACTATTTCTACTAGGCCCAAAATCGGGCT
261 CTAGCCTCAAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCT
80743202 GTTACAGATT
Statistics
Matches: 307, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
320 307 1.00
ACGTcount: A:0.34, C:0.22, G:0.11, T:0.33
Consensus pattern (320 bp):
CCTAATTTTGACTTTTCAACAATTTTGTCTCCCATGGCCGGCCATCACACTTTCAATGGCCTAAT
TTCACTTTAAATACCCCCAATCTAAGATACAAGGCAATTTAACACCTTTAGGTATTAAAACACAA
CTTTTACCTTTTACGCGATTTAGTCCTTTTTCGAAATTGGACTAGAAATTGCTAAAATTAACTTA
CCAAAATTTACATGAACTTATAAAATTATATTATAACACATAAAATAATACTAAAAAAATTTTCT
CTAGCCTCAAAATAGTGGTCCCGAAACCACTATTTCGACTAGGCCCAAAATCGGGCTATT
Found at i:80755343 original size:40 final size:40
Alignment explanation
Indices: 80755249--80755349 Score: 152
Period size: 40 Copynumber: 2.5 Consensus size: 40
80755239 TGTTATACTC
*
80755249 TCTGTCTGGAGTGTTTCGGTTGGATTAGCTCTTATGAGCT
1 TCTGTCTGGAGTGTTTCAGTTGGATTAGCTCTTATGAGCT
* *
80755289 TCTGTCCGGCGTGTTTCAGTTGGATTAGCTCTTATGAGCT
1 TCTGTCTGGAGTGTTTCAGTTGGATTAGCTCTTATGAGCT
80755329 TCTGTCT--AGTGTGTTCAGTTG
1 TCTGTCTGGAGTGT-TTCAGTTG
80755350 ATCTGACTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
38 4 0.07
39 8 0.15
40 43 0.78
ACGTcount: A:0.12, C:0.17, G:0.29, T:0.43
Consensus pattern (40 bp):
TCTGTCTGGAGTGTTTCAGTTGGATTAGCTCTTATGAGCT
Found at i:80757581 original size:12 final size:12
Alignment explanation
Indices: 80757566--80757596 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
80757556 TTCTCTTTTA
80757566 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
80757578 TTTTTCTTTCTC
1 TTTTTCTTTCCC
80757590 TTTTTCT
1 TTTTTCT
80757597 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:80757697 original size:16 final size:16
Alignment explanation
Indices: 80757676--80757706 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80757666 TTTATTATTT
80757676 TATTAACATAATATAA
1 TATTAACATAATATAA
*
80757692 TATTAATATAATATA
1 TATTAACATAATATA
80757707 TTAAAATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:80760626 original size:30 final size:32
Alignment explanation
Indices: 80760566--80760629 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
80760556 CACTTATTTT
80760566 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
80760599 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
80760630 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:80760891 original size:41 final size:41
Alignment explanation
Indices: 80760846--80760960 Score: 212
Period size: 41 Copynumber: 2.8 Consensus size: 41
80760836 ACCGGCTCTT
80760846 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
80760887 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
* *
80760928 AGCCTGCTAGACTTATAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
80760961 TAACGATAAA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:80768210 original size:30 final size:32
Alignment explanation
Indices: 80768150--80768213 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
80768140 CACTTATTTT
80768150 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
80768183 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
80768214 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:80768475 original size:41 final size:41
Alignment explanation
Indices: 80768430--80768585 Score: 285
Period size: 41 Copynumber: 3.8 Consensus size: 41
80768420 ACCGGCTCTT
*
80768430 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
80768471 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
80768512 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
* *
80768553 AGCCTGCTAGACTTATAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
80768586 TAACGATAAA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 112 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:80771526 original size:15 final size:15
Alignment explanation
Indices: 80771485--80771532 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
80771475 CTTTATAAAA
*
80771485 TGAAAATTTAATTAT
1 TGAAAATTTAAGTAT
*
80771500 TGGAAAA-ATAAGTAT
1 T-GAAAATTTAAGTAT
*
80771515 TGAAAATTTAAGTGT
1 TGAAAATTTAAGTAT
80771530 TGA
1 TGA
80771533 GTTTATGTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
14 5 0.19
15 17 0.63
16 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.38
Consensus pattern (15 bp):
TGAAAATTTAAGTAT
Found at i:80771789 original size:31 final size:31
Alignment explanation
Indices: 80771751--80771818 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
80771741 AGCAGTTTTC
80771751 ATTGTGAGTCATCATAATGTTTAAAAAATTA
1 ATTGTGAGTCATCATAATGTTTAAAAAATTA
80771782 ATTGTGAGTCATCATAATGTTTAAAAAATTA
1 ATTGTGAGTCATCATAATGTTTAAAAAATTA
80771813 AGTTGT
1 A-TTGT
80771819 TGAAAATATT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 32 0.89
32 4 0.11
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (31 bp):
ATTGTGAGTCATCATAATGTTTAAAAAATTA
Found at i:80781181 original size:23 final size:23
Alignment explanation
Indices: 80781155--80781208 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
80781145 CTATATAACA
* *
80781155 GGAAGCTCATAAA-AGCCATAATC
1 GGAAGCTCACAAAGAACCAT-ATC
*
80781178 GGAAGTTCACAAAGAACCATATC
1 GGAAGCTCACAAAGAACCATATC
*
80781201 GGGAGCTC
1 GGAAGCTC
80781209 CAGATAGCCA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (23 bp):
GGAAGCTCACAAAGAACCATATC
Found at i:80781228 original size:46 final size:49
Alignment explanation
Indices: 80781178--80781286 Score: 120
Period size: 46 Copynumber: 2.3 Consensus size: 49
80781168 AGCCATAATC
* *
80781178 GGAAGTTCACAAAGAAC-CATATCGGG-AGCTC-CAGATAGCCAATTT-A
1 GGAAGTTCACAAAGAACAC-TATCGGGAAGCTCACAAAGAGCCAATTTAA
**
80781224 GGAAGTTCA-AGCGAACACTATCGGGAAGCTCACAAAGAGCCAATTTAACA
1 GGAAGTTCACAAAGAACACTATCGGGAAGCTCACAAAGAGCCAATTT-A-A
80781274 GGAAGTTCACAAA
1 GGAAGTTCACAAA
80781287 ACCCTTTAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
45 12 0.24
46 15 0.30
47 12 0.24
50 10 0.20
51 1 0.02
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.17
Consensus pattern (49 bp):
GGAAGTTCACAAAGAACACTATCGGGAAGCTCACAAAGAGCCAATTTAA
Found at i:80795480 original size:30 final size:32
Alignment explanation
Indices: 80795420--80795483 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
80795410 CACTTATTTT
80795420 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
80795453 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
80795484 ATACATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:80795745 original size:41 final size:41
Alignment explanation
Indices: 80795700--80795896 Score: 367
Period size: 41 Copynumber: 4.8 Consensus size: 41
80795690 ACCGGCTCTT
*
80795700 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
80795741 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
80795782 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
80795823 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
* *
80795864 AGCCTGCTAGACTTATAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
80795897 TAACGATAAA
Statistics
Matches: 153, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 153 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:80802877 original size:12 final size:12
Alignment explanation
Indices: 80802862--80802892 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
80802852 TTCTCTTTTA
80802862 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
80802874 TTTTTCTTTCTC
1 TTTTTCTTTCCC
80802886 TTTTTCT
1 TTTTTCT
80802893 CCCCTACTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:80802947 original size:8 final size:8
Alignment explanation
Indices: 80802934--80802964 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
80802924 TTTCCTTTTG
80802934 TTTCTTTA
1 TTTCTTTA
80802942 TTTCTTTA
1 TTTCTTTA
80802950 TTTCTTTA
1 TTTCTTTA
*
80802958 ATTCTTT
1 TTTCTTT
80802965 TATACTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTCTTTA
Found at i:80802966 original size:17 final size:17
Alignment explanation
Indices: 80802928--80802967 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
80802918 TTTCTATTTC
* *
80802928 CTTTTGTTTCTTTATTT
1 CTTTTATTTCTTTAATT
80802945 C-TTTATTTCTTTAATT
1 CTTTTATTTCTTTAATT
80802961 CTTTTAT
1 CTTTTAT
80802968 ACTTTATTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.12, C:0.12, G:0.03, T:0.72
Consensus pattern (17 bp):
CTTTTATTTCTTTAATT
Found at i:80803001 original size:16 final size:16
Alignment explanation
Indices: 80802980--80803010 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80802970 TTTATTATTT
80802980 TATTAACATAATATAA
1 TATTAACATAATATAA
*
80802996 TATTAATATAATATA
1 TATTAACATAATATA
80803011 TTAAAATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATTAACATAATATAA
Found at i:80806838 original size:12 final size:12
Alignment explanation
Indices: 80806821--80806845 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
80806811 TACACATGCC
80806821 ATTGTTATTGAA
1 ATTGTTATTGAA
80806833 ATTGTTATTGAA
1 ATTGTTATTGAA
80806845 A
1 A
80806846 AGCATGATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (12 bp):
ATTGTTATTGAA
Found at i:80807690 original size:29 final size:29
Alignment explanation
Indices: 80807658--80807717 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
80807648 AAAAAACAAA
80807658 AAGCAAACAAGTTTACCAAAAAATGCCAC
1 AAGCAAACAAGTTTACCAAAAAATGCCAC
*
80807687 AAGCAAACAAGTTTACCCAAAAATGCCAC
1 AAGCAAACAAGTTTACCAAAAAATGCCAC
80807716 AA
1 AA
80807718 CACATATTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.52, C:0.25, G:0.10, T:0.13
Consensus pattern (29 bp):
AAGCAAACAAGTTTACCAAAAAATGCCAC
Found at i:80808837 original size:15 final size:15
Alignment explanation
Indices: 80808817--80808847 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80808807 GTCGTGTAAG
80808817 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
80808832 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
80808847 T
1 T
80808848 ATATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:80809037 original size:17 final size:17
Alignment explanation
Indices: 80809004--80809042 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
80808994 TAAGCTTTTG
80809004 ATTTTATATGAGAGAAC
1 ATTTTATATGAGAGAAC
*
80809021 AATTTTATAT-TGAGAAC
1 -ATTTTATATGAGAGAAC
80809038 ATTTT
1 ATTTT
80809043 CCACAATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 5 0.25
17 6 0.30
18 9 0.45
ACGTcount: A:0.38, C:0.05, G:0.13, T:0.44
Consensus pattern (17 bp):
ATTTTATATGAGAGAAC
Found at i:80809808 original size:15 final size:15
Alignment explanation
Indices: 80809784--80809813 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
80809774 TGGAGATCGA
*
80809784 GGAAATGGTCGTGGT
1 GGAAAAGGTCGTGGT
80809799 GGAAAAGGTCGTGGT
1 GGAAAAGGTCGTGGT
80809814 CAAGAAGGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.47, T:0.23
Consensus pattern (15 bp):
GGAAAAGGTCGTGGT
Found at i:80813172 original size:15 final size:15
Alignment explanation
Indices: 80813152--80813182 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
80813142 GTCATGTAAG
80813152 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
80813167 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
80813182 T
1 T
80813183 ATATTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:80824510 original size:18 final size:17
Alignment explanation
Indices: 80824471--80824568 Score: 133
Period size: 18 Copynumber: 5.5 Consensus size: 17
80824461 AATGATATGT
80824471 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
* *
80824488 AATCTTAAATATGATCGC
1 AATCTTAGATATGAT-AC
80824506 AATCTTAGATATGATAC
1 AATCTTAGATATGATAC
*
80824523 AATCTTAGATATGATTGC
1 AATCTTAGATATGA-TAC
80824541 AATCTTAGATATGATATAC
1 AATCTTAGATATG--ATAC
80824560 AATCTTAGA
1 AATCTTAGA
80824569 AGATAGGATT
Statistics
Matches: 71, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
17 29 0.41
18 30 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
AATCTTAGATATGATAC
Found at i:80824511 original size:35 final size:35
Alignment explanation
Indices: 80824471--80824566 Score: 156
Period size: 35 Copynumber: 2.7 Consensus size: 35
80824461 AATGATATGT
80824471 AATCTTAGATATGATACAATCTTAAATATGATCGC
1 AATCTTAGATATGATACAATCTTAAATATGATCGC
* *
80824506 AATCTTAGATATGATACAATCTTAGATATGATTGC
1 AATCTTAGATATGATACAATCTTAAATATGATCGC
80824541 AATCTTAGATATGATATACAATCTTA
1 AATCTTAGATATG--ATACAATCTTA
80824567 GAAGATAGGA
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
35 46 0.81
37 11 0.19
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.36
Consensus pattern (35 bp):
AATCTTAGATATGATACAATCTTAAATATGATCGC
Found at i:80824892 original size:16 final size:16
Alignment explanation
Indices: 80824871--80824904 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
80824861 CTTATTTTTA
80824871 ATTTATTAT-TTATATT
1 ATTTATTATATTAT-TT
80824887 ATTTATTATATTATTT
1 ATTTATTATATTATTT
80824903 AT
1 AT
80824905 ATTTTCAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (16 bp):
ATTTATTATATTATTT
Found at i:80824939 original size:7 final size:7
Alignment explanation
Indices: 80824922--80825028 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
80824912 AAATTTGTAA
80824922 ATTAT-T
1 ATTATAT
80824928 ATTATAT
1 ATTATAT
80824935 ATTATAT
1 ATTATAT
80824942 -TT-TA-
1 ATTATAT
80824946 ACTTATAT
1 A-TTATAT
80824954 ATCTTATAT
1 A--TTATAT
*
80824963 ATTTATTT
1 A-TTATAT
80824971 ATT-TAT
1 ATTATAT
*
80824977 ATTATAC
1 ATTATAT
80824984 ATTAT-T
1 ATTATAT
* *
80824990 -TTAAAA
1 ATTATAT
*
80824996 ACTTACAT
1 A-TTATAT
*
80825004 -TTTTAT
1 ATTATAT
80825010 ATTATAT
1 ATTATAT
*
80825017 ATTATAA
1 ATTATAT
80825024 ATTAT
1 ATTAT
80825029 TTCATTTATT
Statistics
Matches: 77, Mismatches: 13, Indels: 21
0.69 0.12 0.19
Matches are distributed among these distances:
5 5 0.06
6 18 0.23
7 35 0.45
8 11 0.14
9 8 0.10
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (7 bp):
ATTATAT
Found at i:80824972 original size:21 final size:21
Alignment explanation
Indices: 80824930--80825064 Score: 65
Period size: 21 Copynumber: 6.7 Consensus size: 21
80824920 AAATTATTAT
*
80824930 TATATATTATAT-TTTAACTTA
1 TATATATTATATATTT-ATTTA
*
80824951 TATATCTTATATATTTATTTA
1 TATATATTATATATTTATTTA
* *
80824972 TTTATATTATACA-TTATTT-
1 TATATATTATATATTTATTTA
* * * * *
80824991 TAAAAACTTACATTTTTATAT-
1 TATATA-TTATATATTTATTTA
*
80825012 TATATATTATA-AATTATTTCA
1 TATATATTATATATTTATTT-A
80825033 T-T-TATTAT-TA-TT-TTTA
1 TATATATTATATATTTATTTA
*
80825049 TATACTATCATATATT
1 TATA-TATTATATATT
80825065 ATCTATTTTA
Statistics
Matches: 84, Mismatches: 19, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
16 2 0.02
17 4 0.05
18 2 0.02
19 20 0.24
20 17 0.20
21 36 0.43
22 3 0.04
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (21 bp):
TATATATTATATATTTATTTA
Found at i:80828384 original size:2 final size:2
Alignment explanation
Indices: 80828377--80828411 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
80828367 AGAAGGAAAA
80828377 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
80828412 AAAGGGTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:80830939 original size:13 final size:12
Alignment explanation
Indices: 80830917--80830971 Score: 76
Period size: 13 Copynumber: 4.5 Consensus size: 12
80830907 CTTCTATTTC
80830917 AAAAAAAAAGAG
1 AAAAAAAAAGAG
80830929 AAAAAATAAAGA-
1 AAAAAA-AAAGAG
*
80830941 AAAGAAAAAGAG
1 AAAAAAAAAGAG
80830953 AAAAAATAAAGAG
1 AAAAAA-AAAGAG
80830966 AAAAAA
1 AAAAAA
80830972 GAAAAAAATG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
11 5 0.13
12 16 0.42
13 17 0.45
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.04
Consensus pattern (12 bp):
AAAAAAAAAGAG
Done.