Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 258 of 259
Found at i:81128160 original size:56 final size:56
Alignment explanation
Indices: 81128098--81128231 Score: 232
Period size: 56 Copynumber: 2.4 Consensus size: 56
81128088 GAATATATGA
81128098 ACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
*
81128154 ACTATGTGTGCGAAATTATTAACTGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
1 ACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
*
81128210 ACTGCGTGTGTGCGAAATTATT
1 ACT--ATGTGTGCGAAATTATT
81128232 TAAGGAATAT
Statistics
Matches: 74, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
56 58 0.78
58 16 0.22
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.29
Consensus pattern (56 bp):
ACTATGTGTGCGAAATTATTAACCGAGCACTATGTGTGCGAGATCGGGTGTAAGGC
Found at i:81128219 original size:28 final size:28
Alignment explanation
Indices: 81128124--81128212 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
81128114 TATTAACCGA
81128124 GCACTATGTGTGCGAGATCGGGTGTAAG
1 GCACTATGTGTGCGAGATCGGGTGTAAG
* **
81128152 GCACTATGTGTGCGAAAT--TAT-TAACTG
1 GCACTATGTGTGCGAGATCGGGTGTAA--G
81128179 AGCACTATGTGTGCGAGATCGGGTGTAAG
1 -GCACTATGTGTGCGAGATCGGGTGTAAG
81128208 GCACT
1 GCACT
81128213 GCGTGTGTGC
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
25 3 0.06
26 1 0.02
27 1 0.02
28 39 0.80
29 1 0.02
30 1 0.02
31 3 0.06
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.27
Consensus pattern (28 bp):
GCACTATGTGTGCGAGATCGGGTGTAAG
Found at i:81136316 original size:14 final size:14
Alignment explanation
Indices: 81136297--81136326 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81136287 AACAATTATC
*
81136297 TTTAATTTTGGGTT
1 TTTAATTCTGGGTT
81136311 TTTAATTCTGGGTT
1 TTTAATTCTGGGTT
81136325 TT
1 TT
81136327 ATTTGAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.03, G:0.20, T:0.63
Consensus pattern (14 bp):
TTTAATTCTGGGTT
Found at i:81139785 original size:15 final size:15
Alignment explanation
Indices: 81139765--81139797 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
81139755 CAAAACAAAT
81139765 TGAGTTGAAGTTTTA
1 TGAGTTGAAGTTTTA
81139780 TGAGTTGAAGTTTTA
1 TGAGTTGAAGTTTTA
81139795 TGA
1 TGA
81139798 TAAAATCAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (15 bp):
TGAGTTGAAGTTTTA
Found at i:81146823 original size:27 final size:28
Alignment explanation
Indices: 81146793--81146849 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
81146783 AGAAATCAAC
81146793 GTACC-CTTTTTATTTTGGTATTGTTAT
1 GTACCTCTTTTTATTTTGGTATTGTTAT
*
81146820 GTACCTTTTTTTATTTTGGTATTGTTAT
1 GTACCTCTTTTTATTTTGGTATTGTTAT
81146848 GT
1 GT
81146850 GATGTTTTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.14, C:0.09, G:0.16, T:0.61
Consensus pattern (28 bp):
GTACCTCTTTTTATTTTGGTATTGTTAT
Found at i:81147266 original size:80 final size:80
Alignment explanation
Indices: 81147161--81147316 Score: 276
Period size: 80 Copynumber: 1.9 Consensus size: 80
81147151 AAAAGGATTC
*
81147161 ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTGTTTTTGTATGCTTTAAAAAT
1 ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
81147226 ATAAATTTCAAATTG
66 ATAAATTTCAAATTG
* * *
81147241 ATCCGCACATTAAAATCGTGTTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
1 ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
81147306 ATAAATTTCAA
66 ATAAATTTCAA
81147317 CAATAATGTT
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 72 1.00
ACGTcount: A:0.36, C:0.10, G:0.08, T:0.47
Consensus pattern (80 bp):
ATCCACACATTAAAATCATGCTTTAATTTTGTTATAATATTATTATTTTTGTATGCTTTAAAAAT
ATAAATTTCAAATTG
Found at i:81147803 original size:16 final size:16
Alignment explanation
Indices: 81147784--81147847 Score: 51
Period size: 16 Copynumber: 4.0 Consensus size: 16
81147774 TTGTAAGTTC
81147784 AATTATTTTAGATTTT
1 AATTATTTTAGATTTT
*
81147800 AATTATTTT-GAATTTG
1 AATTATTTTAG-ATTTT
* *
81147816 AGTTACTTGTA-ATTTT
1 AATTA-TTTTAGATTTT
* *
81147832 AATTAATTTAAATTTT
1 AATTATTTTAGATTTT
81147848 CAAGGTCAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
15 4 0.11
16 30 0.81
17 3 0.08
ACGTcount: A:0.33, C:0.02, G:0.08, T:0.58
Consensus pattern (16 bp):
AATTATTTTAGATTTT
Found at i:81148597 original size:21 final size:20
Alignment explanation
Indices: 81148573--81148619 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 20
81148563 AAATGATAGC
81148573 AAAATAAGAT-AAAACAATAA
1 AAAATAAGATCAAAA-AATAA
*
81148593 TAAAATAATATCAAAAAATAA
1 -AAAATAAGATCAAAAAATAA
81148614 AAAATA
1 AAAATA
81148620 GATTTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 6 0.25
21 14 0.58
22 4 0.17
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.19
Consensus pattern (20 bp):
AAAATAAGATCAAAAAATAA
Found at i:81148608 original size:11 final size:11
Alignment explanation
Indices: 81148529--81148612 Score: 50
Period size: 11 Copynumber: 7.7 Consensus size: 11
81148519 TACAATATTT
*
81148529 AAATAATAAACA
1 AAATAAT-ATCA
*
81148541 AAATAGTATCA
1 AAATAATATCA
*
81148552 ACATAATAGT-A
1 AAATAATA-TCA
* *
81148563 AAATGATAGCA
1 AAATAATATCA
*
81148574 AAATAAGAT-A
1 AAATAATATCA
*
81148584 AAACAATAAT-A
1 AAATAAT-ATCA
81148595 AAATAATATCA
1 AAATAATATCA
81148606 AAA-AATA
1 AAATAATA
81148613 AAAAATAGAT
Statistics
Matches: 55, Mismatches: 13, Indels: 10
0.71 0.17 0.13
Matches are distributed among these distances:
10 12 0.22
11 36 0.65
12 7 0.13
ACGTcount: A:0.65, C:0.07, G:0.06, T:0.21
Consensus pattern (11 bp):
AAATAATATCA
Found at i:81154949 original size:30 final size:31
Alignment explanation
Indices: 81154909--81154977 Score: 104
Period size: 30 Copynumber: 2.3 Consensus size: 31
81154899 AACTCAACAT
81154909 TTTAATGACTTAGATAAAA-CTTTTGAATAA
1 TTTAATGACTTAGATAAAATCTTTTGAATAA
* * *
81154939 TTTAGTGACTTATATAAAATTTTTTGAATAA
1 TTTAATGACTTAGATAAAATCTTTTGAATAA
81154970 TTTAATGA
1 TTTAATGA
81154978 TAATTTTATA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 17 0.50
31 17 0.50
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (31 bp):
TTTAATGACTTAGATAAAATCTTTTGAATAA
Found at i:81155450 original size:21 final size:22
Alignment explanation
Indices: 81155424--81155464 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
81155414 TTCAAAGTTT
81155424 TTTTAAT-A-ATTTTATTATAGA
1 TTTTAATCATATTTT-TTATAGA
81155445 TTTTAATCATATTTTTTATA
1 TTTTAATCATATTTTTTATA
81155465 TAATATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 6 0.33
23 5 0.28
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAATCATATTTTTTATAGA
Found at i:81156246 original size:22 final size:21
Alignment explanation
Indices: 81156213--81156253 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
81156203 TATTTCGTCT
81156213 TTGAATTATATTATTTTTTATA
1 TTGAATTATATT-TTTTTTATA
81156235 TTGATATT-TATTTTTTTTA
1 TTGA-ATTATATTTTTTTTA
81156254 ATTTAGTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.39
22 8 0.44
23 3 0.17
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TTGAATTATATTTTTTTTATA
Found at i:81156440 original size:9 final size:9
Alignment explanation
Indices: 81156419--81156568 Score: 52
Period size: 9 Copynumber: 15.6 Consensus size: 9
81156409 AAGGTTGTAA
81156419 AAAAATTATT
1 AAAAATTA-T
81156429 AAAAATTAT
1 AAAAATTAT
***
81156438 AAAAAAGCT
1 AAAAATTAT
*
81156447 GAAAATTAT
1 AAAAATTAT
*
81156456 AAAAAAATTGT
1 --AAAAATTAT
81156467 AAAAA-TAGT
1 AAAAATTA-T
*
81156476 AAAAA-AATT
1 AAAAATTA-T
* *
81156485 AAAATTTGT
1 AAAAATTAT
81156494 AAATAATTAT
1 AAA-AATTAT
* *
81156504 CAAATATTTT
1 -AAAAATTAT
*
81156514 AAAAATATTTT
1 -AAAA-ATTAT
* *
81156525 AAAATTGTAA
1 AAAAAT-TAT
81156535 AAAAAGTTATT
1 AAAAA-TTA-T
81156546 AAAAATTAT
1 AAAAATTAT
*
81156555 AAAAATTGT
1 AAAAATTAT
81156564 AAAAA
1 AAAAA
81156569 AATTAACAAA
Statistics
Matches: 103, Mismatches: 27, Indels: 21
0.68 0.18 0.14
Matches are distributed among these distances:
8 1 0.01
9 48 0.47
10 33 0.32
11 21 0.20
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (9 bp):
AAAAATTAT
Found at i:81156496 original size:18 final size:20
Alignment explanation
Indices: 81156415--81156484 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 20
81156405 AAGAAAGGTT
*
81156415 GTAAAAAAATTATTAAAAATTA
1 GTAAAAAAATT-GTAAAAA-TA
** *
81156437 -TAAAAAAGCTG-AAAATTA
1 GTAAAAAAATTGTAAAAATA
81156455 -TAAAAAAATTGTAAAAATA
1 GTAAAAAAATTGTAAAAATA
81156474 GTAAAAAAATT
1 GTAAAAAAATT
81156485 AAAATTTGTA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
18 11 0.28
19 10 0.26
20 10 0.26
21 8 0.21
ACGTcount: A:0.64, C:0.01, G:0.07, T:0.27
Consensus pattern (20 bp):
GTAAAAAAATTGTAAAAATA
Found at i:81156573 original size:20 final size:20
Alignment explanation
Indices: 81156413--81156559 Score: 90
Period size: 20 Copynumber: 7.5 Consensus size: 20
81156403 TAAAGAAAGG
81156413 TTGTAAAAAAATTATTAAAAA
1 TTGTAAAAAAATTA-TAAAAA
* ** *
81156434 TTAT-AAAAAA-GCTGAAAA
1 TTGTAAAAAAATTATAAAAA
* *
81156452 TTATAAAAAAATTGTAAAAA
1 TTGTAAAAAAATTATAAAAA
* *
81156472 TAGTAAAAAAA-T-TAAAAT
1 TTGTAAAAAAATTATAAAAA
* *
81156490 TTGT-AAATAATTATCAAATA
1 TTGTAAAAAAATTAT-AAAAA
* * *
81156510 TTTTAAAAATATT-TTAAAA
1 TTGTAAAAAAATTATAAAAA
81156529 TTGTAAAAAAAGTTATTAAAAA
1 TTGTAAAAAAA-TTA-TAAAAA
*
81156551 TTATAAAAA
1 TTGTAAAAA
81156560 TTGTAAAAAA
Statistics
Matches: 94, Mismatches: 23, Indels: 17
0.70 0.17 0.13
Matches are distributed among these distances:
17 5 0.05
18 18 0.19
19 20 0.21
20 29 0.31
21 9 0.10
22 13 0.14
ACGTcount: A:0.60, C:0.01, G:0.05, T:0.33
Consensus pattern (20 bp):
TTGTAAAAAAATTATAAAAA
Found at i:81162314 original size:22 final size:22
Alignment explanation
Indices: 81162289--81162341 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
81162279 TTAAATTTTT
81162289 TACTTAAATAATGGGTA-TTTGG
1 TACTTAAATAATGGGTACTTT-G
*
81162311 TACTTAAATAATGGGTACTTTT
1 TACTTAAATAATGGGTACTTTG
81162333 TACTTAAAT
1 TACTTAAAT
81162342 TTAAAAATTC
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 26 0.90
23 3 0.10
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (22 bp):
TACTTAAATAATGGGTACTTTG
Found at i:81166142 original size:14 final size:14
Alignment explanation
Indices: 81166123--81166154 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
81166113 TAACTAATTT
81166123 TATAGTTATATATA
1 TATAGTTATATATA
*
81166137 TATAGTTATATATT
1 TATAGTTATATATA
81166151 TATA
1 TATA
81166155 TTAAGGATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (14 bp):
TATAGTTATATATA
Found at i:81170680 original size:29 final size:30
Alignment explanation
Indices: 81170629--81170697 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
81170619 TGAATATAAG
*
81170629 TTTGATTTAATGTGTAATATTATATATAAAAT
1 TTTGATTT--TGTGTAATATTATAAATAAAAT
* *
81170661 TTT-ATTTTGTGTGATTTTATAAATAAAAT
1 TTTGATTTTGTGTAATATTATAAATAAAAT
81170690 TTTGATTT
1 TTTGATTT
81170698 GATTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
29 22 0.67
30 4 0.12
31 4 0.12
32 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.10, T:0.55
Consensus pattern (30 bp):
TTTGATTTTGTGTAATATTATAAATAAAAT
Found at i:81179299 original size:17 final size:17
Alignment explanation
Indices: 81179279--81179312 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
81179269 ATTTTGATCT
81179279 AAGATACGTTCTTTTAC
1 AAGATACGTTCTTTTAC
*
81179296 AAGATATGTTCTTTTAC
1 AAGATACGTTCTTTTAC
81179313 TCGTCGATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.12, T:0.44
Consensus pattern (17 bp):
AAGATACGTTCTTTTAC
Found at i:81179737 original size:31 final size:31
Alignment explanation
Indices: 81179699--81179774 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
81179689 GAAAAAATTT
*
81179699 AATAATTCGATAACT-TAAATGAAAAT-TTTTA
1 AATAATTCAATAA-TGTAAAT-AAAATCTTTTA
*
81179730 AATAATTCAATAATGTAAATAAATTCTTTTA
1 AATAATTCAATAATGTAAATAAAATCTTTTA
*
81179761 AATAATTTAATAAT
1 AATAATTCAATAAT
81179775 TATCTTATAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
30 5 0.12
31 35 0.88
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.41
Consensus pattern (31 bp):
AATAATTCAATAATGTAAATAAAATCTTTTA
Found at i:81180770 original size:20 final size:20
Alignment explanation
Indices: 81180726--81180764 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81180716 TATGTACATA
* *
81180726 GATTAATTTATTTATTTATG
1 GATTAATTAATTAATTTATG
81180746 GATTAATTAATTAATTTAT
1 GATTAATTAATTAATTTAT
81180765 TTATTAGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
GATTAATTAATTAATTTATG
Found at i:81182283 original size:14 final size:14
Alignment explanation
Indices: 81182258--81182297 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
81182248 ATTTTATCTC
81182258 AAATTT-TAATTTA
1 AAATTTATAATTTA
81182271 AAATTTATAATTTA
1 AAATTTATAATTTA
* *
81182285 AGATTTAAAATTT
1 AAATTTATAATTT
81182298 TAGAGTACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 6 0.25
14 18 0.75
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
AAATTTATAATTTA
Found at i:81183033 original size:12 final size:12
Alignment explanation
Indices: 81183016--81183041 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81183006 CAAAACAGGC
81183016 TTTTAGCGGCGT
1 TTTTAGCGGCGT
81183028 TTTTAGCGGCGT
1 TTTTAGCGGCGT
81183040 TT
1 TT
81183042 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:81183411 original size:114 final size:114
Alignment explanation
Indices: 81183110--81183476 Score: 533
Period size: 114 Copynumber: 3.2 Consensus size: 114
81183100 AAAATAAGCA
* * * * *
81183110 TTAGCGGCGTATTTGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGTCGTTTCTCGAGCTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTT
* * *
81183174 TCGGGGATTTAGAGGCGTTTATAAGAAAGCGCCGCTAATGCTCAAGGCT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
81183223 TTAGCGGCATTTTTGGG-AAGCGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTT
* * * *
81183287 TCGGGGATTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCTCGGGGTT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
81183336 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTTTAAGCTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTT
* *
81183401 TCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGC-CTAGGACT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTC-AGGGCT
* *
81183450 TTAGCGGCGTTTTTGGTAAAGCGCCGC
1 TTAGCGGCATTTTTGGGAAAGCGCCGC
81183477 TAATGCCCAG
Statistics
Matches: 227, Mismatches: 24, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
112 9 0.04
113 108 0.48
114 110 0.48
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (114 bp):
TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTTTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:81183472 original size:41 final size:40
Alignment explanation
Indices: 81183408--81183517 Score: 150
Period size: 41 Copynumber: 2.7 Consensus size: 40
81183398 CTTTCGGGGA
*
81183408 TTTAGCGGCGTTTTTAAGG-AAGCGCCGCTAATGCCTAGGAC
1 TTTAGCGGCGTTTTT--GGAAAGCGCCGCTAATGCCCAGGAC
*
81183449 TTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGCCCAGGGC
1 TTTAGCGGCGTTTTTGG-AAAGCGCCGCTAATGCCCAGGAC
*
81183490 TTTAGCGGCATTTTTGGAAAAGCGCCGC
1 TTTAGCGGCGTTTTTGG-AAAGCGCCGC
81183518 AAAAAAACCT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
39 2 0.03
41 61 0.97
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTGGAAAGCGCCGCTAATGCCCAGGAC
Found at i:81183576 original size:155 final size:155
Alignment explanation
Indices: 81183294--81183593 Score: 453
Period size: 155 Copynumber: 1.9 Consensus size: 155
81183284 CTTTCGGGGA
* * * *
81183294 TTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCTCGGGGTTTTAGCGGCATTTTTGGGAAAGCG
1 TTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGCG
*
81183359 CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTTTAAGCTTTCGGGGATTTAGCGGCG-TTTTT
66 CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTT
81183423 -AAGGAAGCGCCGCTAATGCCTAGGAC
131 GAA--AAGCGCCGCTAATGCCTAGGAC
* * *
81183449 TTTAGCGGCGTTTTT-GGTAAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGC
1 TTTAGCGGCATTTTTAAG-AAAGCACCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGC
* * *
81183513 GCCGCAAAAAAACCTAAGCTCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTTGCGGCGTTTTT
65 GCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTT
81183578 TGAAAAGCGCCGCTAA
130 TGAAAAGCGCCGCTAA
81183594 ATTTTTTTTA
Statistics
Matches: 131, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
154 1 0.01
155 123 0.94
156 5 0.04
157 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (155 bp):
TTTAGCGGCATTTTTAAGAAAGCACCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGCG
CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTT
GAAAAGCGCCGCTAATGCCTAGGAC
Found at i:81183861 original size:15 final size:14
Alignment explanation
Indices: 81183837--81183877 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
81183827 GTTCATATTT
81183837 TATGGTTTAGGGAG
1 TATGGTTTAGGGAG
*
81183851 TATGAGTTTAGGGAT
1 TATG-GTTTAGGGAG
*
81183866 TATGGATTAGGG
1 TATGGTTTAGGG
81183878 GTTGGGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (14 bp):
TATGGTTTAGGGAG
Found at i:81184170 original size:7 final size:7
Alignment explanation
Indices: 81184160--81184208 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
81184150 GATTTAAGGT
81184160 TTAGGGG
1 TTAGGGG
81184167 TTAGGGG
1 TTAGGGG
81184174 TTTAGGGG
1 -TTAGGGG
**
81184182 TTAGATG
1 TTAGGGG
81184189 TTAGGGG
1 TTAGGGG
* *
81184196 TTAAGAG
1 TTAGGGG
81184203 TTAGGG
1 TTAGGG
81184209 ATTTAAGGTT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.20, C:0.00, G:0.47, T:0.33
Consensus pattern (7 bp):
TTAGGGG
Found at i:81184177 original size:15 final size:15
Alignment explanation
Indices: 81184156--81184223 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
81184146 TTGAGATTTA
81184156 AGGTTTAGGGGTTAG
1 AGGTTTAGGGGTTAG
*
81184171 GGGTTTAGGGGTTAG
1 AGGTTTAGGGGTTAG
*
81184186 ATG-TTAGGGGTTA-
1 AGGTTTAGGGGTTAG
*
81184199 AGAG-TTAGGGATTTA-
1 AG-GTTTAGGG-GTTAG
81184214 AGGTTTAGGG
1 AGGTTTAGGG
81184224 ATTCAGGGGT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
13 1 0.02
14 18 0.40
15 26 0.58
ACGTcount: A:0.22, C:0.00, G:0.44, T:0.34
Consensus pattern (15 bp):
AGGTTTAGGGGTTAG
Found at i:81184177 original size:36 final size:36
Alignment explanation
Indices: 81184136--81184221 Score: 93
Period size: 36 Copynumber: 2.4 Consensus size: 36
81184126 TAGGGATTAT
* * *
81184136 GGTTTAAGGGTTGAGAT-TTAAGGTTTAGGGGTTAGG
1 GGTTTAAGGGTT-AGATGTTAAGGGTTAAGAGTTAGG
* *
81184172 GGTTTAGGGGTTAGATGTTAGGGGTTAAGAGTTAGG
1 GGTTTAAGGGTTAGATGTTAAGGGTTAAGAGTTAGG
* *
81184208 GATTTAAGGTTTAG
1 GGTTTAAGGGTTAG
81184222 GGATTCAGGG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
35 4 0.10
36 37 0.90
ACGTcount: A:0.23, C:0.00, G:0.41, T:0.36
Consensus pattern (36 bp):
GGTTTAAGGGTTAGATGTTAAGGGTTAAGAGTTAGG
Found at i:81184919 original size:147 final size:146
Alignment explanation
Indices: 81184712--81185310 Score: 1026
Period size: 146 Copynumber: 4.1 Consensus size: 146
81184702 AAATAGCTTA
*
81184712 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAAAAAATTTATAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTATAATAGCAAAACGGC
* * *
81184777 GCCGTTTTGTTCAAAATGAAAAAAAATTGCGGCGCATTATAAGAAGCGCCGCTAAAGGTAAGCAA
66 GTCGTTTTGTTCAAAATG-AAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
81184842 TAGCGGCG-TTTTCTAT
130 TAGCGGCGCTTTTCTAT
*
81184858 AAAAATGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAAATTTATAATAGCAAAACGG
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAT-AAAAAAAATTTATAATAGCAAAACGG
81184923 CGTCGTTTTGTTCAAAATGAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
65 CGTCGTTTTGTTCAAAATGAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
* *
81184988 TAGCGGCGTTTTTTTAT
130 TAGCGGCGCTTTTCTAT
*
81185005 AGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGG
1 A-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTATAATAGCAAAACGG
*
81185070 CGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGTCGCTAAAGGTAAGCA
65 CGTCGTTTTGTTCAAAATGAAAAAA-TTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
81185135 ATAGCGGCG-TTTTCTAT
129 ATAGCGGCGCTTTTCTAT
*
81185152 AAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAATAAAAAAAATTTATAATAGCAAAATGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTATAATAGCAAAACGGC
*
81185216 GTCGTTTTGTTCAAAATGAAAAAATTTACGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 GTCGTTTTGTTCAAAATGAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
81185281 AGCGGCGCTTTT-TAT
131 AGCGGCGCTTTTCTAT
81185296 AGAAAACGCCGCAAA
1 A-AAAACGCCGCAAA
81185311 GCAAAACGGC
Statistics
Matches: 433, Mismatches: 14, Indels: 13
0.94 0.03 0.03
Matches are distributed among these distances:
144 50 0.12
145 73 0.17
146 117 0.27
147 110 0.25
148 83 0.19
ACGTcount: A:0.45, C:0.14, G:0.17, T:0.24
Consensus pattern (146 bp):
AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTATAATAGCAAAACGGC
GTCGTTTTGTTCAAAATGAAAAAATTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
AGCGGCGCTTTTCTAT
Found at i:81185330 original size:105 final size:106
Alignment explanation
Indices: 81185205--81185416 Score: 372
Period size: 106 Copynumber: 2.0 Consensus size: 106
81185195 AATTTATAAT
*
81185205 AGCAAAATGGCGTCGTTTTGTTCAAAATGAAAAA-ATTTACGGCGCTTTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAATATTTACGGCGCTTTATAAGAAGCGCCGCTA
81185269 AAGGTAAGCAATAGCGGCGCTTTTTATAGAAAACGCCGCAA
66 AAGGTAAGCAATAGCGGCGCTTTTTATAGAAAACGCCGCAA
* * *
81185310 AGCAAAACGGCGTCGTTTTGTTTAAAATGAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAATATTTACGGCGCTTTATAAGAAGCGCCGCTA
*
81185375 AAGGTAAGCAATAGCGGCGTTTTTTATAGAAAACGCCGCAA
66 AAGGTAAGCAATAGCGGCGCTTTTTATAGAAAACGCCGCAA
81185416 A
1 A
81185417 AAATAAATCA
Statistics
Matches: 101, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
105 32 0.32
106 69 0.68
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.25
Consensus pattern (106 bp):
AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAATATTTACGGCGCTTTATAAGAAGCGCCGCTA
AAGGTAAGCAATAGCGGCGCTTTTTATAGAAAACGCCGCAA
Found at i:81185648 original size:539 final size:540
Alignment explanation
Indices: 81184766--81185845 Score: 1793
Period size: 539 Copynumber: 2.0 Consensus size: 540
81184756 AATTTATAAT
81184766 AGCAAAACGGCGCCGTTTTGTTCAAAATGAAAAAAAATTGCGGCGCATTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGCCGTTTTGTTCAAAATGAAAAAAAATTGCGGCGCATTATAAGAAGCGCCGCTA
*
81184831 AAGGTAAGCAATAGCGGCGTTTTCTATAAAAATGCCGCAAAAAATAAATCAATTTATAAAAAAAT
66 AAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTAT----AAAT
*
81184896 AAAAAAAAATTTATAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTGCGGCGCTTT
127 AAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTGCGGCGCTTT
*
81184961 ATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTTTATAGAAAACGCCGCAAAAAATAA
192 ATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTCTATAGAAAACGCCGCAAAAAATAA
*
81185026 ATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAA
257 ATCAATTTATAAAAAAATAAAAAAAATTTAAAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAA
*
81185091 AAAATTTTGCGGCGCTTTATAAGAAGCGTCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAA
322 AAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAA
* *
81185156 ACGCCGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAATTTATAATAGCAAAATGGCGTCGT
387 ACGCCGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGT
* *
81185221 TTTGTTCAAAATGAAAAAA-TTTACGGCGC-T-TTATAAGAAGCGCCGCTAAAGGTAAGCAATAG
452 TTTGTTCAAAATAAAAAAATTTTACGGCGCTTCTTAT-A-AAGCGCCGCTAAAGGTAAGAAATAG
81185283 CGGCGCTTTT-TATAGAAAACGCCGCAA
515 CGGCG-TTTTCTATA-AAAACGCCGCAA
* * *** *
81185310 AGCAAAACGGCGTCGTTTTGTTTAAAATGAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGCCGTTTTGTTCAAAATGAAAAAAAATTGCGGCGCATTATAAGAAGCGCCGCTA
*
81185375 AAGGTAAGCAATAGCGGCGTTTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTAT-AA-AAA
66 AAGGTAAGCAATAGCGGCGTTTTCTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAATAAA
*
81185438 AAAAAATTTAGAATAGCAAAACGTCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCT-
130 AAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAA-TTTGCGGCGCTT-TA
81185502 TATA-AAGCGCCGCTAAAGGTAAGCAATAGCGGCG-TTTTCTATA-AAAACGCCGCAAAAAATAA
193 TA-AGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTCTATAGAAAACGCCGCAAAAAATAA
81185564 ATCAATTTATAAAAAAATAAAAAAAAATTTAAAATAGCAAAACGGCGTCGTTTTGTTCAAAATGA
257 ATCAATTTATAAAAAAAT-AAAAAAAATTTAAAATAGCAAAACGGCGTCGTTTTGTTCAAAATGA
*
81185629 AAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAATCAATAGCGGCGTTTTCTATAAA
321 AAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAA
81185694 AACGCCGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCG
386 AACGCCGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCG
**
81185759 TTTTGTTCAAAATAAAAAAATTTTGTGGCGCTTCTTATAAAGCGCCGCTAAAGGTAAGAAATAGC
451 TTTTGTTCAAAATAAAAAAATTTTACGGCGCTTCTTATAAAGCGCCGCTAAAGGTAAGAAATAGC
81185824 GGCGTTTTCTATAAAAACGCCG
516 GGCGTTTTCTATAAAAACGCCG
81185846 TAAAAAATAA
Statistics
Matches: 507, Mismatches: 20, Indels: 23
0.92 0.04 0.04
Matches are distributed among these distances:
538 37 0.07
539 261 0.51
540 87 0.17
541 4 0.01
542 4 0.01
544 86 0.17
545 28 0.06
ACGTcount: A:0.42, C:0.15, G:0.18, T:0.25
Consensus pattern (540 bp):
AGCAAAACGGCGCCGTTTTGTTCAAAATGAAAAAAAATTGCGGCGCATTATAAGAAGCGCCGCTA
AAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAATAAAA
AAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTGCGGCGCTTTATAA
GAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTCTATAGAAAACGCCGCAAAAAATAAATCA
ATTTATAAAAAAATAAAAAAAATTTAAAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAA
TTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGC
CGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTG
TTCAAAATAAAAAAATTTTACGGCGCTTCTTATAAAGCGCCGCTAAAGGTAAGAAATAGCGGCGT
TTTCTATAAAAACGCCGCAA
Found at i:81185779 original size:145 final size:145
Alignment explanation
Indices: 81185310--81185872 Score: 917
Period size: 145 Copynumber: 3.9 Consensus size: 145
81185300 AACGCCGCAA
* *
81185310 AGCAAAACGGCGTCGTTTTGTTTAAAATGAAAAATTTTTGCGGCGC-T-TTATAAGAAGCGCCGC
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCTTAT-A-AAGCGCCGC
*
81185373 TAAAGGTAAGCAATAGCGGCGTTTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTAT---AA
64 TAAAGGTAAGCAATAGCGGCGTTTTCTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAAAA
81185435 A-AAAAAAAATTTAGAAT
128 ATAAAAAAAATTTAGAAT
*
81185452 AGCAAAACGTCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCTTATAAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCTTATAAAGCGCCGCTA
81185517 AAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAT
66 AAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAAT
*
81185582 AAAAAAAAATTTAAAAT
130 -AAAAAAAATTTAGAAT
81185599 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGC-T-TTATAAGAAGCGCCGC
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCTTAT-A-AAGCGCCGC
*
81185662 TAAAGGTAATCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
64 TAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
81185727 TAAAAAAAATTTAGAAT
129 TAAAAAAAATTTAGAAT
* *
81185744 AGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGTGGCGCTTCTTATAAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCTTATAAAGCGCCGCTA
* *
81185809 AAGGTAAGAAATAGCGGCGTTTTCTATAAAAACGCCGTAAAAAATAAATCAATTTATAAAAAAT
66 AAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAT
81185873 TTCCCAAAAT
Statistics
Matches: 396, Mismatches: 13, Indels: 21
0.92 0.03 0.05
Matches are distributed among these distances:
141 29 0.07
142 81 0.20
143 2 0.01
144 4 0.01
145 138 0.35
146 11 0.03
147 131 0.33
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (145 bp):
AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCTTATAAAGCGCCGCTA
AAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAATA
AAAAAAATTTAGAAT
Found at i:81185831 original size:292 final size:289
Alignment explanation
Indices: 81185310--81185871 Score: 1000
Period size: 292 Copynumber: 1.9 Consensus size: 289
81185300 AACGCCGCAA
* *
81185310 AGCAAAACGGCGTCGTTTTGTTTAAAATGAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTA
*
81185375 AAGGTAAGCAATAGCGGCGTTTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA
66 AAGGTAAGCAATAGCGGCGTTTTCTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA
* *
81185440 AAAATTTAGAATAGCAAAACGTCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTCTTAT
131 AAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGCGGCGCTTCTTAT
*
81185505 AAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAAT
196 AAAGCGCCGCTAAAGGTAAGAAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAAT
81185570 TTATAAAAAAATAAAAAAAAATTTAAAAT
261 TTATAAAAAAATAAAAAAAAATTTAAAAT
81185599 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTA
1 AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTA
*
81185664 AAGGTAATCAATAGCGGCGTTTTCTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAT
66 AAGGTAAGCAATAGCGGCGTTTTCTATAGAAAACGCCGCAAAAAATAAATCAATTTAT---AAA-
*
81185728 AAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGTGGCGCTTC
127 AAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGCGGCGCTTC
*
81185793 TTATAAAGCGCCGCTAAAGGTAAGAAATAGCGGCGTTTTCTATAAAAACGCCGTAAAAAATAAAT
192 TTATAAAGCGCCGCTAAAGGTAAGAAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAAT
81185858 CAATTTATAAAAAA
257 CAATTTATAAAAAA
81185872 TTTCCCAAAA
Statistics
Matches: 260, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
288 29 0.11
289 89 0.34
291 3 0.01
292 139 0.53
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.26
Consensus pattern (289 bp):
AGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTA
AAGGTAAGCAATAGCGGCGTTTTCTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA
AAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGCGGCGCTTCTTAT
AAAGCGCCGCTAAAGGTAAGAAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAAT
TTATAAAAAAATAAAAAAAAATTTAAAAT
Found at i:81187990 original size:25 final size:26
Alignment explanation
Indices: 81187942--81187990 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
81187932 TTTCAGTTTG
*
81187942 ATTATTTTTAGTTTTATATTTTTAGT
1 ATTATTTTTAGTTTTATATATTTAGT
81187968 ATTA-TTTTAGTTTCTATA-ATTTA
1 ATTATTTTTAGTTT-TATATATTTA
81187991 ACATATGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (26 bp):
ATTATTTTTAGTTTTATATATTTAGT
Found at i:81189846 original size:43 final size:43
Alignment explanation
Indices: 81189650--81189874 Score: 281
Period size: 43 Copynumber: 5.2 Consensus size: 43
81189640 GAATCGTACT
* *
81189650 TTTAGTGGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATTAAAGCGCCGCTAAAGATCATGTTC
* * *
81189693 TTTAGTGGCGTTTGTGATGAAAGCGCCACTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATTAAAGCGCCGCTAAAGATCATGTTC
* * *
81189736 TTTAGTGGCGTTTGTGATAAAAGCGCTGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATTAAAGCGCCGCTAAAGATCATGTTC
* * *
81189779 TTTAGCGGCGTTTATGAGTAAAGCGCCGCTAAAGAACATGTTC
1 TTTAGCGGCGTTTGTGATTAAAGCGCCGCTAAAGATCATGTTC
* * * * **
81189822 TTTAGCGGCGTTT-TGTTTTTAAGCGCCGTTAAAGAACATGACC
1 TTTAGCGGCGTTTGTG-ATTAAAGCGCCGCTAAAGATCATGTTC
81189865 TTTAGCGGCG
1 TTTAGCGGCG
81189875 CTTATTTCTG
Statistics
Matches: 164, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
42 2 0.01
43 162 0.99
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATTAAAGCGCCGCTAAAGATCATGTTC
Found at i:81196138 original size:129 final size:130
Alignment explanation
Indices: 81195919--81196240 Score: 481
Period size: 129 Copynumber: 2.5 Consensus size: 130
81195909 ATTCTAATGT
* * *
81195919 TATGTTTAAGAACGTGAACTTGAAA-ATTTG-GATTTAGGTTTCAATTACTATATAAATCGTGAG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAG-TTTAGATTTCAATTACTCTATAAATCGTGAG
* *
81195982 GAGAATGGAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTATATATCTCGAATTCAATTA
65 GAGAATGAAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTACATATCTCGAATTCAATTA
81196047 G
130 G
*
81196048 TATGATTAAGAACGTGAATTTGAAAGATTTGAGTTTAGATTTCAATTAC-CTATAAATC-TCGAG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACTCTATAAATCGT-GAG
* *
81196111 GAGAATGAAATTTCTACTTAAAATTAGTTGAGTTTCAGTATGATTACATATTTCGAATTCAATTA
65 GAGAATGAAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTACATATCTCGAATTCAATTA
81196176 G
130 G
* * * * *
81196177 CATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTGAG
1 TATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAG
81196241 AAGAGTAAAA
Statistics
Matches: 174, Mismatches: 14, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
128 1 0.01
129 139 0.80
130 32 0.18
131 2 0.01
ACGTcount: A:0.36, C:0.10, G:0.17, T:0.37
Consensus pattern (130 bp):
TATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACTCTATAAATCGTGAGG
AGAATGAAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTACATATCTCGAATTCAATTAG
Found at i:81196335 original size:85 final size:85
Alignment explanation
Indices: 81196173--81196336 Score: 215
Period size: 85 Copynumber: 1.9 Consensus size: 85
81196163 TCGAATTCAA
**
81196173 TTAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGT
1 TTAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCAC
*
81196238 GAGAAGAGTAAAATCTATAG
66 GAGAAGAATAAAATCTATAG
* * * * *
81196258 TTAGTATGATTAAGAATATGAACTTGAAA-CATTTGAGTTTGGATTTC-AGTTACTCTATAAGTC
1 TTAGCATGATTAAGAACATGAACTTGAAAGC-TCTGAGTTTAGATTTCAAG-TACTCTATAAATC
*
81196321 ACGAGGAGAATAAAAT
64 ACGAGAAGAATAAAAT
81196337 GTTTACTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
84 3 0.04
85 65 0.96
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.32
Consensus pattern (85 bp):
TTAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCAC
GAGAAGAATAAAATCTATAG
Found at i:81196413 original size:214 final size:214
Alignment explanation
Indices: 81196044--81196465 Score: 591
Period size: 214 Copynumber: 2.0 Consensus size: 214
81196034 TCGAATTCAA
* * * *
81196044 TTAGTATGATTAAGAACGTGAATTTGAAAGATTTGAGTTTAGATTTCAATTACCTATAAATCTCG
1 TTAGTATGATTAAGAACATGAACTTGAAACATTTGAGTTTAGATTTCAATTACCTATAAATCACG
* *
81196109 AGGAGAATGAAATTTCTACTTAAAATTAGTTGAGTTTCAGTATGATTACATATTTCGAATTCAAT
66 AGGAGAATAAAATTTCTACTTAAAATTAGTTAAGTTTCAGTATGATTACATATTTCGAATTCAAT
*
81196174 TAGCATGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTG
131 TAGCATGATTAAGAACAGGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTG
81196239 AGAAGAGTAAAATCTATAG
196 AGAAGAGTAAAATCTATAG
* * * *
81196258 TTAGTATGATTAAGAATATGAACTTGAAACATTTGAGTTTGGATTTCAGTTACTCTATAAGTCAC
1 TTAGTATGATTAAGAACATGAACTTGAAACATTTGAGTTTAGATTTCAATTAC-CTATAAATCAC
* * *
81196323 GAGGAGAATAAAATGTT-TACTT-AAATTA-TTCAAGTTTCTGTTTGATTATATATTTCGAATT-
65 GAGGAGAATAAAAT-TTCTACTTAAAATTAGTT-AAGTTTCAGTATGATTACATATTTCGAATTC
* * * * *
81196384 TATATAGTATGATTAAGAACAGGAACTTGAAAGCTTTGAGTTTAGTTTTCAATTACTCTATAAAT
128 AAT-TAGCATGATTAAGAACAGGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAAT
**
81196449 CGTGAGGGGAGTAAAAT
192 CGTGAGAAGAGTAAAAT
81196466 GCATATTTAA
Statistics
Matches: 183, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
213 4 0.02
214 150 0.82
215 27 0.15
216 2 0.01
ACGTcount: A:0.36, C:0.09, G:0.18, T:0.37
Consensus pattern (214 bp):
TTAGTATGATTAAGAACATGAACTTGAAACATTTGAGTTTAGATTTCAATTACCTATAAATCACG
AGGAGAATAAAATTTCTACTTAAAATTAGTTAAGTTTCAGTATGATTACATATTTCGAATTCAAT
TAGCATGATTAAGAACAGGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTG
AGAAGAGTAAAATCTATAG
Found at i:81196498 original size:129 final size:129
Alignment explanation
Indices: 81196256--81196635 Score: 480
Period size: 129 Copynumber: 2.9 Consensus size: 129
81196246 TAAAATCTAT
* * * *
81196256 AGTTAGTATGATTAAGAATATGAACTTGAAACATTTGAGTTTGGATTTCAGTTACTCTATAAGTC
1 AGTTAGTATGATTAAGAACATGAACTTGAAACATTTGAGTTTAGATTTCAATTACTCTATAAATC
** * * *
81196321 ACGAGGAGAATAAAATGTTTACTTAAATTA-TTCAAGTTTCT-GTTTGATTATATATTTCGAATT
66 GTGAGGAGAATAAAATGTATACTTAAATTAGTT-GAGTTT-TAGTATGATTATATATTTCGAATT
*
81196384 T
129 C
* *
81196385 A-TATAGTATGATTAAGAACAGGAACTTGAAAGC-TTTGAGTTTAGTTTTCAATTACTCTATAAA
1 AGT-TAGTATGATTAAGAACATGAACTTGAAA-CATTTGAGTTTAGATTTCAATTACTCTATAAA
* * * * * *
81196448 TCGTGAGGGGAGTAAAATGCATATTTAAATTAGTTGAGTTTTAGCATGATTATATATTCCGAATT
64 TCGTGAGGAGAATAAAATGTATACTTAAATTAGTTGAGTTTTAGTATGATTATATATTTCGAATT
81196513 C
129 C
* * *
81196514 AGTTAGTACGATTAAGAACATGAATTTGAGACATTTGAGTTTAGATTTCAATTACTCTATAAATC
1 AGTTAGTATGATTAAGAACATGAACTTGAAACATTTGAGTTTAGATTTCAATTACTCTATAAATC
* * *
81196579 GTGAGGAGAAAAAAATGTATACTTAAATTAGTTGAGATTTAGTGTGATTATATATTT
66 GTGAGGAGAATAAAATGTATACTTAAATTAGTTGAGTTTTAGTATGATTATATATTT
81196636 AAGATATAAA
Statistics
Matches: 213, Mismatches: 32, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
128 3 0.01
129 206 0.97
130 4 0.02
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.39
Consensus pattern (129 bp):
AGTTAGTATGATTAAGAACATGAACTTGAAACATTTGAGTTTAGATTTCAATTACTCTATAAATC
GTGAGGAGAATAAAATGTATACTTAAATTAGTTGAGTTTTAGTATGATTATATATTTCGAATTC
Found at i:81196555 original size:343 final size:343
Alignment explanation
Indices: 81195919--81196583 Score: 848
Period size: 343 Copynumber: 1.9 Consensus size: 343
81195909 ATTCTAATGT
* * **
81195919 TATGTTTAAGAACGTGAACTTGAAAATTTGGATTTAGGTTTCAATTACTATATAAATCGTGAGGA
1 TATGATTAAGAACATGAACTTGAAAATTTGGATTTAGGTTTCAATTACTATATAAATCACGAGGA
** *
81195984 GAATGGAATTTATACTTAAAATTAGTTGAGTTTCAGTATGATTATATATCTCGAATTCAATTAGT
66 GAATAAAATTTATACTTAAAATTAGTTAAGTTTCAGTATGATTATATATCTCGAATTCAATTAGT
*
81196049 ATGATTAAGAACGTGAATTTGAAAGATTTGAGTTTAGATTTCAATTACCTATAAATCTCGAGGAG
131 ATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACCTATAAATCTCGAGGAG
* * * *
81196114 AATGAAATTTCTACTTAAAATTAGTTGAGTTTCAGTATGATTACATATTTCGAATTCAATTAGCA
196 AATGAAAATGCTACTTAAAATTAGTTGAGTTTCAGCATGATTACATATTCCGAATTCAATTAGCA
*
81196179 TGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTGAGAAG
261 CGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTGAGAAG
81196244 AGTAAAATCTATAGTTAG
326 AGTAAAATCTATAGTTAG
* * * *
81196262 TATGATTAAGAATATGAACTTGAAACATTT-GAGTTT-GGATTTCAGTTACTCTATAAGTCACGA
1 TATGATTAAGAACATGAACTTGAAA-ATTTGGA-TTTAGG-TTTCAATTACTATATAAATCACGA
* * * *
81196325 GGAGAATAAAATGTT-TACTT-AAATTA-TTCAAGTTTCTGTTTGATTATATATTTCGAATT-TA
63 GGAGAATAAAAT-TTATACTTAAAATTAGTT-AAGTTTCAGTATGATTATATATCTCGAATTCAA
* *
81196386 TATAGTATGATTAAGAACAG-GAACTTGAAAGCTTTGAGTTTAGTTTTCAATTACTCTATAAATC
126 T-TAGTATGATTAAGAAC-GTGAACTTGAAAGATTTGAGTTTAGATTTCAATTAC-CTATAAATC
* * * * *
81196450 GT-GAGGGGAGT-AAAATGCATA-TTTAAATTAGTTGAGTTTTAGCATGATTATATATTCCGAAT
188 -TCGAGGAGAATGAAAATGC-TACTTAAAATTAGTTGAGTTTCAGCATGATTACATATTCCGAAT
* * * * * *
81196512 TCAGTTAGTACGATTAAGAACATGAATTTGAGA-CATTTGAGTTTAGATTTCAATTACTCTATAA
251 TCAATTAGCACGATTAAGAACATGAACTTGAAAGC-TCTGAGTTTAGATTTCAAGTACTCTATAA
81196576 ATCGTGAG
315 ATCGTGAG
81196584 GAGAAAAAAA
Statistics
Matches: 277, Mismatches: 34, Indels: 22
0.83 0.10 0.07
Matches are distributed among these distances:
342 5 0.02
343 209 0.75
344 60 0.22
345 3 0.01
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.37
Consensus pattern (343 bp):
TATGATTAAGAACATGAACTTGAAAATTTGGATTTAGGTTTCAATTACTATATAAATCACGAGGA
GAATAAAATTTATACTTAAAATTAGTTAAGTTTCAGTATGATTATATATCTCGAATTCAATTAGT
ATGATTAAGAACGTGAACTTGAAAGATTTGAGTTTAGATTTCAATTACCTATAAATCTCGAGGAG
AATGAAAATGCTACTTAAAATTAGTTGAGTTTCAGCATGATTACATATTCCGAATTCAATTAGCA
CGATTAAGAACATGAACTTGAAAGCTCTGAGTTTAGATTTCAAGTACTCTATAAATCGTGAGAAG
AGTAAAATCTATAGTTAG
Found at i:81201776 original size:20 final size:20
Alignment explanation
Indices: 81201751--81201790 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
81201741 AAATAAATAT
81201751 TTATTTTTCTTATTTTCTAA
1 TTATTTTTCTTATTTTCTAA
81201771 TTATTTTTCTTATTTTCTAA
1 TTATTTTTCTTATTTTCTAA
81201791 CATAATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (20 bp):
TTATTTTTCTTATTTTCTAA
Found at i:81213736 original size:21 final size:21
Alignment explanation
Indices: 81213710--81213750 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
81213700 ATCTGCTCAA
* *
81213710 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
81213731 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
81213751 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:81238285 original size:31 final size:30
Alignment explanation
Indices: 81238230--81238309 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 30
81238220 ATCTCAAAAT
*
81238230 TATACATAAACTATGA-TTGAATGTACAATT-
1 TATACATAAACTTTGATTTGAATGT--AATTA
81238260 TGATACATAAACTTTGATTTG-ATGTAATTA
1 T-ATACATAAACTTTGATTTGAATGTAATTA
*
81238290 TACACATGAAACTTTGATTT
1 TATACAT-AAACTTTGATTT
81238310 ATTTTTATAT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
29 9 0.20
30 14 0.32
31 18 0.41
32 3 0.07
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (30 bp):
TATACATAAACTTTGATTTGAATGTAATTA
Found at i:81238730 original size:24 final size:24
Alignment explanation
Indices: 81238703--81238754 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
81238693 TTAGTAAGTC
*
81238703 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
81238727 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
81238751 AAAT
1 AAAT
81238755 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:81246525 original size:17 final size:17
Alignment explanation
Indices: 81246503--81246536 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81246493 TAGAAAGGAA
81246503 TGTCCAATTCTTAACGT
1 TGTCCAATTCTTAACGT
81246520 TGTCCAATTCTTAACGT
1 TGTCCAATTCTTAACGT
81246537 CGTTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (17 bp):
TGTCCAATTCTTAACGT
Found at i:81249779 original size:186 final size:178
Alignment explanation
Indices: 81249453--81249781 Score: 419
Period size: 186 Copynumber: 1.8 Consensus size: 178
81249443 TATAAGTTAC
* * *
81249453 ATTTGAGTTGTCACTTAACACTAAAAATTTAATGACTAAACTAATGAAAGGACATGATTGATACG
1 ATTTGAGTTGTCACTTAACACTAAAAAATTAATGACTAAACTAATGAAAGGACATAATTGATACC
* * * * * *
81249518 TTACTTGTTATACTCCAAGGTATTACTTTCATCGCAATGAAATAGCCTACGTTGTTATTGACATT
66 TTACTTGTTATACTCCAAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGTTATTGACATT
81249583 TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCGTGGACATG
131 TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCGTGGACATG
* * *
81249631 ATTTGAGTTGTCACTTAACACTCAAAAAATT-ATGGCTAAGCTAATGAAATGACATAATTGATAC
1 ATTTGAGTTGTCACTTAACACT-AAAAAATTAATGACTAAACTAATGAAAGGACATAATTGATAC
**
81249695 AATACTTACGATCCTTGTTATAC-CTTAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGT
65 ----CTT---A--CTTGTTATACTCCAAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGT
*
81249759 TGTTGACATTTAGTAGGCAACGC
121 TATTGACATTTAGTAGGCAACGC
81249782 CACAATGCAA
Statistics
Matches: 126, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
178 51 0.40
179 7 0.06
182 2 0.02
185 1 0.01
186 55 0.44
187 10 0.08
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (178 bp):
ATTTGAGTTGTCACTTAACACTAAAAAATTAATGACTAAACTAATGAAAGGACATAATTGATACC
TTACTTGTTATACTCCAAGGCATTACTTGCACCACAAAGAAAGAGCCTACGTTGTTATTGACATT
TAGTAGGCAACGCAATGATACCATTGTCGCAAATCTACCGTGGACATG
Found at i:81254248 original size:29 final size:29
Alignment explanation
Indices: 81254215--81254284 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
81254205 CACATTTAAA
* *
81254215 AAATAAATA-CATCAATTTATTTTTATATT
1 AAATAAATATAAT-AATTTATTTTTATAAT
*
81254244 AAATAAATATAATTATTTATTTTTATAAT
1 AAATAAATATAATAATTTATTTTTATAAT
*
81254273 ATATAAATATAA
1 AAATAAATATAA
81254285 AATGATGTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 34 0.94
30 2 0.06
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
AAATAAATATAATAATTTATTTTTATAAT
Found at i:81258286 original size:16 final size:15
Alignment explanation
Indices: 81258242--81258324 Score: 53
Period size: 16 Copynumber: 5.3 Consensus size: 15
81258232 AATTGGGTTT
* *
81258242 ATTTAAAATTTAGGTT
1 ATTT-AAATTTAGATC
81258258 ATTTAAA-TTAGATC
1 ATTTAAATTTAGATC
*
81258272 ATTATAAATTTAGATT
1 ATT-TAAATTTAGATC
*
81258288 ATTTCATATTTAGAT-
1 ATTT-AAATTTAGATC
*
81258303 AGTTTAATATTTCGAGTC
1 A-TTTAA-ATTTAGA-TC
81258321 ATTT
1 ATTT
81258325 TCAAATTAAG
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
14 8 0.15
15 10 0.19
16 31 0.57
17 4 0.07
18 1 0.02
ACGTcount: A:0.36, C:0.05, G:0.10, T:0.49
Consensus pattern (15 bp):
ATTTAAATTTAGATC
Found at i:81261076 original size:23 final size:22
Alignment explanation
Indices: 81261031--81261074 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
81261021 CAATGCCAGT
81261031 TTTTAACAATAAAAATGATAAA
1 TTTTAACAATAAAAATGATAAA
*
81261053 TTTTAACAGTAAAAGA-GATAAA
1 TTTTAACAATAAAA-ATGATAAA
81261075 ATGCAATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (22 bp):
TTTTAACAATAAAAATGATAAA
Found at i:81265980 original size:18 final size:18
Alignment explanation
Indices: 81265953--81266045 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
81265943 TACGACCGTT
81265953 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
*
81265971 TACGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
81265989 TACAGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
81266007 TATGGCACTATTCACGTA
1 TACGGTACTATTCACGTA
*
81266025 TACGGTACTGTTCACGTA
1 TACGGTACTATTCACGTA
81266043 TAC
1 TAC
81266046 AGTAGTTGGG
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 66 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:81277429 original size:30 final size:30
Alignment explanation
Indices: 81277393--81277452 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
81277383 CAACACCTGT
*
81277393 TTGTATCTAGACTGACATTATTATAGGTAA
1 TTGTATCTAGAATGACATTATTATAGGTAA
*
81277423 TTGTATCTAGAATGATATTATTATAGGTAA
1 TTGTATCTAGAATGACATTATTATAGGTAA
81277453 AAGTACCATG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.35, C:0.07, G:0.17, T:0.42
Consensus pattern (30 bp):
TTGTATCTAGAATGACATTATTATAGGTAA
Found at i:81284164 original size:17 final size:18
Alignment explanation
Indices: 81284139--81284178 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
81284129 ACAATATCGA
*
81284139 TAAAA-TTAAAAT-ATTT
1 TAAAATTTAAAATCAATT
81284155 TAAAATTTAAAATCAATT
1 TAAAATTTAAAATCAATT
81284173 TAAAAT
1 TAAAAT
81284179 ATAATTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 5 0.24
17 7 0.33
18 9 0.43
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAAATTTAAAATCAATT
Found at i:81287439 original size:51 final size:51
Alignment explanation
Indices: 81287363--81287476 Score: 192
Period size: 51 Copynumber: 2.2 Consensus size: 51
81287353 AGTGACAAGC
* *
81287363 GACAAGCGACAAGCGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGCGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
* *
81287414 GACAAGTGATAAGTGATAAGTGGTAGTTTTAGCTACACTTATCTGATCAGT
1 GACAAGTGATAAGCGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
81287465 GACAAGTGATAA
1 GACAAGTGATAA
81287477 ATGTGATCAG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (51 bp):
GACAAGTGATAAGCGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGT
Found at i:81291819 original size:110 final size:111
Alignment explanation
Indices: 81291623--81291838 Score: 303
Period size: 110 Copynumber: 2.0 Consensus size: 111
81291613 GGACTTCCTA
* * *
81291623 AAATGGTAAGTTTTCTATTTAATCCTTTAAATTTTTATGAAATTACATGTTAGTATAATGATAAG
1 AAATGGTAAGTTTTCCATTTAATCCTTTAAAATTTTATAAAATTACATGTTAGTATAATGATAAG
* **
81291688 ATTTCACTTTTGCCCTCCCAATAATTAATGATTCATCTTTGCTCTC
66 ATTTCACCTTAACCCTCCCAATAATTAATGATTCATCTTTGCTCTC
* *
81291734 AAATGGT-AGATTTTCCATTTAGTGC-TTAAAATTTTATAAAATTACATGTTAGTATAATGATAA
1 AAATGGTAAG-TTTTCCATTTAATCCTTTAAAATTTTATAAAATTACATGTTAGTATAATGATAA
* *
81291797 -ATTTTCACCTTAACCCTTCCAATAATTTATGATTCATCTTTG
65 GA-TTTCACCTTAACCCTCCCAATAATTAATGATTCATCTTTG
81291839 GTCCCCTTAA
Statistics
Matches: 93, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
109 1 0.01
110 73 0.78
111 19 0.20
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (111 bp):
AAATGGTAAGTTTTCCATTTAATCCTTTAAAATTTTATAAAATTACATGTTAGTATAATGATAAG
ATTTCACCTTAACCCTCCCAATAATTAATGATTCATCTTTGCTCTC
Found at i:81299757 original size:18 final size:18
Alignment explanation
Indices: 81299730--81299772 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
81299720 TTGAACCAGG
*
81299730 TTTTTT-ATTTTTAATAT
1 TTTTTTAATTTTTAATAA
81299747 TTTTTTAATTTTTAATAA
1 TTTTTTAATTTTTAATAA
81299765 TTTTTTAA
1 TTTTTTAA
81299773 GCGAACAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 6 0.25
18 18 0.75
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTTAATTTTTAATAA
Found at i:81303155 original size:13 final size:13
Alignment explanation
Indices: 81303137--81303161 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81303127 CCTTTGCCTT
81303137 TTTTTCTTTTTAC
1 TTTTTCTTTTTAC
81303150 TTTTTCTTTTTA
1 TTTTTCTTTTTA
81303162 TTATACAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTTCTTTTTAC
Found at i:81312079 original size:2 final size:2
Alignment explanation
Indices: 81312074--81312107 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
81312064 TTTTTTTTTT
*
81312074 TG TG TG TG TG TG TG TG TG TG TG TG TG CG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
81312108 GGTTCGTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.03, G:0.50, T:0.47
Consensus pattern (2 bp):
TG
Found at i:81314060 original size:13 final size:14
Alignment explanation
Indices: 81314042--81314070 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81314032 AAAATTTATT
81314042 AAAATTA-TTAAAA
1 AAAATTATTTAAAA
81314055 AAAATTATTTAAAA
1 AAAATTATTTAAAA
81314069 AA
1 AA
81314071 TGCTCTCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAATTATTTAAAA
Found at i:81328625 original size:29 final size:29
Alignment explanation
Indices: 81328592--81328657 Score: 114
Period size: 29 Copynumber: 2.3 Consensus size: 29
81328582 AATTGAATAT
81328592 TTGAGTGACCATTTTATAACTTTTCATAA
1 TTGAGTGACCATTTTATAACTTTTCATAA
*
81328621 TTGAGTGACCATTTTATAGCTTTTCATAA
1 TTGAGTGACCATTTTATAACTTTTCATAA
*
81328650 TTAAGTGA
1 TTGAGTGA
81328658 TAAAAAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 35 1.00
ACGTcount: A:0.30, C:0.12, G:0.14, T:0.44
Consensus pattern (29 bp):
TTGAGTGACCATTTTATAACTTTTCATAA
Found at i:81333031 original size:35 final size:35
Alignment explanation
Indices: 81332970--81333051 Score: 87
Period size: 34 Copynumber: 2.4 Consensus size: 35
81332960 TAAAATAAAC
* *
81332970 ATTAAAAAAATGT-TAATATAACTAAATATAAAAT
1 ATTAAAAAAATATATAAAATAACTAAATATAAAAT
* * *
81333004 ATTAAAAAAATATATAAAATCATTAAATATTAAAT
1 ATTAAAAAAATATATAAAATAACTAAATATAAAAT
* *
81333039 -TTAAGATAATATA
1 ATTAAAAAAATATA
81333052 AATATAAATT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
34 23 0.57
35 17 0.43
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (35 bp):
ATTAAAAAAATATATAAAATAACTAAATATAAAAT
Found at i:81338889 original size:33 final size:32
Alignment explanation
Indices: 81338852--81338965 Score: 94
Period size: 33 Copynumber: 3.7 Consensus size: 32
81338842 CTCGACCTCC
* *
81338852 AGGAGGTGGTGGTGGAGGTGGTGCGCCAGCCAT
1 AGGAGGTGGTGGTGGAGGTGGGGCACCAG-CAT
* *
81338885 AGGAGGTGGT-G-GG-GGTGGGGCTCCA-AAT
1 AGGAGGTGGTGGTGGAGGTGGGGCACCAGCAT
* * * *
81338913 -GGGGGAGGAGGTGGAGGTGGGGCACTAGACAT
1 AGGAGGTGGTGGTGGAGGTGGGGCACCAG-CAT
*
81338945 TGGAGGTGGTGGTGGAGGTGG
1 AGGAGGTGGTGGTGGAGGTGG
81338966 TGGTGAAGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
27 6 0.10
28 3 0.05
29 2 0.03
30 20 0.32
31 2 0.03
32 3 0.05
33 27 0.43
ACGTcount: A:0.17, C:0.10, G:0.56, T:0.18
Consensus pattern (32 bp):
AGGAGGTGGTGGTGGAGGTGGGGCACCAGCAT
Found at i:81338962 original size:12 final size:12
Alignment explanation
Indices: 81338945--81338970 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
81338935 CACTAGACAT
81338945 TGGAGGTGGTGG
1 TGGAGGTGGTGG
81338957 TGGAGGTGGTGG
1 TGGAGGTGGTGG
81338969 TG
1 TG
81338971 AAGTAGAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.65, T:0.27
Consensus pattern (12 bp):
TGGAGGTGGTGG
Found at i:81344425 original size:28 final size:27
Alignment explanation
Indices: 81344373--81344427 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
81344363 TTCAATCTTC
* *
81344373 TTAAGAAAAAATTTAAAATTAAAATAA
1 TTAAGAAAAAATATAAAATCAAAATAA
81344400 TTAAGAAAAAATAATAAAA-CACAAATAA
1 TTAAGAAAAAAT-ATAAAATCA-AAATAA
81344428 ATAAATAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.24
Consensus pattern (27 bp):
TTAAGAAAAAATATAAAATCAAAATAA
Found at i:81345077 original size:16 final size:16
Alignment explanation
Indices: 81345056--81345088 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
81345046 CAACAAAGTA
81345056 ACACTAAATAAGCCTT
1 ACACTAAATAAGCCTT
81345072 ACACTAAATAAGCCTT
1 ACACTAAATAAGCCTT
81345088 A
1 A
81345089 ATCATGATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (16 bp):
ACACTAAATAAGCCTT
Found at i:81351727 original size:6 final size:6
Alignment explanation
Indices: 81351716--81351760 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
81351706 CAAAAATGCA
81351716 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TAT
81351761 TTTATTTAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:81354186 original size:26 final size:26
Alignment explanation
Indices: 81354135--81354186 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
81354125 TTAAAATAAT
* * *
81354135 AAAATTTAATTTAAAAATTCTTTATA
1 AAAATTTAATTTAAAAAATATATATA
*
81354161 AAAATTTATTTTAAAAAATATATATA
1 AAAATTTAATTTAAAAAATATATATA
81354187 TTATGCTTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (26 bp):
AAAATTTAATTTAAAAAATATATATA
Found at i:81356077 original size:6 final size:6
Alignment explanation
Indices: 81356066--81356101 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
81356056 AATATTGATA
81356066 ATTTAT ATTTAT ATTTAT ATTTTATT ATTTAT ATTT
1 ATTTAT ATTTAT ATTTAT A-TTTA-T ATTTAT ATTT
81356102 GTTTTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 18 0.64
7 8 0.29
8 2 0.07
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (6 bp):
ATTTAT
Found at i:81356096 original size:14 final size:13
Alignment explanation
Indices: 81356066--81356101 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
81356056 AATATTGATA
81356066 ATTTATA-TTTAT
1 ATTTATATTTTAT
81356078 ATTTATATTTTATT
1 ATTTATATTTTA-T
81356092 ATTTATATTT
1 ATTTATATTT
81356102 GTTTTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 7 0.32
13 4 0.18
14 11 0.50
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (13 bp):
ATTTATATTTTAT
Found at i:81356099 original size:26 final size:25
Alignment explanation
Indices: 81356066--81356114 Score: 71
Period size: 26 Copynumber: 1.9 Consensus size: 25
81356056 AATATTGATA
81356066 ATTTATATTTATATTTATATTTTATT
1 ATTTATATTTAT-TTTATATTTTATT
* *
81356092 ATTTATATTTGTTTTATTTTTTA
1 ATTTATATTTATTTTATATTTTA
81356115 ATAGCGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (25 bp):
ATTTATATTTATTTTATATTTTATT
Found at i:81357056 original size:23 final size:23
Alignment explanation
Indices: 81357013--81357057 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
81357003 CCAATTATTA
*
81357013 ATGCCATTTCAACATCTTTTTTC
1 ATGCCATTTCAACATCGTTTTTC
*
81357036 ATGCCATTTGACACAT-GTTTTT
1 ATGCCATTTCA-ACATCGTTTTT
81357058 GATAATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.22, C:0.22, G:0.09, T:0.47
Consensus pattern (23 bp):
ATGCCATTTCAACATCGTTTTTC
Found at i:81377470 original size:2 final size:2
Alignment explanation
Indices: 81377463--81377511 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
81377453 AGACCCCAAA
81377463 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
81377505 AC AC AC A
1 AC AC AC A
81377512 TGGGATTTGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:81378110 original size:6 final size:7
Alignment explanation
Indices: 81378092--81378130 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
81378082 TTAAGCATAT
81378092 ATTTTTA
1 ATTTTTA
81378099 ATTTTTA
1 ATTTTTA
81378106 ATTTTTA
1 ATTTTTA
81378113 ATATTTATA
1 AT-TTT-TA
*
81378122 ATTATTA
1 ATTTTTA
81378129 AT
1 AT
81378131 ATATGTTTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
7 20 0.69
8 5 0.17
9 4 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (7 bp):
ATTTTTA
Found at i:81378123 original size:16 final size:15
Alignment explanation
Indices: 81378092--81378132 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
81378082 TTAAGCATAT
81378092 ATTTTTAAT-TTTTA
1 ATTTTTAATATTTTA
81378106 ATTTTTAATATTTATA
1 ATTTTTAATATTT-TA
*
81378122 ATTATTAATAT
1 ATTTTTAATAT
81378133 ATGTTTTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
14 9 0.38
15 3 0.12
16 12 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATTTTTAATATTTTA
Found at i:81386032 original size:23 final size:23
Alignment explanation
Indices: 81386006--81386087 Score: 78
Period size: 23 Copynumber: 3.6 Consensus size: 23
81385996 GAGAAAAATC
*
81386006 ATTTTATCTTTTTAATTTCTTTT
1 ATTTTATCTTTTTAATTTCATTT
**** *
81386029 ATTTTATCTTTTTAAGAAAAATT
1 ATTTTATCTTTTTAATTTCATTT
*
81386052 ATTTTAT-TTTTTAATTTCCTTT
1 ATTTTATCTTTTTAATTTCATTT
81386074 ATTTT-TCTCTTTTA
1 ATTTTATCT-TTTTA
81386088 GAATGAGTTT
Statistics
Matches: 45, Mismatches: 12, Indels: 4
0.74 0.20 0.07
Matches are distributed among these distances:
21 1 0.02
22 15 0.33
23 29 0.64
ACGTcount: A:0.23, C:0.09, G:0.01, T:0.67
Consensus pattern (23 bp):
ATTTTATCTTTTTAATTTCATTT
Found at i:81386075 original size:45 final size:46
Alignment explanation
Indices: 81385997--81386087 Score: 141
Period size: 45 Copynumber: 2.0 Consensus size: 46
81385987 GATTTTGCAG
*
81385997 AGAAAAATCATTTTATCTTTTTAATTTCTTTTATTTTATCT-TTTTA
1 AGAAAAATCATTTTATCTTTTTAATTTCCTTTATTTT-TCTCTTTTA
*
81386043 AGAAAAATTATTTTAT-TTTTTAATTTCCTTTATTTTTCTCTTTTA
1 AGAAAAATCATTTTATCTTTTTAATTTCCTTTATTTTTCTCTTTTA
81386088 GAATGAGTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
44 3 0.07
45 24 0.57
46 15 0.36
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (46 bp):
AGAAAAATCATTTTATCTTTTTAATTTCCTTTATTTTTCTCTTTTA
Found at i:81388667 original size:6 final size:6
Alignment explanation
Indices: 81388656--81388707 Score: 50
Period size: 6 Copynumber: 8.0 Consensus size: 6
81388646 GGGTGACACA
* *
81388656 GTATAT GTATAT GTATAT GTATAT ACGTATACAT ATATAT ATATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT --GTAT--AT GTATAT GTATAT GTATAT
81388708 TTGTGTATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 31 0.77
8 7 0.17
10 2 0.05
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (6 bp):
GTATAT
Found at i:81399650 original size:18 final size:18
Alignment explanation
Indices: 81399624--81399660 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
81399614 ATTTTTCCCT
* *
81399624 TGCCTAGTAAAACAGAAA
1 TGCCCAGTAAAACACAAA
81399642 TGCCCAGTAAAACACAAA
1 TGCCCAGTAAAACACAAA
81399660 T
1 T
81399661 TACTGATTAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.22, G:0.14, T:0.16
Consensus pattern (18 bp):
TGCCCAGTAAAACACAAA
Found at i:81406967 original size:30 final size:30
Alignment explanation
Indices: 81406909--81406990 Score: 85
Period size: 30 Copynumber: 2.7 Consensus size: 30
81406899 TCTAAAATTT
* * *
81406909 TTTTGAAATTTTTATTTAGAACCCTTCAAAAA
1 TTTTGAAAATTTTAATTA-AA-TCTTCAAAAA
* *
81406941 TTTT-AAAATTTCTCATTAAATCTTCAAAAG
1 TTTTGAAAATTT-TAATTAAATCTTCAAAAA
81406971 TTTTGAAAATTTTAATTAAA
1 TTTTGAAAATTTTAATTAAA
81406991 CCTCTTAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
30 19 0.45
31 15 0.36
32 8 0.19
ACGTcount: A:0.40, C:0.10, G:0.05, T:0.45
Consensus pattern (30 bp):
TTTTGAAAATTTTAATTAAATCTTCAAAAA
Found at i:81409690 original size:172 final size:172
Alignment explanation
Indices: 81409404--81409747 Score: 670
Period size: 172 Copynumber: 2.0 Consensus size: 172
81409394 ATTGGAACTA
81409404 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
1 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
81409469 ATGTTTCGTTTTGATGAGATTATGAACATCATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
66 ATGTTTCGTTTTGATGAGATTATGAACATCATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
*
81409534 TTTGAAGGTATACTTCTACGGGAATTTTTTGTTGCTTCGATG
131 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
81409576 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
1 GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
*
81409641 ATGTTTCGTTTTGATGGGATTATGAACATCATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
66 ATGTTTCGTTTTGATGAGATTATGAACATCATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
81409706 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
131 TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
81409748 CACTAGAGGT
Statistics
Matches: 170, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 170 1.00
ACGTcount: A:0.27, C:0.08, G:0.23, T:0.42
Consensus pattern (172 bp):
GGTTACTTCTAAGATTAAGGATGAATGTGGTTTTAGAAGGTTTTCCTAATTTATTAGGTTCAAGA
ATGTTTCGTTTTGATGAGATTATGAACATCATGAGATTTTAAATGTTGGTATATGGATCTTAAAG
TTTGAAGGTAGACTTCTACGGGAATTTTTTGTTGCTTCGATG
Found at i:81420373 original size:25 final size:25
Alignment explanation
Indices: 81420345--81420396 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
81420335 TTTTGCGACC
81420345 AAAATCTCGTTTGATTTAGTCTAAA
1 AAAATCTCGTTTGATTTAGTCTAAA
81420370 AAAATCTCGTTTGATTTAGTCTAAA
1 AAAATCTCGTTTGATTTAGTCTAAA
81420395 AA
1 AA
81420397 GTTTAAGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (25 bp):
AAAATCTCGTTTGATTTAGTCTAAA
Found at i:81421936 original size:18 final size:19
Alignment explanation
Indices: 81421905--81421940 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
81421895 TAATAAACAA
*
81421905 TTTTAAATTATAAAAATAT
1 TTTTAAAATATAAAAATAT
81421924 TTTTAAAAT-TAAAAATA
1 TTTTAAAATATAAAAATA
81421941 AAAAAAGTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TTTTAAAATATAAAAATAT
Found at i:81425322 original size:17 final size:15
Alignment explanation
Indices: 81425300--81425343 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
81425290 AGCATTCATA
81425300 AAAAATATATAATCTAG
1 AAAAATATA-AAT-TAG
*
81425317 AAAAATATAAATTAT
1 AAAAATATAAATTAG
81425332 AAAAATA-AAATT
1 AAAAATATAAATT
81425344 TTAAAAAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 5 0.19
15 9 0.35
16 3 0.12
17 9 0.35
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (15 bp):
AAAAATATAAATTAG
Found at i:81425342 original size:14 final size:15
Alignment explanation
Indices: 81425300--81425354 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 15
81425290 AGCATTCATA
*
81425300 AAAAATATATAATCTAG
1 AAAAATATA-AAT-TAT
81425317 AAAAATATAAATTAT
1 AAAAATATAAATTAT
*
81425332 AAAAATA-AAATTTT
1 AAAAATATAAATTAT
81425346 AAAAA-ATAA
1 AAAAATATAA
81425355 GATAATTGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 1 0.03
14 13 0.37
15 9 0.26
16 3 0.09
17 9 0.26
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (15 bp):
AAAAATATAAATTAT
Found at i:81425841 original size:27 final size:29
Alignment explanation
Indices: 81425772--81425841 Score: 67
Period size: 27 Copynumber: 2.5 Consensus size: 29
81425762 TAATGTTTTA
* *
81425772 TAATA-TTTAAATATTTAATATTATAATT
1 TAATATTTTTAATTTTTAATATTATAATT
* *
81425800 T-TTATTTGTTTATTTTTAAT-TTA-AATT
1 TAATATTT-TTAATTTTTAATATTATAATT
81425827 TAATATTTTTAATTT
1 TAATATTTTTAATTT
81425842 AAAAAAATCT
Statistics
Matches: 33, Mismatches: 6, Indels: 7
0.72 0.13 0.15
Matches are distributed among these distances:
27 13 0.39
28 11 0.33
29 9 0.27
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.63
Consensus pattern (29 bp):
TAATATTTTTAATTTTTAATATTATAATT
Found at i:81427954 original size:18 final size:19
Alignment explanation
Indices: 81427922--81427960 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
81427912 TGGTTTAATG
81427922 ATAATTAAATAAATAACAA
1 ATAATTAAATAAATAACAA
* *
81427941 ATAA-TAAATTAATAATAA
1 ATAATTAAATAAATAACAA
81427959 AT
1 AT
81427961 TAAATAACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (19 bp):
ATAATTAAATAAATAACAA
Found at i:81431698 original size:86 final size:86
Alignment explanation
Indices: 81431605--81431778 Score: 348
Period size: 86 Copynumber: 2.0 Consensus size: 86
81431595 TTTAAATAAA
81431605 ATTATTATTGATATTAAGTTATTTATAAGTCTTCAACTATTTTTTACTAATAATGAGTTGTCGTA
1 ATTATTATTGATATTAAGTTATTTATAAGTCTTCAACTATTTTTTACTAATAATGAGTTGTCGTA
81431670 TTTTTTGTTTGTTATCGGTGT
66 TTTTTTGTTTGTTATCGGTGT
81431691 ATTATTATTGATATTAAGTTATTTATAAGTCTTCAACTATTTTTTACTAATAATGAGTTGTCGTA
1 ATTATTATTGATATTAAGTTATTTATAAGTCTTCAACTATTTTTTACTAATAATGAGTTGTCGTA
81431756 TTTTTTGTTTGTTATCGGTGT
66 TTTTTTGTTTGTTATCGGTGT
81431777 AT
1 AT
81431779 CAAATATTCA
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 88 1.00
ACGTcount: A:0.26, C:0.07, G:0.14, T:0.53
Consensus pattern (86 bp):
ATTATTATTGATATTAAGTTATTTATAAGTCTTCAACTATTTTTTACTAATAATGAGTTGTCGTA
TTTTTTGTTTGTTATCGGTGT
Found at i:81431812 original size:86 final size:86
Alignment explanation
Indices: 81431623--81431802 Score: 247
Period size: 86 Copynumber: 2.1 Consensus size: 86
81431613 TGATATTAAG
* *
81431623 TTATTTATAAGTCTTCAACTATTTTTTACTAATAATGAGTTGTCGTATTTTTTGTTTGTTATCGG
1 TTATATATAAGTATTCAACTATTTTTTACTAATAATGAGTTGTCGTATTTTTTGTTTGTTATCGG
* * * * *
81431688 TGTATTATTATTGATATTAAG
66 TGTATAAATATTCATATGAAA
* *
81431709 TTATTTATAAGTCTTCAACTATTTTTTACTAATAATGAGTTGTCGTATTTTTTGTTTGTTATCGG
1 TTATATATAAGTATTCAACTATTTTTTACTAATAATGAGTTGTCGTATTTTTTGTTTGTTATCGG
81431774 TGTATCAAATATTCACT-TGAAA
66 TGTAT-AAATATTCA-TATGAAA
81431796 TT-TATAT
1 TTATATAT
81431803 CGAGATTCAA
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
86 74 0.86
87 11 0.13
88 1 0.01
ACGTcount: A:0.27, C:0.08, G:0.13, T:0.52
Consensus pattern (86 bp):
TTATATATAAGTATTCAACTATTTTTTACTAATAATGAGTTGTCGTATTTTTTGTTTGTTATCGG
TGTATAAATATTCATATGAAA
Found at i:81433072 original size:18 final size:17
Alignment explanation
Indices: 81433049--81433088 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
81433039 ATTAAGAAAC
*
81433049 AAATATTATCACTCGAGA
1 AAATA-TATCACACGAGA
*
81433067 AAATATATGACACGAGA
1 AAATATATCACACGAGA
81433084 AAATA
1 AAATA
81433089 CACAAGCACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (17 bp):
AAATATATCACACGAGA
Found at i:81439343 original size:27 final size:27
Alignment explanation
Indices: 81439313--81439367 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
81439303 TCTTTCAAGA
81439313 AATCTTTGACAAGTGTTGAATATAAGC
1 AATCTTTGACAAGTGTTGAATATAAGC
81439340 AATCTTTGACAAGTGTTGAATATAAGC
1 AATCTTTGACAAGTGTTGAATATAAGC
81439367 A
1 A
81439368 TGTACGGGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (27 bp):
AATCTTTGACAAGTGTTGAATATAAGC
Found at i:81443401 original size:18 final size:20
Alignment explanation
Indices: 81443364--81443402 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
81443354 TTGTTATTTT
*
81443364 TACATTGTTATTATTATATA
1 TACATTGTTATTAGTATATA
81443384 TACA-TGTT-TTAGTATATA
1 TACATTGTTATTAGTATATA
81443402 T
1 T
81443403 GTATATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 10 0.56
19 4 0.22
20 4 0.22
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (20 bp):
TACATTGTTATTAGTATATA
Found at i:81443659 original size:20 final size:20
Alignment explanation
Indices: 81443636--81443673 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
81443626 TGTTATATAC
*
81443636 GTATATATTATGTGTATTTT
1 GTATATATTATGTATATTTT
81443656 GTATATATTATGTATATT
1 GTATATATTATGTATATT
81443674 ATTATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.13, T:0.58
Consensus pattern (20 bp):
GTATATATTATGTATATTTT
Found at i:81443756 original size:21 final size:21
Alignment explanation
Indices: 81443727--81443766 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
81443717 ATTCATGTAT
*
81443727 TTTATTATATATGTATATATC
1 TTTAATATATATGTATATATC
*
81443748 TTTAATATATATTTATATA
1 TTTAATATATATGTATATA
81443767 AGTATATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATATATATGTATATATC
Found at i:81443866 original size:24 final size:25
Alignment explanation
Indices: 81443839--81443889 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
81443829 ATGTGTGTAC
*
81443839 ATATTATGTAAATGTTTTA-ATATT
1 ATATTATATAAATGTTTTATATATT
**
81443863 ATATTATATGTATGTTTTATATATT
1 ATATTATATAAATGTTTTATATATT
81443888 AT
1 AT
81443890 GAACATGTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (25 bp):
ATATTATATAAATGTTTTATATATT
Found at i:81444992 original size:8 final size:8
Alignment explanation
Indices: 81444975--81445003 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
81444965 AAAAATCAAA
81444975 TTTC-AGT
1 TTTCAAGT
81444982 TTTCAAGT
1 TTTCAAGT
81444990 TTTCAAGT
1 TTTCAAGT
81444998 TTTCAA
1 TTTCAA
81445004 TAGATCGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 4 0.19
8 17 0.81
ACGTcount: A:0.24, C:0.14, G:0.10, T:0.52
Consensus pattern (8 bp):
TTTCAAGT
Found at i:81447528 original size:2 final size:2
Alignment explanation
Indices: 81447521--81447563 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
81447511 ACTATAAACC
81447521 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
81447563 C
1 C
81447564 AGTTACAATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:81449928 original size:93 final size:93
Alignment explanation
Indices: 81449769--81449955 Score: 365
Period size: 93 Copynumber: 2.0 Consensus size: 93
81449759 TTAGAGTGGG
*
81449769 ATTGGATTGGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCATTACCCCAAGCAAGAAC
1 ATTGGATTGGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCACTACCCCAAGCAAGAAC
81449834 AAGGCCCATTGTGTGCCAAAGCCAAGGA
66 AAGGCCCATTGTGTGCCAAAGCCAAGGA
81449862 ATTGGATTGGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCACTACCCCAAGCAAGAAC
1 ATTGGATTGGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCACTACCCCAAGCAAGAAC
81449927 AAGGCCCATTGTGTGCCAAAGCCAAGGA
66 AAGGCCCATTGTGTGCCAAAGCCAAGGA
81449955 A
1 A
81449956 GAAAGGCATT
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.34, C:0.25, G:0.26, T:0.16
Consensus pattern (93 bp):
ATTGGATTGGAAGTCCAGTGAGAATGCCACTGCCGACATCAGAAGGCACTACCCCAAGCAAGAAC
AAGGCCCATTGTGTGCCAAAGCCAAGGA
Found at i:81460010 original size:14 final size:14
Alignment explanation
Indices: 81459993--81460019 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81459983 GTAAGTCCCT
81459993 ATAAAGAGTATACA
1 ATAAAGAGTATACA
81460007 ATAAAGAGTATAC
1 ATAAAGAGTATAC
81460020 CAATTACTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.07, G:0.15, T:0.22
Consensus pattern (14 bp):
ATAAAGAGTATACA
Found at i:81470783 original size:18 final size:18
Alignment explanation
Indices: 81470762--81470806 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
81470752 AAAGTCAAAT
**
81470762 AATATATAAAAATTGAAA
1 AATATATAAAAATAAAAA
81470780 AATATTATAAAAATAAAAA
1 AATA-TATAAAAATAAAAA
81470799 AATATATA
1 AATATATA
81470807 TTTAAATTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (18 bp):
AATATATAAAAATAAAAA
Found at i:81471028 original size:19 final size:21
Alignment explanation
Indices: 81470995--81471043 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
81470985 TTTTACAATC
*
81470995 TATATGTTTTCTTCT-AGTTTT
1 TATAT-TTTTCTTCTGAATTTT
81471016 TATATTTTT-TTCTGAATTTT
1 TATATTTTTCTTCTGAATTTT
81471036 TAT-TTTTT
1 TATATTTTT
81471044 ATTTTTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 9 0.35
20 12 0.46
21 5 0.19
ACGTcount: A:0.16, C:0.06, G:0.06, T:0.71
Consensus pattern (21 bp):
TATATTTTTCTTCTGAATTTT
Found at i:81472447 original size:31 final size:31
Alignment explanation
Indices: 81472406--81472466 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
81472396 TTAGCAACCC
81472406 TGTGACTTAAATAAAAACTTTTAAATAATTT
1 TGTGACTTAAATAAAAACTTTTAAATAATTT
*
81472437 TGTGATTTAAATAAAAACTTTTAAATAATT
1 TGTGACTTAAATAAAAACTTTTAAATAATT
81472467 CAATAATCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.43
Consensus pattern (31 bp):
TGTGACTTAAATAAAAACTTTTAAATAATTT
Found at i:81478596 original size:17 final size:18
Alignment explanation
Indices: 81478565--81478602 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
81478555 ACTTTCTAAA
81478565 AATTTAAAATAAAAT-CT
1 AATTTAAAATAAAATACT
81478582 AATTTAAAA-ATAAATACT
1 AATTTAAAATA-AAATACT
81478600 AAT
1 AAT
81478603 ACTACAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 1 0.05
17 13 0.68
18 5 0.26
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (18 bp):
AATTTAAAATAAAATACT
Found at i:81507427 original size:87 final size:87
Alignment explanation
Indices: 81507327--81507596 Score: 423
Period size: 87 Copynumber: 3.0 Consensus size: 87
81507317 TCTTACGAAA
81507327 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGGTTGGTAAGCTATAGGGATTT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGGTTGGTAAGCTATAGGGATTT
81507392 CACTTCTTTTTGTTATATATGT
66 CACTTCTTTTTGTTATATATGT
*
81507414 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGATTGGTAAGCTATAGGGATTT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGGTTGGTAAGCTATAGGGATTT
81507479 CACTTCTTTTTGTTATATATATATATGT
66 CACTTCTTTTTG-----T-TATATATGT
* * *
81507507 ATGTATTAAACATATTGATTATATTGAAATCATTTACAAATATAGTTGGTAAGTTATAGGGATTT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGGTTGGTAAGCTATAGGGATTT
* *
81507572 CACTTCTTTTTTTTTATTTATGT
66 CACTTC-TTTTTGTTATATATGT
81507595 AT
1 AT
81507597 ATATGTATTT
Statistics
Matches: 169, Mismatches: 7, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
87 76 0.45
88 10 0.06
89 1 0.01
92 1 0.01
93 76 0.45
94 5 0.03
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (87 bp):
ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGGTTGGTAAGCTATAGGGATTT
CACTTCTTTTTGTTATATATGT
Found at i:81507548 original size:93 final size:91
Alignment explanation
Indices: 81507327--81507615 Score: 444
Period size: 93 Copynumber: 3.2 Consensus size: 91
81507317 TCTTACGAAA
*
81507327 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGGTTGGTAAGCTATAGGGATTT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGATTGGTAAGCTATAGGGATTT
81507392 CACTTCTTTTTG----TTATATATGT
66 CACTTCTTTTTGTTTATTATATATGT
81507414 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGATTGGTAAGCTATAGGGATTT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGATTGGTAAGCTATAGGGATTT
81507479 CACTTCTTTTTGTTATATATATATATGT
66 CACTTCTTTTTGTT-TAT-TATATATGT
* *
81507507 ATGTATTAAACATATTGATTATATTGAAATCATTTACAAATAT-AGTTGGTAAGTTATAGGGATT
1 ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGA-TTGGTAAGCTATAGGGATT
* * *
81507571 TCACTTCTTTTTTTTTATTTATGTATAT
65 TCACTTCTTTTTGTTTA-TTATATATGT
*
81507599 ATGTATTTAACATATTG
1 ATGTATTAAACATATTG
81507616 TTTTTTCATT
Statistics
Matches: 187, Mismatches: 7, Indels: 11
0.91 0.03 0.05
Matches are distributed among these distances:
87 76 0.41
92 27 0.14
93 84 0.45
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (91 bp):
ATGTATTAAACATATTGATTATATTGAAATCATTTATAAATATGATTGGTAAGCTATAGGGATTT
CACTTCTTTTTGTTTATTATATATGT
Found at i:81512336 original size:54 final size:54
Alignment explanation
Indices: 81512278--81512385 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
81512268 ATATGAGCAA
81512278 TGTGCTCATGAAAAAACTTGGGTGTAGTCCCTTAATAAGCGGATCTGCAATCAT
1 TGTGCTCATGAAAAAACTTGGGTGTAGTCCCTTAATAAGCGGATCTGCAATCAT
81512332 TGTGCTCATGAAAAAACTTGGGTGTAGTCCCTTAATAAGCGGATCTGCAATCAT
1 TGTGCTCATGAAAAAACTTGGGTGTAGTCCCTTAATAAGCGGATCTGCAATCAT
81512386 GGAGTTTTTC
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.30
Consensus pattern (54 bp):
TGTGCTCATGAAAAAACTTGGGTGTAGTCCCTTAATAAGCGGATCTGCAATCAT
Found at i:81516196 original size:110 final size:110
Alignment explanation
Indices: 81515972--81516299 Score: 442
Period size: 110 Copynumber: 3.0 Consensus size: 110
81515962 AATAGTTTCA
* * * * *
81515972 CTATGTATGCAGTATTGCTAAATCTAGTTTTAGATATCATTTTGGAATCATATGTGATTTTCTAA
1 CTATGTATGCAGTATGGTTAAATCTAGTTATAGATATCATTTTGGAATCATATATGATTTTGT-A
* *
81516037 TATAAACCTATGGAAAATGCTATGGTATTGGACTGCACTTAATCCT
65 TATAAACCTATGGAAAATGCTATGGTATTGGACTGCACTTAGTCAT
* * * * *
81516083 CTATGCATGCTGTATGGTTAAATATAGTTCTAGCTATCATTTTGGAATCATATATGATTTTGTAT
1 CTATGTATGCAGTATGGTTAAATCTAGTTATAGATATCATTTTGGAATCATATATGATTTTGTAT
* * *
81516148 ATAAACCTATAGTAAATGCTATGGTATTGGATTGCACTTAGTCAT
66 ATAAACCTATGGAAAATGCTATGGTATTGGACTGCACTTAGTCAT
* * *
81516193 CTATGTATGCAGTATGGTTAAATCTAGTTATAGATATCATCTTGGAATCAT-TGACGATTTTGTT
1 CTATGTATGCAGTATGGTTAAATCTAGTTATAGATATCATTTTGGAATCATAT-ATGATTTTGTA
* * *
81516257 TATAAACCTATGGGAAATGCTATGATATTGGACTGCTCTTAGT
65 TATAAACCTATGGAAAATGCTATGGTATTGGACTGCACTTAGT
81516300 GCTCGTTTAA
Statistics
Matches: 189, Mismatches: 27, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
109 1 0.01
110 134 0.71
111 54 0.29
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (110 bp):
CTATGTATGCAGTATGGTTAAATCTAGTTATAGATATCATTTTGGAATCATATATGATTTTGTAT
ATAAACCTATGGAAAATGCTATGGTATTGGACTGCACTTAGTCAT
Found at i:81518928 original size:25 final size:26
Alignment explanation
Indices: 81518891--81518947 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
81518881 TATTTTAAGT
* *
81518891 ATAAAATATTTAT-TTTTATATAAAA
1 ATAAAATATTTATATATTAAATAAAA
81518916 ATAAAAT-TATTATATATTAAATAAAA
1 ATAAAATAT-TTATATATTAAATAAAA
*
81518942 AAAAAA
1 ATAAAA
81518948 GGAGAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 1 0.04
25 11 0.41
26 15 0.56
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
ATAAAATATTTATATATTAAATAAAA
Found at i:81522890 original size:31 final size:31
Alignment explanation
Indices: 81522847--81522907 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
81522837 CTAGGCACCT
* *
81522847 AATTGAATATT-AAAGTAAAATTTAGATACTA
1 AATTAAATATTAAAACT-AAATTTAGATACTA
81522878 AATTAAATATTAAAACTAAATTTAGATACT
1 AATTAAATATTAAAACTAAATTTAGATACT
81522908 CAACTGTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (31 bp):
AATTAAATATTAAAACTAAATTTAGATACTA
Found at i:81527155 original size:30 final size:30
Alignment explanation
Indices: 81527059--81527145 Score: 138
Period size: 30 Copynumber: 2.9 Consensus size: 30
81527049 ATCGACCGCA
*
81527059 GGGAGAAACCAAGGAAAAGCACCGATACCC
1 GGGAAAAACCAAGGAAAAGCACCGATACCC
* *
81527089 GGGACAAGCCAAGGAAAAGCACCGATACCC
1 GGGAAAAACCAAGGAAAAGCACCGATACCC
*
81527119 GGGAAAAACCAAGGAAAAGCATCGATA
1 GGGAAAAACCAAGGAAAAGCACCGATA
81527146 GGCCTGAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.45, C:0.24, G:0.26, T:0.05
Consensus pattern (30 bp):
GGGAAAAACCAAGGAAAAGCACCGATACCC
Found at i:81528192 original size:5 final size:6
Alignment explanation
Indices: 81528177--81528217 Score: 55
Period size: 6 Copynumber: 6.3 Consensus size: 6
81528167 TTGAATTCTG
81528177 AAAAAT AAAAAT AAAAAT AAAAATTT AAGAAAT AAAAAT AA
1 AAAAAT AAAAAT AAAAAT AAAAA--T AA-AAAT AAAAAT AA
81528218 TAAAATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 23 0.72
7 3 0.09
8 3 0.09
9 3 0.09
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAAAT
Found at i:81528211 original size:21 final size:22
Alignment explanation
Indices: 81528177--81528226 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
81528167 TTGAATTCTG
*
81528177 AAAAATAA-AAATAAAAATAA-
1 AAAATTAAGAAATAAAAATAAT
*
81528197 AAATTTAAGAAATAAAAATAAT
1 AAAATTAAGAAATAAAAATAAT
81528219 AAAATTAA
1 AAAATTAA
81528227 ATTTCAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 6 0.24
21 12 0.48
22 7 0.28
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (22 bp):
AAAATTAAGAAATAAAAATAAT
Found at i:81528227 original size:15 final size:15
Alignment explanation
Indices: 81528186--81528227 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
81528176 GAAAAATAAA
81528186 AATAAAAATAAAAAT
1 AATAAAAATAAAAAT
*
81528201 -TTAAGAAATAAAAAT
1 AATAA-AAATAAAAAT
*
81528216 AATAAAATTAAA
1 AATAAAAATAAA
81528228 TTTCAAACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 3 0.14
15 16 0.73
16 3 0.14
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (15 bp):
AATAAAAATAAAAAT
Found at i:81530762 original size:30 final size:29
Alignment explanation
Indices: 81530728--81530799 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
81530718 TGTTACGAGT
* * * *
81530728 GGACTTACTTGATTCTTTTTAATAGTATAA
1 GGACTAACTTGATTC-ATTTAATAATAGAA
* *
81530758 GGACTAAATTGATTCATTTAATAATAGAG
1 GGACTAACTTGATTCATTTAATAATAGAA
81530787 GGACTAACTTGAT
1 GGACTAACTTGAT
81530800 CTAGTCTATA
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
29 22 0.63
30 13 0.37
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.39
Consensus pattern (29 bp):
GGACTAACTTGATTCATTTAATAATAGAA
Found at i:81534806 original size:4 final size:4
Alignment explanation
Indices: 81534797--81534847 Score: 93
Period size: 4 Copynumber: 12.8 Consensus size: 4
81534787 AAAGAAGCAT
*
81534797 ATAC ATAC ATAC ATAC ATAC ACAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
81534845 ATA
1 ATA
81534848 TATATATAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 45 1.00
ACGTcount: A:0.51, C:0.25, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:81553599 original size:18 final size:17
Alignment explanation
Indices: 81553570--81553619 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 17
81553560 ACAACTTTTA
81553570 AAATTAATAATTATAATTT
1 AAATT-ATAATTAT-ATTT
*
81553589 AAATTATAATTATTTTT
1 AAATTATAATTATATTT
81553606 AAATATATAATTAT
1 AAAT-TATAATTAT
81553620 CATAAATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 7 0.24
18 17 0.59
19 5 0.17
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AAATTATAATTATATTT
Found at i:81553922 original size:20 final size:20
Alignment explanation
Indices: 81553897--81553935 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
81553887 CATATTGTTC
*
81553897 TTCCTATTTGAGTTTATCCT
1 TTCCTATATGAGTTTATCCT
81553917 TTCCTATATGAGTTTATCC
1 TTCCTATATGAGTTTATCC
81553936 GAGAGATAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.18, C:0.21, G:0.10, T:0.51
Consensus pattern (20 bp):
TTCCTATATGAGTTTATCCT
Found at i:81554136 original size:21 final size:20
Alignment explanation
Indices: 81554112--81554155 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
81554102 TTATTTTTAA
*
81554112 ATATTTATATTATAATATGAT
1 ATATTTATATTAT-ATATCAT
*
81554133 ATATTTATTTTATATATCAT
1 ATATTTATATTATATATCAT
81554153 ATA
1 ATA
81554156 AATTACCTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (20 bp):
ATATTTATATTATATATCAT
Found at i:81554182 original size:24 final size:26
Alignment explanation
Indices: 81554137--81554184 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
81554127 TATGATATAT
* *
81554137 TTATTTTATATATCATATAAATTACC
1 TTATTTTATATATAATAAAAATTACC
81554163 TTATTTTATA-A-AATAAAAATTA
1 TTATTTTATATATAATAAAAATTA
81554185 TCATATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
25 1 0.05
26 10 0.50
ACGTcount: A:0.46, C:0.06, G:0.00, T:0.48
Consensus pattern (26 bp):
TTATTTTATATATAATAAAAATTACC
Found at i:81567371 original size:6 final size:6
Alignment explanation
Indices: 81567360--81567389 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
81567350 AACCATGAAT
*
81567360 CTAGCA CTAGCA CTAGCA CTAGCA CAAGCA
1 CTAGCA CTAGCA CTAGCA CTAGCA CTAGCA
81567390 ATGGAAGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.37, C:0.33, G:0.17, T:0.13
Consensus pattern (6 bp):
CTAGCA
Done.