Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 28 of 259
Found at i:7861646 original size:17 final size:17
Alignment explanation
Indices: 7861591--7861649 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
7861581 ATCAAAAATA
*
7861591 TAATTTTAATAA-TTTT
1 TAATTTTTATAATTTTT
* * *
7861607 AAATTTTTAAAAAGTTTTA
1 TAATTTTT-ATAA-TTTTT
7861626 TAATTTTTATAATTTTT
1 TAATTTTTATAATTTTT
7861643 TAATTTT
1 TAATTTT
7861650 GAAAAATTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 5
0.73 0.16 0.11
Matches are distributed among these distances:
16 6 0.18
17 14 0.42
18 3 0.09
19 10 0.30
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (17 bp):
TAATTTTTATAATTTTT
Found at i:7880061 original size:49 final size:49
Alignment explanation
Indices: 7880004--7880191 Score: 243
Period size: 49 Copynumber: 3.8 Consensus size: 49
7879994 TAGTCAAAGC
*
7880004 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* * * * *
7880053 AATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAAT
* * *
7880104 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
* *
7880153 TATCCT-ATACACGTAGTAGCCTGCACTTAGTACTACACA
1 TAT-CTGGTACACATAGTAGCCTGCACTTAGTACTACACA
7880192 CGTGACTTCA
Statistics
Matches: 117, Mismatches: 19, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
49 74 0.63
50 3 0.03
51 40 0.34
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
Found at i:7880125 original size:100 final size:100
Alignment explanation
Indices: 7880009--7880196 Score: 342
Period size: 100 Copynumber: 1.9 Consensus size: 100
7879999 AAAGCTATCT
*
7880009 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAAT-CTGGTACACGTAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCT-ATACACGTAGTAGC
7880073 CTGCACTTAGTACTACACACGTGATCACAGTTTTCG
65 CTGCACTTAGTACTACACACGTGATCACAGTTTTCG
*
7880109 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCTATACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCTATACACGTAGTAGCC
7880174 TGCACTTAGTACTACACACGTGA
66 TGCACTTAGTACTACACACGTGA
7880197 CTTCACAATA
Statistics
Matches: 85, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
100 83 0.98
101 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (100 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCTATACACGTAGTAGCC
TGCACTTAGTACTACACACGTGATCACAGTTTTCG
Found at i:7884121 original size:6 final size:6
Alignment explanation
Indices: 7884103--7884132 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
7884093 GCAAATGAAT
7884103 CATTTC TCATTTC CATTTC CATTTC CATTT
1 CATTTC -CATTTC CATTTC CATTTC CATTT
7884133 TGAACAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (6 bp):
CATTTC
Found at i:7887165 original size:142 final size:138
Alignment explanation
Indices: 7886907--7887165 Score: 315
Period size: 142 Copynumber: 1.8 Consensus size: 138
7886897 TCATGAGTGC
* * * *
7886907 CAGTGTAAGACATGTCAGGGACATGCATCAGCATTGAGACGAGAGCTAGTATAAGACATGTCTGG
1 CAGTGTAAGACATGTCAGGGACATGCATCAACACTGAGACGAGAGCCAATATAAGACATGTCTGG
*
7886972 GACATGCATCGGCCTCAGGATATACAAGCTAGTGTAAGACCTGTTTAGGACATGGCGTCAGCTTA
66 GACATGCATCGGCCTCAGGATATACAAGCTAGTGTAAGACCTGTCTAGGACATGGCGTCAGCTTA
7887037 TTGTGTGT
131 TTGTGTGT
* * * * *
7887045 CAGTGTAAGACCTGTCAGGGACATGGCATCAACACTGATAGATGAGAGCCAATGTAAGACCTGTT
1 CAGTGTAAGACATGTCAGGGACAT-GCATCAACACTG--AGACGAGAGCCAATATAAGACATGTC
* * * * *
7887110 TGGGACATGGCATCGGTCTTGATG-TATGA-AAGTTAGTGTAAGACCTGTCTGGGACA
63 TGGGACAT-GCATCGG-CCTCAGGATAT-ACAAGCTAGTGTAAGACCTGTCTAGGACA
7887166 CGGCATCGAC
Statistics
Matches: 100, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
138 23 0.23
139 10 0.10
141 28 0.28
142 34 0.34
143 5 0.05
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (138 bp):
CAGTGTAAGACATGTCAGGGACATGCATCAACACTGAGACGAGAGCCAATATAAGACATGTCTGG
GACATGCATCGGCCTCAGGATATACAAGCTAGTGTAAGACCTGTCTAGGACATGGCGTCAGCTTA
TTGTGTGT
Found at i:7888459 original size:27 final size:30
Alignment explanation
Indices: 7888428--7888490 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 30
7888418 TGAATTTTGA
7888428 TGAAATA-GAGCTTATTG-A-G-CTAAATTG
1 TGAAATATGAGCTT-TTGAAGGACTAAATTG
*
7888455 TGAAA-ATGAGGTTTTGAAGGACTAAATTG
1 TGAAATATGAGCTTTTGAAGGACTAAATTG
7888484 TGAAATA
1 TGAAATA
7888491 AATATGCTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
26 4 0.13
27 11 0.37
28 1 0.03
29 13 0.43
30 1 0.03
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.32
Consensus pattern (30 bp):
TGAAATATGAGCTTTTGAAGGACTAAATTG
Found at i:7889076 original size:42 final size:43
Alignment explanation
Indices: 7888966--7889111 Score: 129
Period size: 43 Copynumber: 3.4 Consensus size: 43
7888956 AGACATCGTA
* * * *
7888966 TAAGACCGTGTCTGGGACACAGGCCTCG--ATTGAGATTTACATA
1 TAAGACCATGTCTGGGACAGAGGCATCGATATTGA-A-TTACATG
** * *
7889009 TAAGACCATGTCTGGGACATCGGCATCG-TATCTG-ATTTCGTG
1 TAAGACCATGTCTGGGACAGAGGCATCGATAT-TGAATTACATG
* *
7889051 TAAGACCCTGTCTGGGATAGAGGCATCGATATTGAATTACATG
1 TAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACATG
**
7889094 TAAGACCACATCTGGGAC
1 TAAGACCATGTCTGGGAC
7889112 GTCGGTATTG
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
42 30 0.37
43 48 0.59
44 2 0.02
45 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACAGAGGCATCGATATTGAATTACATG
Found at i:7889109 original size:85 final size:85
Alignment explanation
Indices: 7888961--7889116 Score: 199
Period size: 85 Copynumber: 1.8 Consensus size: 85
7888951 GTTTGAGACA
* * **
7888961 TCGTATAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
1 TCGTATAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCTGGGA
7889026 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * *
7889046 TCGTGTAAGACCCTGTCTGGGATAGAGGCATCGATATTGA-A-TTACATGTAAGACCACATCTGG
1 TCGTATAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACATCTGG
*
7889109 GACGTCGG
64 GACATCGG
7889117 TATTGTACTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
85 54 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (85 bp):
TCGTATAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACATCTGGGA
CATCGGCATCGTATCTGATT
Found at i:7902905 original size:5 final size:5
Alignment explanation
Indices: 7902897--7902935 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
7902887 GTTTATAAAG
*
7902897 AAAAT AAAAT AAACA- AATAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAA-AT AAAAT AAAAT AAAAT AAAAT AAAA
7902936 ATAGAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 1 0.03
5 28 0.93
6 1 0.03
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:7902920 original size:15 final size:14
Alignment explanation
Indices: 7902891--7902935 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
7902881 AATTTAGTTT
*
7902891 ATAAAGAAAATAAA
1 ATAAACAAAATAAA
7902905 ATAAACAAATATAAA
1 ATAAACAAA-ATAAA
*
7902920 ATAAAATAAAATAAA
1 AT-AAACAAAATAAA
7902935 A
1 A
7902936 ATAGAATTAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 8 0.30
15 13 0.48
16 6 0.22
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.18
Consensus pattern (14 bp):
ATAAACAAAATAAA
Found at i:7917038 original size:31 final size:31
Alignment explanation
Indices: 7917000--7917062 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
7916990 GAAAACATAC
*
7917000 ATATGTATCTCATAAGTTGTATGGCATGCAT
1 ATATGTATCTCATAACTTGTATGGCATGCAT
7917031 ATATGTATCTCATAACTTGTATGGCATGCAT
1 ATATGTATCTCATAACTTGTATGGCATGCAT
7917062 A
1 A
7917063 CCTCAAACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.38
Consensus pattern (31 bp):
ATATGTATCTCATAACTTGTATGGCATGCAT
Found at i:7925058 original size:19 final size:19
Alignment explanation
Indices: 7925023--7925062 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7925013 ATTTTTAAAA
*
7925023 ATTTAAAATTATTAAAATT
1 ATTTAAAATTATAAAAATT
7925042 ATTTGAAAA-TATAAAAATT
1 ATTT-AAAATTATAAAAATT
7925061 AT
1 AT
7925063 AAAAATGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
ATTTAAAATTATAAAAATT
Found at i:7925513 original size:20 final size:21
Alignment explanation
Indices: 7925468--7925514 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 21
7925458 TTTGTTTTTA
*
7925468 ATTTTAGTCCACATTATCGTT
1 ATTTTAGTCCACATTATCGTG
*
7925489 ATTTT-GTCCACATTATTGTG
1 ATTTTAGTCCACATTATCGTG
*
7925509 GTTTTA
1 ATTTTA
7925515 CTTTGCCCAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.51
Consensus pattern (21 bp):
ATTTTAGTCCACATTATCGTG
Found at i:7926100 original size:12 final size:12
Alignment explanation
Indices: 7926083--7926162 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 12
7926073 CTAAAAAAAA
7926083 TTAAAATTATTT
1 TTAAAATTATTT
7926095 TTAAAA-TATTGTT
1 TTAAAATTA-T-TT
7926108 TTAAATATATATTCT
1 TTAAA-AT-TATT-T
*
7926123 TTAAAA-TA-AT
1 TTAAAATTATTT
*
7926133 TTAAAATAATTT
1 TTAAAATTATTT
*
7926145 TTCAACATT-TTT
1 TT-AAAATTATTT
7926157 TTAAAA
1 TTAAAA
7926163 AGTTTAAAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
10 7 0.13
11 6 0.11
12 17 0.32
13 11 0.21
14 3 0.06
15 7 0.13
16 2 0.04
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.51
Consensus pattern (12 bp):
TTAAAATTATTT
Found at i:7933914 original size:19 final size:19
Alignment explanation
Indices: 7933881--7933920 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
7933871 AAAATATTAT
*
7933881 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
7933900 ATTAA-TTTAATTTTACTTG
1 ATTAATTTTAA-TTTACTTG
7933919 AT
1 AT
7933921 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:7939309 original size:32 final size:31
Alignment explanation
Indices: 7939232--7939309 Score: 84
Period size: 32 Copynumber: 2.4 Consensus size: 31
7939222 TGCATTTAGT
* *
7939232 ATTAAATTAGTTTATTTAAATTAATATTTTTA
1 ATTAAATTA-TTAATGTAAATTAATATTTTTA
* *
7939264 ATTACAGTAATTAATGTAAATTAATATTTCTTA
1 ATTA-AATTATTAATGTAAATTAATATTT-TTA
*
7939297 TTTAAATTATTAA
1 ATTAAATTATTAA
7939310 ATATAATTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
32 28 0.76
33 9 0.24
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (31 bp):
ATTAAATTATTAATGTAAATTAATATTTTTA
Found at i:7939581 original size:19 final size:19
Alignment explanation
Indices: 7939536--7939585 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
7939526 TTATTTTAAC
7939536 TTTTT-AAT-TAATAATTA
1 TTTTTAAATATAATAATTA
**
7939553 TAAATTAAATATAATAATTA
1 T-TTTTAAATATAATAATTA
7939573 TTTTTAAATATAA
1 TTTTTAAATATAA
7939586 ATTTAATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 1 0.04
18 2 0.08
19 13 0.50
20 10 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTTTAAATATAATAATTA
Found at i:7950913 original size:30 final size:30
Alignment explanation
Indices: 7950858--7950914 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
7950848 ACCTAAACTA
* *
7950858 TTTTTATCAGTTTGGACCTTGTACTTTCTT
1 TTTTTATCAGTTTGGACCGTATACTTTCTT
* *
7950888 TTTTTATTAGTTTGGCCCGTATACTTT
1 TTTTTATCAGTTTGGACCGTATACTTT
7950915 AATTCTATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.56
Consensus pattern (30 bp):
TTTTTATCAGTTTGGACCGTATACTTTCTT
Found at i:7951969 original size:14 final size:14
Alignment explanation
Indices: 7951941--7951977 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
7951931 ATTGATATTT
7951941 ATAATTT-TTTT-A
1 ATAATTTATTTTAA
*
7951953 ATATTTTATTTTAA
1 ATAATTTATTTTAA
7951967 ATAATTTATTT
1 ATAATTTATTT
7951978 GTTTTGATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
12 6 0.29
13 4 0.19
14 11 0.52
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (14 bp):
ATAATTTATTTTAA
Found at i:7954856 original size:19 final size:19
Alignment explanation
Indices: 7954832--7954872 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7954822 AACTGATTGA
7954832 ACAACCTCCGATTGTAAAG
1 ACAACCTCCGATTGTAAAG
7954851 ACAACCTCCGATTGTAAAG
1 ACAACCTCCGATTGTAAAG
7954870 ACA
1 ACA
7954873 TAACCTATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.39, C:0.27, G:0.15, T:0.20
Consensus pattern (19 bp):
ACAACCTCCGATTGTAAAG
Found at i:7960476 original size:16 final size:18
Alignment explanation
Indices: 7960449--7960482 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
7960439 TTGTGCATGT
7960449 ATTATATTTTAAA-AAAA
1 ATTATATTTTAAATAAAA
7960466 ATTAT-TTTTAAATAAAA
1 ATTATATTTTAAATAAAA
7960483 GTTAATCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTATATTTTAAATAAAA
Found at i:7960482 original size:17 final size:17
Alignment explanation
Indices: 7960449--7960482 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
7960439 TTGTGCATGT
7960449 ATTATATTTTAAAAAAA
1 ATTATATTTTAAAAAAA
*
7960466 ATTAT-TTTTAAATAAA
1 ATTATATTTTAAAAAAA
7960482 A
1 A
7960483 GTTAATCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
ATTATATTTTAAAAAAA
Found at i:7962236 original size:10 final size:11
Alignment explanation
Indices: 7962203--7962245 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
7962193 TAACCAACTC
7962203 TTATAATTTTT
1 TTATAATTTTT
* *
7962214 TGATAATTATT
1 TTATAATTTTT
7962225 TTA-AATTTTT
1 TTATAATTTTT
7962235 TTATGAATTTT
1 TTAT-AATTTT
7962246 AACAATTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
10 9 0.35
11 11 0.42
12 6 0.23
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.65
Consensus pattern (11 bp):
TTATAATTTTT
Found at i:7962659 original size:30 final size:30
Alignment explanation
Indices: 7962625--7962684 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
7962615 ACTTAACAAG
* *
7962625 CAAATATCTCTAAAATAATAATAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
7962655 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
7962685 TAATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:7965466 original size:46 final size:44
Alignment explanation
Indices: 7965362--7965469 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
7965352 TATCTTTGAC
** * * *
7965362 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
7965406 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
7965452 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
7965470 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:7972205 original size:11 final size:11
Alignment explanation
Indices: 7972189--7972214 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
7972179 CAAATGACAA
7972189 GATTGTGATAG
1 GATTGTGATAG
7972200 GATTGTGATAG
1 GATTGTGATAG
7972211 GATT
1 GATT
7972215 TCAGAAGCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.35, T:0.38
Consensus pattern (11 bp):
GATTGTGATAG
Found at i:7972919 original size:17 final size:17
Alignment explanation
Indices: 7972878--7972926 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
7972868 TATTATATAT
* *
7972878 TTTATATAATAATTAAA
1 TTTAAATAATTATTAAA
*
7972895 TTTAAATAATTATTAAC
1 TTTAAATAATTATTAAA
* *
7972912 TTTGAATATTTATTA
1 TTTAAATAATTATTA
7972927 TACATATATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAAATAATTATTAAA
Found at i:7984045 original size:34 final size:34
Alignment explanation
Indices: 7983954--7984045 Score: 166
Period size: 34 Copynumber: 2.7 Consensus size: 34
7983944 GTATCAGTTT
* *
7983954 GGCCTTAGCCCATCTCAGTAATAATAAGCATTAG
1 GGCCTTAGCCCATCTCAGTAACAGTAAGCATTAG
7983988 GGCCTTAGCCCATCTCAGTAACAGTAAGCATTAG
1 GGCCTTAGCCCATCTCAGTAACAGTAAGCATTAG
7984022 GGCCTTAGCCCATCTCAGTAACAG
1 GGCCTTAGCCCATCTCAGTAACAG
7984046 ATATGAAGAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 56 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (34 bp):
GGCCTTAGCCCATCTCAGTAACAGTAAGCATTAG
Found at i:7995307 original size:13 final size:13
Alignment explanation
Indices: 7995291--7995335 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 13
7995281 CTTCCCCATT
7995291 TAAAAAAATAAAA
1 TAAAAAAATAAAA
*
7995304 T---AAAATAACA
1 TAAAAAAATAAAA
7995314 TAAAAAAATAAATA
1 TAAAAAAATAAA-A
7995328 TAAAAAAA
1 TAAAAAAA
7995336 ACTTACAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
10 9 0.35
13 8 0.31
14 9 0.35
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (13 bp):
TAAAAAAATAAAA
Found at i:7999028 original size:16 final size:16
Alignment explanation
Indices: 7999009--7999050 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
7998999 TTATTTTTCT
*
7999009 TATATATTCTTTTATA
1 TATATATTCTATTATA
*
7999025 TATATATAT-TATTATG
1 TATATAT-TCTATTATA
7999041 TATATATTCT
1 TATATATTCT
7999051 CTTTTTTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.05
16 20 0.91
17 1 0.05
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (16 bp):
TATATATTCTATTATA
Found at i:7999044 original size:18 final size:18
Alignment explanation
Indices: 7999009--7999047 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
7998999 TTATTTTTCT
* *
7999009 TATATATTCTTTTATATA
1 TATATATTATTATATATA
*
7999027 TATATATTATTATGTATA
1 TATATATTATTATATATA
7999045 TAT
1 TAT
7999048 TCTCTTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (18 bp):
TATATATTATTATATATA
Found at i:8002320 original size:17 final size:18
Alignment explanation
Indices: 8002300--8002338 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8002290 AAAATAATAA
*
8002300 TAAAATAATAATAG-AAT
1 TAAAATAAAAATAGAAAT
8002317 TAAAATAAAAATAGAAAT
1 TAAAATAAAAATAGAAAT
8002335 TAAA
1 TAAA
8002339 GATTTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.26
Consensus pattern (18 bp):
TAAAATAAAAATAGAAAT
Found at i:8017777 original size:12 final size:12
Alignment explanation
Indices: 8017760--8017785 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8017750 AATGCTCTAT
8017760 GTTATCTAGTAA
1 GTTATCTAGTAA
8017772 GTTATCTAGTAA
1 GTTATCTAGTAA
8017784 GT
1 GT
8017786 GATAATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (12 bp):
GTTATCTAGTAA
Found at i:8018724 original size:6 final size:6
Alignment explanation
Indices: 8018715--8018749 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
8018705 TATATATATC
*
8018715 TTTGTA TTTGTA TTTTTA TTTGTA TTTGTA TTTGT
1 TTTGTA TTTGTA TTTGTA TTTGTA TTTGTA TTTGT
8018750 TGCAATGACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.14, C:0.00, G:0.14, T:0.71
Consensus pattern (6 bp):
TTTGTA
Found at i:8019080 original size:26 final size:26
Alignment explanation
Indices: 8019051--8019103 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
8019041 TAGTGATTTG
*
8019051 TTTTATATTCTAATTTTAATTTCTTA
1 TTTTATATTCTAATGTTAATTTCTTA
*
8019077 TTTTATATTCTGATGTTAATTTCTTA
1 TTTTATATTCTAATGTTAATTTCTTA
8019103 T
1 T
8019104 GTCCCATGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.08, G:0.04, T:0.64
Consensus pattern (26 bp):
TTTTATATTCTAATGTTAATTTCTTA
Found at i:8021164 original size:35 final size:35
Alignment explanation
Indices: 8021106--8021200 Score: 95
Period size: 35 Copynumber: 2.7 Consensus size: 35
8021096 ATAAATCTAG
* **
8021106 TATAAATACAATTTAATTTATATTTT-ATTATTTGAT
1 TATAAATATAATTTAA-AAATATTTTGA-TATTTGAT
* *
8021142 T-TAAATATAATTTGTAAAATATTTTGATATTTTAT
1 TATAAATATAATTT-AAAAATATTTTGATATTTGAT
*
8021177 TATGAATATAATTTAAAAATATTT
1 TATAAATATAATTTAAAAATATTT
8021201 AAATATTATT
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
35 35 0.71
36 14 0.29
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.53
Consensus pattern (35 bp):
TATAAATATAATTTAAAAATATTTTGATATTTGAT
Found at i:8021420 original size:21 final size:21
Alignment explanation
Indices: 8021396--8021448 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
8021386 CATTGTTTCT
*
8021396 AATCTCACCGCTATAGTATCC
1 AATCTCACCGCTATAGTAACC
* *
8021417 AATCTCACCGTTATAGTAACT
1 AATCTCACCGCTATAGTAACC
8021438 AATCTCACCGC
1 AATCTCACCGC
8021449 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.32, G:0.09, T:0.28
Consensus pattern (21 bp):
AATCTCACCGCTATAGTAACC
Found at i:8023098 original size:25 final size:25
Alignment explanation
Indices: 8023062--8023115 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
8023052 AAAAATTGTA
*
8023062 GTAAAAATTTTTTAAGGAATAAACT
1 GTAAAAAATTTTTAAGGAATAAACT
8023087 GTAAAAAATTTTTAAGGAATAAACT
1 GTAAAAAATTTTTAAGGAATAAACT
8023112 GTAA
1 GTAA
8023116 TCTTATTATT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.50, C:0.04, G:0.13, T:0.33
Consensus pattern (25 bp):
GTAAAAAATTTTTAAGGAATAAACT
Found at i:8025874 original size:10 final size:10
Alignment explanation
Indices: 8025855--8025886 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
8025845 TTTTAGGATT
8025855 TTAT-TTTAA
1 TTATCTTTAA
8025864 TTATCTTTAA
1 TTATCTTTAA
8025874 TTATCTTTAA
1 TTATCTTTAA
8025884 TTA
1 TTA
8025887 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:8028826 original size:5 final size:5
Alignment explanation
Indices: 8028805--8028882 Score: 90
Period size: 5 Copynumber: 15.2 Consensus size: 5
8028795 GCAACCCAAT
8028805 TTTTA CTTTTAA TTTTA TTTTA TTTTA TTTTA TTTTTA TTTTTA CTTTTA
1 TTTTA -TTTT-A TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA -TTTTA
8028855 -TTTA TTTTA TTTTA --TTA TTTTA TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
8028883 GCAGATATTA
Statistics
Matches: 66, Mismatches: 1, Indels: 11
0.85 0.01 0.14
Matches are distributed among these distances:
3 3 0.05
4 4 0.06
5 34 0.52
6 24 0.36
7 1 0.02
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:8028842 original size:27 final size:27
Alignment explanation
Indices: 8028805--8028882 Score: 104
Period size: 27 Copynumber: 2.9 Consensus size: 27
8028795 GCAACCCAAT
*
8028805 TTTTACTTTTAATTTTATTTTATTTTA
1 TTTTATTTTTAATTTTATTTTATTTTA
*
8028832 TTTTATTTTTATTTTTACTTTTA-TTTA
1 TTTTATTTTTAATTTTA-TTTTATTTTA
*
8028859 TTTTATTTTATTATTTTATTTTAT
1 TTTTATTTT-TAATTTTATTTTAT
8028883 GCAGATATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
27 33 0.75
28 11 0.25
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (27 bp):
TTTTATTTTTAATTTTATTTTATTTTA
Found at i:8028847 original size:22 final size:22
Alignment explanation
Indices: 8028805--8028882 Score: 90
Period size: 22 Copynumber: 3.5 Consensus size: 22
8028795 GCAACCCAAT
*
8028805 TTTTACTTTTAATTTTA-TTTTA
1 TTTTA-TTTTATTTTTATTTTTA
8028827 TTTTATTTTATTTTTATTTTTA
1 TTTTATTTTATTTTTATTTTTA
8028849 CTTTTA-TTTA-TTTTATTTTATTA
1 -TTTTATTTTATTTTTA-TTT-TTA
8028872 TTTTATTTTAT
1 TTTTATTTTAT
8028883 GCAGATATTA
Statistics
Matches: 49, Mismatches: 1, Indels: 10
0.82 0.02 0.17
Matches are distributed among these distances:
21 15 0.31
22 22 0.45
23 12 0.24
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTATTTTATTTTTATTTTTA
Found at i:8028848 original size:33 final size:32
Alignment explanation
Indices: 8028803--8028880 Score: 111
Period size: 33 Copynumber: 2.3 Consensus size: 32
8028793 AGGCAACCCA
*
8028803 ATTTTTACTTTTAATTTTATTTTATTTTATTTT
1 ATTTTTATTTTTAATTTTA-TTTATTTTATTTT
*
8028836 ATTTTTATTTTTACTTTTATTTATTTTATTTT
1 ATTTTTATTTTTAATTTTATTTATTTTATTTT
8028868 ATTATTTTATTTT
1 A-T-TTTTATTTT
8028881 ATGCAGATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
32 14 0.34
33 18 0.44
34 9 0.22
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (32 bp):
ATTTTTATTTTTAATTTTATTTATTTTATTTT
Found at i:8028853 original size:7 final size:6
Alignment explanation
Indices: 8028803--8028880 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
8028793 AGGCAACCCA
* *
8028803 ATTTTT ACTTTT AATTTT A-TTTT A-TTTT A-TTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
* *
8028848 ACTTTT ATTTATT TTATTTT ATTATTTT ATTTT
1 ATTTTT ATTT-TT AT-TTTT A-T-TTTT ATTTT
8028881 ATGCAGATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 8
0.82 0.08 0.11
Matches are distributed among these distances:
5 15 0.24
6 32 0.52
7 6 0.10
8 9 0.15
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (6 bp):
ATTTTT
Found at i:8036443 original size:25 final size:25
Alignment explanation
Indices: 8036408--8036455 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
8036398 AGACACACCA
* *
8036408 CAGCTCTTATGAGCTTACTGATTTT
1 CAGCTCGTATGAGCTTACCGATTTT
8036433 CAGCTCGTATGAGCTTACCGATT
1 CAGCTCGTATGAGCTTACCGATT
8036456 CATAGCTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATTTT
Found at i:8036462 original size:25 final size:25
Alignment explanation
Indices: 8036408--8036471 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
8036398 AGACACACCA
* * *
8036408 CAGCTCTTATGAGCTTACTGATTTT
1 CAGCTCGTATGAGCTTACCGATTAT
8036433 CAGCTCGTATGAGCTTACCGATTCAT
1 CAGCTCGTATGAGCTTACCGATT-AT
*
8036459 -AGCTTGTATGAGC
1 CAGCTCGTATGAGC
8036472 ATACATGTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 33 0.97
26 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATTAT
Found at i:8037364 original size:30 final size:30
Alignment explanation
Indices: 8037330--8037387 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
8037320 CCGAGCCTTG
8037330 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
1 GGGCAAAAGTGTAAATATGCAAAAGTTTAA
* * * *
8037360 GGGCAAAATTGTAATTTTTCAAAAGTTT
1 GGGCAAAAGTGTAAATATGCAAAAGTTT
8037388 GAGTTAATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.41, C:0.07, G:0.21, T:0.31
Consensus pattern (30 bp):
GGGCAAAAGTGTAAATATGCAAAAGTTTAA
Found at i:8038143 original size:68 final size:65
Alignment explanation
Indices: 8038071--8038242 Score: 177
Period size: 67 Copynumber: 2.6 Consensus size: 65
8038061 CATCATGTGT
* * * *
8038071 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCAT
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACAAGGTGAGACACCAT
8038135 GTAG
62 GTAG
** * *
8038139 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCAAGGTGAAAGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACAAGGTG--AGACACCATGT
8038204 AG
64 AG
* * *
8038206 ACAAGAGAGCTACGAGATAAAT-TAGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
8038243 GGTGGTACTG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
64 27 0.30
65 3 0.03
66 16 0.18
67 31 0.34
68 13 0.14
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (65 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACAAGGTGAGACACCATGTAG
Found at i:8038176 original size:64 final size:65
Alignment explanation
Indices: 8038095--8038251 Score: 201
Period size: 67 Copynumber: 2.4 Consensus size: 65
8038085 AGACATTATG
* * * * *
8038095 ATGTAGCTAGGTCGCATGGGTGATACTATGTG-TACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAGGTGAGACACCATGTAGACAAGAGAGCTACGAGATAA
* * *
8038159 ATGTAGCTAGGTCGCATGCGTGGTTCAAGGTGAAAGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTAGGTG--AGACACCATGTAGACAAGAGAGCTACGAGAT
8038224 AA
64 AA
*
8038226 AT-TAGCTAGGTCACATGGGTGGTACT
1 ATGTAGCTAGGTCGCATGGGTGGTACT
8038252 GAGTATTCAC
Statistics
Matches: 78, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
64 27 0.35
66 20 0.26
67 31 0.40
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.24
Consensus pattern (65 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTAGGTGAGACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:8040224 original size:18 final size:19
Alignment explanation
Indices: 8040187--8040224 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
8040177 AATTTGATTA
*
8040187 ATTATTGAGTTCATCCATG
1 ATTATTGAGTTCATACATG
*
8040206 ATTATTG-GTTCATATATG
1 ATTATTGAGTTCATACATG
8040224 A
1 A
8040225 ATTTACATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.45
Consensus pattern (19 bp):
ATTATTGAGTTCATACATG
Found at i:8044703 original size:15 final size:16
Alignment explanation
Indices: 8044683--8044712 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8044673 TTAAAAATAG
8044683 AAAAAGTT-TGAACTA
1 AAAAAGTTATGAACTA
8044698 AAAAAGTTATGAACT
1 AAAAAGTTATGAACT
8044713 CTAAAAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (16 bp):
AAAAAGTTATGAACTA
Found at i:8060670 original size:6 final size:6
Alignment explanation
Indices: 8060661--8060693 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
8060651 TCTTTTTATT
*
8060661 TTTTTA TTTTTA TTTTTA TTTTTA TTTTCA TTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT
8060694 CAATTTTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:8060699 original size:18 final size:18
Alignment explanation
Indices: 8060661--8060700 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8060651 TCTTTTTATT
* **
8060661 TTTTTATTTTTATTTTTA
1 TTTTTATTTTCATTTCAA
8060679 TTTTTATTTTCATTTCAA
1 TTTTTATTTTCATTTCAA
8060697 TTTT
1 TTTT
8060701 ATTATTTTCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTCATTTCAA
Found at i:8063601 original size:17 final size:16
Alignment explanation
Indices: 8063579--8063618 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 16
8063569 TCTCTTTGCT
8063579 TTAGTTTAATTAGTTAA
1 TTAGTTTAATT-GTTAA
8063596 TTAG-TT--TTGTTAA
1 TTAGTTTAATTGTTAA
8063609 TTAGTTTAAT
1 TTAGTTTAAT
8063619 AAACAACCCC
Statistics
Matches: 20, Mismatches: 0, Indels: 7
0.74 0.00 0.26
Matches are distributed among these distances:
13 9 0.45
14 4 0.20
16 3 0.15
17 4 0.20
ACGTcount: A:0.30, C:0.00, G:0.12, T:0.57
Consensus pattern (16 bp):
TTAGTTTAATTGTTAA
Found at i:8067456 original size:32 final size:32
Alignment explanation
Indices: 8067420--8067481 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
8067410 TTAGGGGGTT
*
8067420 AGAGTTGTAACACCCTAAAATTTTTATTTCGG
1 AGAGTTGTAACACCCTAAAATTTCTATTTCGG
8067452 AGAGTTGTAACACCCTAAAATTTCTATTTC
1 AGAGTTGTAACACCCTAAAATTTCTATTTC
8067482 AGCTTTCGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (32 bp):
AGAGTTGTAACACCCTAAAATTTCTATTTCGG
Found at i:8070453 original size:14 final size:15
Alignment explanation
Indices: 8070422--8070457 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
8070412 TTTATTAATC
8070422 ATATATATAACTTAT
1 ATATATATAACTTAT
8070437 ATATAT-TAAC-TAT
1 ATATATATAACTTAT
8070450 -TATATATA
1 ATATATATA
8070458 GAATACCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 5 0.25
13 5 0.25
14 4 0.20
15 6 0.30
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATATAACTTAT
Found at i:8070570 original size:32 final size:32
Alignment explanation
Indices: 8070533--8070597 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
8070523 GATTTTAATC
*
8070533 TATAATTTAATTTTTACCCTATACACATTTAG
1 TATAATTCAATTTTTACCCTATACACATTTAG
*
8070565 TATAATTCAATTTTTACCCTATATACATTTAG
1 TATAATTCAATTTTTACCCTATACACATTTAG
8070597 T
1 T
8070598 CCTTATACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.34, C:0.15, G:0.03, T:0.48
Consensus pattern (32 bp):
TATAATTCAATTTTTACCCTATACACATTTAG
Found at i:8072470 original size:16 final size:16
Alignment explanation
Indices: 8072440--8072469 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8072430 ATTTTATAAC
8072440 ATTTTTATAATTTTTA
1 ATTTTTATAATTTTTA
8072456 ATTTTTA-AATTTTT
1 ATTTTTATAATTTTT
8072470 TTTCTTATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
ATTTTTATAATTTTTA
Found at i:8073266 original size:32 final size:33
Alignment explanation
Indices: 8073220--8073283 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
8073210 TTTCATATGT
8073220 TGGGATTAGGGTTTTT-TAGGGTTAGGGTTAGGG
1 TGGGATTAGGGTTTTTAT-GGGTTAGGGTTAGGG
*
8073253 TGGG-TTAGGGTTTTTATGGTTTAGGGTTAGG
1 TGGGATTAGGGTTTTTATGGGTTAGGGTTAGG
8073284 TTTTTTAAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 24 0.83
33 5 0.17
ACGTcount: A:0.14, C:0.00, G:0.44, T:0.42
Consensus pattern (33 bp):
TGGGATTAGGGTTTTTATGGGTTAGGGTTAGGG
Found at i:8073279 original size:22 final size:22
Alignment explanation
Indices: 8073254--8073302 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
8073244 GGGTTAGGGT
*
8073254 GGGTTAGGGTTTTTATGGTTTA
1 GGGTTAGGGTTTTTAAGGTTTA
*
8073276 GGGTTAGGTTTTTTAAGGTTTA
1 GGGTTAGGGTTTTTAAGGTTTA
*
8073298 TGGTT
1 GGGTT
8073303 TTTGTAAGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.14, C:0.00, G:0.35, T:0.51
Consensus pattern (22 bp):
GGGTTAGGGTTTTTAAGGTTTA
Found at i:8073290 original size:15 final size:17
Alignment explanation
Indices: 8073275--8073314 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
8073265 TTTATGGTTT
8073275 AGGGTTA-GGTTTTTTA
1 AGGGTTATGGTTTTTTA
*
8073291 AGGTTTATGGTTTTTGTA
1 AGGGTTATGGTTTTT-TA
8073309 AGGGTT
1 AGGGTT
8073315 TAATTAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 7 0.35
18 7 0.35
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (17 bp):
AGGGTTATGGTTTTTTA
Found at i:8073345 original size:26 final size:26
Alignment explanation
Indices: 8073314--8073381 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
8073304 TTGTAAGGGT
*
8073314 TTAATTAATTAAATTAGTGTGTAAGA
1 TTAATTAATTAAATTAGGGTGTAAGA
8073340 TTAATTAATTAAATTAGGGTGTAAGA
1 TTAATTAATTAAATTAGGGTGTAAGA
8073366 TTAATTAATTAAATTA
1 TTAATTAATTAAATTA
8073382 AATATTAATT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.43
Consensus pattern (26 bp):
TTAATTAATTAAATTAGGGTGTAAGA
Found at i:8073654 original size:126 final size:125
Alignment explanation
Indices: 8073511--8073900 Score: 426
Period size: 126 Copynumber: 3.1 Consensus size: 125
8073501 TTTTGGTTTT
* * * * * * * * *
8073511 TTTTTCTTCAGTAGTATCTAGAAAAAAAAAATTAAGAAGAAGTTTCAGAAGAAATAGTATCCAAA
1 TTTTTCTACAGTGGTATCT-GAAAAAAAAATTTGAGAAGACGTTTCTGAAAAAATAGTGTCAAAA
* * * *
8073576 ACGCTTCAAGTAGGATGCACTGTCAGCAAAATTCCTGAAAAATA-CTCCCACGTGGATGCTT
65 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAA-AGCTCCCACGTGGACGCTC
* * *
8073637 TTTTTCTACAGTGGTATCTGAGAAAATAATTTTGAGAAGACGCTTT-TGAAAAAATAGTGTAAAA
1 TTTTTCTACAGTGGTATCTGA-AAAAAAAATTTGAGAAGACG-TTTCTGAAAAAATAGTGTCAAA
* * *
8073701 AACGCTTTAAGCAGGATGCACTGTCAGCAAAAGTATTGAAAAAAGCTCCCACGTGGACGCTC
64 AACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
** * * * *
8073763 TTTTGATACAGTGGTATCTGAAAAAATAATTGTGAGATGACCTTTCTGAACAAATAGTGTCAAAA
1 TTTTTCTACAGTGGTATCTGAAAAAAAAATT-TGAGAAGACGTTTCTGAAAAAATAGTGTCAAAA
* * * * * *
8073828 ATGCTTCATGCAGTATGCACTTTCAGCAAAATTACT-AAGAAAAGCTCTCACATGGACGCTC
65 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAA-AAAAGCTCCCACGTGGACGCTC
8073889 TTTTTCTACAGT
1 TTTTTCTACAGT
8073901 AGTTCCTATT
Statistics
Matches: 219, Mismatches: 39, Indels: 12
0.81 0.14 0.04
Matches are distributed among these distances:
125 15 0.07
126 201 0.92
127 3 0.01
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.29
Consensus pattern (125 bp):
TTTTTCTACAGTGGTATCTGAAAAAAAAATTTGAGAAGACGTTTCTGAAAAAATAGTGTCAAAAA
CGCTTCAAGCAGGATGCACTGTCAGCAAAATTACTGAAAAAAGCTCCCACGTGGACGCTC
Found at i:8077479 original size:18 final size:18
Alignment explanation
Indices: 8077458--8077492 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8077448 AAAAGGAAAC
*
8077458 ATATAAGGGTTAGGATAT
1 ATATAAGGGCTAGGATAT
8077476 ATATAAGGGCTAGGATA
1 ATATAAGGGCTAGGATA
8077493 CGCACCTGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.29, T:0.29
Consensus pattern (18 bp):
ATATAAGGGCTAGGATAT
Found at i:8078121 original size:7 final size:7
Alignment explanation
Indices: 8078111--8078157 Score: 67
Period size: 7 Copynumber: 6.7 Consensus size: 7
8078101 TTGTATACAT
8078111 AATACTA
1 AATACTA
8078118 AATACTA
1 AATACTA
*
8078125 AATAGTA
1 AATACTA
*
8078132 AATATTA
1 AATACTA
*
8078139 AATATTA
1 AATACTA
8078146 AATACTA
1 AATACTA
8078153 AATAC
1 AATAC
8078158 GAAACGAGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.57, C:0.09, G:0.02, T:0.32
Consensus pattern (7 bp):
AATACTA
Found at i:8079206 original size:50 final size:51
Alignment explanation
Indices: 8079094--8079206 Score: 142
Period size: 48 Copynumber: 2.3 Consensus size: 51
8079084 AAAAAATTAT
* **
8079094 AAAATTAAAATTAAAATTGCATAAATGAAAAAAAAATATAAAATTGTATTGA
1 AAAATTAAAATTAAAATTACATAAAT-AAAAAAAAATATAAAATACTATTGA
* *
8079146 AAAATT--AATTAAAATTACATAAAT-TAAAAAAATATTAAATACTATTGA
1 AAAATTAAAATTAAAATTACATAAATAAAAAAAAATATAAAATACTATTGA
*
8079194 AATATTAAAATTA
1 AAAATTAAAATTA
8079207 TCACTTACCA
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
48 25 0.47
50 22 0.42
52 6 0.11
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (51 bp):
AAAATTAAAATTAAAATTACATAAATAAAAAAAAATATAAAATACTATTGA
Found at i:8079406 original size:10 final size:10
Alignment explanation
Indices: 8079361--8079408 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
8079351 GCTTTGAAAA
8079361 AATTTGAGAG
1 AATTTGAGAG
*
8079371 AATATGAGAG
1 AATTTGAGAG
*
8079381 AATTTTTAGAAG
1 AA-TTTGAG-AG
8079393 AATTTGAGAG
1 AATTTGAGAG
8079403 AATTTG
1 AATTTG
8079409 GATAGGAGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 19 0.59
11 9 0.28
12 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (10 bp):
AATTTGAGAG
Found at i:8087270 original size:9 final size:9
Alignment explanation
Indices: 8087238--8087441 Score: 65
Period size: 10 Copynumber: 21.6 Consensus size: 9
8087228 CATAAAACCT
*
8087238 TAAAAATATT
1 TAAAAAT-TA
8087248 TAAAAATTA
1 TAAAAATTA
8087257 CTAAAAATTA
1 -TAAAAATTA
8087267 TAAAGAATTA
1 TAAA-AATTA
* *
8087277 GGAAAATTTA
1 -TAAAAATTA
*
8087287 TTAAAATTA
1 TAAAAATTA
*
8087296 TTTAAAA-TA
1 -TAAAAATTA
* *
8087305 GAAAAAATA
1 TAAAAATTA
8087314 TAAACAATTA
1 TAAA-AATTA
* *
8087324 T-ATAATCACA
1 TAAAAAT--TA
*
8087334 AAAAAATTTA
1 TAAAAA-TTA
* *
8087344 CACAAAAGTA
1 TA-AAAATTA
*
8087354 TTAAAATTA
1 TAAAAATTA
*
8087363 TTTAAAAATTG
1 --TAAAAATTA
* *
8087374 TGAAATTTA
1 TAAAAATTA
*
8087383 TTAAAATTA
1 TAAAAATTA
8087392 TTAAAAA-TA
1 -TAAAAATTA
* *
8087401 GAAAAAATA
1 TAAAAATTA
8087410 T-AAAATTA
1 TAAAAATTA
*
8087418 CAAAAATTA
1 TAAAAATTA
*
8087427 TATAAAAATA
1 TA-AAAATTA
8087437 TAAAA
1 TAAAA
8087442 GTACTAAAAT
Statistics
Matches: 143, Mismatches: 34, Indels: 35
0.67 0.16 0.17
Matches are distributed among these distances:
8 18 0.13
9 53 0.37
10 54 0.38
11 17 0.12
12 1 0.01
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (9 bp):
TAAAAATTA
Found at i:8087407 original size:19 final size:18
Alignment explanation
Indices: 8087385--8087441 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
8087375 GAAATTTATT
8087385 AAAATTATTAAAAATAGAA
1 AAAATTATTAAAAATA-AA
* *
8087404 AAAA-TA-TAAAATTACA
1 AAAATTATTAAAAATAAA
8087420 AAAATTATATAAAAATATAA
1 AAAATTAT-TAAAAATA-AA
8087440 AA
1 AA
8087442 GTACTAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
16 5 0.17
17 9 0.30
18 2 0.07
19 11 0.37
20 3 0.10
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AAAATTATTAAAAATAAA
Found at i:8087408 original size:29 final size:29
Alignment explanation
Indices: 8087352--8087406 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
8087342 TACACAAAAG
* **
8087352 TATTAAAATTATTTAAAAATTGTGAAATT
1 TATTAAAATTATTTAAAAATAGAAAAATT
8087381 TATTAAAATTA-TTAAAAATAGAAAAA
1 TATTAAAATTATTTAAAAATAGAAAAA
8087407 ATATAAAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 12 0.52
29 11 0.48
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (29 bp):
TATTAAAATTATTTAAAAATAGAAAAATT
Found at i:8087416 original size:36 final size:37
Alignment explanation
Indices: 8087376--8087460 Score: 95
Period size: 35 Copynumber: 2.4 Consensus size: 37
8087366 AAAAATTGTG
8087376 AAATTTATTAAAATTAT-TAAAAATAGAAAAAATA-TA
1 AAATTTATTAAAATTATATAAAAATA-AAAAAATACTA
** * *
8087412 AAA-TTACAAAAATTATATAAAAATATAAAAGTACTA
1 AAATTTATTAAAATTATATAAAAATAAAAAAATACTA
*
8087448 AAATTTTTTAAAA
1 AAATTTATTAAAA
8087461 ATATCAGAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
35 17 0.44
36 16 0.41
37 6 0.15
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (37 bp):
AAATTTATTAAAATTATATAAAAATAAAAAAATACTA
Found at i:8087441 original size:27 final size:27
Alignment explanation
Indices: 8087403--8087464 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
8087393 TAAAAATAGA
*
8087403 AAAAATATAAAATTACAAAAATTATAT
1 AAAAATATAAAAGTACAAAAATTATAT
* * *
8087430 AAAAATATAAAAGTACTAAAATTTTTT
1 AAAAATATAAAAGTACAAAAATTATAT
8087457 AAAAATAT
1 AAAAATAT
8087465 CAGAGATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (27 bp):
AAAAATATAAAAGTACAAAAATTATAT
Found at i:8089265 original size:31 final size:31
Alignment explanation
Indices: 8089225--8089293 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
8089215 ATATTTTATT
* *
8089225 ATTTT-GTCACT-CAAGTTAGATAAATTGTCA
1 ATTTTAGTCACTCCAA-TTAAATAAATTGTAA
* *
8089255 ATTTTAGTCACTCCTATTAAATAAGTTGTAA
1 ATTTTAGTCACTCCAATTAAATAAATTGTAA
8089286 ATTTTAGT
1 ATTTTAGT
8089294 TACTTTACCG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
30 5 0.15
31 26 0.79
32 2 0.06
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.43
Consensus pattern (31 bp):
ATTTTAGTCACTCCAATTAAATAAATTGTAA
Found at i:8090343 original size:26 final size:26
Alignment explanation
Indices: 8090314--8090369 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
8090304 CGCTTTTTTC
* *
8090314 TTTCTAAA-ACTACAGCCTTTGGTAAG
1 TTTCTAAACACT-CAACCTTTGGTAAA
8090340 TTTC-AAACACTCAACCTTTGGTAAA
1 TTTCTAAACACTCAACCTTTGGTAAA
8090365 TTTCT
1 TTTCT
8090370 TCCCTTTATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.30, C:0.21, G:0.11, T:0.38
Consensus pattern (26 bp):
TTTCTAAACACTCAACCTTTGGTAAA
Found at i:8096800 original size:16 final size:17
Alignment explanation
Indices: 8096775--8096811 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
8096765 TATTATTATG
8096775 AAATTAAAAATATA-AA
1 AAATTAAAAATATATAA
*
8096791 AAATTTAAAATATATAA
1 AAATTAAAAATATATAA
8096808 AAAT
1 AAAT
8096812 GTATAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAATTAAAAATATATAA
Found at i:8099322 original size:14 final size:14
Alignment explanation
Indices: 8099305--8099331 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8099295 TAGGATAATT
8099305 TTTAAATTTTATTA
1 TTTAAATTTTATTA
8099319 TTTAAATTTTATT
1 TTTAAATTTTATT
8099332 TTAGCTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TTTAAATTTTATTA
Found at i:8099378 original size:10 final size:10
Alignment explanation
Indices: 8099345--8099370 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8099335 GCTTTTATCT
8099345 TTATCTTTAA
1 TTATCTTTAA
8099355 TTATCTTTAA
1 TTATCTTTAA
8099365 TTATCT
1 TTATCT
8099371 GTATTTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:8101005 original size:21 final size:21
Alignment explanation
Indices: 8100980--8101020 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8100970 CATTGATTTA
8100980 GTAAATTAGTTTATGAAATTC
1 GTAAATTAGTTTATGAAATTC
8101001 GTAAATTAGTTTATGAAATT
1 GTAAATTAGTTTATGAAATT
8101021 AGAATATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (21 bp):
GTAAATTAGTTTATGAAATTC
Found at i:8108759 original size:21 final size:21
Alignment explanation
Indices: 8108735--8108775 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
8108725 CATTGATTTA
8108735 GTAAATTAGTTTATGAAATTC
1 GTAAATTAGTTTATGAAATTC
8108756 GTAAATTAGTTTATGAAATT
1 GTAAATTAGTTTATGAAATT
8108776 AGAATATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (21 bp):
GTAAATTAGTTTATGAAATTC
Found at i:8113170 original size:7 final size:7
Alignment explanation
Indices: 8113146--8113193 Score: 52
Period size: 7 Copynumber: 7.6 Consensus size: 7
8113136 AGGCAACCCA
8113146 ATTT-TT
1 ATTTATT
8113152 ATTTATT
1 ATTTATT
8113159 A-TTATT
1 ATTTATT
8113165 ATTTATT
1 ATTTATT
*
8113172 -TTT-CT
1 ATTTATT
8113177 -TTTATT
1 ATTTATT
8113183 ATTTATT
1 ATTTATT
8113190 ATTT
1 ATTT
8113194 TATTTTTGGG
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
5 4 0.11
6 14 0.39
7 18 0.50
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (7 bp):
ATTTATT
Found at i:8113200 original size:21 final size:21
Alignment explanation
Indices: 8113148--8113200 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
8113138 GCAACCCAAT
8113148 TTTTATTTATTATTATTATTTA
1 TTTTATTT-TTATTATTATTTA
8113170 TTTT-TCTTTTATTATT-TATTA
1 TTTTAT-TTTTATTATTAT-TTA
8113191 TTTTATTTTT
1 TTTTATTTTT
8113201 GGGATATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 1 0.04
21 20 0.71
22 7 0.25
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (21 bp):
TTTTATTTTTATTATTATTTA
Found at i:8114461 original size:99 final size:99
Alignment explanation
Indices: 8114290--8114490 Score: 296
Period size: 99 Copynumber: 2.0 Consensus size: 99
8114280 AATAATTTTT
8114290 TTAGGAATATATTGCGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAA
1 TTAGGAATATATTGCGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAA
*
8114355 AGGTTCAATATGTTCTTAAG-AAAAATATAATAAA
66 AGGTTCAATATATTCTTAAGCAAAAATA-AATAAA
* * * * * * * *
8114389 TTAGGAGTATGTTGGGCTGAGTAACCGGGGTGGGGTGCTTGGTTGTTATTTTTCTTTGCGTCAAA
1 TTAGGAATATATTGCGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAA
*
8114454 AGGTTCAATTTATTCTTAAGCAAAAATAAATAAA
66 AGGTTCAATATATTCTTAAGCAAAAATAAATAAA
8114488 TTA
1 TTA
8114491 ATTAATTAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
99 84 0.92
100 7 0.08
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.34
Consensus pattern (99 bp):
TTAGGAATATATTGCGCTGAGTAACCGGGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAA
AGGTTCAATATATTCTTAAGCAAAAATAAATAAA
Found at i:8114935 original size:17 final size:18
Alignment explanation
Indices: 8114913--8114946 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8114903 TTTTAGGGAC
8114913 TAAATTGAA-GGCAAAAG
1 TAAATTGAAGGGCAAAAG
*
8114930 TAAATTTAAGGGCAAAA
1 TAAATTGAAGGGCAAAA
8114947 AGTGTGAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.06, G:0.21, T:0.21
Consensus pattern (18 bp):
TAAATTGAAGGGCAAAAG
Found at i:8117086 original size:28 final size:28
Alignment explanation
Indices: 8117037--8117096 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
8117027 GAGTTAAGGT
* * *
8117037 TTTTTCGAAATTTACCGGATTAGATTGA
1 TTTTTCAAAATTTACCGAATTAGATTAA
** *
8117065 TTTTTCAAAATTTATTGAATTAGGTTAA
1 TTTTTCAAAATTTACCGAATTAGATTAA
8117093 TTTT
1 TTTT
8117097 GAAGAGGGAA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.07, G:0.13, T:0.50
Consensus pattern (28 bp):
TTTTTCAAAATTTACCGAATTAGATTAA
Found at i:8117672 original size:20 final size:21
Alignment explanation
Indices: 8117638--8117713 Score: 75
Period size: 22 Copynumber: 3.6 Consensus size: 21
8117628 GAACAAAACA
* *
8117638 TGAGAGTGAACTAAGAGA-AT
1 TGAGAATGAATTAAGAGAGAT
8117658 TGAGTAA-GAATTAAGAGAGGAT
1 TGAG-AATGAATTAAGAGA-GAT
*
8117680 TGAGAATGAATTGAGAGAGAGT
1 TGAGAATGAATTAAGAGAGA-T
*
8117702 TGAGAGTGAATT
1 TGAGAATGAATT
8117714 GAAAAAGTGA
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
20 14 0.30
21 5 0.11
22 28 0.60
ACGTcount: A:0.42, C:0.01, G:0.33, T:0.24
Consensus pattern (21 bp):
TGAGAATGAATTAAGAGAGAT
Found at i:8118118 original size:20 final size:21
Alignment explanation
Indices: 8118085--8118126 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
8118075 AAAAAGTTAT
8118085 TTTTATTTAATTTTTAAAATA
1 TTTTATTTAATTTTTAAAATA
* *
8118106 TTTT-TTTATTTTTTATAATA
1 TTTTATTTAATTTTTAAAATA
8118126 T
1 T
8118127 AAAAATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
TTTTATTTAATTTTTAAAATA
Found at i:8123327 original size:20 final size:21
Alignment explanation
Indices: 8123296--8123334 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8123286 AGGAGATTTT
8123296 ATTTGAATTTGATTCTAATCA
1 ATTTGAATTTGATTCTAATCA
*
8123317 ATTTG-ATTTGATTTTAAT
1 ATTTGAATTTGATTCTAAT
8123335 AAAAATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.54
Consensus pattern (21 bp):
ATTTGAATTTGATTCTAATCA
Found at i:8145117 original size:8 final size:8
Alignment explanation
Indices: 8145104--8145163 Score: 52
Period size: 8 Copynumber: 7.1 Consensus size: 8
8145094 TTTTATGAAC
8145104 TTTTATAT
1 TTTTATAT
8145112 TTTTATTGAT
1 TTTTA-T-AT
8145122 TTTT-TACT
1 TTTTATA-T
8145130 TTTTGAATAT
1 TTTT--ATAT
8145140 TTTTATAT
1 TTTTATAT
8145148 TTTTA-AT
1 TTTTATAT
*
8145155 TTATATAT
1 TTTTATAT
8145163 T
1 T
8145164 GATGTGATAT
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
7 7 0.16
8 23 0.52
9 1 0.02
10 11 0.25
11 2 0.05
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.70
Consensus pattern (8 bp):
TTTTATAT
Found at i:8145125 original size:18 final size:17
Alignment explanation
Indices: 8145104--8145154 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
8145094 TTTTATGAAC
*
8145104 TTTTATATTTTTATTGAT
1 TTTTATATTTTTAAT-AT
8145122 TTTT-TACTTTTTGAATAT
1 TTTTATA-TTTTT-AATAT
8145140 TTTTATATTTTTAAT
1 TTTTATATTTTTAAT
8145155 TTATATATTG
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
17 5 0.17
18 20 0.69
19 4 0.14
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.71
Consensus pattern (17 bp):
TTTTATATTTTTAATAT
Found at i:8147550 original size:20 final size:20
Alignment explanation
Indices: 8147525--8147567 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
8147515 ATCATTACTC
8147525 TTATCCTGAATTTCAGGATT
1 TTATCCTGAATTTCAGGATT
*
8147545 TTATCCTGAATTTCAGTATT
1 TTATCCTGAATTTCAGGATT
8147565 TTA
1 TTA
8147568 ATTTGGATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.49
Consensus pattern (20 bp):
TTATCCTGAATTTCAGGATT
Found at i:8149357 original size:3 final size:3
Alignment explanation
Indices: 8149349--8149396 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
8149339 ATTCCCACTC
* * * *
8149349 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8149397 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:8149397 original size:18 final size:18
Alignment explanation
Indices: 8149350--8149398 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
8149340 TTCCCACTCA
*
8149350 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
8149368 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
8149386 TAATATTAATACT
1 TAATAATAATACT
8149399 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:8149398 original size:12 final size:12
Alignment explanation
Indices: 8149349--8149396 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
8149339 ATTCCCACTC
*
8149349 ATAATAATAATA
1 ATAATACTAATA
8149361 ATAATACTAATA
1 ATAATACTAATA
8149373 ATAATACTAATA
1 ATAATACTAATA
* *
8149385 CTAATATTAATA
1 ATAATACTAATA
8149397 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:8150466 original size:21 final size:21
Alignment explanation
Indices: 8150442--8150484 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
8150432 AATAATAACT
8150442 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
8150463 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
8150484 A
1 A
8150485 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:8158241 original size:12 final size:12
Alignment explanation
Indices: 8158224--8158249 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8158214 TATTTGTTTA
8158224 TTGTTTTTATAT
1 TTGTTTTTATAT
8158236 TTGTTTTTATAT
1 TTGTTTTTATAT
8158248 TT
1 TT
8158250 TTAAATGTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.00, G:0.08, T:0.77
Consensus pattern (12 bp):
TTGTTTTTATAT
Found at i:8158250 original size:19 final size:18
Alignment explanation
Indices: 8158210--8158252 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
8158200 TTTGTCTCAC
*
8158210 TTTTTATTTGTTTATTGT
1 TTTTTATTTGTTTATTAT
8158228 TTTTATATTTGTTT-TTAT
1 TTTT-TATTTGTTTATTAT
8158246 ATTTTTA
1 -TTTTTA
8158253 AATGTATTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 9 0.41
19 13 0.59
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.77
Consensus pattern (18 bp):
TTTTTATTTGTTTATTAT
Found at i:8158291 original size:24 final size:26
Alignment explanation
Indices: 8158242--8158291 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
8158232 ATATTTGTTT
8158242 TTATATTTTTAAATGTATTTTATTTA
1 TTATATTTTTAAATGTATTTTATTTA
*
8158268 TTATA-TTTTAAAT-TTTTTTATTTA
1 TTATATTTTTAAATGTATTTTATTTA
8158292 ATGAAATAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 10 0.43
25 8 0.35
26 5 0.22
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (26 bp):
TTATATTTTTAAATGTATTTTATTTA
Found at i:8164981 original size:40 final size:40
Alignment explanation
Indices: 8164921--8165006 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
8164911 ACTAATTAGC
*
8164921 ACAAATAAACCCAACTAAATCTCCGTTAATTTGATTCAAT
1 ACAAATAAACCCAACTAAATCTCCGTTAATTCGATTCAAT
* * *
8164961 ACAAGTAAACCTAACTAAATCTCTGTTAATTCGATTCAAT
1 ACAAATAAACCCAACTAAATCTCCGTTAATTCGATTCAAT
8165001 ACAAAT
1 ACAAAT
8165007 GAAAAACCAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (40 bp):
ACAAATAAACCCAACTAAATCTCCGTTAATTCGATTCAAT
Found at i:8170305 original size:18 final size:18
Alignment explanation
Indices: 8170282--8170357 Score: 116
Period size: 18 Copynumber: 4.2 Consensus size: 18
8170272 CCCAACTACT
*
8170282 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
8170300 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
8170318 GTATACGTAAATAGTACC
1 GTATACGTGAATAGTACC
*
8170336 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
8170354 GTAT
1 GTAT
8170358 TCCCCAAGTA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 52 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:8170334 original size:36 final size:36
Alignment explanation
Indices: 8170282--8170357 Score: 134
Period size: 36 Copynumber: 2.1 Consensus size: 36
8170272 CCCAACTACT
*
8170282 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTAAACAGTACCGTATACGTGAATAGTGCC
*
8170318 GTATACGTAAATAGTACCGTATACGTGAATAGTGCC
1 GTATACGTAAACAGTACCGTATACGTGAATAGTGCC
8170354 GTAT
1 GTAT
8170358 TCCCCAAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (36 bp):
GTATACGTAAACAGTACCGTATACGTGAATAGTGCC
Found at i:8172113 original size:16 final size:16
Alignment explanation
Indices: 8172092--8172133 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
8172082 ATAATTCACC
* * *
8172092 AAAATATATATATTTT
1 AAAATATATACAATTA
8172108 AAAATATATACAATTA
1 AAAATATATACAATTA
8172124 AAAATATATA
1 AAAATATATA
8172134 AAAAGCTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAATATATACAATTA
Found at i:8180736 original size:46 final size:46
Alignment explanation
Indices: 8180684--8180957 Score: 361
Period size: 46 Copynumber: 6.0 Consensus size: 46
8180674 AGTGTGCTCT
*
8180684 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
8180730 CTGATATGAAATGTGTAATACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8180776 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** ** *
8180822 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * *
8180868 GTGACATGAAATATGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
8180914 ATGACA-GAAAATGAGTAAGACCATAGTTGATAGACACTATGGCA
1 CTGACATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
8180958 TCATATCAAA
Statistics
Matches: 202, Mismatches: 25, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
45 1 0.00
46 201 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGACATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8183091 original size:50 final size:51
Alignment explanation
Indices: 8183014--8183136 Score: 185
Period size: 50 Copynumber: 2.4 Consensus size: 51
8183004 GACCATGGCA
* *
8183014 ACAAGTGATAAGTAATAGCTTCGGCTACACTTAACTGATCAAGGACAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTGATCAAGGACAAATG
* *
8183065 A-AAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAATGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTGATCAAGGACAAATG
* *
8183115 ACAAGTGAAAAGTGGTAGCTTC
1 ACAAGTGATAAGTGATAGCTTC
8183137 AACTACCTGA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
50 46 0.71
51 19 0.29
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.25
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTAACTGATCAAGGACAAATG
Found at i:8183204 original size:31 final size:31
Alignment explanation
Indices: 8183118--8183267 Score: 176
Period size: 31 Copynumber: 4.8 Consensus size: 31
8183108 ACAAATGACA
**
8183118 AGTGAAAAGTGGTAGCTTCAACTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8183149 AGTGAAAAGTGGTAGCTTCTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
8183180 AGTGAAAAGTGGTAGCTCCGGCTACCTGAT-
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* * * *
8183210 AGATAAAAAAATGGTAACTCCGGCTACCTGATC
1 AG-T-GAAAAGTGGTAGCTTCGGCTACCTGATC
* * *
8183243 AGCGAATAGTTGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
8183268 AAGTGACAAG
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
30 2 0.02
31 74 0.73
32 24 0.24
33 2 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:8187170 original size:46 final size:46
Alignment explanation
Indices: 8187118--8187437 Score: 444
Period size: 46 Copynumber: 7.0 Consensus size: 46
8187108 AGTGTGCTCT
8187118 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
8187164 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8187210 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCAAGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
8187256 CTGTTATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *** ** *
8187302 ATGACGGGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
8187348 GTGACATGAAATATGTAAGACCATGGTTGAAAAATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
8187394 ATGACA-GAAAATGAGTAAGACCATAGTTGATAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
8187438 TCATATCAAA
Statistics
Matches: 246, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
45 1 0.00
46 245 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:8188166 original size:21 final size:21
Alignment explanation
Indices: 8188140--8188190 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
8188130 ACTCATATGA
*
8188140 GTTTCAGTTAACCCTTTTGTG
1 GTTTCAGTTAACCCTTTTGGG
8188161 GTTTCAGTTAACCCTTTTGGG
1 GTTTCAGTTAACCCTTTTGGG
8188182 GTTTCAGTT
1 GTTTCAGTT
8188191 CAGCTCTGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.14, C:0.18, G:0.22, T:0.47
Consensus pattern (21 bp):
GTTTCAGTTAACCCTTTTGGG
Found at i:8188249 original size:39 final size:39
Alignment explanation
Indices: 8188203--8188281 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
8188193 GCTCTGATGA
8188203 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
8188242 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
8188281 G
1 G
8188282 TTTTAGCTTG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.15, C:0.25, G:0.22, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTATGT
Found at i:8206658 original size:21 final size:20
Alignment explanation
Indices: 8206634--8206674 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
8206624 GATTTTAGGG
8206634 TTTTATTTTCTTTTCCATTTC
1 TTTTATTTTCTTTT-CATTTC
*
8206655 TTTTCTTTTCTTTTCATTTC
1 TTTTATTTTCTTTTCATTTC
8206675 GAATTTAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTATTTTCTTTTCATTTC
Found at i:8206664 original size:10 final size:10
Alignment explanation
Indices: 8206640--8206674 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
8206630 AGGGTTTTAT
8206640 TTTCTTTTCCA
1 TTTCTTTT-CA
*
8206651 TTTCTTTTCT
1 TTTCTTTTCA
8206661 TTTCTTTTCA
1 TTTCTTTTCA
8206671 TTTC
1 TTTC
8206675 GAATTTAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 14 0.64
11 8 0.36
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (10 bp):
TTTCTTTTCA
Found at i:8212697 original size:26 final size:26
Alignment explanation
Indices: 8212654--8212703 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
8212644 TATCATCCTT
*
8212654 ATTTTACTCTCAGCAAAAATTTGATG
1 ATTTTACCCTCAGCAAAAATTTGATG
* * *
8212680 ATTTTACCCTTAGTAAAATTTTGA
1 ATTTTACCCTCAGCAAAAATTTGA
8212704 CGATATTGCC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTCAGCAAAAATTTGATG
Found at i:8215972 original size:43 final size:43
Alignment explanation
Indices: 8215906--8216077 Score: 192
Period size: 43 Copynumber: 4.0 Consensus size: 43
8215896 AGCTCGTACA
*
8215906 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
**
8215949 ATGCC-ACTGTCCCAGACAG-GGTCTTACACAAAATCAAATA-CG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAATATCG
* * * *
8215991 ATGCCAATGTCCCAGATGTAGTCTTACACGTAAATCATAA-GTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
*
8216035 ATGCCAACGTCCCAGACGTGGTCTTACACGATAA-CACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG-TAATCAAATATCG
8216078 GATCCTATGT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 27 0.25
43 43 0.41
44 34 0.32
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:8216051 original size:86 final size:85
Alignment explanation
Indices: 8215906--8216063 Score: 214
Period size: 86 Copynumber: 1.8 Consensus size: 85
8215896 AGCTCGTACA
* *
8215906 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAGACGTAGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGAC-GTGG
8215970 TCTTACACAAAATCAAATACG
65 TCTTACACAAAATCAAATACG
* * *
8215991 ATGCCAATGTCCCAGATGTAGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGACGT
1 ATGCCAACGTCCCAGACGTAGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCAGACGT
8216054 GGTCTTACAC
63 GGTCTTACAC
8216064 GATAACACAT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
85 28 0.44
86 32 0.50
87 4 0.06
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACGTAGTCTTACACGTAATCAAATATCGATGCCACTGTCCCAGACGTGGT
CTTACACAAAATCAAATACG
Found at i:8219028 original size:28 final size:28
Alignment explanation
Indices: 8218987--8219040 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
8218977 ATGTCGTTGA
* *
8218987 ATACTCAATGTCTCGCACACTAAGTGCC
1 ATACTCAATATCTCACACACTAAGTGCC
*
8219015 ATACTCGATATCTCACACACTAAGTG
1 ATACTCAATATCTCACACACTAAGTG
8219041 TCGTACATAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (28 bp):
ATACTCAATATCTCACACACTAAGTGCC
Found at i:8219091 original size:40 final size:40
Alignment explanation
Indices: 8219027--8219123 Score: 131
Period size: 40 Copynumber: 2.4 Consensus size: 40
8219017 ACTCGATATC
* *
8219027 TCACACACTAAGTGTCGTACATAGCCGAAGCTATCTCAAA
1 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * **
8219067 TCACACACTAAGTGCCATATATAGCCGAAGCTATGTCGTA
1 TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
*
8219107 TCGCACACTAAGTGCCA
1 TCACACACTAAGTGCCA
8219124 CAAATAACCG
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (40 bp):
TCACACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:8230922 original size:13 final size:13
Alignment explanation
Indices: 8230890--8230914 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8230880 TGGACTTGTA
8230890 AATATTAAATAAT
1 AATATTAAATAAT
8230903 AATATTAAATAA
1 AATATTAAATAA
8230915 CTTTATTATC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AATATTAAATAAT
Found at i:8231780 original size:21 final size:21
Alignment explanation
Indices: 8231756--8231797 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8231746 TACACGAGTT
8231756 AGCTAAATTGAGTTAACATGA
1 AGCTAAATTGAGTTAACATGA
8231777 AGCTAAATTGAGTTAACATGA
1 AGCTAAATTGAGTTAACATGA
8231798 TCTCAAAGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AGCTAAATTGAGTTAACATGA
Found at i:8241419 original size:300 final size:299
Alignment explanation
Indices: 8240877--8241450 Score: 796
Period size: 300 Copynumber: 1.9 Consensus size: 299
8240867 ACCTTTAGGG
* *
8240877 TATTGACTATGTTGGAACCACCTTGTTGACCAATGCTATGACTTTCTCATGCAGTTTGAGTTCGT
1 TATTGACTATGTTGGAACCACCTGGTTGACCAATGCCATGACTTTCTCATGCAGTTTGAGTTCGT
* * * * * *
8240942 ACAGTTGAAACATAGAAATTACTGCCAAAAGATAGTATTTTCTTTTGCATTTAGAGCCTTCTTCG
66 ACAGTTGAAACATAGAAAGTACTACCAAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTCA
** * * *
8241007 TGCTCATGAATTTCTCTATACAAATAAGAATGTATAAACCAATCTTGTCATCGCACTGTATGACA
131 TGCTCACAAATTTCTATATACAAATAAGAATGTATAAACCAAGCTTGT-ATCGCACTGTAAGACA
* * * *
8241072 ATTATTGTTTTTCTATTTGAAGTTGTGTTTCAATAGTCTTTAACTGTTTATTCCAT-AGGTGTTC
195 ATTATTGTTTTCCTAGTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCC-TCAGGTGTTC
8241136 TACCACTGCCAACATCACAGCATTGTACCGCATTTATATTA
259 TACCACTGCCAACATCACAGCATTGTACCGCATTTATATTA
* *
8241177 TATTGACTATGTTGGAACCACCTGGTT-AGCCAATGCCATGACTTTTTCATGCAGTTTGTGTTCG
1 TATTGACTATGTTGGAACCACCTGGTTGA-CCAATGCCATGACTTTCTCATGCAGTTTGAGTTCG
* * *
8241241 TACAGTTGAAACTTAGAAAGTGCTACCCAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTC
65 TACAGTTGAAACATAGAAAGTACTACCAAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTC
* * *
8241306 ATGCTCACAAATTTCTATATACAAATTAGAATGTTTAACCCAAGCTTGT-TGCGGCACTGTACAG
130 ATGCTCACAAATTTCTATATACAAATAAGAATGTATAAACCAAGCTTGTAT-C-GCACTGTA-AG
* * *
8241370 -CAATTATTGTTTTCCTCGTTGAAATTGTGTCTCAGTAGTCTTTAACTGTTTATTCCTCTGGTGT
192 ACAATTATTGTTTTCCTAGTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCCTCAGGTGT
**
8241434 TCTACTGCTGCCAACAT
257 TCTACCACTGCCAACAT
8241451 TGCAGCACTG
Statistics
Matches: 239, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
298 1 0.00
299 3 0.01
300 234 0.98
301 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.38
Consensus pattern (299 bp):
TATTGACTATGTTGGAACCACCTGGTTGACCAATGCCATGACTTTCTCATGCAGTTTGAGTTCGT
ACAGTTGAAACATAGAAAGTACTACCAAAAGATAGTATTTTCTCTTCCATTTAAAGCCTTCTTCA
TGCTCACAAATTTCTATATACAAATAAGAATGTATAAACCAAGCTTGTATCGCACTGTAAGACAA
TTATTGTTTTCCTAGTTGAAATTGTGTCTCAATAGTCTTTAACTGTTTATTCCTCAGGTGTTCTA
CCACTGCCAACATCACAGCATTGTACCGCATTTATATTA
Found at i:8256522 original size:29 final size:32
Alignment explanation
Indices: 8256438--8256503 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
8256428 AATTTTGAAA
8256438 TATGAAAAGTAAAGAGACTAAATTACTAGAAT
1 TATGAAAAGTAAAGAGACTAAATTACTAGAAT
8256470 TATGAAAAGTAAAGAGACTAAATTACTAGAAT
1 TATGAAAAGTAAAGAGACTAAATTACTAGAAT
8256502 TA
1 TA
8256504 CAAGTATAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.53, C:0.06, G:0.15, T:0.26
Consensus pattern (32 bp):
TATGAAAAGTAAAGAGACTAAATTACTAGAAT
Found at i:8263322 original size:25 final size:25
Alignment explanation
Indices: 8263294--8263343 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
8263284 TGTATGGAAA
*
8263294 GAAGGAATATTTCATTAATTATGAT
1 GAAGGAATATTTCATCAATTATGAT
*
8263319 GAAGGAATATTTTATCAATTATGAT
1 GAAGGAATATTTCATCAATTATGAT
8263344 AAAAATTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (25 bp):
GAAGGAATATTTCATCAATTATGAT
Found at i:8266237 original size:13 final size:13
Alignment explanation
Indices: 8266221--8266245 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8266211 AAATGGATGC
8266221 AAAAATAATACAG
1 AAAAATAATACAG
8266234 AAAAATAATACA
1 AAAAATAATACA
8266246 TGGGAATTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATAATACAG
Done.