Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 30 of 259
Found at i:8644622 original size:30 final size:30
Alignment explanation
Indices: 8644576--8644699 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
8644566 TTTTATTATG
*
8644576 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
8644607 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
8644637 CTAATATTTGATACTCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
8644667 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
8644697 CCA
1 CCA
8644700 TAAATATGGA
Statistics
Matches: 86, Mismatches: 7, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
30 79 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.45
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:8644631 original size:15 final size:15
Alignment explanation
Indices: 8644586--8644693 Score: 60
Period size: 15 Copynumber: 7.2 Consensus size: 15
8644576 CCAATATCTC
8644586 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
8644601 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
8644616 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
8644631 GACTTTCTA-ATATTT
1 GA-TACCCATATCTTT
*
8644646 GATACTCATATCTTT
1 GATACCCATATCTTT
** * *
8644661 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
8644676 GATACCCATATCTTT
1 GATACCCATATCTTT
8644691 GAT
1 GAT
8644694 TTTCCATAAA
Statistics
Matches: 63, Mismatches: 24, Indels: 12
0.64 0.24 0.12
Matches are distributed among these distances:
14 10 0.16
15 43 0.68
16 10 0.16
ACGTcount: A:0.26, C:0.20, G:0.07, T:0.46
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:8649301 original size:30 final size:30
Alignment explanation
Indices: 8649255--8649378 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
8649245 TTTTATTATG
*
8649255 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
8649286 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
8649316 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
8649346 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
8649376 CCA
1 CCA
8649379 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:8649310 original size:15 final size:15
Alignment explanation
Indices: 8649265--8649372 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
8649255 CCAATATCTC
8649265 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
8649280 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
8649295 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
8649310 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
8649325 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
8649340 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
8649355 GATACCCATATCTTT
1 GATACCCATATCTTT
8649370 GAT
1 GAT
8649373 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:8655352 original size:18 final size:18
Alignment explanation
Indices: 8655304--8655352 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
8655294 TATTTGTGTT
8655304 ATAT-ATATATATATATG
1 ATATCATATATATATATG
* * *
8655321 ATATGATGTGTATATATG
1 ATATCATATATATATATG
*
8655339 CTATCATATATATA
1 ATATCATATATATA
8655353 ATAAAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (18 bp):
ATATCATATATATATATG
Found at i:8655866 original size:12 final size:12
Alignment explanation
Indices: 8655849--8655882 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
8655839 TGGCCCGCCC
8655849 ATATTAATTTTT
1 ATATTAATTTTT
*
8655861 ATATTATTTTTT
1 ATATTAATTTTT
8655873 ATA-TAATTTT
1 ATATTAATTTT
8655883 AAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:8661966 original size:25 final size:25
Alignment explanation
Indices: 8661932--8662013 Score: 96
Period size: 25 Copynumber: 3.3 Consensus size: 25
8661922 CTAATATGTA
8661932 TATATTATGTAAATATTTTTAATAC
1 TATATTATGTAAATATTTTTAATAC
* *
8661957 TATATTATGTATATATTTTT-ACA-
1 TATATTATGTAAATATTTTTAATAC
* * *
8661980 TGTATTATGTACATATTTTCAATAAC
1 TATATTATGTAAATATTTTTAAT-AC
8662006 TATATTAT
1 TATATTAT
8662014 ATGTATATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
23 17 0.36
24 3 0.06
25 20 0.43
26 7 0.15
ACGTcount: A:0.37, C:0.06, G:0.05, T:0.52
Consensus pattern (25 bp):
TATATTATGTAAATATTTTTAATAC
Found at i:8662083 original size:21 final size:23
Alignment explanation
Indices: 8662048--8662089 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
8662038 TATAATATTA
*
8662048 TAATATTATTATGTATTTATTCT
1 TAATATTATTATGTATATATTCT
8662071 TAATA-TA-TATGTATATATT
1 TAATATTATTATGTATATATT
8662090 TATGTAGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 2 0.11
23 5 0.28
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (23 bp):
TAATATTATTATGTATATATTCT
Found at i:8662094 original size:33 final size:31
Alignment explanation
Indices: 8662006--8662095 Score: 87
Period size: 33 Copynumber: 2.8 Consensus size: 31
8661996 TTTCAATAAC
8662006 TATATTATATGTATATATTTTATGTACATACT
1 TATA-TATATGTATATATTTTATGTACATACT
* *
8662038 TATA-ATAT-TATAATATTATTATGTATTTATTCT
1 TATATATATGTAT-ATATT-TTATGTA--CATACT
8662071 TAATATATATGTATATA-TTTATGTA
1 T-ATATATATGTATATATTTTATGTA
8662096 GTATTATTAA
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
29 3 0.06
30 9 0.18
31 7 0.14
32 4 0.08
33 12 0.24
34 4 0.08
35 7 0.14
36 3 0.06
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (31 bp):
TATATATATGTATATATTTTATGTACATACT
Found at i:8662186 original size:24 final size:24
Alignment explanation
Indices: 8662143--8662205 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
8662133 TTCTAATATG
*
8662143 TATATACTATGTA-A-ATATTTTAA
1 TATATATTATGTATACAT-TTTTAA
*
8662166 TACTATATTATGTATACATTTTTTA
1 TA-TATATTATGTATACATTTTTAA
*
8662191 TATATATTACGTATA
1 TATATATTATGTATA
8662206 TATATCTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 2 0.06
24 22 0.65
25 8 0.24
26 2 0.06
ACGTcount: A:0.38, C:0.06, G:0.05, T:0.51
Consensus pattern (24 bp):
TATATATTATGTATACATTTTTAA
Found at i:8662277 original size:13 final size:13
Alignment explanation
Indices: 8662169--8662283 Score: 60
Period size: 13 Copynumber: 8.9 Consensus size: 13
8662159 ATTTTAATAC
*
8662169 TATATTATGTATA
1 TATATTATTTATA
*
8662182 CAT-TT-TTTATA
1 TATATTATTTATA
**
8662193 TATATTACGTATA
1 TATATTATTTATA
*
8662206 TATATCTTTTTAATA
1 TATAT-TATTT-ATA
*
8662221 TTGTATT-TTTATA
1 -TATATTATTTATA
* *
8662234 TATGTTATGTATA
1 TATATTATTTATA
* *
8662247 TAT-CT-TTAATA
1 TATATTATTTATA
8662258 CTATATTATTTATA
1 -TATATTATTTATA
*
8662272 TATATTTTTTAT
1 TATATTATTTAT
8662284 TTTTCATATT
Statistics
Matches: 75, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
11 11 0.15
12 12 0.16
13 34 0.45
14 10 0.13
15 4 0.05
16 4 0.05
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.59
Consensus pattern (13 bp):
TATATTATTTATA
Found at i:8662449 original size:26 final size:27
Alignment explanation
Indices: 8662406--8662458 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
8662396 TCCTAGTATA
*
8662406 TATACTATGTATACATTTTTTAAATAC
1 TATACTATATATACATTTTTTAAATAC
*
8662433 TATAC-ATATATATATTTTTTAAATAC
1 TATACTATATATACATTTTTTAAATAC
8662459 CGTATTATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (27 bp):
TATACTATATATACATTTTTTAAATAC
Found at i:8662514 original size:12 final size:12
Alignment explanation
Indices: 8662499--8662610 Score: 51
Period size: 12 Copynumber: 9.3 Consensus size: 12
8662489 TTTTTACCCC
8662499 TATTATATTTAT
1 TATTATATTTAT
8662511 TATTA-A--TAT
1 TATTATATTTAT
*
8662520 TAGTATATATT-T
1 TATTATAT-TTAT
*
8662532 TATTATACGTGTA-
1 TATTATA--TTTAT
8662545 TATATATACTTT-T
1 TAT-TATA-TTTAT
8662558 TATATATAGTATTAT
1 TAT-TATA-T-TTAT
*
8662573 T-TT-TATATAT
1 TATTATATTTAT
*
8662583 CATTATATTTAT
1 TATTATATTTAT
*
8662595 TATTATACTTAT
1 TATTATATTTAT
8662607 TATT
1 TATT
8662611 TTCACTATTG
Statistics
Matches: 76, Mismatches: 11, Indels: 26
0.67 0.10 0.23
Matches are distributed among these distances:
9 7 0.09
10 4 0.05
11 4 0.05
12 34 0.45
13 17 0.22
14 8 0.11
15 2 0.03
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (12 bp):
TATTATATTTAT
Found at i:8662577 original size:18 final size:18
Alignment explanation
Indices: 8662554--8662612 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 18
8662544 ATATATATAC
*
8662554 TTTTTATATATAGTATTA
1 TTTTTATATATATTATTA
8662572 TTTTTATATATCATTA-TA
1 TTTTTATATAT-ATTATTA
8662590 TTTATTAT-TATACTTATTA
1 TTT-TTATATATA-TTATTA
8662609 TTTT
1 TTTT
8662613 CACTATTGTT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
17 1 0.03
18 23 0.64
19 12 0.33
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTATATATATTATTA
Found at i:8662846 original size:29 final size:29
Alignment explanation
Indices: 8662806--8662866 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 29
8662796 TATATTGTTA
* *
8662806 TTTCTCTATTATCGTTATAAATACATTATT
1 TTTCTCTATTATAGTAAT-AATACATTATT
*
8662836 TTTCT-TATTATAGTAATAGTACATTATT
1 TTTCTCTATTATAGTAATAATACATTATT
8662864 TTT
1 TTT
8662867 ATTTTCTTGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 13 0.46
29 10 0.36
30 5 0.18
ACGTcount: A:0.30, C:0.10, G:0.05, T:0.56
Consensus pattern (29 bp):
TTTCTCTATTATAGTAATAATACATTATT
Found at i:8662890 original size:15 final size:15
Alignment explanation
Indices: 8662866--8662906 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
8662856 ACATTATTTT
8662866 TATT-TTCTTGTAAA
1 TATTGTTCTTGTAAA
8662880 TATTGTTCTTGTAAA
1 TATTGTTCTTGTAAA
*
8662895 TATTGTTATTGT
1 TATTGTTCTTGT
8662907 TGTTTTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 4 0.16
15 21 0.84
ACGTcount: A:0.24, C:0.05, G:0.12, T:0.59
Consensus pattern (15 bp):
TATTGTTCTTGTAAA
Found at i:8672526 original size:21 final size:21
Alignment explanation
Indices: 8672500--8672540 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8672490 ATCTGCTCAA
* *
8672500 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
8672521 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
8672541 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:8680413 original size:21 final size:21
Alignment explanation
Indices: 8680389--8680441 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
8680379 CATTGTTTCT
*
8680389 AATCTCACTGCTACAGTATCC
1 AATCTCACTGCTACAGTAACC
* *
8680410 AATCTCACCGCTACAGTAACT
1 AATCTCACTGCTACAGTAACC
8680431 AATCTCACTGC
1 AATCTCACTGC
8680442 CACCGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.26
Consensus pattern (21 bp):
AATCTCACTGCTACAGTAACC
Found at i:8680708 original size:24 final size:23
Alignment explanation
Indices: 8680664--8680709 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
8680654 AAATAGAGAG
* *
8680664 AAAACAATAAGAAAATAATATTA
1 AAAACAAAAAGAAAAAAATATTA
8680687 AAAACAAAAAGAAAAAACATATT
1 AAAACAAAAAGAAAAAA-ATATT
8680710 TTTTTGTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.72, C:0.07, G:0.04, T:0.17
Consensus pattern (23 bp):
AAAACAAAAAGAAAAAAATATTA
Found at i:8692647 original size:43 final size:43
Alignment explanation
Indices: 8692586--8692673 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
8692576 TGCAAAAAAG
8692586 TAAAACCATTCAAACACCAATAAAATTCCCAAAGTTCAATAGT
1 TAAAACCATTCAAACACCAATAAAATTCCCAAAGTTCAATAGT
8692629 TAAAACCATTCAAACACCAATAAAATTCCCAAAGTTCAATAGT
1 TAAAACCATTCAAACACCAATAAAATTCCCAAAGTTCAATAGT
8692672 TA
1 TA
8692674 TAGATCATTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.49, C:0.23, G:0.05, T:0.24
Consensus pattern (43 bp):
TAAAACCATTCAAACACCAATAAAATTCCCAAAGTTCAATAGT
Found at i:8692739 original size:30 final size:30
Alignment explanation
Indices: 8692703--8692763 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
8692693 AACTAAAAGT
8692703 ATGTAACAACAAGGTAAAAATAACAAAATA
1 ATGTAACAACAAGGTAAAAATAACAAAATA
8692733 ATGTAACAACAAGGTAAAAATAACAAAATA
1 ATGTAACAACAAGGTAAAAATAACAAAATA
8692763 A
1 A
8692764 CTCTCATTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.64, C:0.10, G:0.10, T:0.16
Consensus pattern (30 bp):
ATGTAACAACAAGGTAAAAATAACAAAATA
Found at i:8695984 original size:3 final size:3
Alignment explanation
Indices: 8695972--8696009 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
8695962 GACACTTGAC
8695972 TCT T-T TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
8696010 CCTCCTCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:8697977 original size:16 final size:16
Alignment explanation
Indices: 8697956--8697986 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8697946 AATTAATTTA
8697956 AATTAAATAATTTTCC
1 AATTAAATAATTTTCC
*
8697972 AATTAAATAGTTTTC
1 AATTAAATAATTTTC
8697987 TCAACCGAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.10, G:0.03, T:0.45
Consensus pattern (16 bp):
AATTAAATAATTTTCC
Found at i:8704949 original size:14 final size:14
Alignment explanation
Indices: 8704930--8704959 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8704920 GTTGCGTTCG
8704930 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
8704944 TAGTTAAATTAGAT
1 TAGTTAAATTAGAT
8704958 TA
1 TA
8704960 AAAACAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TAGTTAAATTAGAT
Found at i:8709932 original size:96 final size:95
Alignment explanation
Indices: 8709767--8710132 Score: 326
Period size: 96 Copynumber: 3.8 Consensus size: 95
8709757 GTGAATTGCC
* * * *
8709767 GATGCCATG-CTCCAAACATGGTCTTACACTGGATCACATGTCAAGGCCGATGCCATGTCCCAGA
1 GATGCCATGTC-CCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGA
* *
8709831 TATGGTCTTACACTAGCTCTCGTCTTAATGTT
65 CATGGTCTTACACTAGCTCTC-TCTAAATGTT
* * * *
8709863 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAAT-ATGGCCGATGCCATATCGCAGA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTC-ATATCATGGCCGATGCCATGTCCCAGA
* * * * * * *
8709927 CATGGTTTTACACTAGCGCACATATCAATATA
65 CATGGTCTTACACTAGCTCTC-TCTAAATGTT
* * * * * * * *
8709959 GACGCCATGTCCCAGACATGGTCTTACACTGGCTTTCAT-TACATTGCCGATGTCATGTTCTAAA
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATAT-CATGGCCGATGCCATGTCCCAGA
* * * *
8710023 CATGGTCTTACACTGGTTCTCAC-AACATCGCT
65 CATGGTCTTACACTAGCTCTCTCTAA-AT-GTT
* * * * **
8710055 GATTCCATCTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCAACACCATGTCCCAGAC
1 GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGAC
8710120 ATGGTCTTACACT
66 ATGGTCTTACACT
8710133 GGCACACATA
Statistics
Matches: 211, Mismatches: 52, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
94 2 0.01
95 3 0.01
96 202 0.96
97 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
GATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGAC
ATGGTCTTACACTAGCTCTCTCTAAATGTT
Found at i:8710026 original size:144 final size:142
Alignment explanation
Indices: 8709764--8710135 Score: 340
Period size: 144 Copynumber: 2.6 Consensus size: 142
8709754 AGGGTGAATT
* ** * * * * *
8709764 GCCGATGCCATGC-TCCAAACATGGTCTTACACTGGATCACATGTCAAGGCCGATGCCATGTCCC
1 GCCGATGCCAT-CATCCAAACATGGTCTTACACTAGCGCACATATC-ATGACAACGCCATGTCCC
* * ** *
8709828 AGATATGGTCTTACACTAGCTCTCGTCTTAATGTTGATGCCATGTCCCAGACATGGTCTTACACT
64 AGACATGGTCTTACACTGGCTCTC-TCTTAATGCCGATGCCATGTCCCAAACATGGTCTTACACT
* *
8709893 GGCTCTCAAAATATG
128 GGCTCTCAAAACATC
* * *
8709908 GCCGATGCCAT-ATCGCAGACATGGTTTTACACTAGCGCACATATCAAT-ATAGACGCCATGTCC
1 GCCGATGCCATCATC-CAAACATGGTCTTACACTAGCGCACATATC-ATGACA-ACGCCATGTCC
* * *
8709971 CAGACATGGTCTTACACTGGCT-T-TCATTACATTGCCGATGTCATGTTCTAAACATGGTCTTAC
63 CAGACATGGTCTTACACTGGCTCTCTC-TTA-A-TGCCGATGCCATGTCCCAAACATGGTCTTAC
* *
8710034 ACTGGTTCTCACAACATC
125 ACTGGCTCTCAAAACATC
* * * * * * * *
8710052 GCTGATTCCATCTTCCAAACATGGTCTTACACTGGCTCTCATATCATGGCCAACACCATGTCCCA
1 GCCGATGCCATCATCCAAACATGGTCTTACACTAGCGCACATATCAT-GACAACGCCATGTCCCA
8710117 GACATGGTCTTACACTGGC
65 GACATGGTCTTACACTGGC
8710136 ACACATATCA
Statistics
Matches: 185, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
141 2 0.01
142 3 0.02
143 6 0.03
144 171 0.92
145 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (142 bp):
GCCGATGCCATCATCCAAACATGGTCTTACACTAGCGCACATATCATGACAACGCCATGTCCCAG
ACATGGTCTTACACTGGCTCTCTCTTAATGCCGATGCCATGTCCCAAACATGGTCTTACACTGGC
TCTCAAAACATC
Found at i:8710143 original size:48 final size:48
Alignment explanation
Indices: 8709764--8710145 Score: 283
Period size: 48 Copynumber: 8.0 Consensus size: 48
8709754 AGGGTGAATT
* * * *
8709764 GCCGATGCCATG-CTCCAAACATGGTCTTACACTGGATCACATGTCAAG
1 GCCGATGCCATGTC-CCAGACATGGTCTTACACTGGCTCACATATCATG
* * * * * *
8709812 GCCGATGCCATGTCCCAGATATGGTCTTACACTAGCTCTCGTCTTAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATCATG
** * *
8709860 GTTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAAAT-ATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAC-ATATCATG
* * * * *
8709908 GCCGATGCCATATCGCAGACATGGTTTTACACTAGCGCACATATCAAT-
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATC-ATG
*** * ** *
8709956 ATAGACGCCATGTCCCAGACATGGTCTTACACTGGCTTTCAT-TACATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-CATG
* * * * *
8710004 GCCGATGTCATGTTCTAAACATGGTCTTACACTGGTTCTCACA-A-CATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCACATATCATG
* * * * * *
8710052 GCTGATTCCATCTTCCAAACATGGTCTTACACTGGCTCTCATATCATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATG
* ** *
8710100 GCCAACACCATGTCCCAGACATGGTCTTACACTGGCACACATATCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCA
8710146 CCCAAATGTC
Statistics
Matches: 258, Mismatches: 63, Indels: 26
0.74 0.18 0.07
Matches are distributed among these distances:
46 5 0.02
47 9 0.03
48 235 0.91
49 5 0.02
50 4 0.02
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATCATG
Found at i:8713188 original size:46 final size:46
Alignment explanation
Indices: 8713136--8713300 Score: 172
Period size: 46 Copynumber: 3.6 Consensus size: 46
8713126 TTGGGTATCT
8713136 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTCC
* ** * * * * *
8713182 GAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTA-ACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCAT-TTATGGATGCGA-ACGTCC
* * *
8713229 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CC
1 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTCC
* *
8713274 AGAGCTCATTGAGTTGAGTCCGAGTTC
1 -GAACTCGTTGAGTTGAGTCCGAGTTC
8713301 GCTCATGGGC
Statistics
Matches: 95, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 58 0.61
47 35 0.37
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGTCC
Found at i:8720212 original size:15 final size:15
Alignment explanation
Indices: 8720170--8720213 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8720160 CATAGTATCG
*
8720170 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
8720185 TAT-TCTGGGTTTCTC
1 TATCT-TGGATTTCTC
8720200 TATCTTGGATTTCT
1 TATCTTGGATTTCT
8720214 TTATTCGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:8720228 original size:14 final size:14
Alignment explanation
Indices: 8720176--8720228 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
8720166 ATCGTATCTT
8720176 GGATTTCTTTATTC
1 GGATTTCTTTATTC
* * *
8720190 TGGGTTTCTCTATCTT
1 -GGATTTCTTTAT-TC
8720206 GGATTTCTTTATTC
1 GGATTTCTTTATTC
*
8720220 GGTTTTCTT
1 GGATTTCTT
8720229 GTTATCTTTA
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
14 9 0.30
15 20 0.67
16 1 0.03
ACGTcount: A:0.09, C:0.15, G:0.17, T:0.58
Consensus pattern (14 bp):
GGATTTCTTTATTC
Found at i:8720242 original size:30 final size:30
Alignment explanation
Indices: 8720170--8720227 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
8720160 CATAGTATCG
8720170 TATCTTGGATTTCTTTATTCTGGGTTTCTC
1 TATCTTGGATTTCTTTATTCTGGGTTTCTC
*
8720200 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGGTTTCT
8720228 TGTTATCTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 7 0.26
30 20 0.74
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.59
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGGTTTCTC
Found at i:8731010 original size:24 final size:22
Alignment explanation
Indices: 8730981--8731031 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 22
8730971 ATCGTACTTT
8730981 TATTTTTAT-TATTTTATTTTATTA
1 TATTTTT-TGTATTTT-TTTTA-TA
*
8731005 TATTTTTTGTCTTTTTTTTATA
1 TATTTTTTGTATTTTTTTTATA
8731027 TATTT
1 TATTT
8731032 GTCCTCTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 7 0.28
23 6 0.24
24 12 0.48
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.76
Consensus pattern (22 bp):
TATTTTTTGTATTTTTTTTATA
Found at i:8736971 original size:14 final size:14
Alignment explanation
Indices: 8736952--8736980 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
8736942 AGGAAAACCA
8736952 AAAACAAAATCCAT
1 AAAACAAAATCCAT
8736966 AAAACAAAATCCAT
1 AAAACAAAATCCAT
8736980 A
1 A
8736981 GCTATTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.21, G:0.00, T:0.14
Consensus pattern (14 bp):
AAAACAAAATCCAT
Found at i:8750920 original size:42 final size:42
Alignment explanation
Indices: 8750852--8750991 Score: 172
Period size: 42 Copynumber: 3.3 Consensus size: 42
8750842 TATAACCATA
* * *
8750852 TCTGGGATATGGCATTGAGATGAGATTTCGTGTAAGACCACG
1 TCTGGGATATGGCATCGAAATGAGATTTCATGTAAGACCACG
* * * **
8750894 TCTGGGACATGGCATCGAAATAAGATTTCATATAAGACCATA
1 TCTGGGATATGGCATCGAAATGAGATTTCATGTAAGACCACG
* ** *
8750936 TTTGGGATATGGCATCGATGTGAGATCTCATGTAAGACCACG
1 TCTGGGATATGGCATCGAAATGAGATTTCATGTAAGACCACG
8750978 TCTGGGATATGGCA
1 TCTGGGATATGGCA
8750992 ATGGCATCTT
Statistics
Matches: 80, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.28
Consensus pattern (42 bp):
TCTGGGATATGGCATCGAAATGAGATTTCATGTAAGACCACG
Found at i:8750942 original size:84 final size:84
Alignment explanation
Indices: 8750837--8750991 Score: 233
Period size: 84 Copynumber: 1.8 Consensus size: 84
8750827 ATATGTGCTA
* * *
8750837 TCATATATAACCATATCTGGGATATGGCATTGA-GATGAGATTTCGTGTAAGACCACGTCTGGGA
1 TCATATATAACCATATCTGGGATATGGCATCGATG-TGAGATCTCATGTAAGACCACGTCTGGGA
8750901 CATGGCATCGAAATAAGATT
65 CATGGCATCGAAATAAGATT
*
8750921 TCATATA-AGACCATATTTGGGATATGGCATCGATGTGAGATCTCATGTAAGACCACGTCTGGGA
1 TCATATATA-ACCATATCTGGGATATGGCATCGATGTGAGATCTCATGTAAGACCACGTCTGGGA
*
8750985 TATGGCA
65 CATGGCA
8750992 ATGGCATCTT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 1 0.02
84 62 0.97
85 1 0.02
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (84 bp):
TCATATATAACCATATCTGGGATATGGCATCGATGTGAGATCTCATGTAAGACCACGTCTGGGAC
ATGGCATCGAAATAAGATT
Found at i:8757120 original size:26 final size:26
Alignment explanation
Indices: 8757052--8757124 Score: 83
Period size: 26 Copynumber: 2.8 Consensus size: 26
8757042 TATTTTCTTG
* * * *
8757052 AAATTTTACAAGAGGCAAACTCGTCA
1 AAATTTTACCAGAGGTAAAATTGTCA
8757078 AAATTTTACCAGAGGTAAAATTGTCA
1 AAATTTTACCAGAGGTAAAATTGTCA
* * *
8757104 AAATTTTGCTAGGGGTAAAAT
1 AAATTTTACCAGAGGTAAAAT
8757125 AGGGATGAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.41, C:0.12, G:0.18, T:0.29
Consensus pattern (26 bp):
AAATTTTACCAGAGGTAAAATTGTCA
Found at i:8760851 original size:11 final size:11
Alignment explanation
Indices: 8760835--8760922 Score: 56
Period size: 11 Copynumber: 7.9 Consensus size: 11
8760825 TTTAAAAATG
8760835 AAAAATATTAT
1 AAAAATATTAT
**
8760846 AAAAATATTCC
1 AAAAATATTAT
*
8760857 AAAAATATTTT
1 AAAAATATTAT
*
8760868 AAAATTAAAATTATT
1 -AAA--AATATTA-T
*
8760883 ATAAA-ATTAT
1 AAAAATATTAT
*
8760893 AAAAATAATAT
1 AAAAATATTAT
*
8760904 -AAAATA-TAA
1 AAAAATATTAT
8760913 AAAAATATTA
1 AAAAATATTA
8760923 AAACTTATTA
Statistics
Matches: 60, Mismatches: 10, Indels: 14
0.71 0.12 0.17
Matches are distributed among these distances:
9 2 0.03
10 17 0.28
11 28 0.47
12 5 0.08
14 7 0.12
15 1 0.02
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAAATATTAT
Found at i:8760903 original size:39 final size:39
Alignment explanation
Indices: 8760819--8760903 Score: 91
Period size: 39 Copynumber: 2.2 Consensus size: 39
8760809 AAAAACATTT
* * **
8760819 AAAATGTTTAAAAATGAAAAATATTATAAAAATATTCCA
1 AAAATATTTTAAAATGAAAAATATTATAAAAATATTAAA
* * *
8760858 AAAATATTTTAAAATTAAAATTATTATAAAATTA-TAAA
1 AAAATATTTTAAAATGAAAAATATTATAAAAATATTAAA
8760896 AATAATAT
1 AA-AATAT
8760904 AAAATATAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
38 4 0.11
39 34 0.89
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (39 bp):
AAAATATTTTAAAATGAAAAATATTATAAAAATATTAAA
Found at i:8760924 original size:18 final size:19
Alignment explanation
Indices: 8760882--8760937 Score: 71
Period size: 18 Copynumber: 2.9 Consensus size: 19
8760872 TTAAAATTAT
8760882 TATAAAATTATAAAAATAA
1 TATAAAATTATAAAAATAA
8760901 TATAAAA-TATAAAAA-AA
1 TATAAAATTATAAAAATAA
8760918 TATTAAAACTTATTAAAAAT
1 TA-TAAAA-TTA-TAAAAAT
8760938 TTTAAAACAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 4 0.12
18 13 0.41
19 7 0.22
20 2 0.06
21 6 0.19
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (19 bp):
TATAAAATTATAAAAATAA
Found at i:8760935 original size:19 final size:19
Alignment explanation
Indices: 8760913--8760961 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
8760903 TAAAATATAA
* *
8760913 AAAAATATTAAAACTTATT
1 AAAAATTTTAAAACATATT
8760932 AAAAATTTTAAAACATATT
1 AAAAATTTTAAAACATATT
*
8760951 AGAAATTTTAA
1 AAAAATTTTAA
8760962 TATTTTTAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (19 bp):
AAAAATTTTAAAACATATT
Found at i:8761381 original size:8 final size:8
Alignment explanation
Indices: 8761350--8761456 Score: 54
Period size: 8 Copynumber: 12.0 Consensus size: 8
8761340 TGATTTATAA
*
8761350 AATTTATT
1 AATTTTTT
*
8761358 AAATTTTT
1 AATTTTTT
*
8761366 ACAATTTTT
1 A-ATTTTTT
8761375 AATTTTTT
1 AATTTTTT
8761383 AATTATTTT
1 AATT-TTTT
8761392 ACTATTATTTT
1 A--ATT-TTTT
8761403 AATTTTTAAAT
1 AATTTTT---T
8761414 AATTTTTGT
1 AATTTTT-T
8761423 AAATATTTTT
1 -AAT-TTTTT
* *
8761433 TATTTTTA
1 AATTTTTT
8761441 AATATTTTT
1 AAT-TTTTT
8761450 -ATTTTTT
1 AATTTTTT
8761457 TCAAATTATG
Statistics
Matches: 81, Mismatches: 8, Indels: 21
0.74 0.07 0.19
Matches are distributed among these distances:
7 5 0.06
8 28 0.35
9 23 0.28
10 4 0.05
11 21 0.26
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.65
Consensus pattern (8 bp):
AATTTTTT
Found at i:8761381 original size:17 final size:18
Alignment explanation
Indices: 8761350--8761383 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8761340 TGATTTATAA
8761350 AATTTATTAAATTTTTAC
1 AATTTATTAAATTTTTAC
*
8761368 AATTT-TTAATTTTTTA
1 AATTTATTAAATTTTTA
8761384 ATTATTTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
AATTTATTAAATTTTTAC
Found at i:8761391 original size:17 final size:17
Alignment explanation
Indices: 8761356--8761456 Score: 55
Period size: 17 Copynumber: 5.6 Consensus size: 17
8761346 ATAAAATTTA
*
8761356 TTAAATTTTTACAAT-TT
1 TTAATTTTTTA-AATATT
*
8761373 TTAATTTTTTAATTATT
1 TTAATTTTTTAAATATT
*
8761390 TTACTATTATTTT-AATTTT
1 TTA--ATT-TTTTAAATATT
8761409 TAAATAATTTTTGTAAATATT
1 T---TAATTTTT-TAAATATT
*
8761430 TT-TTATTTTTAAATATT
1 TTAAT-TTTTTAAATATT
*
8761447 TTTATTTTTT
1 TTAATTTTTT
8761457 TCAAATTATG
Statistics
Matches: 66, Mismatches: 7, Indels: 22
0.69 0.07 0.23
Matches are distributed among these distances:
16 2 0.03
17 31 0.47
18 6 0.09
19 11 0.17
20 8 0.12
21 6 0.09
22 2 0.03
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.66
Consensus pattern (17 bp):
TTAATTTTTTAAATATT
Found at i:8761420 original size:29 final size:28
Alignment explanation
Indices: 8761359--8761457 Score: 84
Period size: 28 Copynumber: 3.6 Consensus size: 28
8761349 AAATTTATTA
* *
8761359 AATTTTTAC-AATTTTTAATTTTTTAAT
1 AATTTTTACTATTTTTTAATTTTTAAAT
*
8761386 TA-TTTTACTATTATTTTAATTTTTAAAT
1 AATTTTTACTATT-TTTTAATTTTTAAAT
*
8761414 AATTTTTGTAAATATTTTTT-ATTTTTAAAT
1 AA-TTTT-T-ACTATTTTTTAATTTTTAAAT
8761444 -ATTTTTA-T-TTTTTT
1 AATTTTTACTATTTTTT
8761458 CAAATTATGA
Statistics
Matches: 61, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
24 6 0.10
25 1 0.02
26 7 0.11
27 4 0.07
28 19 0.31
29 1 0.02
30 13 0.21
31 5 0.08
32 5 0.08
ACGTcount: A:0.30, C:0.02, G:0.01, T:0.67
Consensus pattern (28 bp):
AATTTTTACTATTTTTTAATTTTTAAAT
Found at i:8761457 original size:19 final size:17
Alignment explanation
Indices: 8761416--8761462 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
8761406 TTTTAAATAA
*
8761416 TTTTTGTAAATATTTTT
1 TTTTTTTAAATATTTTT
*
8761433 TATTTTTAAATATTTTT
1 TTTTTTTAAATATTTTT
8761450 ATTTTTTTCAAAT
1 -TTTTTTT-AAAT
8761463 TATGACATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 15 0.60
18 6 0.24
19 4 0.16
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTTTTTAAATATTTTT
Found at i:8763188 original size:36 final size:36
Alignment explanation
Indices: 8763069--8763551 Score: 463
Period size: 36 Copynumber: 13.1 Consensus size: 36
8763059 TTAGTATAAC
* * *
8763069 CAGTGGATAATGCTCGTTTGAGCAAGCATTCAGTATAAT
1 CAGTAGATATTGCTCGTTTGAGC-A-C-TTCAGTAGAAT
* * *
8763108 CAGTGGATACTGCTCATTTGAGCAACTATTCAGTAGAAT
1 CAGTAGATATTGCTCGTTTGAGC-AC--TTCAGTAGAAT
* *
8763147 TAGTAGATATTGCTCGTTTGAGCACATCAGTAGAAT
1 CAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAAT
* * * *
8763183 CAGTAGACAATGCTCGTTTGAGCACATTTAGTAGGAT
1 CAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAAT
* * *
8763220 CGGTAGTTATTGCTCG-TTGAGCACTTTTAGTAGAAT
1 CAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAAT
* * *
8763256 CAATAGATATTTCTCGTTTGAGCACTTCAGTAGAAC
1 CAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAAT
* * *
8763292 CACTAGAAATTGCTCGTTTGAGCACATTCAGTAGGAT
1 CAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAAT
*
8763329 TAGTAGATATTGCTCG-TTGAGCACTTTCAGTAGAAT
1 CAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAAT
*
8763365 CAGTAGATATTGCTCGTTTGAGCACTTTTAGTAGAAT
1 CAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAAT
* * * * *
8763402 CAGTAGACATTGCTTGTTTGAACATATTCAGTAGGAT
1 CAGTAGATATTGCTCGTTTGAGCA-CTTCAGTAGAAT
* * *
8763439 CAGTAGATATTGCTTG-TTCAGCTCTTTCAGTAGAAT
1 CAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAAT
* *
8763475 CAGTAGATATTGCTCGTTTGACCATTTTCAGTAGAA-
1 CAGTAGATATTGCTCGTTTGAGCA-CTTCAGTAGAAT
* * * *
8763511 CTAGTACATATTGCTTG-TTGAGCACTTCAATAAAAT
1 C-AGTAGATATTGCTCGTTTGAGCACTTCAGTAGAAT
8763547 CAGTA
1 CAGTA
8763552 TTCCTTTTTT
Statistics
Matches: 372, Mismatches: 61, Indels: 26
0.81 0.13 0.06
Matches are distributed among these distances:
35 12 0.03
36 163 0.44
37 141 0.38
38 3 0.01
39 53 0.14
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (36 bp):
CAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAAT
Found at i:8763253 original size:73 final size:73
Alignment explanation
Indices: 8763069--8763551 Score: 476
Period size: 73 Copynumber: 6.6 Consensus size: 73
8763059 TTAGTATAAC
* * * * * * *
8763069 CAGTGGATAATGCTCGTTTGAGCAAGCATTCAGTATAATCAGTGGATACTGCTCATTTGAGCAAC
1 CAGTAGATATTGCTCGTTTGAGC-A-CTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGC-AC
8763134 TATTCAGTAGAAT
63 --TTCAGTAGAAT
* * * *
8763147 TAGTAGATATTGCTCGTTTGAGCAC-ATCAGTAGAATCAGTAGACAATGCTCGTTTGAGCACATT
1 CAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TT
* *
8763211 TAGTAGGAT
65 CAGTAGAAT
* * * * *
8763220 CGGTAGTTATTGCTCG-TTGAGCACTTTTAGTAGAATCAATAGATATTTCTCGTTTGAGCACTTC
1 CAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTC
*
8763284 AGTAGAAC
66 AGTAGAAT
* * * * *
8763292 CACTAGAAATTGCTCGTTTGAGCACATTCAGTAGGATTAGTAGATATTGCTCG-TTGAGCACTTT
1 CAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TT
8763356 CAGTAGAAT
65 CAGTAGAAT
* * * * *
8763365 CAGTAGATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGACATTGCTTGTTTGAACATATT
1 CAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCA-CTT
*
8763430 CAGTAGGAT
65 CAGTAGAAT
* * * * *
8763439 CAGTAGATATTGCTTG-TTCAGCTCTTTCAGTAGAATCAGTAGATATTGCTCGTTTGACCATTTT
1 CAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCA-CTT
8763503 CAGTAGAA-
65 CAGTAGAAT
* * * *
8763511 CTAGTACATATTGCTTG-TTGAGCAC-TTCAATAAAATCAGTA
1 C-AGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTA
8763552 TTCCTTTTTT
Statistics
Matches: 340, Mismatches: 59, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
72 51 0.15
73 206 0.61
74 33 0.10
75 28 0.08
76 1 0.00
77 1 0.00
78 20 0.06
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
CAGTAGATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTC
AGTAGAAT
Found at i:8763273 original size:109 final size:109
Alignment explanation
Indices: 8763077--8763510 Score: 555
Period size: 109 Copynumber: 3.9 Consensus size: 109
8763067 ACCAGTGGAT
** * * *
8763077 AATGCTCGTTTGAGCAAGCATTCAGTATAATCAGTGGATACTGCTCATTTGAGCAACTATTCAGT
1 AATGCTCGTTTGAGC-A-CATTCAGTAGGATCAGTAGATATTGCTC-GTTGAGC-ACT-TTCAGT
* *
8763142 AGAATTAGTAGATATTGCTCGTTTGAGCACATCAGTAGAATCAGTAGAC
61 AGAATCAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGAC
* * * *
8763191 AATGCTCGTTTGAGCACATTTAGTAGGATCGGTAGTTATTGCTCGTTGAGCACTTTTAGTAGAAT
1 AATGCTCGTTTGAGCACATTCAGTAGGATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAAT
* * * *
8763256 CAATAGATATTTCTCGTTTGAGCACTTCAGTAGAACCACTAGA-
66 CAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGAC
*
8763299 AATTGCTCGTTTGAGCACATTCAGTAGGATTAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAA
1 AA-TGCTCGTTTGAGCACATTCAGTAGGATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAA
*
8763364 TCAGTAGATATTGCTCGTTTGAGCACTTTTAGTAGAATCAGTAGAC
65 TCAGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATCAGTAGAC
* * * * * * *
8763410 ATTGCTTGTTTGAACATATTCAGTAGGATCAGTAGATATTGCTTGTTCAGCTCTTTCAGTAGAAT
1 AATGCTCGTTTGAGCACATTCAGTAGGATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAAT
* *
8763475 CAGTAGATATTGCTCGTTTGACCATTTTCAGTAGAA
66 CAGTAGATATTGCTCGTTTGAGCA-CTTCAGTAGAA
8763511 CTAGTACATA
Statistics
Matches: 280, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
108 2 0.01
109 128 0.46
110 106 0.38
111 7 0.03
112 21 0.08
113 1 0.00
114 15 0.05
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (109 bp):
AATGCTCGTTTGAGCACATTCAGTAGGATCAGTAGATATTGCTCGTTGAGCACTTTCAGTAGAAT
CAGTAGATATTGCTCGTTTGAGCACTTCAGTAGAATCAGTAGAC
Found at i:8765203 original size:22 final size:22
Alignment explanation
Indices: 8765178--8765220 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8765168 GATATGGAGT
* *
8765178 ATATCATACATAGATGCAGAAC
1 ATATCAAACACAGATGCAGAAC
*
8765200 ATATCAAATACAGATGCAGAA
1 ATATCAAACACAGATGCAGAA
8765221 TCCTACCCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.49, C:0.16, G:0.14, T:0.21
Consensus pattern (22 bp):
ATATCAAACACAGATGCAGAAC
Found at i:8765564 original size:24 final size:22
Alignment explanation
Indices: 8765537--8765603 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
8765527 TACTTAATAG
* *
8765537 ACATCATATTAAATATATGTACAA
1 ACATCAGATTAAATA-ATAT-CAA
*
8765561 ACATCAGATTATATAATATCAA
1 ACATCAGATTAAATAATATCAA
* *
8765583 ACATCAGATTATACAATATCA
1 ACATCAGATTAAATAATATCA
8765604 GATAATCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
22 23 0.59
23 3 0.08
24 13 0.33
ACGTcount: A:0.49, C:0.15, G:0.04, T:0.31
Consensus pattern (22 bp):
ACATCAGATTAAATAATATCAA
Found at i:8765583 original size:22 final size:22
Alignment explanation
Indices: 8765558--8765603 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
8765548 AATATATGTA
*
8765558 CAAACATCAGATTATATAATAT
1 CAAACATCAGATTATACAATAT
8765580 CAAACATCAGATTATACAATAT
1 CAAACATCAGATTATACAATAT
8765602 CA
1 CA
8765604 GATAATCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.04, T:0.28
Consensus pattern (22 bp):
CAAACATCAGATTATACAATAT
Found at i:8773478 original size:22 final size:22
Alignment explanation
Indices: 8773453--8773495 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8773443 GATACAGAGT
* *
8773453 ATATCAGATACAGATGCAGAAC
1 ATATCAAATACAAATGCAGAAC
*
8773475 ATATGAAATACAAATGCAGAA
1 ATATCAAATACAAATGCAGAA
8773496 TCCTACCCCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.19
Consensus pattern (22 bp):
ATATCAAATACAAATGCAGAAC
Found at i:8779466 original size:12 final size:12
Alignment explanation
Indices: 8779449--8779476 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8779439 ATCCATTGAA
8779449 ATTGATGATGCT
1 ATTGATGATGCT
8779461 ATTGATGATGCT
1 ATTGATGATGCT
8779473 ATTG
1 ATTG
8779477 GCAATGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.43
Consensus pattern (12 bp):
ATTGATGATGCT
Found at i:8784266 original size:39 final size:39
Alignment explanation
Indices: 8784212--8784288 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
8784202 GGTTTACAAT
8784212 GTGTGTTTTCCTTCCAAGTGTCACAGAAGAGTTAGGGAA
1 GTGTGTTTTCCTTCCAAGTGTCACAGAAGAGTTAGGGAA
8784251 GTGTGTTTTCCTTCCAAGTGTCACAGAAGAGTTAGGGA
1 GTGTGTTTTCCTTCCAAGTGTCACAGAAGAGTTAGGGA
8784289 TGACAACGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (39 bp):
GTGTGTTTTCCTTCCAAGTGTCACAGAAGAGTTAGGGAA
Found at i:8786232 original size:29 final size:29
Alignment explanation
Indices: 8786190--8786245 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
8786180 GTAAGCTTCA
*
8786190 ATGTGGCTATACCAAGCCCTTGGGGCTCG
1 ATGTGGCTATACCAAGCCCTTAGGGCTCG
8786219 ATGTGGCTATACCAAGCCCTTAGGGCT
1 ATGTGGCTATACCAAGCCCTTAGGGCT
8786246 TGTTTTAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.20, C:0.27, G:0.29, T:0.25
Consensus pattern (29 bp):
ATGTGGCTATACCAAGCCCTTAGGGCTCG
Found at i:8790915 original size:5 final size:5
Alignment explanation
Indices: 8790905--8790933 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
8790895 CCAATTTTTG
8790905 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
8790934 AACACATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:8795319 original size:40 final size:40
Alignment explanation
Indices: 8795270--8795349 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
8795260 AATTGAATAA
* *
8795270 ATTGGGTATTAGCGGCGTTTTTTCAAAAACGCCGCTATAG
1 ATTGAGTATTAGCGGCGTTTTTACAAAAACGCCGCTATAG
* * * *
8795310 ATTGAGTATTAGCGGTGTTTTTACTAAAGCTCCGCTATAG
1 ATTGAGTATTAGCGGCGTTTTTACAAAAACGCCGCTATAG
8795350 GTCTACCTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.25, C:0.16, G:0.24, T:0.35
Consensus pattern (40 bp):
ATTGAGTATTAGCGGCGTTTTTACAAAAACGCCGCTATAG
Found at i:8795495 original size:130 final size:130
Alignment explanation
Indices: 8795336--8795585 Score: 385
Period size: 130 Copynumber: 1.9 Consensus size: 130
8795326 GTTTTTACTA
* * * * *
8795336 AAGCTCCGCTATAGGTCTACCTATAGCGGCGTTTTTATAAAAATGCCACTAAAAGATTAAGCCAA
1 AAGCGCCGCTATAGGTCGACCTATAGCGGCGTTTGTACAAAAACGCCACTAAAAGATTAAGCCAA
*
8795401 ACGACGTCGTTTATTGC-GAGCTTCAGTGGCAATAGCGGCGCTTCATCAAAAACGCGTTTTTAAG
66 ACGACGTCGTTTATT-CTGAGCTTCAGTGGCAATAACGGCGCTTCATCAAAAACGCGTTTTTAAG
8795465 G
130 G
* * *
8795466 AAGCGCCGCTATAGGTCGACTTATAGCGGCGTTTGTACAAAAACGCCGCTAAAAGATTAAGCCGA
1 AAGCGCCGCTATAGGTCGACCTATAGCGGCGTTTGTACAAAAACGCCACTAAAAGATTAAGCCAA
* *
8795531 ACGGCGTCGTTTATTCTGAGCTTCAGTGGCAATAACGGCGCTTCCTCAAAAACGC
66 ACGACGTCGTTTATTCTGAGCTTCAGTGGCAATAACGGCGCTTCATCAAAAACGC
8795586 CGCTATAGAT
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
129 1 0.01
130 107 0.99
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (130 bp):
AAGCGCCGCTATAGGTCGACCTATAGCGGCGTTTGTACAAAAACGCCACTAAAAGATTAAGCCAA
ACGACGTCGTTTATTCTGAGCTTCAGTGGCAATAACGGCGCTTCATCAAAAACGCGTTTTTAAGG
Found at i:8795621 original size:40 final size:42
Alignment explanation
Indices: 8795577--8795718 Score: 184
Period size: 41 Copynumber: 3.5 Consensus size: 42
8795567 GGCGCTTCCT
*
8795577 CAAAAACGCCGCTATAGA-TTGAGTATTAGCGGCGCTTTTT-
1 CAAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTA
* *
8795617 CAAAAACGCCACTA-AGGATTTGAGTTTTAGTGGCG-TTTTTA
1 CAAAAACGCCGCTATA-GATTTGAGTTTTAGCGGCGCTTTTTA
* * *
8795658 GAAAAACGCCGCAATAGATTTGAGTTTTAGCGGCGCTTTTTG
1 CAAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTA
*
8795700 GAAAAACGCCGCTATAGAT
1 CAAAAACGCCGCTATAGAT
8795719 GAAAACTATT
Statistics
Matches: 88, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
39 1 0.01
40 20 0.23
41 43 0.49
42 24 0.27
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (42 bp):
CAAAAACGCCGCTATAGATTTGAGTTTTAGCGGCGCTTTTTA
Found at i:8796294 original size:28 final size:29
Alignment explanation
Indices: 8796242--8796296 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
8796232 TTTAACCCCT
* *
8796242 AAACCCATAAACTATAGACCTTAAATTTG
1 AAACCCATAAACTATAAACCCTAAATTTG
8796271 AAACCC-TAAACTATAAACCCTAAATT
1 AAACCCATAAACTATAAACCCTAAATT
8796297 AATGACACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 18 0.75
29 6 0.25
ACGTcount: A:0.47, C:0.24, G:0.04, T:0.25
Consensus pattern (29 bp):
AAACCCATAAACTATAAACCCTAAATTTG
Found at i:8796541 original size:16 final size:14
Alignment explanation
Indices: 8796520--8796557 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 14
8796510 AGGTTTATGC
8796520 ATGGTTTAGGGTATAT
1 ATGGTTTAGGGT-T-T
8796536 ATGGTTTAGGGTTT
1 ATGGTTTAGGGTTT
8796550 ATGGTTTA
1 ATGGTTTA
8796558 TATGGATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 9 0.41
15 1 0.05
16 12 0.55
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (14 bp):
ATGGTTTAGGGTTT
Found at i:8796731 original size:8 final size:7
Alignment explanation
Indices: 8796718--8796841 Score: 79
Period size: 7 Copynumber: 17.3 Consensus size: 7
8796708 AATGGCTAAA
8796718 GGTTTAG
1 GGTTTAG
8796725 GGATTTAG
1 GG-TTTAG
*
8796733 GGTTTAT
1 GGTTTAG
8796740 GGTTTAG
1 GGTTTAG
* *
8796747 GGGTTAA
1 GGTTTAG
** *
8796754 CATTTAAA
1 GGTTT-AG
*
8796762 GGTTGAG
1 GGTTTAG
*
8796769 GGTCTAGG
1 GGTTTA-G
*
8796777 GGTTAAG
1 GGTTTAG
**
8796784 GGGATA-
1 GGTTTAG
8796790 GGTTTAG
1 GGTTTAG
8796797 GGTTTAG
1 GGTTTAG
8796804 GGTTTAG
1 GGTTTAG
*
8796811 GGTTTAT
1 GGTTTAG
*
8796818 GGTTTAA
1 GGTTTAG
*
8796825 GGTTCAAG
1 GGTT-TAG
8796833 GGTTTAG
1 GGTTTAG
8796840 GG
1 GG
8796842 GTTAATGGGA
Statistics
Matches: 87, Mismatches: 25, Indels: 10
0.71 0.20 0.08
Matches are distributed among these distances:
6 4 0.05
7 62 0.71
8 21 0.24
ACGTcount: A:0.21, C:0.02, G:0.40, T:0.37
Consensus pattern (7 bp):
GGTTTAG
Found at i:8796835 original size:64 final size:65
Alignment explanation
Indices: 8796726--8796868 Score: 173
Period size: 64 Copynumber: 2.2 Consensus size: 65
8796716 AAGGTTTAGG
* * *
8796726 GATTTAGGGTTTATGGTTTAGGGGTTAACATTTAAAGGTTGAGGGTCTAGGGGTTAAGGGGATA-
1 GATTTAGGGTTTAGGGTTTAGGGGTTAACATTTAAAGGTTAAGGGTCTAGGGGTTAAGGGGACAT
* * *** * *
8796790 GGTTTAGGGTTTAGGGTTTAGGGTTTATGGTTT-AAGGTTCAAGGGTTTAGGGGTTAATGGGACA
1 GATTTAGGGTTTAGGGTTTAGGGGTTAACATTTAAAGGTT-AAGGGTCTAGGGGTTAAGGGGACA
8796854 T
65 T
8796855 GATTTAGGGTTTAG
1 GATTTAGGGTTTAG
8796869 TATTTAAATT
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
63 6 0.09
64 47 0.71
65 13 0.20
ACGTcount: A:0.22, C:0.03, G:0.38, T:0.37
Consensus pattern (65 bp):
GATTTAGGGTTTAGGGTTTAGGGGTTAACATTTAAAGGTTAAGGGTCTAGGGGTTAAGGGGACAT
Found at i:8796890 original size:65 final size:64
Alignment explanation
Indices: 8796757--8796914 Score: 149
Period size: 65 Copynumber: 2.5 Consensus size: 64
8796747 GGGTTAACAT
* * * * * * ** * *
8796757 TTAAAGGTTGAGGGTCTAGGGGTTAAGGGGATAGGTTTAGGGTTTAGGGTTTAGGGTTTATGGT
1 TTAAGGGTTAAGGGTTTAGGGGTTAAGGGGACAGATTTAGGGTTTAGGATTTAAAGTTTAAGGA
* * *
8796821 TTAA-GGTTCAAGGGTTTAGGGGTTAATGGGACATGATTTAGGGTTTAGTATTTAAATTTTAAGG
1 TTAAGGGTT-AAGGGTTTAGGGGTTAAGGGGACA-GATTTAGGGTTTAGGATTTAAAGTTTAAGG
8796885 A
64 A
* *
8796886 TTAAGGGTTAATGGTTTA-GGGTTGAGGGG
1 TTAAGGGTTAAGGGTTTAGGGGTTAAGGGG
8796915 TTTAGGGATT
Statistics
Matches: 76, Mismatches: 15, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
63 4 0.05
64 33 0.43
65 35 0.46
66 4 0.05
ACGTcount: A:0.24, C:0.02, G:0.37, T:0.37
Consensus pattern (64 bp):
TTAAGGGTTAAGGGTTTAGGGGTTAAGGGGACAGATTTAGGGTTTAGGATTTAAAGTTTAAGGA
Found at i:8797258 original size:18 final size:17
Alignment explanation
Indices: 8797220--8797255 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
8797210 CTATATAACT
8797220 TATTGTTTTTTAATTTA
1 TATTGTTTTTTAATTTA
8797237 TATTGTTTTTT-ATTTA
1 TATTGTTTTTTAATTTA
8797253 TAT
1 TAT
8797256 ATTAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TATTGTTTTTTAATTTA
Found at i:8800332 original size:39 final size:39
Alignment explanation
Indices: 8800278--8800365 Score: 115
Period size: 39 Copynumber: 2.3 Consensus size: 39
8800268 GGTATTGGAA
* *
8800278 AAATATATCCAGACTTGAAGTCCGCAGGCTTTA-TGCTGG
1 AAATATATCCAGACTTAAAGTCCGCAGGC-TAAGTGCTGG
**
8800317 AAATATATCTGGACTTAAAGTCCGCAGGCTAAGTGCTGG
1 AAATATATCCAGACTTAAAGTCCGCAGGCTAAGTGCTGG
*
8800356 AAAAATATCC
1 AAATATATCC
8800366 GGGCTAAGTC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
38 2 0.05
39 40 0.95
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (39 bp):
AAATATATCCAGACTTAAAGTCCGCAGGCTAAGTGCTGG
Found at i:8800392 original size:39 final size:39
Alignment explanation
Indices: 8800360--8800653 Score: 480
Period size: 39 Copynumber: 7.5 Consensus size: 39
8800350 TGCTGGAAAA
*
8800360 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
8800399 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
* **
8800438 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
8800477 ATATCCGGGCTAAGTCCTGAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
**
8800516 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
8800555 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
*
8800594 ATATCCGGGCTAAGTCCCAAAGGCATTCGTGCTGGTATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
8800633 ATATCCGGGCTTAAAGTCCCG
1 ATATCCGGGC-T-AAGTCCCG
8800654 CATGCTTTGT
Statistics
Matches: 238, Mismatches: 15, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
39 230 0.97
40 1 0.00
41 7 0.03
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.28
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTATT
Found at i:8806111 original size:9 final size:9
Alignment explanation
Indices: 8806088--8806215 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
8806078 ATTGATAATT
*
8806088 ACTTAAATA
1 ACTTACATA
*
8806097 AATTACATA
1 ACTTACATA
8806106 ACTTACATA
1 ACTTACATA
* *
8806115 ACTCATATA
1 ACTTACATA
8806124 ACTTACATA
1 ACTTACATA
*
8806133 ATTTACATAACA
1 ACTTACAT---A
8806145 ACTTACATA
1 ACTTACATA
*
8806154 ACTCACATA
1 ACTTACATA
8806163 ACTTACATA
1 ACTTACATA
*
8806172 ATTTACATA
1 ACTTACATA
*
8806181 ACTCACATA
1 ACTTACATA
*
8806190 ACGTACATAACA
1 ACTTACAT---A
8806202 ACTTACATA
1 ACTTACATA
8806211 ACTTA
1 ACTTA
8806216 ACTAATACAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 80 0.83
12 16 0.17
ACGTcount: A:0.47, C:0.21, G:0.01, T:0.31
Consensus pattern (9 bp):
ACTTACATA
Found at i:8806157 original size:39 final size:39
Alignment explanation
Indices: 8806105--8806182 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
8806095 TAAATTACAT
*
8806105 AACTTACATAACTCATATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
8806144 AACTTACATAACTCACATAACTTACATAATTTACATAAC
1 AACTTACATAACTCACATAACTTACATAATTTACATAAC
8806183 TCACATAACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (39 bp):
AACTTACATAACTCACATAACTTACATAATTTACATAAC
Found at i:8806182 original size:57 final size:57
Alignment explanation
Indices: 8806101--8806213 Score: 172
Period size: 57 Copynumber: 2.0 Consensus size: 57
8806091 TAAATAAATT
* * **
8806101 ACATAACTTACATAACTCATATAACTTACATAATTTACATAACAACTTACATAACTC
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
* *
8806158 ACATAACTTACATAATTTACATAACTCACATAACGTACATAACAACTTACATAACT
1 ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACT
8806214 TAACTAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.46, C:0.23, G:0.01, T:0.30
Consensus pattern (57 bp):
ACATAACTTACATAACTCACATAACTCACATAACGTACATAACAACTTACATAACTC
Found at i:8812118 original size:33 final size:33
Alignment explanation
Indices: 8812076--8812158 Score: 89
Period size: 31 Copynumber: 2.6 Consensus size: 33
8812066 TTTAGAATTA
* *
8812076 ATGTTTTTGGTTGTATTTTTTATGCTAAATTTG
1 ATGTTTTTGGTTGCATTTTTTATACTAAATTTG
* *
8812109 ATGTTTTTGGCTGCA--TTTTATACTATATTTG
1 ATGTTTTTGGTTGCATTTTTTATACTAAATTTG
* * *
8812140 TTGTATTTGGTTGGATTTT
1 ATGTTTTTGGTTGCATTTT
8812159 AATGCAGGAA
Statistics
Matches: 40, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
31 25 0.62
33 15 0.38
ACGTcount: A:0.17, C:0.05, G:0.19, T:0.59
Consensus pattern (33 bp):
ATGTTTTTGGTTGCATTTTTTATACTAAATTTG
Found at i:8812259 original size:43 final size:43
Alignment explanation
Indices: 8812228--8812347 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 43
8812218 GCGTTTGTGG
* *
8812228 AAAAAGCGCCGCTAAAAGATGTGACTTTTAGCGGTGCTTTTCCC
1 AAAAA-CGCCGCTAAAAGACGTGACTTTTAGCGGCGCTTTTCCC
* *
8812272 ATAAACGCCGCTAAAAGACGTGACTTTTAGTGGCGCTTTTCCC
1 AAAAACGCCGCTAAAAGACGTGACTTTTAGCGGCGCTTTTCCC
* * *
8812315 ACAAACACCGCTAAAAG-CTGTGATTTTTAGCGG
1 AAAAACGCCGCTAAAAGAC-GTGACTTTTAGCGG
8812348 AGTTTTTTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 1 0.01
43 62 0.93
44 4 0.06
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (43 bp):
AAAAACGCCGCTAAAAGACGTGACTTTTAGCGGCGCTTTTCCC
Found at i:8816165 original size:30 final size:32
Alignment explanation
Indices: 8816131--8816191 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 32
8816121 AAACCTTTTT
*
8816131 ACTTT-TCCCTCAAAACTTTTAC-CC-CTTCCC
1 ACTTTCTCCC-CAAAACTCTTACTCCTCTTCCC
8816161 ACTTTCTCCCCAAAACTCTTACTCCTCTTCC
1 ACTTTCTCCCCAAAACTCTTACTCCTCTTCC
8816192 ATCCAACCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
30 16 0.59
31 6 0.22
32 5 0.19
ACGTcount: A:0.20, C:0.44, G:0.00, T:0.36
Consensus pattern (32 bp):
ACTTTCTCCCCAAAACTCTTACTCCTCTTCCC
Found at i:8816338 original size:30 final size:30
Alignment explanation
Indices: 8816296--8816354 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
8816286 AACTTTTTAT
*
8816296 TTTCTCCCAAAATTTTTAC-TCCCTCCCAC
1 TTTCCCCCAAAATTTTTACTTCCCTCCCAC
*
8816325 TTTCCCCCTAAAATTTTTACTTCCTTCCCA
1 TTTCCCCC-AAAATTTTTACTTCCCTCCCA
8816355 TCCCACCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 7 0.27
30 11 0.42
31 8 0.31
ACGTcount: A:0.20, C:0.39, G:0.00, T:0.41
Consensus pattern (30 bp):
TTTCCCCCAAAATTTTTACTTCCCTCCCAC
Found at i:8817619 original size:30 final size:30
Alignment explanation
Indices: 8817585--8817649 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
8817575 TCTCAACATA
*
8817585 AGGAAGAAAATTACTATGGTTTGATTGTGG
1 AGGAAGAAAATTACTATGGCTTGATTGTGG
8817615 AGGAAGAAAATTACTATGGCTTGATTGTGG
1 AGGAAGAAAATTACTATGGCTTGATTGTGG
8817645 AGGAA
1 AGGAA
8817650 ATGTCAAATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.35, C:0.05, G:0.31, T:0.29
Consensus pattern (30 bp):
AGGAAGAAAATTACTATGGCTTGATTGTGG
Found at i:8821833 original size:18 final size:18
Alignment explanation
Indices: 8821810--8821847 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
8821800 TTGGTTAAAG
8821810 TTTATTGGGCTTTAGTTA
1 TTTATTGGGCTTTAGTTA
8821828 TTTATTGGGCTTTAGTTA
1 TTTATTGGGCTTTAGTTA
8821846 TT
1 TT
8821848 AAATAATGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.16, C:0.05, G:0.21, T:0.58
Consensus pattern (18 bp):
TTTATTGGGCTTTAGTTA
Found at i:8823076 original size:37 final size:36
Alignment explanation
Indices: 8823013--8823089 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 36
8823003 ACTTTATATT
*
8823013 TTTATTTTCATCTTTTGTCAATTTTACT-CTTATTTA
1 TTTATTTTCATCTTTAGTCAATTTTACTAC-TATTTA
*
8823049 TTTATTTTTATTCTTTAGTC-ATATTTACTACTATTTA
1 TTTATTTTCA-TCTTTAGTCAAT-TTTACTACTATTTA
8823086 TTTA
1 TTTA
8823090 GAGTACGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
36 11 0.31
37 24 0.67
38 1 0.03
ACGTcount: A:0.22, C:0.12, G:0.03, T:0.64
Consensus pattern (36 bp):
TTTATTTTCATCTTTAGTCAATTTTACTACTATTTA
Found at i:8824561 original size:22 final size:22
Alignment explanation
Indices: 8824533--8824584 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 22
8824523 AAAAAAATAG
8824533 TTTATATACATTTGAAGGTATA
1 TTTATATACATTTGAAGGTATA
* * *
8824555 TTTATAT--TTTTTAAGGTGTA
1 TTTATATACATTTGAAGGTATA
8824575 TTTATATACA
1 TTTATATACA
8824585 ATTTTGTTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 17 0.71
22 7 0.29
ACGTcount: A:0.33, C:0.04, G:0.12, T:0.52
Consensus pattern (22 bp):
TTTATATACATTTGAAGGTATA
Found at i:8825570 original size:30 final size:30
Alignment explanation
Indices: 8825500--8825581 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 30
8825490 GATTAATTCA
*
8825500 AAATTAAAGTTTTAAGTATACATTTGAACC
1 AAATTAAAGTTTCAAGTATACATTTGAACC
* *
8825530 ATAGTTAAAGTTTCACATGTATA-A-TTGCACC
1 A-AATTAAAGTTTCA-A-GTATACATTTGAACC
*
8825561 AAATTAAAGTTT-ATGTATACA
1 AAATTAAAGTTTCAAGTATACA
8825582 ATTACATATT
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 1 0.02
30 11 0.26
31 18 0.42
32 2 0.05
33 5 0.12
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (30 bp):
AAATTAAAGTTTCAAGTATACATTTGAACC
Found at i:8829910 original size:14 final size:13
Alignment explanation
Indices: 8829875--8829913 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
8829865 TTAACTAAAC
* *
8829875 TTTTCAAAATTAT
1 TTTTTAAAAATAT
*
8829888 TTCTTAAAAATAT
1 TTTTTAAAAATAT
8829901 TTTTTAAAAATAT
1 TTTTTAAAAATAT
8829914 AATTAAACTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (13 bp):
TTTTTAAAAATAT
Found at i:8841081 original size:44 final size:44
Alignment explanation
Indices: 8841001--8841360 Score: 306
Period size: 44 Copynumber: 8.3 Consensus size: 44
8840991 ATTTGTAAAT
* * * * * *
8841001 AAAT-TGCCACTACGCTGTGGATGCACAGCAAGATTCGCAGATA
1 AAATCTGCCACTAGGCAGTGGATACACAACAAAATTTGCAGATA
* * * *
8841044 AAATCTACCACTGGGCAGTGAATACACAACAAAATTCGCAGATGA
1 AAATCTGCCACTAGGCAGTGGATACACAACAAAATTTGCAGAT-A
* ** * * * *
8841089 AAAT-TGCCACTAAGTTGTGGATGA-GCAAGAAAATTTGTAGATG
1 AAATCTGCCACTAGGCAGTGGAT-ACACAACAAAATTTGCAGATA
* * * *
8841132 AAATCTGCCAAT-GGCTGTGGATACACAGCAAAATTCGCAGATA
1 AAATCTGCCACTAGGCAGTGGATACACAACAAAATTTGCAGATA
* * * *
8841175 AAATCTACCACTGGGCTA-TGGGTACACAACAAAATTTGTAGATA
1 AAATCTGCCACTAGGC-AGTGGATACACAACAAAATTTGCAGATA
* *
8841219 AAATCTTCCACTA-GCTTGTGGATACACAACAAAATTTGCAGATA
1 AAATCTGCCACTAGGC-AGTGGATACACAACAAAATTTGCAGATA
* ** * *
8841263 AACTCTGCCACTAAGTTA-TGGATACACAATAAAATTTGTAGATA
1 AAATCTGCCACT-AGGCAGTGGATACACAACAAAATTTGCAGATA
* *
8841307 AAATTTGCCACTAGGCCGTGGATACACAACAAAATTTGCAGAT-
1 AAATCTGCCACTAGGCAGTGGATACACAACAAAATTTGCAGATA
8841350 AAA-CTGCCACT
1 AAATCTGCCACT
8841361 TTTCTTCCAT
Statistics
Matches: 251, Mismatches: 55, Indels: 23
0.76 0.17 0.07
Matches are distributed among these distances:
42 8 0.03
43 47 0.19
44 189 0.75
45 7 0.03
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (44 bp):
AAATCTGCCACTAGGCAGTGGATACACAACAAAATTTGCAGATA
Found at i:8841253 original size:131 final size:129
Alignment explanation
Indices: 8840989--8841360 Score: 403
Period size: 131 Copynumber: 2.9 Consensus size: 129
8840979 AACCACCAGT
* * * *
8840989 AAATTTGTAAATAAAT-TGCCACTACGCTGTGGATGCACAGCAAGATTCGCAGATAAAATCTACC
1 AAATTTGTAGATAAATCTGCCACTAAGCTGTGGATACACAGCAAAATTCGCAGATAAAATCTACC
* * * *
8841053 ACTGGGCAGTGAATACACAACAAAATTCGCAGATGAAAATTGCCACTAAGTTGTGGATGAGCAAG
66 ACTGGGCA-TGGATACACAACAAAATTTGCAGAT-AAAATTGCCACTAAGTTGTGGATGAACAAC
8841118 A
129 A
* *
8841119 AAATTTGTAGATGAAATCTGCCAAT-GGCTGTGGATACACAGCAAAATTCGCAGATAAAATCTAC
1 AAATTTGTAGAT-AAATCTGCCACTAAGCTGTGGATACACAGCAAAATTCGCAGATAAAATCTAC
* * *
8841183 CACTGGGCTATGGGTACACAACAAAATTTGTAGATAAAATCTTCCACT-AGCTTGTGGAT-ACAC
65 CACTGGGC-ATGGATACACAACAAAATTTGCAGATAAAAT-TGCCACTAAG-TTGTGGATGA-AC
8841246 AACA
126 AACA
* * * ** * * * *
8841250 AAATTTGCAGATAAACTCTGCCACTAAGTTATGGATACACAATAAAATTTGTAGATAAAATTTGC
1 AAATTTGTAGATAAA-TCTGCCACTAAGCTGTGGATACACAGCAAAATTCGCAGATAAAATCTAC
* * *
8841315 CACTAGGCCGTGGATACACAACAAAATTTGCAGAT-AAACTGCCACT
65 CACT-GGGCATGGATACACAACAAAATTTGCAGATAAAATTGCCACT
8841361 TTTCTTCCAT
Statistics
Matches: 204, Mismatches: 29, Indels: 18
0.81 0.12 0.07
Matches are distributed among these distances:
130 28 0.14
131 109 0.53
132 64 0.31
133 3 0.01
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (129 bp):
AAATTTGTAGATAAATCTGCCACTAAGCTGTGGATACACAGCAAAATTCGCAGATAAAATCTACC
ACTGGGCATGGATACACAACAAAATTTGCAGATAAAATTGCCACTAAGTTGTGGATGAACAACA
Found at i:8841353 original size:88 final size:88
Alignment explanation
Indices: 8841039--8841360 Score: 377
Period size: 88 Copynumber: 3.7 Consensus size: 88
8841029 CAAGATTCGC
* * * *
8841039 AGATAAAATCTACCACTGGGCAGTGAATACACAACAAAATTCGCAGATGAAAAT-TGCCACTAAG
1 AGATAAAATCTGCCACTAGGCTGTGGATACACAACAAAATTCGCAGAT-AAAATCTGCCACTAAG
* * *
8841103 TTGTGGATGA-GCAAGAAAATTTGT
65 TTATGGAT-ACACAACAAAATTTGT
* * * * ** *
8841127 AGATGAAATCTGCCAAT-GGCTGTGGATACACAGCAAAATTCGCAGATAAAATCTACCACTGGGC
1 AGATAAAATCTGCCACTAGGCTGTGGATACACAACAAAATTCGCAGATAAAATCTGCCACTAAGT
*
8841191 TATGGGTACACAACAAAATTTGT
66 TATGGATACACAACAAAATTTGT
* * *
8841214 AGATAAAATCTTCCACTA-GCTTGTGGATACACAACAAAATTTGCAGATAAACTCTGCCACTAAG
1 AGATAAAATCTGCCACTAGGC-TGTGGATACACAACAAAATTCGCAGATAAAATCTGCCACTAAG
*
8841278 TTATGGATACACAATAAAATTTGT
65 TTATGGATACACAACAAAATTTGT
* * *
8841302 AGATAAAATTTGCCACTAGGCCGTGGATACACAACAAAATTTGCAGAT-AAA-CTGCCACT
1 AGATAAAATCTGCCACTAGGCTGTGGATACACAACAAAATTCGCAGATAAAATCTGCCACT
8841361 TTTCTTCCAT
Statistics
Matches: 199, Mismatches: 30, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
86 14 0.07
87 69 0.35
88 114 0.57
89 2 0.01
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (88 bp):
AGATAAAATCTGCCACTAGGCTGTGGATACACAACAAAATTCGCAGATAAAATCTGCCACTAAGT
TATGGATACACAACAAAATTTGT
Found at i:8841477 original size:38 final size:37
Alignment explanation
Indices: 8841421--8841520 Score: 137
Period size: 38 Copynumber: 2.6 Consensus size: 37
8841411 TGCAATAGAA
* *
8841421 CAATTCAACACTAGCAGTAGACATGTTTAACATGTACT
1 CAATTCATCACTA-CAGTAGACATGTTCAACATGTACT
8841459 CAATTCATCACTGACAGTAGACATGTTCAACATGTACT
1 CAATTCATCACT-ACAGTAGACATGTTCAACATGTACT
* *
8841497 CAATTCATCATTAACAATAGACAT
1 CAATTCATCACT-ACAGTAGACAT
8841521 TATCATGTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 55 0.98
39 1 0.02
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (37 bp):
CAATTCATCACTACAGTAGACATGTTCAACATGTACT
Found at i:8854635 original size:17 final size:17
Alignment explanation
Indices: 8854613--8854649 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
8854603 CAGCTATCAA
8854613 TCCGCTGTTTCATTCTG
1 TCCGCTGTTTCATTCTG
8854630 TCCGCTGTTTCATTCTG
1 TCCGCTGTTTCATTCTG
8854647 TCC
1 TCC
8854650 TTTAAGGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.05, C:0.32, G:0.16, T:0.46
Consensus pattern (17 bp):
TCCGCTGTTTCATTCTG
Found at i:8859907 original size:12 final size:12
Alignment explanation
Indices: 8859891--8859946 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
8859881 TTTCAGTTTC
*
8859891 AATTTTAATTTT
1 AATTTTGATTTT
*
8859903 GATTTTGATTTT
1 AATTTTGATTTT
*
8859915 AATTTCT-ATTTC
1 AATTT-TGATTTT
* *
8859927 GATTTTGATTAT
1 AATTTTGATTTT
8859939 AATTTTGA
1 AATTTTGA
8859947 AACACTCACT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
11 1 0.03
12 32 0.94
13 1 0.03
ACGTcount: A:0.27, C:0.04, G:0.09, T:0.61
Consensus pattern (12 bp):
AATTTTGATTTT
Found at i:8859913 original size:18 final size:17
Alignment explanation
Indices: 8859892--8859946 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
8859882 TTCAGTTTCA
8859892 ATTTTAATTTTGATTTTG
1 ATTTTAATTTT-ATTTTG
*
8859910 ATTTTAATTTCTATTTCG
1 ATTTTAATTT-TATTTTG
* *
8859928 ATTTTGATTATAATTTTG
1 ATTTTAATT-TTATTTTG
8859946 A
1 A
8859947 AACACTCACT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
18 29 0.94
19 2 0.06
ACGTcount: A:0.25, C:0.04, G:0.09, T:0.62
Consensus pattern (17 bp):
ATTTTAATTTTATTTTG
Found at i:8859918 original size:24 final size:23
Alignment explanation
Indices: 8859891--8859944 Score: 72
Period size: 24 Copynumber: 2.3 Consensus size: 23
8859881 TTTCAGTTTC
* *
8859891 AATTTTAATTTTGATTTTGATTTT
1 AATTTT-ATTTCGATTTTGATTAT
8859915 AATTTCTATTTCGATTTTGATTAT
1 AATTT-TATTTCGATTTTGATTAT
8859939 AATTTT
1 AATTTT
8859945 GAAACACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
23 1 0.04
24 25 0.93
25 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.07, T:0.63
Consensus pattern (23 bp):
AATTTTATTTCGATTTTGATTAT
Found at i:8859985 original size:18 final size:18
Alignment explanation
Indices: 8859964--8860033 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
8859954 ACTGATTCTG
8859964 ATTTAGATTTCGATTTCA
1 ATTTAGATTTCGATTTCA
* * *
8859982 ATTTTGATTTCGATCTCT
1 ATTTAGATTTCGATTTCA
* * *
8860000 ATTTAGAATTAGAATTT-G
1 ATTTAGATTTCG-ATTTCA
*
8860018 ATTTTGATTTCGATTT
1 ATTTAGATTTCGATTT
8860034 AGGGTTACTT
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
17 4 0.10
18 33 0.82
19 3 0.08
ACGTcount: A:0.26, C:0.09, G:0.13, T:0.53
Consensus pattern (18 bp):
ATTTAGATTTCGATTTCA
Found at i:8860222 original size:64 final size:64
Alignment explanation
Indices: 8860150--8860349 Score: 355
Period size: 64 Copynumber: 3.1 Consensus size: 64
8860140 ATGTTTATTG
8860150 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
** *
8860214 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGCCATTG
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
* *
8860278 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTTATTT
1 TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
8860342 TTTGTATC
1 TTTGTATC
8860350 CAAGCACCTA
Statistics
Matches: 130, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 130 1.00
ACGTcount: A:0.24, C:0.14, G:0.16, T:0.47
Consensus pattern (64 bp):
TTTGTATCTGCCATTGTATGAATGCCATTATCAAACTGATGTTTATTGTGTATATCTGTAATTA
Found at i:8860677 original size:15 final size:15
Alignment explanation
Indices: 8860657--8860685 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8860647 GAAGAAAACA
8860657 TGTCTGGTAGTGATG
1 TGTCTGGTAGTGATG
8860672 TGTCTGGTAGTGAT
1 TGTCTGGTAGTGAT
8860686 AGTGATGCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.38, T:0.41
Consensus pattern (15 bp):
TGTCTGGTAGTGATG
Found at i:8862300 original size:17 final size:17
Alignment explanation
Indices: 8862273--8862312 Score: 71
Period size: 17 Copynumber: 2.3 Consensus size: 17
8862263 TAAGGTAAAG
8862273 ATTCTTTCTGATGCCTAT
1 ATTC-TTCTGATGCCTAT
8862291 ATTCTTCTGATGCCTAT
1 ATTCTTCTGATGCCTAT
8862308 ATTCT
1 ATTCT
8862313 AACTTCATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 18 0.82
18 4 0.18
ACGTcount: A:0.17, C:0.23, G:0.10, T:0.50
Consensus pattern (17 bp):
ATTCTTCTGATGCCTAT
Found at i:8862389 original size:40 final size:39
Alignment explanation
Indices: 8862352--8862451 Score: 155
Period size: 40 Copynumber: 2.5 Consensus size: 39
8862342 TAGTGAATGC
*
8862352 TTTTTAATATGCATGCATTGATTGTTGGTGTGTTGAATA
1 TTTTTAATATGCATGCAGTGATTGTTGGTGTGTTGAATA
**
8862391 TTTTTGAATATGCATGCAGTGATTGTTGGTGTGTTGCCTA
1 TTTTT-AATATGCATGCAGTGATTGTTGGTGTGTTGAATA
8862431 TTTTTTAATATGCATGCAGTG
1 -TTTTTAATATGCATGCAGTG
8862452 CGATCGCGTT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
39 5 0.09
40 46 0.82
41 5 0.09
ACGTcount: A:0.21, C:0.08, G:0.24, T:0.47
Consensus pattern (39 bp):
TTTTTAATATGCATGCAGTGATTGTTGGTGTGTTGAATA
Found at i:8864915 original size:17 final size:17
Alignment explanation
Indices: 8864890--8864924 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8864880 TTTAATTCAA
*
8864890 TATATATCAATCAAAAT
1 TATAAATCAATCAAAAT
*
8864907 TATAAATCAATTAAAAT
1 TATAAATCAATCAAAAT
8864924 T
1 T
8864925 TATCCTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.54, C:0.09, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAAATCAATCAAAAT
Found at i:8872418 original size:21 final size:21
Alignment explanation
Indices: 8872363--8872418 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
8872353 AAGTTGGTGT
*
8872363 CCCAACTCAGCAACAGGCTAC
1 CCCAACTCAGCAAGAGGCTAC
* * *
8872384 CCCAAATCGGCAAGAGGGTAC
1 CCCAACTCAGCAAGAGGCTAC
*
8872405 CCCAACTCAACAAG
1 CCCAACTCAGCAAG
8872419 CTGCCCTAAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.36, C:0.38, G:0.18, T:0.09
Consensus pattern (21 bp):
CCCAACTCAGCAAGAGGCTAC
Found at i:8873722 original size:15 final size:16
Alignment explanation
Indices: 8873696--8873729 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
8873686 ACTTCAGGCA
8873696 TCTCCATTTTTCCTCT
1 TCTCCATTTTTCCTCT
*
8873712 TCTCC-TTTTTCTTCT
1 TCTCCATTTTTCCTCT
8873727 TCT
1 TCT
8873730 TCTCTTCCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.03, C:0.35, G:0.00, T:0.62
Consensus pattern (16 bp):
TCTCCATTTTTCCTCT
Found at i:8877783 original size:39 final size:39
Alignment explanation
Indices: 8877740--8877818 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
8877730 ATTGAATGTG
*
8877740 AAGCACGTAGGTTTTGGGAGTTATTTCTTCTTATTCGTT
1 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
8877779 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
1 AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
8877818 A
1 A
8877819 TTATTGTTGG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.19, C:0.13, G:0.24, T:0.44
Consensus pattern (39 bp):
AAGCACGTAGGTGTTGGGAGTTATTTCTTCTTATTCGTT
Found at i:8884138 original size:26 final size:26
Alignment explanation
Indices: 8884102--8884152 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
8884092 CAAAAACACT
8884102 TTTATACATTTAAGGCACCTATATAA
1 TTTATACATTTAAGGCACCTATATAA
8884128 TTTATACATTTAAGGCACCTATATA
1 TTTATACATTTAAGGCACCTATATA
8884153 CATGCCACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.39
Consensus pattern (26 bp):
TTTATACATTTAAGGCACCTATATAA
Found at i:8886916 original size:31 final size:31
Alignment explanation
Indices: 8886876--8886934 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8886866 CATAAAAGAA
*
8886876 GATTTATAGATATGACAGACTCATACATACG
1 GATTCATAGATATGACAGACTCATACATACG
* *
8886907 GATTCATAGATATGGCAGACTTATACAT
1 GATTCATAGATATGACAGACTCATACAT
8886935 GCAAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (31 bp):
GATTCATAGATATGACAGACTCATACATACG
Found at i:8886956 original size:45 final size:45
Alignment explanation
Indices: 8886907--8887007 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
8886897 CATACATACG
* * * *
8886907 GATTCATAGATATGGCAGACTTATACATGCAAATTTTTAGAAGAA
1 GATTCATAGATATGACAGACTCATACATGCAAATTTATAAAAGAA
* * *
8886952 GATTCATAGATATGATATACTCATACATGCAGATTTATAAAAGAA
1 GATTCATAGATATGACAGACTCATACATGCAAATTTATAAAAGAA
* *
8886997 TATTTATAGAT
1 GATTCATAGAT
8887008 GTGAACTGTG
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.34
Consensus pattern (45 bp):
GATTCATAGATATGACAGACTCATACATGCAAATTTATAAAAGAA
Found at i:8886961 original size:76 final size:76
Alignment explanation
Indices: 8886831--8886979 Score: 192
Period size: 76 Copynumber: 2.0 Consensus size: 76
8886821 TGTAGAAGAA
* * *
8886831 GATTCATAGATATGTAGGAGTCATACAGGCAAATTCATAAAAGAAGATTTATAGATATGACAGAC
1 GATTCATAGATATGCAGGACTCATACAGGCAAATTCATAAAAGAAGATTCATAGATATGACAGAC
8886896 TCATACATACG
66 TCATACATACG
* * ** * * *
8886907 GATTCATAGATATGGCA-GACTTATACATGCAAATTTTTAGAAGAAGATTCATAGATATGATATA
1 GATTCATAGATAT-GCAGGACTCATACAGGCAAATTCATAAAAGAAGATTCATAGATATGACAGA
8886971 CTCATACAT
65 CTCATACAT
8886980 GCAGATTTAT
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
76 60 0.97
77 2 0.03
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.30
Consensus pattern (76 bp):
GATTCATAGATATGCAGGACTCATACAGGCAAATTCATAAAAGAAGATTCATAGATATGACAGAC
TCATACATACG
Found at i:8893904 original size:45 final size:45
Alignment explanation
Indices: 8893837--8894004 Score: 147
Period size: 45 Copynumber: 3.7 Consensus size: 45
8893827 ATGCGAACTC
* * * * * * *
8893837 ATACATTCAAAATCGTATAAGAAGATTCATAGATATGGCGGACTT
1 ATACATACAAATTCATAGAAGAAGATTCATAGATATGACGGAATA
** *
8893882 ATACATATGAATTCATAGAAGAAGCTTCATAGATATGACGGAATA
1 ATACATACAAATTCATAGAAGAAGATTCATAGATATGACGGAATA
* ** * ** *
8893927 ATACATGCAAATTCATAGAAGAAGATTCATAGCCATGAAGGGCTC
1 ATACATACAAATTCATAGAAGAAGATTCATAGATATGACGGAATA
* * *
8893972 ATACATGCAAATTTATAAAAAGAAGATTCATAG
1 ATACATACAAATTCAT-AGAAGAAGATTCATAG
8894005 TTGCGAATTG
Statistics
Matches: 100, Mismatches: 22, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
45 85 0.85
46 15 0.15
ACGTcount: A:0.43, C:0.13, G:0.17, T:0.26
Consensus pattern (45 bp):
ATACATACAAATTCATAGAAGAAGATTCATAGATATGACGGAATA
Found at i:8901762 original size:44 final size:43
Alignment explanation
Indices: 8901690--8901913 Score: 141
Period size: 44 Copynumber: 5.0 Consensus size: 43
8901680 TACCATCAGC
* *
8901690 CTTATCTCTCTAAGGTAGCAA-GAGAGCAGGTTGAAGATTGAAGT
1 CTTATCTC-CTGAGGTAGCAAGGA-AGCAGATTGAAGATTGAAGT
* * *
8901734 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGGAGGCAAAT
1 CTTATC-TCCTGAGGTAGCAAGGAAGCAGATTGAAGATT----G-AAGT
* * ** * *
8901783 CTTATCTCCATGTATCGGTA--ATGG-AGCAGATTTAAGCCTCAAGC
1 CTTATCTCC-TG-A--GGTAGCAAGGAAGCAGATTGAAGATTGAAGT
* * * * *
8901827 CTTATCTCTCTGAGGTAGCAAGAAAGCTGGTTCAATATTGAAGT
1 CTTATCTC-CTGAGGTAGCAAGGAAGCAGATTGAAGATTGAAGT
*
8901871 CTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAG
1 CTTATC-TCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGAAG
8901914 ATTGGAAGAG
Statistics
Matches: 135, Mismatches: 29, Indels: 32
0.69 0.15 0.16
Matches are distributed among these distances:
41 4 0.03
43 3 0.02
44 87 0.64
45 7 0.05
48 4 0.03
49 22 0.16
50 4 0.03
52 4 0.03
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (43 bp):
CTTATCTCCTGAGGTAGCAAGGAAGCAGATTGAAGATTGAAGT
Found at i:8901843 original size:137 final size:138
Alignment explanation
Indices: 8901658--8902057 Score: 556
Period size: 147 Copynumber: 2.9 Consensus size: 138
8901648 GATTTCAGTA
* * *
8901658 GTATCGACAATGAAGCAGATTTTA-CCATC-AGCCTTATCTCTCTAAGGTAGCAAGAGAGCAGGT
1 GTATCGACAATGGAGCAGATTTAAGCC-TCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGT
*
8901721 TGAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTG-GAGGCAAATCT
65 TAAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAGAGGCAAATCT
8901785 TATCTCCAT
130 TATCTCCAT
** * *
8901794 GTATCGGTAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAAAGCTGGTT
1 GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
8901859 CAATATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGATTGGAAGAG
66 AAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACT----A---AAGATT-G-AGAG
8901924 GCAAATCTTATCTCCAT
122 GCAAATCTTATCTCCAT
* *
8901941 GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTTTGAGGTAGTAAGAGAGCAGGTT
1 GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
* *
8902006 AAAGATTG-AGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGA
66 AAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGA
8902058 ATATCTTATC
Statistics
Matches: 233, Mismatches: 19, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
136 22 0.09
137 77 0.33
138 1 0.00
139 6 0.03
141 1 0.00
142 1 0.00
144 6 0.03
145 1 0.00
146 33 0.14
147 85 0.36
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (138 bp):
GTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTT
AAAGATTGAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTAAAGATTGAGAGGCAAATCTT
ATCTCCAT
Found at i:8902031 original size:43 final size:43
Alignment explanation
Indices: 8901974--8902057 Score: 116
Period size: 43 Copynumber: 2.0 Consensus size: 43
8901964 AGCCTCAAGC
* * **
8901974 CTTATCTCTTTGAGGTAGTAAGAGAGCAGGTTAAAGATTGAGT
1 CTTATCTCTTTGAGGTAGCAAGAAAGCAGACTAAAGATTGAGT
8902017 CTTATCT-TTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGA
1 CTTATCTCTT-TGAGGTAGCAAGAAAGCAGACTAAAGATTGA
8902058 ATATCTTATC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 34 0.94
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (43 bp):
CTTATCTCTTTGAGGTAGCAAGAAAGCAGACTAAAGATTGAGT
Found at i:8902287 original size:177 final size:177
Alignment explanation
Indices: 8901918--8902326 Score: 518
Period size: 177 Copynumber: 2.3 Consensus size: 177
8901908 TTGAAGATTG
* * *
8901918 GAAGA-GGCAAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCCTCAAGCCTTATCTC
1 GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTC
* * * * *
8901982 TTTGAGGTAGTAAGAGAGCAGGTTAAAGATTGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGA
66 TCTGAAGTAGCAAGAGAGCAGGTTAAAGATTGAGTCTTATCTTCCTGAGGTAGAAAGAAAGCAGA
* * *
8902047 CTAAAGATTGAATATCTTATCTCCCCTAAGCGGTAGTGGAGTAGATC
131 CTAAAGATTGAAGATCTTATCTCCCCTAAGCAGTAGTGGAGCAGATC
** * *
8902094 GAAGATGGTGAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTC
1 GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTC
*** * * *
8902159 TCTGAAGTAGCAAGAGAGCAGGTTGGCGATTTTAGTCTTATCTTCCTGAGGTAGAAAGGAAGTAG
66 TCTGAAGTAGCAAGAGAGCAGGTTAAAGA-TTGAGTCTTATCTTCCTGAGGTAGAAAGAAAGCAG
* * * * *
8902224 ACTGAAGATTGAAGATC-TAT-TTCCCTAAAGTAGTTGTGGAGCAGATT
130 ACTAAAGATTGAAGATCTTATCTCCCCT-AAGCAGTAGTGGAGCAGATC
* * *
8902271 GAGGATGGCAAATCTTATCTCCATGTATTGGCAATGGAGCAGATTTAAGTCACTAG
1 GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAG
8902327 TCCTATTTCC
Statistics
Matches: 197, Mismatches: 33, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
176 10 0.05
177 142 0.72
178 45 0.23
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (177 bp):
GAAGATGGCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTC
TCTGAAGTAGCAAGAGAGCAGGTTAAAGATTGAGTCTTATCTTCCTGAGGTAGAAAGAAAGCAGA
CTAAAGATTGAAGATCTTATCTCCCCTAAGCAGTAGTGGAGCAGATC
Found at i:8903876 original size:21 final size:22
Alignment explanation
Indices: 8903841--8903883 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8903831 TAAAGATTTC
* *
8903841 AAAATAATAATTTATTTAAACA
1 AAAATAATAAATTATTAAAACA
8903863 AAAATAA-AAATTATTAAAACA
1 AAAATAATAAATTATTAAAACA
8903884 GTTCTGACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (22 bp):
AAAATAATAAATTATTAAAACA
Found at i:8913134 original size:51 final size:51
Alignment explanation
Indices: 8913063--8913165 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
8913053 CTGATCACAT
8913063 TTATCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCAC
*
8913114 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCAC
1 TTATCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCAC
8913165 T
1 T
8913166 GGTCAGATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (51 bp):
TTATCACTTGTCACTGATCAGATAAGTGCAGCTAAAGCTACCACTTATCAC
Found at i:8913172 original size:37 final size:37
Alignment explanation
Indices: 8913118--8913207 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 37
8913108 TATCACTTAT
* * *
8913118 CACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTGGTCAGATAAGTATAGCTAAAGCTAC
* *
8913155 CACTTATCACTGGTCAGATAAGTATAGCTGAGGCTAC
1 CACTTATCACTGGTCAGATAAGTATAGCTAAAGCTAC
*
8913192 CACTTATCACTTGTCA
1 CACTTATCACTGGTCA
8913208 CTGATCAGAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (37 bp):
CACTTATCACTGGTCAGATAAGTATAGCTAAAGCTAC
Found at i:8916138 original size:43 final size:44
Alignment explanation
Indices: 8916067--8916151 Score: 102
Period size: 43 Copynumber: 2.0 Consensus size: 44
8916057 TGTTACACGA
*
8916067 CCTGGTGACACGACTATGTAACCTTA-TTTCGAA-TTGTACATAG
1 CCTGGTGACACGACTATGTAACCCTATTTTC-AATTTGTACATAG
* * **
8916110 CCTGGTGACACGATTGTGTGGCCCTATTTTCAATTTGTACAT
1 CCTGGTGACACGACTATGTAACCCTATTTTCAATTTGTACAT
8916152 GGTTTGGCCA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
43 23 0.66
44 12 0.34
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (44 bp):
CCTGGTGACACGACTATGTAACCCTATTTTCAATTTGTACATAG
Found at i:8918192 original size:12 final size:12
Alignment explanation
Indices: 8918175--8918200 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8918165 ATTTTTCTCA
8918175 AATAATTAAGCG
1 AATAATTAAGCG
8918187 AATAATTAAGCG
1 AATAATTAAGCG
8918199 AA
1 AA
8918201 ATCAAGTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.08, G:0.15, T:0.23
Consensus pattern (12 bp):
AATAATTAAGCG
Found at i:8921901 original size:46 final size:46
Alignment explanation
Indices: 8921849--8921995 Score: 267
Period size: 46 Copynumber: 3.2 Consensus size: 46
8921839 GCTTTTTGAA
*
8921849 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGAT
8921895 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGAT
*
8921941 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGAT
*
8921987 ATAAAATGT
1 ATGAAATGT
8921996 AACGCTCCGA
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 98 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.23
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGAT
Found at i:8923407 original size:19 final size:20
Alignment explanation
Indices: 8923362--8923407 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
8923352 ATATGTTTGT
*
8923362 TATGGGCCAACTGTATTGAA
1 TATGGCCCAACTGTATTGAA
*
8923382 -ATCGGCCCAACTGTGTT-AA
1 TAT-GGCCCAACTGTATTGAA
8923401 TATGGCC
1 TATGGCC
8923408 AAGGCCCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (20 bp):
TATGGCCCAACTGTATTGAA
Found at i:8923475 original size:60 final size:59
Alignment explanation
Indices: 8923400--8923536 Score: 143
Period size: 60 Copynumber: 2.3 Consensus size: 59
8923390 AACTGTGTTA
* * *
8923400 ATATGGCCAAGGCCCAATATA-TCTCGACT-TATAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATATAA-AGGGCTACGGCCCAGATTAATACTG
* * * *
8923460 ATATGGGCTAGGCCCAATATACTCTGATAATGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGAT-ATATAAAGGGCTACGGCCCAGATTAATACTG
*
8923520 ACATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
8923537 GTTAACACTG
Statistics
Matches: 65, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
59 1 0.02
60 50 0.77
61 14 0.22
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATATAAAGGGCTACGGCCCAGATTAATACTG
Found at i:8924328 original size:46 final size:46
Alignment explanation
Indices: 8924269--8924388 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 46
8924259 TAAAATGTGT
**
8924269 AAGACCATGGTTGAAAGATACCATGGCAATGTAACATG-AAATGAAC
1 AAGACCATGGTTGAAAGATACCATGGCAACCTAACA-GAAAATGAAC
* * **
8924315 AAGACCATGGTTGAAAGATACCATAGCAACCTGACAGAAAATGAGT
1 AAGACCATGGTTGAAAGATACCATGGCAACCTAACAGAAAATGAAC
* * *
8924361 AAGACCATAGTTGAAAGACACTATGGCA
1 AAGACCATGGTTGAAAGATACCATGGCA
8924389 TCATGTCAAA
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
45 1 0.02
46 62 0.98
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.18
Consensus pattern (46 bp):
AAGACCATGGTTGAAAGATACCATGGCAACCTAACAGAAAATGAAC
Found at i:8926393 original size:14 final size:14
Alignment explanation
Indices: 8926374--8926401 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8926364 AAATTGTACA
8926374 AAAATTTATATGCT
1 AAAATTTATATGCT
8926388 AAAATTTATATGCT
1 AAAATTTATATGCT
8926402 TAGACTCCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
AAAATTTATATGCT
Found at i:8926912 original size:47 final size:46
Alignment explanation
Indices: 8926820--8927525 Score: 1025
Period size: 47 Copynumber: 15.2 Consensus size: 46
8926810 TATGAAATGA
8926820 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8926867 TGATAAGGCCTAATAGCGCCGATGTGATGAATGTGAAAGTGTATATGTG
1 TGATAAGGCCTAAT-G-GCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8926916 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8926963 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8927010 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
* *
8927057 TGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8927104 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8927151 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
8927198 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8927245 TAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
8927292 TGATAAGGCC---T-----ATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
8927331 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*
8927378 TAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
8927425 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATG
*** * * * * *
8927472 TGACGGGGCCGAGTGGCCAACGTGAT-AGATGTGAAAGTGCATAAATG
1 TGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAAGTG-ATATATG
8927519 TGATAAG
1 TGATAAG
8927526 TCCTGAAGGG
Statistics
Matches: 618, Mismatches: 30, Indels: 22
0.92 0.04 0.03
Matches are distributed among these distances:
39 38 0.06
42 1 0.00
44 1 0.00
46 1 0.00
47 530 0.86
48 2 0.00
49 45 0.07
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (46 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATG
Found at i:8927022 original size:94 final size:94
Alignment explanation
Indices: 8926820--8927525 Score: 1151
Period size: 94 Copynumber: 7.6 Consensus size: 94
8926810 TATGAAATGA
8926820 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATA--G
*
8926885 CCGATGTGATGAATGTGAAAGTGTATATGTG
64 CCGATGTGATGAATGTGAAAGTGTATATATG
*
8926916 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
8926981 GATGTGATGAATGTGAAAGTGTATATATG
66 GATGTGATGAATGTGAAAGTGTATATATG
*
8927010 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
*
8927075 AATGTGATGAATGTGAAAGTGTATATATG
66 GATGTGATGAATGTGAAAGTGTATATATG
*
8927104 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
8927169 GATGTGATGAATGTGAAAGTGTATATATG
66 GATGTGATGAATGTGAAAGTGTATATATG
* *
8927198 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
8927263 GATGTGATGAATGTGAAAGTGTATATATG
66 GATGTGATGAATGTGAAAGTGTATATATG
*
8927292 TGATAAGGCC---T-----ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
8927349 GATGTGATGAATGTGAAAGTGTATATATG
66 GATGTGATGAATGTGAAAGTGTATATATG
* *
8927378 TAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
8927443 GATGTGATGAATGTGAAAGTGTATATATG
66 GATGTGATGAATGTGAAAGTGTATATATG
*** * * * * * *
8927472 TGACGGGGCCGAGTGGCCAACGTGAT-AGATGTGAAAGTGCATAAATGTGATAAG
1 TGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAAAGTGTATATATGTGATAAG
8927526 TCCTGAAGGG
Statistics
Matches: 582, Mismatches: 19, Indels: 20
0.94 0.03 0.03
Matches are distributed among these distances:
86 83 0.14
89 1 0.00
91 1 0.00
93 1 0.00
94 435 0.75
96 61 0.10
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCC
GATGTGATGAATGTGAAAGTGTATATATG
Found at i:8927084 original size:141 final size:141
Alignment explanation
Indices: 8926820--8927525 Score: 1151
Period size: 141 Copynumber: 5.0 Consensus size: 141
8926810 TATGAAATGA
8926820 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCG
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-G-G
*
8926885 CCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
64 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
8926950 AAGTGTATATGTG
129 AAGTGTATATATG
*
8926963 TGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
* * *
8927028 GATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
8927093 GTGTATATATG
131 GTGTATATATG
* *
8927104 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
8927169 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
8927234 GTGTATATATG
131 GTGTATATATG
*
8927245 TAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC---T----
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
8927303 -ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
8927367 GTGTATATATG
131 GTGTATATATG
*
8927378 TAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
1 TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
*** * * * *
8927443 GATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCGAGTGGCCAACGTGAT-AGATGTGAA
66 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA-ATGTGAA
* *
8927507 AGTGCATAAATG
130 AGTGTATATATG
8927519 TGATAAG
1 TGATAAG
8927526 TCCTGAAGGG
Statistics
Matches: 532, Mismatches: 22, Indels: 20
0.93 0.04 0.03
Matches are distributed among these distances:
133 132 0.25
136 1 0.00
138 1 0.00
140 1 0.00
141 336 0.63
142 1 0.00
143 60 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (141 bp):
TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCC
GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
GTGTATATATG
Found at i:8927327 original size:86 final size:86
Alignment explanation
Indices: 8927212--8927474 Score: 427
Period size: 86 Copynumber: 3.0 Consensus size: 86
8927202 AAGGCCTAAT
* *
8927212 GGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
8927277 GAAAGTGTATATATGTGATAA
66 GAAAGTGTATATATGTGATAA
8927298 GGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
8927363 GAAAGTGTATATATGTAATAA
66 GAAAGTGTATATATGTGATAA
8927384 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCC---T-----ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
8927449 ATGAATGTGAAAGTGTATATATGTGA
58 ATGAATGTGAAAGTGTATATATGTGA
8927475 CGGGGCCGAG
Statistics
Matches: 165, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
86 87 0.53
89 1 0.01
94 77 0.47
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (86 bp):
GGCCTATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATATGTGATAA
Done.