Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 41 of 259
Found at i:12417438 original size:120 final size:120
Alignment explanation
Indices: 12417221--12417576 Score: 491
Period size: 120 Copynumber: 3.0 Consensus size: 120
12417211 TCGAATGATG
* * * * *
12417221 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGTTCCGAAGAGCA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGTCCCGAAGAGCA
*
12417284 TTCATGCTAGTGATGTATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
64 TTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* *
12417341 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGTTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * *
12417406 CAAGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTTATGCTAGTGATGTA
66 CATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
* **
12417461 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * * * * * *
12417526 CGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
66 CATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
12417577 CGTGTATTCG
Statistics
Matches: 208, Mismatches: 26, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
120 194 0.93
121 7 0.03
122 7 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
Found at i:12418929 original size:56 final size:56
Alignment explanation
Indices: 12418843--12418962 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
12418833 ACAAGGGATG
*
12418843 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
*
12418899 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAAAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
12418955 ATGGGCAA
1 ATGGGCAA
12418963 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAAAAGC
Found at i:12420464 original size:47 final size:47
Alignment explanation
Indices: 12420421--12420908 Score: 707
Period size: 47 Copynumber: 10.3 Consensus size: 47
12420411 ATGTGAAAGA
* *
12420421 GTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA-AGT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-T
*
12420468 GTATATATGTGATAAGGCCTAATGGCCGAA-GTGATGAATGTGAA-AGT
1 GTATATATGTGATAAGGCCGAATGGCC-AATGTGATGAATGTGAACA-T
*
12420515 GTATATATGTGATAAGGCCGAGTGGCCAATGTGATGAATGTGAA-AGT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-T
*
12420562 GTATATATATATGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 G--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* *
12420611 GTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* * *
12420658 GCATATATGAGATAAGGCCGAGTGGCCAATGTGATGAATGTGAACAT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* *
12420705 GTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* *
12420752 GTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* *
12420799 GTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
* * *
12420846 GCATATATGAGATAAGGCCGAAAGGCCAATGTGATGAATGTGAA-AGT
1 GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-T
12420893 GTATATATGTGATAAG
1 GTATATATGTGATAAG
12420909 TCCCGAAGGG
Statistics
Matches: 410, Mismatches: 25, Indels: 12
0.92 0.06 0.03
Matches are distributed among these distances:
46 3 0.01
47 362 0.88
48 1 0.00
49 43 0.10
50 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.27
Consensus pattern (47 bp):
GTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACAT
Found at i:12422936 original size:35 final size:35
Alignment explanation
Indices: 12422892--12422961 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
12422882 TCTCTGGAGT
* *
12422892 TTGGCAAATATGGAAAGTAATCTTCAAAGATATGC
1 TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
* *
12422927 TTGGAAAATATGGAAGGGGATCTTCAAAGATATGC
1 TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
12422962 GATCCTAGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (35 bp):
TTGGAAAATATGGAAAGGAATCTTCAAAGATATGC
Found at i:12429258 original size:85 final size:85
Alignment explanation
Indices: 12429164--12429539 Score: 224
Period size: 85 Copynumber: 4.4 Consensus size: 85
12429154 GGTTTCCTAC
* * * *
12429164 GGTGACCGAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTG-CTCGAGGGTTCCGTAC
1 GGTGCCCGAGGCTCCCACACGA-CCAAGCACCAAGGTTGCCAATGCTGTCT-GAGGCTACCGCAC
* *
12429226 ATCCGAGGCACCAAGGTGCCAAT
64 ATCC-AAGCACCAAGATGCCAAT
* * ** * * *
12429249 GGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTACCGCACAT
1 GGTGCCCGAGGCTCCCACACGACCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACAT
*
12429314 CCAAGCACCAAGATGCCGAT
66 CCAAGCACCAAGATGCCAAT
* * ** * * * * * *
12429334 GGTGCCCGAGGCTCTCGCACGATGAAG-GCCTAGGTTACCGATGGTG-CTCGAGGCTCCCGCACG
1 GGTGCCCGAGGCTCCCACACGACCAAGCACCAAGGTTGCCAATGCTGTCT-GAGGCTACCGCAC-
* ** * * * *
12429397 A-CCAGGGGCCTAGGTTACCGAT
64 ATCCAAGCACC-AAGATGCCAAT
** * * * * ** *
12429419 GGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCCCGCACAT
1 GGTGCCCGAGGCTCCCACACGACCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACAT
* * * *
12429484 CTAACCACCAAGGTGCCGAT
66 CCAAGCACCAAGATGCCAAT
* * * *
12429504 GGTGCCCGAGGCTCCCGCAGGACCAAGGACCTAGGT
1 GGTGCCCGAGGCTCCCACACGACCAAGCACCAAGGT
12429540 GCCGGTGGTC
Statistics
Matches: 241, Mismatches: 41, Indels: 18
0.80 0.14 0.06
Matches are distributed among these distances:
83 2 0.01
84 36 0.15
85 141 0.59
86 59 0.24
87 3 0.01
ACGTcount: A:0.21, C:0.33, G:0.30, T:0.16
Consensus pattern (85 bp):
GGTGCCCGAGGCTCCCACACGACCAAGCACCAAGGTTGCCAATGCTGTCTGAGGCTACCGCACAT
CCAAGCACCAAGATGCCAAT
Found at i:12429295 original size:43 final size:43
Alignment explanation
Indices: 12429242--12430695 Score: 1219
Period size: 43 Copynumber: 34.2 Consensus size: 43
12429232 GGCACCAAGG
* *
12429242 TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
12429285 TGCCGATGGTGTCTGAGGCTACCGCAC-ATCCAAGCACC-AAGA
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* **
12429327 TGCCGATGGTGCCCGAGGCTCTCGCACGATGAA-GGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
12429369 TACCGATGGTGCTCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
12429412 TACCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *** *
12429455 TACCGATGGTGTCCAAGGCTCCCGCAC-ATCTAACCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
12429497 TGCCGATGGTGCCCGAGGCTCCCGCAGGACCAAGGACCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
12429539 TGCCGGTGGT-CCCAAGGCTTTCACACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * *
12429581 TGTCGATGGTGCCCGAGGCTCCCGTATGACC-AGAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGT
* * *
12429624 TGCCGATGGTGCCCAAGGCTCCCGCATGACCAAGGGCCTATGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* ** *
12429667 TGCCGATGGTGCCCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* *
12429709 TGCCGATGGTGCCCGAGGCTCCCGCATGACTAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
12429752 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
12429795 TGCAGATGGTGCCCGAGGCTCCCGTAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * * * ** *
12429837 TACCGATAGTGCCCGAGGCTCCTGCAC-ATTCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
* * *
12429879 TGCCAATGGTGCCTGAGGCTCCCGTACGACCAAGGGCCTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
12429921 TGCCGATGGTGCCCGAGACTCCCGTACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
**
12429964 TGCCGATGGT-CCCGAGGCTTTCGCACGACCAAGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* *
12430006 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * * *
12430049 TGTCGATGGTGCCCAAGGCTCCTGTAGGACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
12430092 TGCCAATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
12430135 TGCCGATGGTGCCCGAGGCTCCCGCACAACTAGGGGCTTAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
12430177 TGCTGATGGTGCCTGAGGCTCCCGTACGACCAACGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * *
12430220 TGTCGATTGT-CCCGAGGCTCTCGCACGACCAAGGGCCAAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * * *
12430262 TACTGATGGTACCCGAGGCTCCCACACGACC-AGGGTCCCAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGG-CCTAGGT
* * *
12430305 TGCCGATGGTACCCGAGGCTCCTAG-ACGACCAAAGG-CTAGGT
1 TGCCGATGGTGCCCGAGGCTCC-CGCACGACCAAGGGCCTAGGT
** * * *
12430347 TGCCGATGGTGGTCGAGGCTCCCGTACCACCAAAGGCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * ** *
12430390 TGCCGATGGCG-CCGAGGCTCTCC-CAC-ATCTAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTC-CCGCACGA-CCAAGGGCCTAGGT
* * ** *
12430431 TGCCGGTGGTGCTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
** * * * *
12430473 TGTTGATGGTGCCCGAGGCTCCCACACAACCAATGGCCTAGTT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
* * * ** * *
12430516 TACCGATGGTGTCCGAGGCTCTCGCAC-ATCTGAGGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGG-GCCTAGGT
* * * * *
12430559 TGCCGATGCTGCTCGAGGCTCCCGCAC-ATCCGA-GGCATCAAGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGT
* * * * ** *
12430602 TGCCGATGCTGCTCGAGGCTTCCGCAC-ATCCGAGCACCAAGG-
1 TGCCGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGT
** * * * * * *
12430644 TGCCGATACTGCTCGAAGCTCTCGCACCACCAACGTCCTAGGT
1 TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
12430687 TGCCGATGG
1 TGCCGATGG
12430696 CGTCCAAGGC
Statistics
Matches: 1149, Mismatches: 225, Indels: 74
0.79 0.16 0.05
Matches are distributed among these distances:
41 41 0.04
42 500 0.44
43 598 0.52
44 10 0.01
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.17
Consensus pattern (43 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGT
Found at i:12429767 original size:85 final size:85
Alignment explanation
Indices: 12429242--12430695 Score: 1116
Period size: 85 Copynumber: 17.1 Consensus size: 85
12429232 GGCACCAAGG
* * * * * *
12429242 TGCCAATGGTGCCCGAGGCTCTCGCACGACCAAGGGCCTAGGTTGCCGATGGTGTCTGAGGCTAC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
** * *
12429307 CGCAC-ATCCAAGCACC-AAGA
65 CGCACGA-CCAAGGGCCTAGGT
* ** * *
12429327 TGCCGATGGTGCCCGAGGCTCTCGCACGATGAAG-GCCTAGGTTACCGATGGTGCTCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
12429391 CGCACGACCAGGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * * * *
12429412 TACCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTACCGATGGTGTCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *** *
12429477 CGCAC-ATCTAACCACCAAGG-
65 CGCACGA-CCAAGGGCCTAGGT
* * * *
12429497 TGCCGATGGTGCCCGAGGCTCCCGCAGGACCAAG-GACCTAGG-TGCCGGTGGT-CCCAAGGCTT
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACCAAGCG-CCTAGGTTGCCGATGGTGCCCGAGGCTC
* *
12429559 TCACACGACCAAGGGCCTAGGT
64 CCGCACGACCAAGGGCCTAGGT
* * * *
12429581 TGTCGATGGTGCCCGAGGCTCCCGTATGACCAGAG-GCCTAGGTTGCCGATGGTGCCCAAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACCA-AGCGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* *
12429645 CCGCATGACCAAGGGCCTATGT
64 CCGCACGACCAAGGGCCTAGGT
* * *
12429667 TGCCGATGGTGCCCGAGGCTCCCGTACATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* *
12429731 CGCATGACTAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * *
12429752 TGCCGATGGTGCCCGAGGCTCCCGCACGACTAGGGGCCTAGGTTGCAGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* ** *
12429817 CGTAC-ATCCAAGCACCAAGG-
65 CGCACGA-CCAAGGGCCTAGGT
* * * * * * * *
12429837 TACCGATAGTGCCCGAGGCTCCTGCACATTCAAGCACCAAGG-TGCCAATGGTGCCTGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
*
12429901 CGTACGACCAAGGGCCTAGG-
65 CGCACGACCAAGGGCCTAGGT
* * * **
12429921 TGCCGATGGTGCCCGAGACTCCCGTACGACCAAGGGCCTAGGTTGCCGATGGT-CCCGAGGCTTT
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
12429985 CGCACGACCAAGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * * *
12430006 TACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGGCCTAGGTTGTCGATGGTGCCCAAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * *
12430071 TGTAGGACCAGGGGCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
* * * * *
12430092 TGCCAATGGTGCCCGAGGCTCTCGTACAACCAGGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * *
12430157 CGCACAACTAGGGGCTTAGG-
65 CGCACGACCAAGGGCCTAGGT
* * * * *
12430177 TGCTGATGGTGCCTGAGGCTCCCGTACGACCAA-CGGCCTAGGTTGTCGATTGT-CCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGC-GCCTAGGTTGCCGATGGTGCCCGAGGCTC
* *
12430240 TCGCACGACCAAGGGCCAAGGT
64 CCGCACGACCAAGGGCCTAGGT
* * * * * * *
12430262 TACTGATGGTACCCGAGGCTCCCACACGACC-AGGGTCCCAGGTTGCCGATGGTACCCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCAC-ACCAAGCG-CCTAGGTTGCCGATGGTGCCCGAGGCTC
* *
12430326 CTAG-ACGACCAAAGG-CTAGGT
64 C-CGCACGACCAAGGGCCTAGGT
** * *
12430347 TGCCGATGGTGGTCGAGGCTCCCGTACCACCAAAG-GCCTAGGTTGCCGATGGCG-CCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCA-CACC-AAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* ** *
12430410 TCC-CAC-ATCTAAGCACCAAGG-
64 -CCGCACGA-CCAAGGGCCTAGGT
* * * * **
12430431 TGCCGGTGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGG-TGTTGATGGTGCCCGAGGCTCC
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * * *
12430495 CACACAACCAATGGCCTAGTT
65 CGCACGACCAAGGGCCTAGGT
* * * * * * * * *
12430516 TACCGATGGTGTCCGAGGCTCTCGCACATCTGAGGCACCAAGG-TGCCGATGCTGCTCGAGGCTC
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-C-CAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTC
* * *
12430580 CCGCAC-ATCCGA-GGCATCAAGT
64 CCGCACGA-CCAAGGGCCT-AGGT
* * * * * * ** * * *
12430602 TGCCGATGCTGCTCGAGGCTTCCGCACATCCGAGCACCAAGG-TGCCGATACTGCTCGAAGCTCT
1 TGCCGATGGTGCCCGAGGCTCCCGCACA-CCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCC
* * *
12430666 CGCACCACCAACGTCCTAGGT
65 CGCACGACCAAGGGCCTAGGT
12430687 TGCCGATGG
1 TGCCGATGG
12430696 CGTCCAAGGC
Statistics
Matches: 1108, Mismatches: 215, Indels: 92
0.78 0.15 0.07
Matches are distributed among these distances:
83 36 0.03
84 264 0.24
85 488 0.44
86 317 0.29
87 3 0.00
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.17
Consensus pattern (85 bp):
TGCCGATGGTGCCCGAGGCTCCCGCACACCAAGCGCCTAGGTTGCCGATGGTGCCCGAGGCTCCC
GCACGACCAAGGGCCTAGGT
Found at i:12430706 original size:85 final size:84
Alignment explanation
Indices: 12430444--12430738 Score: 249
Period size: 85 Copynumber: 3.5 Consensus size: 84
12430434 CGGTGGTGCT
* * ** * * * *
12430444 CGAGGCTCCCGCACATCCAAGCACCAAGGTGTTGATGGTGCCCGAGGCTCCCACACAACCAATGG
1 CGAGGCTTCCGCACATCCGAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACCACCAA-GG
* * *
12430509 CCTAGTTTACCGATGGTGTC
65 CCTAGGTTGCCGATGGCGTC
* *
12430529 CGAGGC-TCTCGCACATCTGAGGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCA-CATCCGA
1 CGAGGCTTC-CGCACATCCGA-GCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACCA-CCAA
* *
12430592 GGCATCAAGTTGCCGAT-GC-TGC
63 GGCCT-AGGTTGCCGATGGCGT-C
* * *
12430614 TCGAGGCTTCCGCACATCCGAGCACCAAGGTGCCGATACTGCTCGAAGCTCTCGCACCACCAACG
1 -CGAGGCTTCCGCACATCCGAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACCACCAA-G
*
12430679 TCCTAGGTTGCCGATGGCGTC
64 GCCTAGGTTGCCGATGGCGTC
* * * * * *
12430700 CAAGGC-TCCAGTACGTCCAAGCAGCAATGTGCCGATGCT
1 CGAGGCTTCC-GCACATCCGAGCACCAAGGTGCCGATGCT
12430739 CCAGCACCAT
Statistics
Matches: 168, Mismatches: 30, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
84 5 0.03
85 95 0.57
86 65 0.39
87 3 0.02
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (84 bp):
CGAGGCTTCCGCACATCCGAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACCACCAAGGC
CTAGGTTGCCGATGGCGTC
Found at i:12430912 original size:24 final size:24
Alignment explanation
Indices: 12430885--12430946 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
12430875 TGGCTTACCA
*
12430885 GAGCACCACCGGGATGGCTT-GCAG
1 GAGCACCACCGGGATAG-TTCGCAG
* *
12430909 GAGCA-CAGTCGGGATAGTTCGCCG
1 GAGCACCA-CCGGGATAGTTCGCAG
12430933 GAGCACCACCGGGA
1 GAGCACCACCGGGA
12430947 ACTTAACCAG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
23 4 0.13
24 25 0.81
25 2 0.06
ACGTcount: A:0.23, C:0.29, G:0.37, T:0.11
Consensus pattern (24 bp):
GAGCACCACCGGGATAGTTCGCAG
Found at i:12438259 original size:32 final size:32
Alignment explanation
Indices: 12438218--12438294 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
12438208 CAAAATAAAT
** *
12438218 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
**
12438250 TATGAAAAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
12438282 GATGAAAAGTTAC
1 TATGAAAAGTTAC
12438295 ACACATGCAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.45, C:0.06, G:0.23, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:12442770 original size:32 final size:32
Alignment explanation
Indices: 12442727--12442803 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
12442717 CAAAATAAAT
** *
12442727 TATGAAAAGTTACGAATGTGAAGAGGCTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
* **
12442759 TATGAAGAGTTAATAATGCAAAGAGACTTGAA
1 TATGAAAAGTTACGAATGCAAAGAGACTTGAA
*
12442791 GATGAAAAGTTAC
1 TATGAAAAGTTAC
12442804 ACACATGCAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.44, C:0.06, G:0.25, T:0.25
Consensus pattern (32 bp):
TATGAAAAGTTACGAATGCAAAGAGACTTGAA
Found at i:12446693 original size:58 final size:59
Alignment explanation
Indices: 12446602--12446722 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
12446592 GGGAGGGACA
* *
12446602 GGGACGATTCATTCATTGTTGGGTACCGGACATGCAACGGTATCCGAATTCTACC-TTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
* * *
12446660 GGGACGATTCATTCATTATTGGGTACCGAACATGTAATGGTATCTGAATTCTACCTTTT
1 GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
12446719 GGGA
1 GGGA
12446723 TTGGGGAGGG
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 50 0.88
59 7 0.12
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (59 bp):
GGGACGATTCATTCATTATTGGGTACCGAACATGCAACGGTATCCGAATTCTACCTTTT
Found at i:12447404 original size:5 final size:5
Alignment explanation
Indices: 12447396--12447426 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
12447386 GTATGGTATG
*
12447396 ATGGC ATGGC ATGGC ATGGC ACGGC ATGGC A
1 ATGGC ATGGC ATGGC ATGGC ATGGC ATGGC A
12447427 GAAAATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.23, C:0.23, G:0.39, T:0.16
Consensus pattern (5 bp):
ATGGC
Found at i:12458394 original size:43 final size:42
Alignment explanation
Indices: 12458310--12458512 Score: 124
Period size: 43 Copynumber: 4.8 Consensus size: 42
12458300 TACGGTGTCT
12458310 GAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTC
1 GAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTC
** * **
12458352 GAGGCTCCCGTACATCCGAGGCACCAAGGTGCTGATAG-TGCTC
1 GAGGCTCCCACACATCC-AAGCACCAAGGTGCCAAT-GCTGCTC
* ** * * ** * *
12458395 GAGGCTCCCAGACGA-CCAAGGGCCTAGGTTACTGATGGTGCCC
1 GAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTC
* ** * * * * *
12458438 GAGGCTCCCAGACGA-CCAAGGGCCTAGGTTGTCGATGGTGTTC
1 GAGGCTCCCACAC-ATCCAAGCACCAAGG-TGCCAATGCTGCTC
*
12458481 GAGGCTCCCGCACATCCAAGCACCAAGGTGCC
1 GAGGCTCCCACACATCCAAGCACCAAGGTGCC
12458513 GATGGCACCC
Statistics
Matches: 131, Mismatches: 24, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
42 27 0.21
43 102 0.78
44 2 0.02
ACGTcount: A:0.22, C:0.33, G:0.29, T:0.16
Consensus pattern (42 bp):
GAGGCTCCCACACATCCAAGCACCAAGGTGCCAATGCTGCTC
Found at i:12458612 original size:43 final size:43
Alignment explanation
Indices: 12458389--12459204 Score: 662
Period size: 43 Copynumber: 19.2 Consensus size: 43
12458379 GGTGCTGATA
* * *
12458389 GTGCTCGAGGCTCCCAG-ACGACCAAGGGCCTAGGTTACTGATG
1 GTGCCCGAGGCTCCC-GCACGACCAAGGGCCTAGGTTGCCGATG
*
12458432 GTGCCCGAGGCTCCCAG-ACGACCAAGGGCCTAGGTTGTCGATG
1 GTGCCCGAGGCTCCC-GCACGACCAAGGGCCTAGGTTGCCGATG
** ** *
12458475 GTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATG
1 GTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATG
** * * * *
12458517 GCACCCGAGGCTCTCGCACGACCAA-TGACTAGGTTACCGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
** * * *
12458559 GTGCTTGAGGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATT
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* *
12458602 GTGCCCGAGGCTCCCACACGACCAAGGGCCTAGG-TGCCGATC
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * * * *
12458644 GT-CTCGAGGCTCTCGCACGACGAAGGACCTAGGTTTCCGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * * * * *
12458686 GTGGCTGAGGCTCCCGTACGACC-AGAGACCTAGGTTACTGATG
1 GTGCCCGAGGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATG
* * * *
12458729 GTGCCTGAGGCT-CCGCATGACCAGGGGCCTAGGTTGTCGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* ** ** *
12458771 GTGCCTGAGGCTCCCATAC-ATCCAAGCACCAAGG-TGCCGATG
1 GTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATG
* * * * *
12458813 GTACCCGAGGCTCCCACAGGACCAAAGGCCTAGGTTGTCGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
** * **
12458856 GTGTTCAAGGCTCCCGCAC-ATCCAA-GTACTAAGG-TGCCGATG
1 GTGCCCGAGGCTCCCGCACGA-CCAAGGGCCT-AGGTTGCCGATG
* * *
12458898 GTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCTGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * * * * * * **
12458941 ATGCTCGAGGCTACCACACGACTAGGGGCCTAAGTTTTCGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * ** * *
12458984 GTGCCCGAGGCTCCCACAC-ATCTAAGCACCAAGG-TGCCAATG
1 GTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATG
* * * * *
12459026 GTGCTCGAGGCTCCCGCACAACCAACGGCCTAGGTTACCGACG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
*
12459069 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* * * *
12459112 GT-CCCGAGGCTCTCGTACGACCAAGGGCCTAGGTTACTGATG
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
* *
12459154 GTGCCC-ATGGCTCCCGTACGACC-AGTGGCCTAGGTTCCCGATG
1 GTGCCCGA-GGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATG
12459197 GTGCCCGA
1 GTGCCCGA
12459205 TGTAATATCC
Statistics
Matches: 613, Mismatches: 135, Indels: 49
0.77 0.17 0.06
Matches are distributed among these distances:
41 30 0.05
42 241 0.39
43 341 0.56
44 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (43 bp):
GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATG
Found at i:12458781 original size:85 final size:86
Alignment explanation
Indices: 12458389--12459201 Score: 610
Period size: 85 Copynumber: 9.6 Consensus size: 86
12458379 GGTGCTGATA
* * * *
12458389 GTGCTCGAGGCTCCCAG-ACGACCAAGGGCCTAGGTTACTGATGGTGCCCGAGGCTCCCAG-ACG
1 GTGCCCGAGGCTCCC-GCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCC-GCACG
* **
12458452 ACCAAGGGCCTAGGTTGTCGATG
64 ACCAAGGACCTAGGTTACCGATG
** ** * ** * *
12458475 GTGTTCGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGCACCCGAGGCTCTCGCACGA
1 GTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGA
*
12458538 CCAATGA-CTAGGTTACCGATG
65 CCAAGGACCTAGGTTACCGATG
** * * * * *
12458559 GTGCTTGAGGCTCCCGCATGACCAGGGGCCTAGGTTGCCGATTGTGCCCGAGGCTCCCACACGAC
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGAC
* * *
12458624 CAAGGGCCTAGG-TGCCGATC
66 CAAGGACCTAGGTTACCGATG
* * * * * * *
12458644 GT-CTCGAGGCTCTCGCACGACGAAGGACCTAGGTTTCCGATGGTGGCTGAGGCTCCCGTACGAC
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGAC
*
12458708 C-AGAGACCTAGGTTACTGATG
66 CAAG-GACCTAGGTTACCGATG
* * * * **
12458729 GTGCCTGAGGCT-CCGCATGACCAGGGGCCTAGGTTGTCGATGGTGCCTGAGGCTCCCATAC-AT
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGA-
* * *
12458792 CCAAGCACCAAGG-TGCCGATG
65 CCAAGGACCTAGGTTACCGATG
* * * * * * *
12458813 GTACCCGAGGCTCCCACAGGACCAAAGGCCTAGGTTGTCGATGGTG-TTCAAGGCTCCCGCAC-A
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCT-GAGGCTCCCGCACGA
* *
12458876 TCCAAGTA-CTAAGG-TGCCGATG
65 -CCAAGGACCT-AGGTTACCGATG
* * * * * *
12458898 GTGCCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCTGATGATG-CTCGAGGCTACCACACGA
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCT-GAGGCTCCCGCACGA
* * * * **
12458962 CTAGGGGCCTAAGTTTTCGATG
65 CCAAGGACCTAGGTTACCGATG
* * ** * * *
12458984 GTGCCCGAGGCTCCCACAC-ATCTAAGCACCAAGG-TGCCAATGGTG-CTCGAGGCTCCCGCACA
1 GTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGCCGATGGTGCCT-GAGGCTCCCGCACG
*
12459046 ACCAACGG-CCTAGGTTACCGACG
64 ACCAA-GGACCTAGGTTACCGATG
* * * *
12459069 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGT-CCCGAGGCTCTCGTACGAC
1 GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGAC
* *
12459133 CAAGGGCCTAGGTTACTGATG
66 CAAGGACCTAGGTTACCGATG
* *
12459154 GTGCCC-ATGGCTCCCGTACGACC-AGTGGCCTAGGTTCCCGATGGTGCC
1 GTGCCCGA-GGCTCCCGCACGACCAAG-GGCCTAGGTTGCCGATGGTGCC
12459202 CGATGTAATA
Statistics
Matches: 575, Mismatches: 126, Indels: 52
0.76 0.17 0.07
Matches are distributed among these distances:
83 2 0.00
84 120 0.21
85 365 0.63
86 88 0.15
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (86 bp):
GTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCTGAGGCTCCCGCACGAC
CAAGGACCTAGGTTACCGATG
Found at i:12459013 original size:213 final size:212
Alignment explanation
Indices: 12458351--12459204 Score: 681
Period size: 213 Copynumber: 4.0 Consensus size: 212
12458341 CAATGCTGCT
** * * * * * *
12458351 CGAGGCTCCCGTACATCCGAGGCACCAAGGTGCTGATAGTGCTCGAGGCTCCCAGACGACCAAGG
1 CGAGGCTCCCACACATCC-AAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAG
* * * * ** **
12458416 GCCTAGGTTACTGATGGTGCCCGAGGCTCCCAG-ACGACCAAGGGCCTAGGTTGTCGATGGTGTT
65 GCCTAGGTTGCCGATGGTGCTCGAGGCTCCC-GCACGACCAA-GGACTAGGTTACCGATGGTGCC
* * * ** * * * *** * * *
12458480 CGAGGCTCCCGCAC-ATCCAAGCACCAAGG-TGCCGATGGCACCCGAGGCTCTCGCACGACCA-A
128 CGAGGCTCTCGTACGA-CCAGGGGCCTAGGTTACTGATGATGCCTGAGGCTC-CACACGACCAGG
* * * ** *
12458542 TGACTAGGTTACCGATGGTGCT
191 GGCCTAAGTTGTCGATGGTGCC
* * * * ** * * *
12458564 TGAGGCTCCCGCATGA-CCAGGGGCCTAGGTTGCCGATTGTGCCCGAGGCTCCCACACGACCAAG
1 CGAGGCTCCCACA-CATCCAAGCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCACACGACCAAA
* * * * *
12458628 GGCCTAGG-TGCCGATCGT-CTCGAGGCTCTCGCACGACGAAGGACCTAGGTTTCCGATGGTGGC
64 GGCCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGA-CTAGGTTACCGATGGTGCC
* * * * * * *
12458691 TGAGGCTCCCGTACGACCAGAGACCTAGGTTACTGATGGTGCCTGAGGCTCCGCATGACCAGGGG
128 CGAGGCTCTCGTACGACCAGGGGCCTAGGTTACTGATGATGCCTGAGGCTCCACACGACCAGGGG
*
12458756 CCTAGGTTGTCGATGGTGCC
193 CCTAAGTTGTCGATGGTGCC
* * * *
12458776 TGAGGCTCCCATACATCCAAGCACCAAGGTGCCGATGGTACCCGAGGCTCCCACAGGACCAAAGG
1 CGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGG
* * * * *
12458841 CCTAGGTTGTCGATGGTGTTCAAGGCTCCCGCAC-ATCCAAGTACTAAGG-TGCCGATGGTGCCC
66 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGA-CCAAGGACT-AGGTTACCGATGGTGCCC
* * *
12458904 GAGGCTCTCGCACGACCAGGGGCCTAGGTTGCTGATGATG-CTCGAGGCTACCACACGACTAGGG
129 GAGGCTCTCGTACGACCAGGGGCCTAGGTTACTGATGATGCCT-GAGGCT-CCACACGACCAGGG
*
12458968 GCCTAAGTTTTCGATGGTGCC
192 GCCTAAGTTGTCGATGGTGCC
* * * * * *
12458989 CGAGGCTCCCACACATCTAAGCACCAAGGTGCCAATGGTGCTCGAGGCTCCCGCACAACCAACGG
1 CGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGG
* * * *
12459054 CCTAGGTTACCGACGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTACCGATGGT-CCCG
66 CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAA-GGACTAGGTTACCGATGGTGCCCG
* * * *
12459118 AGGCTCTCGTACGACCAAGGGCCTAGGTTACTGATGGTGCC-CATGGCTCC-CGTACGACCAGTG
130 AGGCTCTCGTACGACCAGGGGCCTAGGTTACTGATGATGCCTGA-GGCTCCAC--ACGACCAGGG
* **
12459181 GCCTAGGTTCCCGATGGTGCC
192 GCCTAAGTTGTCGATGGTGCC
12459202 CGA
1 CGA
12459205 TGTAATATCC
Statistics
Matches: 520, Mismatches: 100, Indels: 42
0.79 0.15 0.06
Matches are distributed among these distances:
210 3 0.01
211 104 0.20
212 134 0.26
213 264 0.51
214 15 0.03
ACGTcount: A:0.20, C:0.31, G:0.31, T:0.18
Consensus pattern (212 bp):
CGAGGCTCCCACACATCCAAGCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAAGG
CCTAGGTTGCCGATGGTGCTCGAGGCTCCCGCACGACCAAGGACTAGGTTACCGATGGTGCCCGA
GGCTCTCGTACGACCAGGGGCCTAGGTTACTGATGATGCCTGAGGCTCCACACGACCAGGGGCCT
AAGTTGTCGATGGTGCC
Found at i:12460549 original size:46 final size:46
Alignment explanation
Indices: 12460499--12460674 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
12460489 TGGTTGAGCA
* *
12460499 TCCGAACTCGTAGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAATG
* * ** * *
12460545 TCCGAACTCGTTGAGTTGAGTCTGAGTT--CGT-GAAATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAA--ATG
* * *
12460590 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAATG
* * *
12460638 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGG
12460675 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
43 5 0.05
44 2 0.02
45 2 0.02
46 58 0.57
47 26 0.25
48 2 0.02
49 2 0.02
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGCAAATG
Found at i:12460655 original size:93 final size:93
Alignment explanation
Indices: 12460496--12460666 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
12460486 GGATGGTTGA
* * * *
12460496 GCATCCGAACTCGTAGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTAGAGTTGAGTCCAAGTTCACTTAGGGATGCAAACGCCCGAACTCGTTGAGT
12460561 TGAGTCTGAGTTCGTGAAATGTAACTAG
66 TGAGTCTGAGTTCGTGAAATGTAACTAG
* * *
12460589 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTAGAGTTGAGTCCAAGTTCACTTAGGGATGCAAACGCCCGAACTCGTTGAGT
12460654 TGAGTCTGAGTTC
66 TGAGTCTGAGTTC
12460667 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTAGAGTTGAGTCCAAGTTCACTTAGGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCTGAGTTCGTGAAATGTAACTAG
Found at i:12467622 original size:16 final size:16
Alignment explanation
Indices: 12467601--12467640 Score: 80
Period size: 16 Copynumber: 2.5 Consensus size: 16
12467591 GAGCCTAGGG
12467601 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
12467617 GCAAAAGTGTAATTAT
1 GCAAAAGTGTAATTAT
12467633 GCAAAAGT
1 GCAAAAGT
12467641 TTAGGGGCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (16 bp):
GCAAAAGTGTAATTAT
Found at i:12468143 original size:46 final size:45
Alignment explanation
Indices: 12468093--12468268 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
12468083 TGGTTGAGCA
*
12468093 TCCGAACTCGTAGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATG-GAATG
* ** *
12468139 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CGT-GAAATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGGAA-T--G
* * *
12468184 CATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATG-GAATG
* * *
12468232 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTAGGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGG
12468269 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 17, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
44 2 0.02
45 1 0.01
46 59 0.57
47 27 0.26
48 1 0.01
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGGATGGAATG
Found at i:12468249 original size:93 final size:93
Alignment explanation
Indices: 12468090--12468260 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
12468080 GGATGGTTGA
* * *
12468090 GCATCCGAACTCGTAGAGTTGAGTCCGAGTTCACTTAGGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTAGAGTTGAGTCCAAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
12468155 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * * *
12468183 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTAGAGTTGAGTCCAAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
*
12468248 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
12468261 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTAGAGTTGAGTCCAAGTTCACTTAGGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:12469643 original size:43 final size:42
Alignment explanation
Indices: 12469582--12469738 Score: 199
Period size: 42 Copynumber: 3.7 Consensus size: 42
12469572 GGGCGTTACA
* *
12469582 CCCGAGGCTCTCGCACGACCAGGGGCCTAGGTTGCCGATGGT
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT
*
12469624 GCCCGAGGCTCCCGCACGACCAGGGGCCTAGG-TGCCGATGGT
1 -CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT
** * * *
12469666 ACCTAAGGCTCCCGCACGACCAACGACCTATGTTGCCGATGGT
1 -CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT
* *
12469709 CCCGAGGCTCTCGCATGACCAAGGGCCTAG
1 CCCGAGGCTCCCGCACGACCAAGGGCCTAG
12469739 TGTCACGGAC
Statistics
Matches: 98, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
42 58 0.59
43 40 0.41
ACGTcount: A:0.18, C:0.35, G:0.32, T:0.15
Consensus pattern (42 bp):
CCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGT
Found at i:12470136 original size:22 final size:23
Alignment explanation
Indices: 12470109--12470153 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
12470099 GGGTATCTAC
*
12470109 AAATCAAATC-TCTAGGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
12470131 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
12470154 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:12470157 original size:17 final size:17
Alignment explanation
Indices: 12470135--12470185 Score: 66
Period size: 19 Copynumber: 2.9 Consensus size: 17
12470125 ATTACAAAAT
12470135 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
*
12470152 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTA
*
12470171 CATATCTTCGAAGAT
1 CATATCTTCTAAGAT
12470186 CATGTTTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 13 0.43
18 2 0.07
19 15 0.50
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:12470158 original size:22 final size:22
Alignment explanation
Indices: 12470106--12470163 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
12470096 AGAGGGTATC
* *
12470106 TACAAATCAAATC-TCTAGGAT
1 TACAAATCATATCTTCTAAGAT
12470127 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
12470150 TACATATCATATCT
1 TACAAATCATATCT
12470164 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.59
23 10 0.31
ACGTcount: A:0.41, C:0.19, G:0.05, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:12475263 original size:17 final size:17
Alignment explanation
Indices: 12475241--12475293 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
12475231 ATTACAAAAT
12475241 CATATCTTCTAAGATCA
1 CATATCTTCTAAGATCA
**
12475258 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATCA
*
12475277 CATATCTTCGAAGATCA
1 CATATCTTCTAAGATCA
12475294 AGTTTCCATA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
17 13 0.45
18 2 0.07
19 14 0.48
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (17 bp):
CATATCTTCTAAGATCA
Found at i:12475520 original size:43 final size:42
Alignment explanation
Indices: 12475471--12475614 Score: 171
Period size: 43 Copynumber: 3.4 Consensus size: 42
12475461 ACCAATGACA
*
12475471 CTAGGTTGCCGATGGTGCCCGAGGCTCCCGCACGACCAGGGTC
1 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGG-C
** * *
12475514 CTAGGTTACCGATGGTGCCCGAGGCTCCTACACAACTAGGGGC
1 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCA-GGGC
* * ** *
12475557 CTAGGTTACTGATAGTGCTTGAGGCTCCCGTACGACCAAGGGC
1 CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACC-AGGGC
12475600 CTAGGTTACCGATGG
1 CTAGGTTACCGATGG
12475615 CACCGAGGCT
Statistics
Matches: 83, Mismatches: 16, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
43 79 0.95
44 4 0.05
ACGTcount: A:0.19, C:0.29, G:0.32, T:0.20
Consensus pattern (42 bp):
CTAGGTTACCGATGGTGCCCGAGGCTCCCGCACGACCAGGGC
Found at i:12476035 original size:42 final size:41
Alignment explanation
Indices: 12475869--12476032 Score: 150
Period size: 42 Copynumber: 3.9 Consensus size: 41
12475859 CCTCGAGTAG
* *
12475869 CATCGGCACCTTGGTGCCTTGGATGTGCGGGAGCCTCGGAAAC
1 CATCGGCACCTTGGTG-CTTGGATGTGCAGGAGCCTCGG-CAC
* * * *
12475912 CATCGGCAAACTAGGCT-CTTGGTTATGCAGGAGCCTCGTGCAC
1 CATCGGC-ACCTTGG-TGCTTGGATGTGCAGGAGCCTCG-GCAC
** * * *
12475955 CATTAGCACCTTGGTGCTCGAATGTGCGGGAGCCTCAGGCAC
1 CATCGGCACCTTGGTGCTTGGATGTGCAGGAGCCTC-GGCAC
* *
12475997 CATCGGCACCTTGGTGCTTAGATGTGCAAGAGCCTC
1 CATCGGCACCTTGGTGCTTGGATGTGCAGGAGCCTC
12476033 AGGTCGTGCG
Statistics
Matches: 94, Mismatches: 22, Indels: 11
0.74 0.17 0.09
Matches are distributed among these distances:
41 1 0.01
42 53 0.56
43 33 0.35
44 6 0.06
45 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (41 bp):
CATCGGCACCTTGGTGCTTGGATGTGCAGGAGCCTCGGCAC
Found at i:12476166 original size:84 final size:85
Alignment explanation
Indices: 12476051--12477745 Score: 897
Period size: 85 Copynumber: 19.9 Consensus size: 85
12476041 CGGGAGCCTC
* * * * * * * *
12476051 GGCCCTTGGTCGTGCTAGAGCCTCGGGCACCATTAGTAACCTAGG-TCTTTGTCGTGTGGGAGCC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCA-TAGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * *
12476115 TCGGGCACTATTGGTAACCTA
65 TCGGACACCATCGGTAACCTA
* *
12476136 GGCCCTTGATCGGGCGAGAGCCT-TGACACCATCGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCATAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
*
12476200 CGGATACCATCGGTAACCTA
66 CGGACACCATCGGTAACCTA
** * * * * * * *
12476220 GAACCTTGGTC-GGCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTACCGGAGCC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * *
12476284 TCGGGCACCATCGG-CACCTT
65 TCGGACACCATCGGTAACCTA
*** * * * * * * *
12476304 GGTGATTGGTCATGGG-G-GAGCTTCGGACACCATCGGTAACCTAGGCCCTTGGAT-ATACGGAA
1 GGCCCTTGATC--GGGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGG-TCGTGCGGGA
* *
12476366 GCCTCAGACACCATCGGTACCCTA
62 GCCTCGGACACCATCGGTAACCTA
* * ** * * * *
12476390 GGCCTTTGCTCGTAC-AGGAGCCTCGAACACCATCGGCAACCTAGG-TCTCAGGTCGTG-GGGAG
1 GGCCCTTGATCGGGCGA-GAGCCTCGGACACCAT-AGCAACCTAGGCCCT-TGGTCGTGCGGGAG
* *
12476452 CCTCGGGCACCATCGGAAACCTA
63 CCTCGGACACCATCGGTAACCTA
* * * * * * * ** *
12476475 GGCCCTTGGTCGTGTGGGAGCCTCAGAC-CCATCGGC-ACCTTGGTGCTTGGAT-GTACGGGAGC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGG-TCGTGCGGGAGC
*
12476537 CTCGAACACCATCGGTAACCTA
64 CTCGGACACCATCGGTAACCTA
* ** * * * * * ** *
12476559 GGCCCTTGGTCGTACGGGAGCCTTGGACACTATCGGCAACATAGGCCCTCAGTCGTGCTGGAGCC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * *
12476624 TAGGGCACCATCGGGAACCTA
65 TCGGACACCATCGGTAACCTA
* * ** * * * *
12476645 GGCCCCTGGTCATGCGGGAGCCTC-GAGCACCATCGTCAACCTAGGCCCTTGGTCGTGAGAGAGC
1 GGCCCTTGATCGGGCGAGAGCCTCGGA-CACCATAG-CAACCTAGGCCCTTGGTCGTGCGGGAGC
**
12476709 CTCGG-CACCATCGACAACCTA
64 CTCGGACACCATCGGTAACCTA
* * * * * **
12476730 GGCTCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTAGTG--CTTGGTCGTG-GGTGA
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCA-TAGCAACC-TAG-GCCCTTGGTCGTGCGG-GA
* * *
12476791 GCCTCAGACACCATCGGCAACCTT
62 GCCTCGGACACCATCGGTAACCTA
** * * * *
12476815 TTCCCTTGGA-CGTATG-GA-AGCCTCGGACACCATCGATAACCTAGGCCTTTGGTCGTGCGGGA
1 GGCCCTT-GATCG--GGCGAGAGCCTCGGACACCATAG-CAACCTAGGCCCTTGGTCGTGCGGGA
*
12476877 GCCTCGAACACCATCGGTAACCTA
62 GCCTCGGACACCATCGGTAACCTA
* * * * * * * *
12476901 GGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * *
12476966 TCGGATACCATCAG-CACCTT
65 TCGGACACCATCGGTAACCTA
* ** * * * * *
12476986 TGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGCAGC
1 GGCCCTT-GATCGGGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
12477050 CTCGGGCACCATCGGCAACCTA
64 CTCGGACACCATCGGTAACCTA
* * * *
12477072 GGCCCTCGATCGTGCGGGAGCCTCGGGCACCATCGAG-AACCTAGGCCCTTGGTCGTGCGGGAGC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCAT--AGCAACCTAGGCCCTTGGTCGTGCGGGAGC
*
12477136 CTCGGGCACCATCGGTAACCTA
64 CTCGGACACCATCGGTAACCTA
* * *
12477158 GGCCCTTGGTCGTGG-GAGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGC
1 GGCCCTTGATCG-GGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* * *
12477221 CTC-GAGCATCATCGG-CACCTT
64 CTCGGA-CACCATCGGTAACCTA
** * * * **
12477242 GGTGCTTGGAT-GTGTG-GA-AGCCTCGGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGGG
1 GGCCCTT-GATCG-G-GCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGG-TCGTGCGGG
* **
12477302 AGCCTCAGG-CAACATCGACAACCTA
61 AGCCTC-GGACACCATCGGTAACCTA
* * * * * * * *
12477327 GGCCCCTGGTCGTGAGAGAGCCTC-GAGCACCATCGGTAACCTGGGCCCCTGGTCGTGCGGGAGC
1 GGCCCTTGATCGGGCGAGAGCCTCGGA-CACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGGAGC
* *
12477391 CTC-GAGCACCACCGGCAACCTA
64 CTCGGA-CACCATCGGTAACCTA
* * ** * * * * **
12477413 GGCCCCTGGTCTTGCGAGAGCCT-TGAGACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAAAC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCATAG-CAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * *
12477477 TCGGGCACTATCGG-CACTTA
65 TCGGACACCATCGGTAACCTA
* * * * * * * * *
12477497 GGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATTGGTAACCTAGGCCCCTGGTCGTGCGAGAGCC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCA-TAGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* **
12477562 TCGGGCACCATCGACAACCTA
65 TCGGACACCATCGGTAACCTA
* * * * * *
12477583 GGACCCTGGTAGTCCGG-GAGA--CTCAGG-CACCATCGGCGACCTAGGCCCATGGTCGTGTGGG
1 GG-CCCTTG-A-TCGGGCGAGAGCCTC-GGACACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGG
* *
12477644 AACCTCGGGCACCATCGGTAACCTA
61 AGCCTCGGACACCATCGGTAACCTA
* * * * * *
12477669 GGCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCGGC-ACCTAAGCCCTTGGTCGTGTGGGAGCC
1 GGCCCTTGATCGGGCGAGAGCCTCGGACACCAT-AGCAACCTAGGCCCTTGGTCGTGCGGGAGCC
* *
12477732 TAGGGCACCATCGG
65 TCGGACACCATCGG
12477746 CACCTTGGTG
Statistics
Matches: 1272, Mismatches: 262, Indels: 153
0.75 0.16 0.09
Matches are distributed among these distances:
83 35 0.03
84 274 0.22
85 499 0.39
86 443 0.35
87 16 0.01
88 3 0.00
89 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (85 bp):
GGCCCTTGATCGGGCGAGAGCCTCGGACACCATAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT
CGGACACCATCGGTAACCTA
Found at i:12476227 original size:43 final size:43
Alignment explanation
Indices: 12476051--12477747 Score: 1522
Period size: 43 Copynumber: 39.9 Consensus size: 43
12476041 CGGGAGCCTC
** * ** *
12476051 GGCCCTTGGTCGTGCTAGAGCCTCGGGCACCATTAGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * * * * *
12476094 GG-TCTTTGTCGTGTGGGAGCCTCGGGCACTATTGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12476136 GGCCCTTGATCGGGCGAGAGCCT-TGACACCATC-GCAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* *
12476177 GGCCCTTGGTCGTGCGGGAGCCTCGGATACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
** * *
12476220 GAACCTTGGTCG-GCGGGAGCCTCGGGCACCATCGGCAAACTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12476262 GGCCCTTGGTCGTACCGGAGCCTCGGGCACCATCGGC-ACCTT
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
*** * * * *
12476304 GGTGATTGGTCATGGGGGAGCTTCGGACACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * * * *
12476347 GGCCCTTGGAT-ATACGGAAGCCTCAGACACCATCGGTACCCTA
1 GGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * * *
12476390 GGCCTTTGCTCGTACAGGAGCCTCGAACACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12476433 GG-TCTCAGGTCGTG-GGGAGCCTCGGGCACCATCGGAAACCTA
1 GGCCCT-TGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * *
12476475 GGCCCTTGGTCGTGTGGGAGCCTCAGAC-CCATCGGC-ACCTT
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
** * * *
12476516 GGTGCTTGGAT-GTACGGGAGCCTCGAACACCATCGGTAACCTA
1 GGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12476559 GGCCCTTGGTCGTACGGGAGCCTTGGACACTATCGGCAACATA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
** * * * *
12476602 GGCCCTCAGTCGTGCTGGAGCCTAGGGCACCATCGGGAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * *
12476645 GGCCCCTGGTCATGCGGGAGCCTC-GAGCACCATCGTCAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTA
* * *
12476688 GGCCCTTGGTCGTGAGAGAGCCTCGG-CACCATCGACAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * *
12476730 GGCTCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACC-TA
* *
12476773 GTG--CTTGGTCGTG-GGTGAGCCTCAGACACCATCGGCAACCTT
1 G-GCCCTTGGTCGTGCGG-GAGCCTCGGACACCATCGGCAACCTA
** * ** * **
12476815 TTCCCTTGGACGTATGGAAGCCTCGGACACCATCGATAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * *
12476858 GGCCTTTGGTCGTGCGGGAGCCTCGAACACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * *
12476901 GGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12476944 GGCCCTTGGTCGTGTGGGAGCCTCGGATACCATCAGC-ACCTT
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* ** *
12476986 TGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTA
1 GGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* *
12477029 GGCCCTTGGTCGTGCGGCAGCCTCGGGCACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * *
12477072 GGCCCTCGATCGTGCGGGAGCCTCGGGCACCATCGAG-AACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCG-GCAACCTA
* *
12477115 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
12477158 GGCCCTTGGTCGTG-GGAGAGCCTCGG-CACCATCGGCAACCTA
1 GGCCCTTGGTCGTGCGG-GAGCCTCGGACACCATCGGCAACCTA
* * *
12477200 GGCCCTTGGTCGTGTGGGAGCCTC-GAGCATCATCGGC-ACCTT
1 GGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTA
** * * * *
12477242 GGTGCTTGGAT-GTGTGGAAGCCTCGGACACCATCGGC-ACTTT
1 GGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
** * *
12477284 GGTGCTTGGAT-GTGCGGGAGCCTCAGG-CAACATCGACAACCTA
1 GGCCCTTGG-TCGTGCGGGAGCCTC-GGACACCATCGGCAACCTA
* * * * *
12477327 GGCCCCTGGTCGTGAGAGAGCCTC-GAGCACCATCGGTAACCTG
1 GGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTA
* *
12477370 GGCCCCTGGTCGTGCGGGAGCCTC-GAGCACCACCGGCAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGA-CACCATCGGCAACCTA
* * * * * *
12477413 GGCCCCTGGTCTTGCGAGAGCCT-TGAGACCATCGACAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* ** * * *
12477455 GGCCCTTGGTCGTGCGAGAAACTCGGGCACTATCGGC-ACTTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12477497 GGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATTGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12477540 GGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12477583 GGACCC-TGGTAGTCCGGGAGACTCAGG-CACCATCGGCGACCTA
1 GG-CCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCAACCTA
* * * * *
12477626 GGCCCATGGTCGTGTGGGAACCTCGGGCACCATCGGTAACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* *
12477669 GGCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCGGC-ACCTA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
* * * *
12477710 AGCCCTTGGTCGTGTGGGAGCCTAGGGCACCATCGGCA
1 GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCA
12477748 CCTTGGTGCA
Statistics
Matches: 1349, Mismatches: 256, Indels: 98
0.79 0.15 0.06
Matches are distributed among these distances:
41 82 0.06
42 463 0.34
43 793 0.59
44 11 0.01
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (43 bp):
GGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTA
Found at i:12477206 original size:725 final size:721
Alignment explanation
Indices: 12476110--12477750 Score: 1857
Period size: 725 Copynumber: 2.3 Consensus size: 721
12476100 TGTCGTGTGG
* * * * * * *
12476110 GAGCCTCGGGCACTATTGGTAACCTAGGCCCTTGATCGGGCGAGAGCCTTG-ACACCATC-GCAA
1 GAGCCTCGGGCACCATCGATAACCTAGG-CCTTGGTCGTGCGGGAGCCTCGAACACCATCGGCAA
* ** **
12476173 CCTAGGCCCTTGGTCGTGCGGGAGCCTCGGATACCATCGGTAACCTAGAACCTTGGTCG-GCGGG
65 CCTAGGCCCATGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGG
* **
12476237 AGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCGTACCGGAGCCTCGGGCACCATCGGCACC
130 AGCCTC-GGCACCATCGGC-ACCTAGGCCCTTGGTCGTACCGGAGCCTCGAACACCATCGGCACC
* ** * * * * *
12476302 TTGGTGATTGGTCATGGGGGAGCTTCGGACACCATCGGTAACCTAGGCCCTTGGATATACGGAAG
193 TAGGCCATTGGTCATGCGGCAGCCTCGGACACCATCGGCAACCTAGGCCCTTCGATATACGGAAG
* *
12476367 CCTCAGACACCATCGGTACCCTAGGCCTTTGCTCGTACAGGAGCCTCGAACACCATCGGCAACCT
258 CCTCAGACACCATCGGTAACCTAGGCCCTTGCTCGTACAGGAGCCTCGAACACCATCGGCAACCT
*
12476432 AGGTCTCAGGTCGTGGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGTGGGAGCC
323 AGGCCTCAGGTCGTGGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGTGGGAGCC
*
12476497 TC-AG-ACCCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAACACCATCGGTAACCTAG
388 TCGAGCA-CCATCGGCACCTTGGTGCTTGGATGTACGGAAGCCTCGAACACCATCGG-AACCTAG
* * *
12476560 GCCCTTGG-TCGTACGGGAGCCT-TGG-ACACTATCGGCAACATAGG-CCCTCAGTCGTGCTG-G
451 GCCCTTGGAT-GTACGGGAGCCTCAGGCA-AC-ATCGACAACATAGGCCCCT-AGTCGTG-AGAG
* * *
12476620 AGCCTAGGGCACCATCGGGAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCATCGTCAAC
511 AGCCTAGAGCACCATCGGGAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCACCGGCAAC
* * *
12476685 CTAGGCCCTTGGTCGTGAGAGAGCCTCG-GCACCATCGACAACCTAGGCTCTTGGTCGTGCGGGA
576 CTAGGCCCCTGGTCGTGAGAGAGCCTCGAG-ACCATCGACAACCTAGGCCCTTGGTCGTGCGAGA
**
12476749 GCCTCGGGCACCACCGGCACCTTAGTG-CTTGGTCGTG-GGTGAGCCTCAGACACCATCGGCAAC
640 AACTCGGGCACCACCGGCA-CTTAG-GCCTTGGTCGTGCGG-GAGCCTCAGACACCATCGGCAAC
*** *
12476812 CTTTTCCCTTGGACGTATG-GA
702 CTAGGCCCCTGGACG--TGCGA
* *
12476833 -AGCCTCGGACACCATCGATAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGAACACCATCGGTAA
1 GAGCCTCGGGCACCATCGATAACCTAGGCC-TTGGTCGTGCGGGAGCCTCGAACACCATCGGCAA
* *
12476897 CCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGGG
65 CCTAGGCCCATGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGG
* * ** ** * *
12476962 AGCCTCGGATACCATCAGCACCTTTGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAAC
130 AGCCTCGG-CACCATCGGCACCTAGGCCCTTGG-TCGTACCGGAGCCTCGAACACCATCGGC-AC
* * * * * *
12477026 CTAGGCCCTTGGTCGTGCGGCAGCCTCGGGCACCATCGGCAACCTAGGCCC-TCGATCGTGCGGG
192 CTAGGCCATTGGTCATGCGGCAGCCTCGGACACCATCGGCAACCTAGGCCCTTCGAT-ATACGGA
* * * * * ** *
12477090 AGCCTCGGGCACCATCGAG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAA
256 AGCCTCAGACACCATCG-GTAACCTAGGCCCTTGCTCGTACAGGAGCCTCGAACACCATCGGCAA
* *
12477154 CCTAGGCC-CTTGGTCGTGGGAGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGG
320 CCTAGGCCTC-AGGTCGTGGG-GAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGTGG
* ** * * *
12477217 GAGCCTCGAGCATCATCGGCACCTTGGTGCTTGGATGTGTGGAAGCCTCGGACACCATCGGCACT
383 GAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTACGGAAGCCTCGAACACCATCGGAACC
* ** * * *
12477282 TTGGTGCTTGGATGTGCGGGAGCCTCAGGCAACATCGACAACCTAGGCCCCTGGTCGTGAGAGAG
448 TAGGCCCTTGGATGTACGGGAGCCTCAGGCAACATCGACAACATAGGCCCCTAGTCGTGAGAGAG
* * * *
12477347 CCTCGAGCACCATCGGTAACCTGGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCACCGGCAACCT
513 CCTAGAGCACCATCGGGAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCACCGGCAACCT
* * *
12477412 AGGCCCCTGGTCTTGCGAGAGCCTTGAGACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAAAC
578 AGGCCCCTGGTCGTGAGAGAGCCTCGAGACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAAAC
* * * * * * *
12477477 TCGGGCACTATCGGCACTTAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATTGGTAACCTAGG
643 TCGGGCACCACCGGCACTTAGG-CCTTGGTCGTGCGGGAGCCTCAGACACCATCGGCAACCTAGG
*
12477542 CCCCTGGTCGTGCGA
707 CCCCTGGACGTGCGA
* * * * * * *
12477557 GAGCCTCGGGCACCATCGACAACCTAGGACCCTGGTAGTCCGGGAGACTC-AGGCACCATCGGCG
1 GAGCCTCGGGCACCATCGATAACCTAGG-CCTTGGTCGTGCGGGAGCCTCGA-ACACCATCGGCA
* * *
12477621 ACCTAGGCCCATGGTCGTGTGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGA
64 ACCTAGGCCCATGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGG
* * *** * **
12477686 GAGCCTCGGGACCATCGGCACCTAAGCCCTTGGTCGTGTGGGAGCCTAGGGCACCATCGGCACCT
129 GAGCCTCGGCACCATCGGCACCTAGGCCCTTGGTCGTACCGGAGCCTCGAACACCATCGGCACCT
12477751 TGGTGCATCG
Statistics
Matches: 771, Mismatches: 120, Indels: 54
0.82 0.13 0.06
Matches are distributed among these distances:
721 2 0.00
722 39 0.05
723 16 0.02
724 144 0.19
725 500 0.65
726 68 0.09
727 2 0.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (721 bp):
GAGCCTCGGGCACCATCGATAACCTAGGCCTTGGTCGTGCGGGAGCCTCGAACACCATCGGCAAC
CTAGGCCCATGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGA
GCCTCGGCACCATCGGCACCTAGGCCCTTGGTCGTACCGGAGCCTCGAACACCATCGGCACCTAG
GCCATTGGTCATGCGGCAGCCTCGGACACCATCGGCAACCTAGGCCCTTCGATATACGGAAGCCT
CAGACACCATCGGTAACCTAGGCCCTTGCTCGTACAGGAGCCTCGAACACCATCGGCAACCTAGG
CCTCAGGTCGTGGGGAGCCTCGGGCACCATCGGAAACCTAGGCCCTTGGTCGTGTGGGAGCCTCG
AGCACCATCGGCACCTTGGTGCTTGGATGTACGGAAGCCTCGAACACCATCGGAACCTAGGCCCT
TGGATGTACGGGAGCCTCAGGCAACATCGACAACATAGGCCCCTAGTCGTGAGAGAGCCTAGAGC
ACCATCGGGAACCTAGGCCCCTGGTCATGCGGGAGCCTCGAGCACCACCGGCAACCTAGGCCCCT
GGTCGTGAGAGAGCCTCGAGACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAAACTCGGGCAC
CACCGGCACTTAGGCCTTGGTCGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCCTGGAC
GTGCGA
Found at i:12477543 original size:213 final size:211
Alignment explanation
Indices: 12476051--12477745 Score: 1570
Period size: 213 Copynumber: 8.0 Consensus size: 211
12476041 CGGGAGCCTC
* ** * * *
12476051 GGCCCTTGGTCGTGCTAGAGCCTCGGGCACCATTAGTAACCTAGG-TCTTTGTCGTGTGGGAGCC
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * * * * *
12476115 TCGGGCACTATTGGTAACCTAGGCCCTTGATCGGGCGAGAGCCTTGACACCATC-GCAACCTAGG
66 TC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGACACCATCGGCAACCTAGG
* * **
12476179 CCCTTGGTCGTGCGGGAGCCTCGGATACCATCGGTAACCTAGAACCTTGGTCG-GCGGGAGCCTC
130 CCCTTGGTCGTGC-GGAGCCTCGGACACCATCGG-CACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* *
12476243 GGGCACCATCGGCAAACTA
193 GGGCACCATCGGTAACCTA
* * * *** * *
12476262 GGCCCTTGGTCGTACCG-GAGCCTCGGGCACCATCGG-CACCTTGGTGATTGGTCATGGGGGAGC
1 GGCCCTTGGTCGT-GCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGC
* * * * * * *
12476325 TTCGGACACCATCGGTAACCTAGGCCCTTGGAT-ATACGGAAGCCTCAGACACCATCGGTACCCT
65 CTCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTC-GACACCATCGGCAACCT
* * * * * *
12476389 AGGCCTTTGCTCGTACAGGAGCCTCGAACACCATCGGCAACCTAGG-TCTCAGGTCGTG-GGGAG
127 AGGCCCTTGGTCGTGC-GGAGCCTCGGACACCATCGGC-ACCTAGGCCCT-TGGTCGTGCGGGAG
*
12476452 CCTCGGGCACCATCGGAAACCTA
189 CCTCGGGCACCATCGGTAACCTA
* * * * * * ** *
12476475 GGCCCTTGGTCGTGTGGGAGCCTCAGAC-CCATCGG-CACCTTGGTGCTTGGAT-GTACGGGAGC
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGG-TCGTGCGGGAGC
* * * * * *
12476537 CTCGAACACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCCTTGGACACTATCGGCAACATA
65 CTCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCC-TCGACACCATCGGCAACCTA
** * * * * *
12476602 GGCCCTCAGTCGTGCTGGAGCCTAGGGCACCATCGGGAACCTAGGCCCCTGGTCATGCGGGAGCC
128 GGCCCTTGGTCGTGC-GGAGCCTCGGACACCATC-GGCACCTAGGCCCTTGGTCGTGCGGGAGCC
*
12476667 TCGAGCACCATC-GTCAACCTA
191 TCGGGCACCATCGGT-AACCTA
* ** *
12476688 GGCCCTTGGTCGTGAGAGAGCCTC-GGCACCATCGACAACCTAGGCTCTTGGTCGTGCGGGAGCC
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCC
*
12476752 TCGGGCACCACCGGC-ACCTTAGTG--CTTGGTCGTG-GGTGAGCCTCAGACACCATCGGCAACC
66 TC-GGCACCATCGGCAACC-TAG-GCCCTTGGTCGTGCGG-GAGCCTC-GACACCATCGGCAACC
*** * ** ** *
12476813 TTTTCCCTTGGACGTATGGAAGCCTCGGACACCATCGATAACCTAGGCCTTTGGTCGTGCGGGAG
126 TAGGCCCTTGGTCGTGCGG-AGCCTCGGACACCATCG-GCACCTAGGCCCTTGGTCGTGCGGGAG
**
12476878 CCTCGAACACCATCGGTAACCTA
189 CCTCGGGCACCATCGGTAACCTA
* * *
12476901 GGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCC
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * ** **
12476966 TCGGATACCATCAGC-ACCTTTGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTA
66 TCGG-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG-ACACCATCGGCAACCTA
* * *
12477029 GGCCCTTGGTCGTGCGGCAGCCTCGGGCACCATCGGCAACCTAGGCCCTCGATCGTGCGGGAGCC
128 GGCCCTTGGTCGTGCGG-AGCCTCGGACACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCC
12477094 TCGGGCACCATCGAG-AACCTA
191 TCGGGCACCATCG-GTAACCTA
*
12477115 GGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTG-GGAGAGC
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGG-GAGC
* * *
12477179 CTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCATCATCGGC-ACCTTG
65 CTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGA-CACCATCGGCAACCTAG
** * * * **
12477243 GTGCTTGGAT-GTGTGGAAGCCTCGGACACCATCGGCACTTTGGTGCTTGGAT-GTGCGGGAGCC
129 GCCCTTGG-TCGTGCGG-AGCCTCGGACACCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCC
* * **
12477306 TCAGGCAACATCGACAACCTA
191 TCGGGCACCATCGGTAACCTA
* * * * *
12477327 GGCCCCTGGTCGTGAGAGAGCCTCGAGCACCATCGGTAACCTGGGCCCCTGGTCGTGCGGGAGCC
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCC
* * * * * * *
12477392 TCGAGCACCACCGGCAACCTAGGCCCCTGGTCTTGCGAGAGCCTTGAGACCATCGACAACCTAGG
66 TCG-GCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGACACCATCGGCAACCTAGG
** * * * *
12477457 CCCTTGGTCGTGCGAGAAACTCGGGCACTATCGGCACTTAGGCCCTTGGTTGTGCGGGAGCCTCG
130 CCCTTGGTCGTGCG-GAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCG
*
12477522 GGCACCATTGGTAACCTA
194 GGCACCATCGGTAACCTA
* ** * * *
12477540 GGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGACAACCTAGGACCC-TGGTAGTCCGGGAGA
1 GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTTGGTCGTGCGGGAGC
* * * * * *
12477604 CTCAGGCACCATCGGCGACCTAGGCCCATGGTCGTGTGGGAACCTCGGGCACCATCGGTAACCTA
65 CTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GACACCATCGGCAACCTA
* * *
12477669 GGCCCTTGGTCGTGCGAGAGCCTCGG-GACCATCGGCACCTAAGCCCTTGGTCGTGTGGGAGCCT
128 GGCCCTTGGTCGTGCG-GAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCT
*
12477733 AGGGCACCATCGG
192 CGGGCACCATCGG
12477746 CACCTTGGTG
Statistics
Matches: 1219, Mismatches: 211, Indels: 106
0.79 0.14 0.07
Matches are distributed among these distances:
210 8 0.01
211 75 0.06
212 245 0.20
213 559 0.46
214 326 0.27
215 6 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.19
Consensus pattern (211 bp):
GGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCC
TCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGACACCATCGGCAACCTAGGC
CCTTGGTCGTGCGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
CACCATCGGTAACCTA
Found at i:12477769 original size:256 final size:252
Alignment explanation
Indices: 12475893--12477772 Score: 1467
Period size: 256 Copynumber: 7.4 Consensus size: 252
12475883 TGCCTTGGAT
* * * * ** ** *
12475893 GTGCGGGAGCCTCGGAAACCATCGGCAAACTAGGCTCTTGGTTATGCAGGAGCCTCGTGCACCAT
1 GTGCGAGAGCCTCGG-GACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCAT
** * * * * ** *
12475958 TAGCACCTTGGTGCTCGAATGTGCGGGAGCCTCAGG-CACCATCGGCACCTTGGTGCTTAGAT-G
65 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GGACACCATCGGAACCTAGGCCCTT-GGTCG
* * * ** * * * **
12476021 TGCAAGAGCCTCAGG--TCGTGCGGGAGCCTCGGCCCTTGGTCGTGCTAGAGCCTCGGGCACCAT
128 TGC-GGAGCCTCAGGCACCAT-CGACAACCTAGGCCC-TGGTAGTGCGGGAGCCTC-GGCACCAT
** * * * * * * *
12476084 TAGTAACCTAGG-TCTTTGTCGTGTGGGAGCCTCGGGCACTATTGGTAACCTAGGCCCTTGATC
189 CGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
* * ** * **
12476147 GGGCGAGAGCCTTGACACCATC-GCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGATACCATC
1 GTGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
* * *** * *
12476211 GGTAACCTAGAACCTTGG-TCG-GCGGGAGCCTCGGGCACCATCGGCAAACTAGGCCCTTGGTCG
66 GG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCG
* * * * *** * *
12476274 TACCGGAGCCTCGGGCACCATCGGC-ACCTTGGTGATTGGTCA-TGGGGGAGCTTCGGACACCAT
128 T-GCGGAGCCTCAGGCACCATCGACAACCTAGG-CCCTGGT-AGTGCGGGAGCCTCGG-CACCAT
* * * * * * ** *
12476337 CGGTAACCTAGGCCCTTGGAT-ATACGGAAGCCTCAGACACCATCGGTACCCTAGGCCTTTGCTC
189 CGGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
* ** * *
12476401 GTAC-AGGAGCCTCGAACACCATCGGCAACCTAGG-TCTCAGGTCGTG-GGGAGCCTCGGGCACC
1 GTGCGA-GAGCCTCG-GGACCATCGGCAACCTAGGCCCT-TGGTCGTGTGGGAGCCTCGGGCACC
* * ** * * * * **
12476463 ATCGGAAACCTAGGCCCTTGG-TCGTGTGGGAGCCTCAGAC-CCATCGGCACCTTGGTGCTTGGA
63 ATCGG-CACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-
* * ** * * *
12476526 T-GTACGGGAGCCTC-GAACACCATCGGTAACCTAGGCCCTTGGTCGTACGGGAGCCTTGGACAC
125 TCGTGC-GGAGCCTCAG-GCACCATCGACAACCTAGGCCC-TGGTAGTGCGGGAGCCTCGG-CAC
* * * ** * * *
12476589 TATCGGCAACATAGGCCCTCAGTCGTGCTGGAGCCTAGGGCACCATCGGGAACCTAGGCCCCTGG
186 CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGG
12476654 TC
251 TC
* * * * * *
12476656 ATGCGGGAGCCTCGAGCACCATCGTCAACCTAGGCCCTTGGTCGTGAGAGAGCCTC-GGCACCAT
1 GTGCGAGAGCCTCG-GGACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCAT
* * * * *
12476720 CGACAACCTAGGCT-CTTGG-TCGTGCGGGAGCCTCGGGCACCACCGGCACCTTAGTG--CTTGG
65 CGGC-ACCTTGG-TGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGAACC-TAG-GCCCTTGG
* * * *** ** *
12476781 TCGTGGGTGAGCCTCAGACACCATCGGCAACCTTTTCCCTTGG-ACGTATGGAAGCCTCGGACAC
125 TCGTGCG-GAGCCTCAGGCACCATCGACAACCTAGGCCC-TGGTA-GTGCGGGAGCCTCGG-CAC
* * **
12476845 CATCGATAACCTAGGCCTTTGGTCGTGCGGGAGCCTCGAACACCATCGGTAACCTAGGCCCCTGG
186 CATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGG
12476910 TC
251 TC
* * **
12476912 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGATACCAT
1 GTGCGAGAGCCTCGGG-ACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCAT
* * *
12476977 CAGCACCTTTGTGCTTGGATGTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGT
65 CGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGT
* * * *
12477042 GCGGCAGCCTCGGGCACCATCGGCAACCTAGGCCCTCGATCGTGCGGGAGCCTCGGGCACCATCG
129 GCGG-AGCCTCAGGCACCATCGACAACCTAGGCCCT-GGTAGTGCGGGAGCCTC-GGCACCATCG
*
12477107 AG-AACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
191 -GTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
* * * *
12477169 GTGGGAGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGAGCATCATC
1 GTGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
* * * * * **
12477234 GGCACCTTGGTGCTTGGATGTGTGGAAGCCTCGGACACCATCGGCACTTTGGTGCTTGGAT-GTG
66 GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGG-TCGTG
* * * *
12477298 CGGGAGCCTCAGGCAACATCGACAACCTAGGCCCCTGGTCGTGAGAGAGCCTCGAGCACCATCGG
130 C-GGAGCCTCAGGCACCATCGACAACCTAGG-CCCTGGTAGTGCGGGAGCCTCG-GCACCATCGG
* * * * *
12477363 TAACCTGGGCCCCTGGTCGTGCGGGAGCCTCGAGCACCACCGGCAACCTAGGCCCCTGGTC
192 TAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
* * * * * * ** *
12477424 TTGCGAGAGCCTTGAGACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAAACTCGGGCACTATC
1 GTGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
** * * * *
12477489 GGCA-CTTAGGCCCTTGGTTGTGCGGGAGCCTCGGGCACCATTGGTAACCTAGGCCCCTGGTCGT
66 GGCACCTT-GGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGT
* * *
12477553 GCGAGAGCCTCGGGCACCATCGACAACCTAGGACCCTGGTAGTCCGGGAGACTCAGGCACCATCG
129 GCG-GAGCCTCAGGCACCATCGACAACCTAGG-CCCTGGTAGTGCGGGAGCCTC-GGCACCATCG
** * * * *
12477618 GCGACCTAGGCCCATGGTCGTGTGGGAACCTCGGGCACCATCGGTAACCTAGGCCCTTGGTC
191 GTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
* *
12477680 GTGCGAGAGCCTCGGGACCATCGGC-ACCTAAGCCCTTGGTCGTGTGGGAGCCTAGGGCACCATC
1 GTGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
*
12477744 GGCACCTTGGTGCATCGGATGTGCGGGAG
66 GGCACCTTGGTGC-TTGGATGTGCGGGAG
12477773 GGTCGAGCAC
Statistics
Matches: 1300, Mismatches: 265, Indels: 120
0.77 0.16 0.07
Matches are distributed among these distances:
251 2 0.00
252 59 0.05
253 70 0.05
254 95 0.07
255 447 0.34
256 484 0.37
257 140 0.11
258 3 0.00
ACGTcount: A:0.18, C:0.31, G:0.32, T:0.19
Consensus pattern (252 bp):
GTGCGAGAGCCTCGGGACCATCGGCAACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCACCATC
GGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGC
GGAGCCTCAGGCACCATCGACAACCTAGGCCCTGGTAGTGCGGGAGCCTCGGCACCATCGGTAAC
CTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
Found at i:12478108 original size:17 final size:17
Alignment explanation
Indices: 12478086--12478118 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
12478076 AAAAAAAAAG
12478086 AATGTCGCCTGGTAGCA
1 AATGTCGCCTGGTAGCA
12478103 AATGTCGCCTGGTAGC
1 AATGTCGCCTGGTAGC
12478119 GTGTTTTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.24, G:0.30, T:0.24
Consensus pattern (17 bp):
AATGTCGCCTGGTAGCA
Found at i:12491243 original size:35 final size:35
Alignment explanation
Indices: 12491204--12491270 Score: 107
Period size: 35 Copynumber: 1.9 Consensus size: 35
12491194 TCTCCGGAGC
*
12491204 TTGGCAAATATGGAAAGTAATCTTCAAAGATACGT
1 TTGGCAAATATGGAAAGGAATCTTCAAAGATACGT
* *
12491239 TTGGCAAATATGGAAGGGGATCTTCAAAGATA
1 TTGGCAAATATGGAAAGGAATCTTCAAAGATA
12491271 TGCGATCCTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.39, C:0.10, G:0.24, T:0.27
Consensus pattern (35 bp):
TTGGCAAATATGGAAAGGAATCTTCAAAGATACGT
Found at i:12493070 original size:595 final size:593
Alignment explanation
Indices: 12491755--12494881 Score: 3060
Period size: 595 Copynumber: 5.2 Consensus size: 593
12491745 GAGACTCAGA
* * * * * * * * **
12491755 CACCATCGGAAAACTAGGCTCTTGGTTGTGCTGGAGCCCCGCGCACCATCAGCACCCT-GGTGCT
1 CACCATCGGCAACCTAGGC-CTTGGTCGTGCGGGAGCCTCGGGCACCATC-GGAACCTAGGCCCT
* * * * * *
12491819 CGGATGTGCGAGAGCGTCGG-CACCATCGGTAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGC
64 TGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTGGGCCCTTGGTCGTGCGGGAGCCTCGGGC
* * * ** * *
12491883 ACTATCGGTAACCTAGGCCCTTGGTCGTACAAGAGCCTC-AGCACCATCGGCAACCTAGGCCCTT
129 ACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCACCATCGGCAACCTAGGCCCCT
* * * *
12491947 GGTCGTGCGGGAACCTCAGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
194 GGTCGTGCGGGAGCCTC-GGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
* * * * * ** *
12492012 CCATCGACAAACTAGGCCCTTGGTC-TCGTGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTT
258 CCATCGGCAACCTAGGCCCTTGGTCGT-GCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * * * * *
12492076 GCCGTGTGGGAGCCTCAGACACCATTGGTAACCTAGGCCCTTGGAT-GTGCGGAAGCCTCAGACA
322 GTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACA
* * * * *
12492140 CCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGACACCATCTGCAACCTAGGCCCCTG
386 CCATCGGCAACCTAGGCCCCTGGTCGTG-AGGAGCCTCGG-GACCATCGGCAACCTAGGCCCCTG
* * * * * *
12492205 GTTGTGCGGGAGCCTCGGGCAACATCGGCAACCTAGGCCCTTGGTCGGGCAGGAGCCTCGGACAC
449 GTCGTGCGGGAGCCTCGGGCAGCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
* *
12492270 TATCGGTACCTTGGTGCTTGGATGTGCGGGAGCCT-GGAACACCATCGGCAACCTAGGCCCTTGG
513 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGG-ACACCATCGGC-ACCTAGGCCCTTGG
* * *
12492334 ACATGCCGGAGCCTCGGG
576 TCGTGCGGGAGCCTCGGG
** *
12492352 CACCATCGATAACCTAGGCCCTCGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTTA-GCCC
1 CACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACC-TAGGCCC
* * *** **
12492416 TTGG-TCGTGCGAGAGCCTCGGGCACCATTTCCAACCTAAGCCCTTGGTCGTG-GGAGAGCCTC-
63 TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTGGGCCCTTGGTCGTGCGG-GAGCCTCG
* * *
12492478 GGCACCATCGGTAATCTAGG-CCCTGGGTCGTGCGGGAGCCTCTGGCACCATCGGC-ACCTTGGT
126 GGCACCATCGGTAACCTAGGCCCCT-GGTCGTGCGGGAGCCTCTGGCACCATCGGCAACCTAGGC
* * * * * * ** *
12492541 GCTTGGAT-GTGTGGGAGCCTCGGACACCATCGG-CACTTTGGTGCTTGGAT-GTGCGGGAGCCT
190 CCCTGG-TCGTGCGGGAGCCTCGG-CACCATCGGTAACCTAGGCCCCTGG-TCGTGCGGGAGCCT
*** * * * *
12492603 CAAACACCATCGGCAACCTAGGCCCCTGGCCGTGCGGGAGCCTCGGGCACCATTGGCAACCTAGT
252 CGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG
* * * * * *
12492668 CCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGTGGGAGTCTC
316 CCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC
* * * *
12492733 GGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAGAGCCTCGGGACCATCGGTAACCTAGGCC
381 GGACACCATCGGCAACCTAGGCCCCTGGTCGTGAG-GAGCCTCGGGACCATCGGCAACCTAGGCC
* * * * * * *
12492798 CTTGGTCATGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTCGTGCGGGAGCCTCGGG
445 CCTGGTCGTGCGGGAGCCTCGGGCAGCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
* * * * * **
12492863 CACCATCGACACCTTGGTGCTTGGATGTGGGGGAGCCTCAGACACCATCGGCACTTTGGTGCTTG
510 CACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTG
*
12492928 GAT-GTGCGGGAGCCTCGGA
575 G-TCGTGCGGGAGCCTCGGG
* * *
12492947 CACCAACGGCAACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCC
1 CACCATCGGCAACCTAGG-CCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-AACCTAGGCCCT
* * * * *
12493012 TAG-TCGTGCGGGAGCCTTGGACACCATCGACAACCTGGGCCCTTGGTCGTTCGAGAGCCTCGGG
64 TGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTGGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * ** *
12493076 -ACCATCAGTTACCTAGGCCCCTGGTCGTAAGGGAGCCTCTGGCACCATCGGTAACCCT-GGCCC
128 CACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCACCATCGGCAA-CCTAGGCCC
*
12493139 CTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGG
192 CTGGTCGTGCGGGAGCCTC-GGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGG
* * * * *
12493204 CACCATCGACACCCTAGGTCCTTGGTCGTGCGAGAGCCTCGGG-ACCATCGGCACCTTGGCCCTT
256 CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTT
* * *
12493268 GGTCGTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTAGTCGTACGGGAGCCTCGGACA
321 GGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACA
*
12493333 CCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTG
386 CCATCGGCAACCTAGGCCCCTGGTCGTG-AGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTG
* * * * * **
12493398 GTCGTGCGGGAGCCGCGGACAGCATCGGTAACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGG-AC
449 GTCGTGCGGGAGCCTCGGGCAGCATCGG-CACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCAC
* * * * * * *
12493462 CATCGGCAACCTAGG-CCTTTGG-TCGTGCGAGAGCCTCGGGCACAATCAGCACCTACGCCCTTG
513 CATCGGC-ACCTTGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTG
12493525 GTCGTGCGGGAGCCTCGGG
575 GTCGTGCGGGAGCCTCGGG
* * * * * * * * * **
12493544 CACCATCGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGCTTCAGACACCATCGGCACTTTGGTGCT
1 CACCATCGGCAACCTAGG-CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCT
* * * *
12493607 TGGATGTGTGGGAGCCTCGGACACCAACGGCAACCTAGGACCC-TGGTCATGCGGGAGCCTCGGG
64 TGGATGTGCGGGAGCCTCGGACACCATCGGCAACCT-GGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * * *
12493671 CACCATCGGCAACCGAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGACAACCTAGGCCCC
128 CACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCACCATCGGCAACCTAGGCCCC
* * * * *
12493736 TGGTCGTCCGAGAGCCTCGGGACCATCGGTTACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCA
193 TGGTCGTGCGGGAGCCTCGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
* * *
12493801 CCATCGGTAACCTAGGCCAC-TGGTCGTGCTGGAGCCTCGGG-ACCATCGGCACCTTGGCCCTTG
258 CCATCGGCAACCTAGGCC-CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * *
12493864 GTCGTACGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTAGTCGTACGGGAGCCTCGGACAC
322 GTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
* **
12493929 CATCGACAACCTAGTTCCCTGGTCGTGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGG
387 CATCGGCAACCTAGGCCCCTGGTCGTG-AGGAGCCTCGGG-ACCATCGGCAACCTAGGCCCCTGG
* * * * **
12493994 TCGTGCGGGAGCCTCGGGCAGTATTGGCCACCTAGGCCCCTAGTCGTGAGAAAGCCTCGGG-ACC
450 TCGTGCGGGAGCCTCGGGCAGCATCGG-CACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACC
* * * * * * *
12494058 ATTGGCAACCTAGG-CCTTTGG-TCGTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGG
514 ATCGGC-ACCTTGGTGC-TTGGAT-GTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGG
12494121 TCGTGCGGGAGCCTCGGG
576 TCGTGCGGGAGCCTCGGG
* * * * * * * * * * **
12494139 CACCATTGGC-ACCTTGGTGCTTGGAT-GTGGGGGAGACTCAGACACCATCGGCACTTTGGTGCT
1 CACCATCGGCAACCTAGG-CCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCT
* *
12494202 TGGATGTGCTGGAGCCTCGGACACCATCGGCAACCTAGGTCCC-TGGTCGTGCGGGAGCCTCGGG
64 TGGATGTGCGGGAGCCTCGGACACCATCGGCAACCT-GGGCCCTTGGTCGTGCGGGAGCCTCGGG
* * * *
12494266 CACCATCGGCAACCAAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCC
128 CACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCACCATCGGCAACCTAGGCCCC
* *** * * * * ** *
12494331 TGGTCGTCCAAAAGCCTCGGTACCATCGGCT-ACCTAGGCCGCTAGTCGTACAAGAGCCTCTGGC
193 TGGTCGTGCGGGAGCCTCGGCACCATCGG-TAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGC
* * * *
12494395 ACCATCAGCAACCTAGGCCTTTGGTCGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCT
257 ACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTT
* * * * *
12494460 AGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTAGGCCCTTGGTCATGCGGGAGCCTCGG-G
321 GGTCGTGCGGGAGCCTCGGACACCATCGGCAACC-TAGGCCCTTGGTCGTGCGGGAGCCTCGGAC
* * * * * *
12494523 ACCATCGGC-ACCTTGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTT
385 ACCATCGGCAACCTAGGCCCCTGGTCGTG-AGGAGCCTCGG-GACCATCGGCAACCTAGGCCCCT
* * * * * *
12494587 GGTTGTACGGGAGCCTCGGGAAGCATCGGCAAACTAGGACCCTGGTCGTGCGGGAGCCTAGGGCA
448 GGTCGTGCGGGAGCCTCGGGCAGCATCGGC-ACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
*
12494652 CCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGG
512 CCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGC-ACCTAGGCCCTTGG
*
12494717 TCGTTGCAGGAGCCTCGGG
576 TCG-TGCGGGAGCCTCGGG
* * * * *
12494736 CACCATCGGTAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCT
1 CACCATCGGCAACCTAGGCC-TTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGG-CCCT
* * * * * * **
12494801 CGGATATGCGGGAGCCTC-AAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGG
64 TGGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTGGGCCCTTGG-TCGTGCGGGAGCCTCGG
* * *
12494863 ACACCATAGGCAACCTAGG
127 GCACCATCGGTAACCTAGG
12494882 ACGTTGGATG
Statistics
Matches: 2133, Mismatches: 337, Indels: 119
0.82 0.13 0.05
Matches are distributed among these distances:
594 3 0.00
595 1081 0.51
596 325 0.15
597 402 0.19
598 253 0.12
599 69 0.03
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (593 bp):
CACCATCGGCAACCTAGGCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGAACCTAGGCCCTTG
GATGTGCGGGAGCCTCGGACACCATCGGCAACCTGGGCCCTTGGTCGTGCGGGAGCCTCGGGCAC
CATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCACCATCGGCAACCTAGGCCCCTGG
TCGTGCGGGAGCCTCGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCA
TCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTCG
TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCCTGGTCGTGAGGAGCCTCGGGACCATCGGCAACCTAGGCCCCTGGTCGTGC
GGGAGCCTCGGGCAGCATCGGCACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
CCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATCGGCACCTAGGCCCTTGGTCGTGCGGGA
GCCTCGGG
Found at i:12493253 original size:681 final size:684
Alignment explanation
Indices: 12491824--12494789 Score: 3121
Period size: 681 Copynumber: 4.4 Consensus size: 684
12491814 GTGCTCGGAT
* * * * * *
12491824 GTGCGAGAGCGTCGG-CACCATCGG-TAACCTAGGCCCTTGGTCATGCGGGAGCCTCGGGCACTA
1 GTGCGGGAGCCTCGGACACCATCGGCT-ACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCA
* * **
12491887 TCGGTAACCTAGG-CCCTTGGTCGTACAAGAGCCTCA-GCACCATCGGCAACCTAGGCCCTTGGT
65 TCGGCAACCTAGGTCCC-TGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGT
* * * * *
12491950 CGTGCGGGAACCTCAGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
129 CGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCA
* * * * * ** * * *
12492015 TCGACAAACTAGGCCCTTGGTC-TCGTGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTTGC
194 TCGGCAACCTAGGCCCTTGGTCGT-GCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGT
* * ** *
12492078 CGTGTGGGAGCCTCAGACACCATTGGTAACCTAGGCCCTTGGATGTGCG-GAAGCCTCAGACACC
258 CGTGAGAGAGCCTC-GGGACCATCGGTAACCTAGGCCCTTGGATGTGCGAG-AGCCTCAGACACC
* * * * * *
12492142 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTTGGACACCATCTGCAACCTAGGCCCCTGGT
321 ATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGTCCCTGGA
* * * * * *
12492207 TGTGCGGGAGCCTCGGGCAACATCGGCAACCTAGGCCCTTGGTCGGGCAGGAGCCTCGGACACTA
385 TGTGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCA
* * * ** * * * *
12492272 TCGG-TACCTTGGTGCTTGGAT-GTGCGGGAGCCT-GGAACACCATCGGCAACCTAGGCCCTTGG
450 ACGGCAACCTAGGACCCTGG-TCGTGCGGGAGCCTCGG-GCACCATCGGCAACCTAGGCCCCTAG
* * * * * * *
12492334 ACATGCCGGAGCCTCGGGCACCATCGATAACCTAGGCCCTCGGTCGTGCGGGAGCCTCGGGCACC
513 TCGTGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACC
* **** * *
12492399 ATCGGCAACCTTA-GCCCTTGGTCGTGCGAGAGCCTCGGGCACCATTTCCAACCTAAGCCCTTGG
578 ATCGGCAACC-TAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGG
* *
12492463 TCGTG-GGAGAGCCTCGGCACCATCGGTAATCTAGG-CCCTGGGTC
642 TCGTGCGG-GAGCCTCGGGACCATCGG-AACCTAGGCCCCT-GGTC
* ** **
12492507 GTGCGGGAGCCTCTGG-CACCATCGGC-ACCTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACACC
1 GTGCGGGAGCCTC-GGACACCATCGGCTACCTAGGCCCTTGG-TCGTACGGGAGCCTCGGACACC
* * * * ** *
12492569 ATCGGC-ACTTTGGTGCTTGGAT-GTGCGGGAGCCTCAAACACCATCGGCAACCTAGGCCCCTGG
64 ATCGGCAACCTAGGTCCCTGG-TCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGG
* * * *
12492632 CCGTGCGGGAGCCTCGGGCACCATTGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACC
128 TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACC
* * * *
12492697 ATCGGCAACCTAGGCCCCTGGTCGTGTGGGAGTCTCGGGCAGCATCGGCAACCTAGGCCCCTAGT
193 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGT
* * *
12492762 CGTGAGAGAGCCTCGGGACCATCGGTAACCTAGGCCCTTGG-TCATGCGAGAGCCTCGGGCACCA
258 CGTGAGAGAGCCTCGGGACCATCGGTAACCTAGGCCCTTGGAT-GTGCGAGAGCCTCAGACACCA
* * * * *
12492826 TCAGCACCTACGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGAC-ACCTTGGTGCTTGGATG
322 TCAGCACCTACGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGTCCCTGGATG
* * * **
12492890 TGGGGGAGCCTCAGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCAA
387 TGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCAA
*
12492953 CGGCAACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTCG
451 CGGCAACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCG
* * *
12493018 TGCGGGAGCCTTGGACACCATCGACAACCTGGGCCCTTGGTCGTTCGAGAGCCTCGGG-ACCATC
516 TGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
* ** ** * *
12493082 AGTTACCTAGGCCCCTGGTCGTAAGGGAGCCTCTGGCACCATCGGTAACCCT-GGCCCCTGGTCG
581 GGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAA-CCTAGGCCCCTGGTCG
12493146 TGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
645 TGCGGGAGCCTCGGG-ACCATCGG-AACCTAGGCCCCTGGTC
* * * * * * *
12493188 GTGCGAGAGCCTCGGGCACCATCGAC-ACCCTAGGTCCTTGGTCGTGCGAGAGCCTCGG-GACCA
1 GTGCGGGAGCCTCGGACACCATCGGCTA-CCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCA
* * *
12493251 TCGGC-ACCTTGG-CCCTTGGTCGTGCGGGAGCCTC-GGACACCATCGGCTACCTAGGCCCTTAG
65 TCGGCAACCTAGGTCCC-TGGTCGTGCGGGAGCCTCAGG-CACCATCGGCAACCTAGGCCCTTGG
* *
12493313 TCGTACGGGAGCCTCGGACACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACC
128 TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACC
* * * * *
12493378 ATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCGCGGACAGCATCGGTAACCTAGGCCCCTAGT
193 ATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGT
* * * * * *
12493443 CGTGAGAAAGCCTCGGGACCATCGGCAACCTAGGCCTTTGG-TCGTGCGAGAGCCTCGGGCACAA
258 CGTGAGAGAGCCTCGGGACCATCGGTAACCTAGGCCCTTGGAT-GTGCGAGAGCCTCAGACACCA
* * * *
12493507 TCAGCACCTACGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGATG
322 TCAGCACCTACGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGTCCCTGGATG
* * * * ** *
12493571 TGGGGGAGCTTCAGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACACCAA
387 TGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGACACCAA
* * *
12493634 CGGCAACCTAGGACCCTGGTCATGCGGGAGCCTCGGGCACCATCGGCAACCGAGGCCCCTGGTCG
451 CGGCAACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCG
* * *
12493699 TGCGGGAGCCTCAGACACCATCGACAACCTAGGCCCCTGGTCGTCCGAGAGCCTCGGG-ACCATC
516 TGCGGGAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATC
** * * *
12493763 GGTTACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCACCATCGGTAACCTAGGCCACTGGTCGT
581 GGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGT
* * * *
12493828 GCTGGAGCCTCGGGACCATCGGCACCTTGGCCCTTGGTC
646 GCGGGAGCCTCGGGACCATCGGAACCTAGGCCCCTGGTC
* *
12493867 GTACGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTAGTCGTACGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCAT
* * ** * *
12493932 CGACAACCTAGTTCCCTGGTCGTGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCG
66 CGGCAACCTAGGTCCCTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCG
* ** * * * *
12493997 TGCGGGAGCCTCGGGCAGTATTGGCCACCTAGGCCCCTAGTCGTG-AGAAAGCCTCGGG-ACCAT
131 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAG-GAGCCTCGGGCACCAT
* * * * * * *
12494060 TGGCAACCTAGGCCTTTGGTCGTGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCCTTGGTCG
195 CGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCG
* * * * * ** * * *
12494124 TGCGGGAGCCTCGGGCACCATTGG-CACCTTGGTGCTTGGATGTGGGGGAGACTCAGACACCATC
260 TGAGAGAGCCTCGGG-ACCATCGGTAACCTAGGCCCTTGGATGTGCGAGAGCCTCAGACACCATC
* * ** ** *
12494188 GGCACTTTGGTGCTTGGAT-GTGCTGGAGCCTCGGACACCATCGGCAACCTAGGTCCCTGG-TCG
324 AGCACCTACGCCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGTCCCTGGAT-G
* * * * * *
12494251 TGCGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC
387 TGCGGGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAAC
* * * *** * * *
12494316 GACAACCTAGGCCCCTGGTCGTCCAAAAGCCTC-GGTACCATCGGCTACCTAGGCCGCTAGTCGT
452 GGCAACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGT
* ** * * *
12494380 ACAAGAGCCTCTGG-CACCATC-AGCAACCTAGGCCTTTGGTCGTGCGGGAGCCTTGGGCACCAT
517 GCGGGAGCCTC-GGACACCATCGA-CAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
* * *
12494443 CGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATCGG-CACCTTAGGCCCTTGGTC
580 CGGCAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACC-TAGGCCCCTGGTC
* * * *
12494507 ATGCGGGAGCCTCGGGACCATCGGCACCTTGGCCCTTGGTC
644 GTGCGGGAGCCTCGGGACCATCGGAACCTAGGCCCCTGGTC
* *
12494548 GTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTTGTACGGGAGCCTCGGGA-AGCA
1 GTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTCGTACGGGAGCCTC-GGACACCA
* * * **
12494612 TCGGCAAACTAGGACCCTGGTCGTGCGGGAGCCT-AGGGCACCATCGGC-ACCTTGGTGCTTGGA
65 TCGGCAACCTAGGTCCCTGGTCGTGCGGGAGCCTCA-GGCACCATCGGCAACCTAGGCCCTTGG-
* *
12494675 T-GTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTTGCAGGAGCCTCGGGCAC
128 TCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCG-TGCAGGAGCCTCGGGCAC
* * *
12494739 CATCGGTAACCTAGGCCATTGGTCGTGCGAGAGCCTCGGGCACCATCGGCA
192 CATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
12494790 CCTTGGTGCC
Statistics
Matches: 1942, Mismatches: 291, Indels: 100
0.83 0.12 0.04
Matches are distributed among these distances:
679 154 0.08
680 323 0.17
681 1075 0.55
682 145 0.07
683 210 0.11
684 35 0.02
ACGTcount: A:0.17, C:0.33, G:0.32, T:0.18
Consensus pattern (684 bp):
GTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTCGTACGGGAGCCTCGGACACCAT
CGGCAACCTAGGTCCCTGGTCGTGCGGGAGCCTCAGGCACCATCGGCAACCTAGGCCCTTGGTCG
TGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCCTGGTCGTGCAGGAGCCTCGGGCACCATC
GGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGT
GAGAGAGCCTCGGGACCATCGGTAACCTAGGCCCTTGGATGTGCGAGAGCCTCAGACACCATCAG
CACCTACGCCCTTGGTCGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGTCCCTGGATGTGCG
GGAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAACGGCA
ACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGG
GAGCCTCGGACACCATCGACAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGCAA
CCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGGG
AGCCTCGGGACCATCGGAACCTAGGCCCCTGGTC
Found at i:12494816 original size:43 final size:42
Alignment explanation
Indices: 12491824--12494904 Score: 2728
Period size: 43 Copynumber: 72.3 Consensus size: 42
12491814 GTGCTCGGAT
* * *
12491824 GTGCGAGAGCGTC-GGCACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * *
12491866 ATGCGGGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* ** *
12491909 GTACAAGAGCCTC-AGCACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
12491951 GTGCGGGAACCTCAGACACCATCGGAAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* *
12491994 GTGCGGGAGCCTCGGGCACCATCGACAAACTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * ** * *
12492037 -TCGTGGGAGCCTTGGGCACCATCGGCACCTTGGTGCTTTGCC
1 GT-GCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * * * *
12492079 GTGTGGGAGCCTCAGACACCATTGGTAACCTAGGCCCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGG-TC
* * *
12492122 GTGCGGAAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * * *
12492165 GTGCGGGAGCCTTGGACACCATCTGCAACCTAGGCCCCTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
*
12492208 GTGCGGGAGCCTCGGGCAACATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * * * * **
12492251 GGGCAGGAGCCTCGGACACTATCGGTACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* *
12492293 GTGCGGGAGCCT-GGAACACCATCGGCAACCTAGGCCCTTGGAC
1 GTGCGGGAGCCTCGG-GCACCATCGGC-ACCTAGGCCCTTGGTC
* * ** *
12492336 ATGCCGGAGCCTCGGGCACCATCGATAACCTAGGCCCTCGGTC
1 GTGCGGGAGCCTCGGGCACCATCG-GCACCTAGGCCCTTGGTC
12492379 GTGCGGGAGCCTCGGGCACCATCGGCAACCTTA-GCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACC-TAGGCCCTTGGTC
* *** *
12492422 GTGCGAGAGCCTCGGGCACCATTTCCAACCTAAGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
12492465 GTG-GGAGAGCCTC-GGCACCATCGGTAATCTAGGCCCTGGGTC
1 GTGCGG-GAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * **
12492507 GTGCGGGAGCCTCTGGCACCATCGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * * **
12492549 GTGTGGGAGCCTCGGACACCATCGGCACTTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
*** * *
12492591 GTGCGGGAGCCTCAAACACCATCGGCAACCTAGGCCCCTGGCC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
12492634 GTGCGGGAGCCTCGGGCACCATTGGCAACCTAGTCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
12492677 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * * *
12492720 GTGTGGGAGTCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
12492763 GTGAGAGAGCCTCGGG-ACCATCGGTAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * * *
12492805 ATGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * **
12492847 GTGCGGGAGCCTCGGGCACCATCGACACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * * * **
12492889 GTGGGGGAGCCTCAGACACCATCGGCACTTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* *
12492931 GTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCCTTGGTC
* * *
12492974 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * * *
12493017 GTGCGGGAGCCTTGGACACCATCGACAACCTGGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * ** *
12493060 GTTCGAGAGCCTCGGG-ACCATCAGTTACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATC-GGCACCTAGGCCCTTGGTC
** * * *
12493102 GTAAGGGAGCCTCTGGCACCATCGGTAACCCT-GGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CA-CCTAGGCCCTTGGTC
* *
12493145 GTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * *
12493188 GTGCGAGAGCCTCGGGCACCATCGACACCCTAGGTCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGTC
* *
12493231 GTGCGAGAGCCTCGGG-ACCATCGGCACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* *
12493272 GTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
12493315 GTACGGGAGCCTCGGACACCATCGGCAACCTAGTCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
12493358 GTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * * * *
12493401 GTGCGGGAGCCGCGGACAGCATCGGTAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* ** *
12493444 GTGAGAAAGCCTCGGG-ACCATCGGCAACCTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
12493486 GTGCGAGAGCCTCGGGCACAATCAGCACCTACGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* **
12493528 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * * * * **
12493570 GTGGGGGAGCTTCAGACACCATCGGCACTTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * *
12493612 GTGTGGGAGCCTCGGACACCAACGGCAACCTAGGACCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCCTTGGTC
* * *
12493655 ATGCGGGAGCCTCGGGCACCATCGGCAACCGAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
12493698 GTGCGGGAGCCTCAGACACCATCGACAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
12493741 GTCCGAGAGCCTCGGG-ACCATCGGTTACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* *
12493783 GTGCGGGAGCCTCTGGCACCATCGGTAACCTAGGCCAC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCC-CTTGGTC
* *
12493826 GTGCTGGAGCCTCGGG-ACCATCGGCACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * *
12493867 GTACGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
12493910 GTACGGGAGCCTCGGACACCATCGACAACCTAGTTCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAG-GCCCTTGGTC
** *
12493953 GTGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
** * * *
12493996 GTGCGGGAGCCTCGGGCAGTATTGGCCACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* ** * *
12494039 GTGAGAAAGCCTCGGG-ACCATTGGCAACCTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
12494081 GTGCGAGAGCCTCGGGCACCATCAGCACCTACGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* * **
12494123 GTGCGGGAGCCTCGGGCACCATTGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * * * * **
12494165 GTGGGGGAGACTCAGACACCATCGGCACTTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* *
12494207 GTGCTGGAGCCTCGGACACCATCGGCAACCTAGGTCCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCCTTGGTC
* *
12494250 GTGCGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *
12494293 GTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCCTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* *** * *
12494336 GTCCAAAAGCCTC-GGTACCATCGGCTACCTAGGCCGC-TAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCC-CTTGGTC
* ** * * *
12494378 GTACAAGAGCCTCTGGCACCATCAGCAACCTAGGCCTTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
12494421 GTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTAGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
*
12494464 GTGCGAGAGCCTCGGGCACCATCGGCACCTTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACC-TAGGCCCTTGGTC
* *
12494507 ATGCGGGAGCCTCGGG-ACCATCGGCACCTTGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
* *
12494548 GTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTGGTT
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * * *
12494591 GTACGGGAGCCTCGGGAAGCATCGGCAAACTAGGACCC-TGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGG-CCCTTGGTC
* * **
12494634 GTGCGGGAGCCTAGGGCACCATCGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* *
12494676 GTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTC
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTC
* * *
12494719 GTTGCAGGAGCCTCGGGCACCATCGGTAACCTAGGCCATTGGTC
1 G-TGCGGGAGCCTCGGGCACCATCGG-CACCTAGGCCCTTGGTC
* * * *
12494763 GTGCGAGAGCCTCGGGCACCATCGGCACCTTGGTGCCTCGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGG-CCCTTGG-TC
* ** * * * **
12494806 ATGCGGGAGCCTCAAGCAGCATTGGCACCTTGGTGCTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG-TC
* * * *
12494848 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-
1 GTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG-TC
*
12494891 GTGCGGGTGCCTCG
1 GTGCGGGAGCCTCG
12494905 AGCAGCAGGG
Statistics
Matches: 2527, Mismatches: 428, Indels: 167
0.81 0.14 0.05
Matches are distributed among these distances:
40 1 0.00
41 83 0.03
42 875 0.35
43 1512 0.60
44 56 0.02
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (42 bp):
GTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGTC
Found at i:12494896 original size:85 final size:85
Alignment explanation
Indices: 12491867--12494926 Score: 1302
Period size: 85 Copynumber: 35.9 Consensus size: 85
12491857 CCCTTGGTCA
* * * * * **
12491867 TGCGGGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTACAAGAGCCTC-AGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* **
12491931 GGCAACCTAGGCCCTTGG-TCG
66 GGC-ACCTTGGTGCTTGGAT-G
* * * * **
12491952 TGCGGGAACCTCAGACACCATCGGAAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* * * ** *
12492017 GACAAACTAGGCCCTTGG-TC
66 GGC-ACCTTGGTGCTTGGATG
* * * * ** * * *
12492037 TCGTGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTTGCCGTGTGGGAGCCTC-AGACACCA
1 T-GCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCA
* * * **
12492100 TTGGTAACCTAGGCCCTTGGATG
64 TCGG-CACCTTGGTGCTTGGATG
* * * **
12492123 TGCGGAAGCCTCAGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCT-TGGACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCAT
* * ** * *
12492187 CTGCAACCTAGGCCCCTGGTTG
65 CGGC-ACCTTGGTGCTTGGATG
* * * * * * *
12492209 TGCGGGAGCCTCGGGCAACATCGGCAACCTAGGCCCTTGGTCGGGCAGGAGCCTC-GGACACTAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCAT
*
12492273 CGGTACCTTGGTGCTTGGATG
65 CGGCACCTTGGTGCTTGGATG
* * * * **
12492294 TGCGGGAGCCT-GGAACACCATCGGCAACCTAGGCCCTTGGACATGCCGGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGG-ACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCAT
** * ** *
12492358 CGATAACCTAGGCCCTCGG-TCG
65 CG-GCACCTTGGTGCTTGGAT-G
* * * **
12492380 TGCGGGAGCCTCGGGCACCATCGGCAACCTTA-GCCCTTGGTCGTGCGAGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACC-TAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCAT
*** ** **
12492444 TTCCAACCTAAGCCCTTGG-TCG
65 CGGC-ACCTTGGTGCTTGGAT-G
* * * * **
12492466 TG-GGAGAGCCTCGG-CACCATCGGTAATCTAGGCCCTGGGTCGTGCGGGAGCCTCTGGCACCAT
1 TGCGG-GAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCAT
12492529 CGGCACCTTGGTGCTTGGATG
65 CGGCACCTTGGTGCTTGGATG
* * * ** *
12492550 TGTGGGAGCCTCGGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGGGAGCCTCAAACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCAAGCACCAT
* ** * **
12492613 CGGCAACCTAGGCCCCTGGCCG
65 CGGC-ACCTTGGTGCTTGGATG
* * ** * * **
12492635 TGCGGGAGCCTCGGGCACCATTGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* ** *
12492700 GGCAACCTAGGCCCCTGG-TCG
66 GGC-ACCTTGGTGCTTGGAT-G
* * * * * * * * * * *
12492721 TGTGGGAGTCTCGGGCAGCATCGGCAACCTAGGCCCCTAGTCGTGAGAGAGCCTC-GGGACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* * ** *
12492785 GGTAACCTAGGCCCTTGG-TCA
66 GG-CACCTTGGTGCTTGGAT-G
* * * * * **
12492806 TGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
*
12492870 GACACCTTGGTGCTTGGATG
66 GGCACCTTGGTGCTTGGATG
* * * * ** *
12492890 TGGGGGAGCCTCAGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGGGAGCCTC-GGACACCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCAAG-CACCA
* * ** *
12492952 ACGGCAACCTAGGACCCTGG-TCG
64 TCGGC-ACCTTGGTGCTTGGAT-G
* * * * * **
12492975 TGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTAGTCGTGCGGGAGCCT-TGGACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCAT
* * **
12493039 CGACAACCTGGGCCCTTGG-TCG
65 CGGC-ACCTTGGTGCTTGGAT-G
* * * * ** * * ** **
12493061 TTCGAGAGCCTCGG-GACCATCAGTTACCTAGGCCCCTGGTCGTAAGGGAGCCTCTGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* * ** *
12493125 GGTAACCCTGGCCCCTGG-TCG
66 GG-CACCTTGGTGCTTGGAT-G
* * * * * **
12493146 TGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* * *
12493211 GACACCCTAGGTCCTTGG-TCG
66 GGCA-CCTTGGTGCTTGGAT-G
* * * * *
12493232 TGCGAGAGCCTCGG-GACCATCGGC-ACCTTGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCAT
* ** *
12493294 CGGCTACCTAGGCCCTTAG-TCG
65 CGGC-ACCTTGGTGCTTGGAT-G
* ** * * **
12493316 TACGGGAGCCTCGGACACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* ** *
12493381 GGCAACCTAGGCCCCTGG-TCG
66 GGC-ACCTTGGTGCTTGGAT-G
* * * * * * * ** * *
12493402 TGCGGGAGCCGCGGACAGCATCGGTAACCTAGGCCCCTAGTCGTGAGAAAGCCTC-GGGACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* *
12493466 GGCAACCTAGG-CCTTTGG-TCG
66 GGC-ACCTTGGTGC-TTGGAT-G
* * * * * * **
12493487 TGCGAGAGCCTCGGGCACAATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
12493551 GGCACCTTGGTGCTTGGATG
66 GGCACCTTGGTGCTTGGATG
* * * * * ** * *
12493571 TGGGGGAGCTTCAGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGTGGGAGCCTC-GGACACCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCAAG-CACCA
* * ** * *
12493633 ACGGCAACCTAGGACCCTGG-TCA
64 TCGGC-ACCTTGGTGCTTGGAT-G
* * * *
12493656 TGCGGGAGCCTCGGGCACCATCGGCAACCGAGGCCCCTGGTCGTGCGGGAGCCTC-AGACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCAT
* * ** *
12493720 CGACAACCTAGGCCCCTGG-TCG
65 CGGC-ACCTTGGTGCTTGGAT-G
* * * ** * * **
12493742 TCCGAGAGCCTCGG-GACCATCGGTTACCTAGGCCCCTGGTCGTGCGGGAGCCTCTGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* * * *
12493806 GGTAACCTAGG-CCACTGG-TCG
66 GG-CACCTTGGTGC-TTGGAT-G
* * * * * *
12493827 TGCTGGAGCCTCGG-GACCATCGGC-ACCTTGGCCCTTGGTCGTACGGGAGCCTC-GGACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCAT
* ** *
12493889 CGGCTACCTAGGCCCTTAG-TCG
65 CGGC-ACCTTGGTGCTTGGAT-G
* * ** * ** **
12493911 TACGGGAGCCTCGGACACCATCGACAACCTAGTTCCCTGGTCGTGTAGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* ** *
12493976 GGCAACCTAGGCCCCTGG-TCG
66 GGC-ACCTTGGTGCTTGGAT-G
* ** * * * * * * ** * * *
12493997 TGCGGGAGCCTCGGGCAGTATTGGCCACCTAGGCCCCTAGTCGTGAGAAAGCCTC-GGGACCATT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* *
12494061 GGCAACCTAGG-CCTTTGG-TCG
66 GGC-ACCTTGGTGC-TTGGAT-G
* * * * * ** *
12494082 TGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
12494146 GGCACCTTGGTGCTTGGATG
66 GGCACCTTGGTGCTTGGATG
* * * * * ** * *
12494166 TGGGGGAGACTCAGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGCTGGAGCCTC-GGACACCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCAAG-CACCA
* * *
12494228 TCGGCAACCTAGGTCCCTGG-TCG
64 TCGGC-ACCTTGGTGCTTGGAT-G
* * * * **
12494251 TGCGGGAGCCTCGGGCACCATCGGCAACCAAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
* * ** *
12494316 GACAACCTAGGCCCCTGG-TCG
66 GGC-ACCTTGGTGCTTGGAT-G
* *** * * * * * ** **
12494337 TCCAAAAGCCTCGG-TACCATCGGCTACCTAGG-CCGCTAGTCGTACAAGAGCCTCTGGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACC-TTGGTCGTGCGGGAGCCTCAAGCACCAT
* * *
12494400 CAGCAACCTAGG-CCTTTGG-TCG
65 CGGC-ACCTTGGTGC-TTGGAT-G
* * * * * * **
12494422 TGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTAGTCGTGCGAGAGCCTCGGGCACCATC
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
** *
12494487 GGCACCTTAGGCCCTTGG-TCA
66 GGCACCTT-GGTGCTTGGAT-G
* * * *
12494508 TGCGGGAGCCTCGG-GACCATCGGC-ACCTTGGCCCTTGGTCGTGCGGGAGCCTC-GGACACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAG-CACCAT
* ** *
12494570 CGGCTACCTAGGCCCTTGGTTG
65 CGGC-ACCTTGGTGCTTGGATG
* * * * *
12494592 TACGGGAGCCTCGGGA-AGCATCGGCAAACTAGGACCCTGGTCGTGCGGGAGCCT-AGGGCACCA
1 TGCGGGAGCCTC-GGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCA-AGCACCA
12494655 TCGGCACCTTGGTGCTTGGATG
64 TCGGCACCTTGGTGCTTGGATG
* * * **
12494677 TGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGGTCGTTGCAGGAGCCTCGGGCACCAT
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCG-TGCGGGAGCCTCAAGCACCAT
* * *
12494742 CGGTAACCTAGG-CCATTGG-TCG
65 CGG-CACCTTGGTGC-TTGGAT-G
* * * * * * *
12494764 TGCGAGAGCCTCGGGCACCATCGGC-ACCTTGGTGCCTCGGAT-ATGCGGGAGCCTCAAGCAGCA
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGG-ACCTTGG-TCGTGCGGGAGCCTCAAGCACCA
*
12494827 TTGGCACCTTGGTGCTTGGATG
64 TCGGCACCTTGGTGCTTGGATG
* * * * * *
12494849 TGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCGAGCAGCAG
1 TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCAAGCACCAT
* *
12494913 GGGCACCCTGGTGC
65 CGGCACCTTGGTGC
12494927 CTCAGATGTG
Statistics
Matches: 2399, Mismatches: 476, Indels: 200
0.78 0.15 0.07
Matches are distributed among these distances:
83 12 0.01
84 499 0.21
85 917 0.38
86 916 0.38
87 54 0.02
88 1 0.00
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.18
Consensus pattern (85 bp):
TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCAAGCACCATC
GGCACCTTGGTGCTTGGATG
Found at i:12494903 original size:128 final size:128
Alignment explanation
Indices: 12491715--12494936 Score: 1997
Period size: 128 Copynumber: 25.2 Consensus size: 128
12491705 CCTCAAGCAG
* * ** * * * * *
12491715 CATCAGCACCTTGGTGCCTTGGATGTGCAAGAGACTCAGACACCATCGGAAAACTAGGCTCTTGG
1 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
* * * * ** * * *
12491780 TTGTGCTGGAGCCCCGCG-CACCATCAGCACCCT-GGTGCTCGGAT-GTGCGAGAGCGTC-GGCA
66 -TGTGCGGGAGCCTCG-GACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCGGGCA
12491841 C
128 C
* * * * * * * *
12491842 CATCGGTAACCTAGG-CCCTTGG-TCATGCGGGAGCCTCGGGCACTATCGGTAACCTAGGCCCTT
1 CATCGG-CACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* ** * * * * *
12491905 GGTCGTACAAGAGCCTCAG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAACCTCAGACA
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12491969 C
128 C
* * * * * * *
12491970 CATCGGAAACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGACAAACTAGGCCCTT
1 CATCGG-CACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * * * ** * * * * *
12492033 GGTCTCGTGGGAGCCTTGGGCACCATCGGC-ACCTTGGTGCTTTGCCGTGTGGGAGCCTCAGACA
64 GGTGT-GCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12492097 C
128 C
* * * * * * *
12492098 CATTGGTAACCTAGG-CCCTTGGATGTGCGGAAGCCTCAGACACCATCGGCAACCTAGGCCCTTG
1 CATCGG-CACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * * * * *
12492162 GTCGTGCGGGAGCCTTGGACACCATCTGCAACCTAGGCCCCTGGTTGTGCGGGAGCCTCGGGCAA
65 GT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCAC
* * * * * * * * **
12492227 CATCGGCAACCTAGG-CCCTTGG-TCGGGCAGGAGCCTCGGACACTATCGG-TACCTTGGTGCTT
1 CATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * *
12492289 GGATGTGCGGGAGCCT-GGAACACCATCGGCAACCTAGGCCCTTGGACATGCCGGAGCCTCGGGC
64 GG-TGTGCGGGAGCCTCGG-ACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGC
12492353 AC
127 AC
** * * *
12492355 CATCGATAACCTAGG-CCCTCGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTTA-GCCCT
1 CATCG-GCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACC-TAGGCCCT
* * *** * *
12492417 TGGTCGTGCGAGAGCCTCGGGCACCATTTCCAACCTAAGCCCTTGGTCGTG-GGAGAGCCTC-GG
63 TGGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGG-GAGCCTCGGG
12492480 CAC
126 CAC
* * * * * * **
12492483 CATCGGTAATCTAGG-CCCT-GGGTCGTGCGGGAGCCTCTGG-CACCATCGGC-ACCTTGGTGCT
1 CATCGG-CACCTTGGTGCCTCGGAT-GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCCCT
* * * ** ***
12492544 TGGATGTGTGGGAGCCTCGGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGCGGGAGCCTCAAA
63 TGG-TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCGGG
12492607 CAC
126 CAC
* ** ** * * * *
12492610 CATCGGCAACCTAGGCCCCT-GGCCGTGCGGGAGCCTCGGGCACCATTGGCAACCTAGTCCCCTG
1 CATCGGC-ACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * * * * * *
12492674 GTCGTGCAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGTGGGAGTCTCGGGCAG
65 GT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * * * *
12492739 CATCGGCAACCTAGGCCCCT-AG-TCGTGAGAGAGCCTCGG-GACCATCGGTAACCTAGGCCCTT
1 CATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * * * *
12492801 GGTCATGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGGCA
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12492865 C
128 C
* * * * * * **
12492866 CATCGACACCTTGGTG-CTTGGATGTGGGGGAGCCTCAGACACCATCGGC-ACTTTGGTGCTTGG
1 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
* *
12492929 ATGTGCGGGAGCCTCGGACACCAACGGCAACCTAGGACCCTGGTCGTGCGGGAGCCTCGGGCAC
66 -TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCAC
* * ** * * * *
12492993 CATCGGTAACCTAGGCCCCT-AG-TCGTGCGGGAGCCTTGGACACCATCGACAACCTGGGCCCTT
1 CATCGG-CACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * * ** * * ** *
12493056 GGTCGTTCGAGAGCCTCGG-GACCATCAGTTACCTAGGCCCCTGGTCGTAAGGGAGCCTCTGGCA
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12493120 C
128 C
* * ** * * *
12493121 CATCGGTAACCCTGGCCCCT-GG-TCGTGCGGGAGCCTCGGGCACCATCGGTAACCTAGGCCCCT
1 CATCGG-CACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * * * *
12493184 GGTCGTGCGAGAGCCTCGGGCACCATCGACACCCTAGGTCCTTGGTCGTGCGAGAGCCTCGGG-A
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12493248 C
128 C
* * * *
12493249 CATCGGCACCTTGG-CCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTA
1 CATCGGCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* ** * *
12493312 GTCGTACGGGAGCCTCGGACACCATCGGCAACCTAGTCCCCTGGTCGTGCAGGAGCCTCGGGCAC
65 GT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCAC
* ** * * * *
12493377 CATCGGCAACCTAGGCCCCT-GG-TCGTGCGGGAGCCGCGGACAGCATCGGTAACCTAGGCCCCT
1 CATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * ** * *
12493440 AGTCGTGAGAAAGCCTCGG-GACCATCGGCAACCTAGG-CCTTTGGTCGTGCGAGAGCCTCGGGC
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACC-TTGGTCGTGCGGGAGCCTCGGGC
12493503 AC
127 AC
* * ** * * * * **
12493505 AATCAGCACCTACG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTG
1 CATCGGCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * * * * ** * *
12493567 GATGTGGGGGAGCTTCAGACACCATCGGC-ACTTTGGTGCTTGGAT-GTGTGGGAGCCTCGGACA
65 G-TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCGGGCA
12493630 C
128 C
* * ** * * * *
12493631 CAACGGCAACCTAGGACCCT-GG-TCATGCGGGAGCCTCGGGCACCATCGGCAACCGAGGCCCCT
1 CATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * * * *
12493694 GGTCGTGCGGGAGCCTCAGACACCATCGACAACCTAGGCCCCTGGTCGTCCGAGAGCCTCGGG-A
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12493758 C
128 C
* * ** *
12493759 CATCGGTTACCTAGGCCCCT-GG-TCGTGCGGGAGCCTCTGG-CACCATCGGTAACCTAGGCCAC
1 CATCGG-CACCTTGGTGCCTCGGAT-GTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGCC-C
* * * * * *
12493821 -TGGTCGTGCTGGAGCCTCGG-GACCATCGGC-ACCTTGGCCCTTGGTCGTACGGGAGCCTCGGA
62 TTGGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGG
12493883 CAC
126 CAC
* * ** * * *
12493886 CATCGGCTACCTAGG-CCCTTAG-TCGTACGGGAGCCTCGGACACCATCGACAACCTAGTTCCC-
1 CATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAG-GCCCT
** * * *
12493948 TGGTCGTGTAGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGC
63 TGGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGC
*
12494013 AG
127 AC
* * * ** * * ** * * *
12494015 TATTGGCCACCTAGGCCCCT-AG-TCGTGAGAAAGCCTCGG-GACCATTGGCAACCTAGGCCTTT
1 CATCGG-CACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* * * * *
12494077 GGTCGTGCGAGAGCCTCGGGCACCATCAGC-ACCTACGCCCTTGGTCGTGCGGGAGCCTCGGGCA
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12494141 C
128 C
* * * * * * * **
12494142 CATTGGCACCTTGGTG-CTTGGATGTGGGGGAGACTCAGACACCATCGGC-ACTTTGGTGCTTGG
1 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
* * *
12494205 ATGTGCTGGAGCCTCGGACACCATCGGCAACCTAGGTCCCTGGTCGTGCGGGAGCCTCGGGCAC
66 -TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCAC
** ** * * *
12494269 CATCGGCAACCAAGGCCCCT-GG-TCGTGCGGGAGCCTCGGGCACCATCGACAACCTAGGCCCCT
1 CATCGGC-ACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTT
* *** * * * * * ** *
12494332 GGTCGTCCAAAAGCCTCGG-TACCATCGGCTACCTAGG-CCGCTAGTCGTACAAGAGCCTCTGGC
64 GGT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACC-TTGGTCGTGCGGGAGCCTCGGGC
12494395 AC
127 AC
* * * * * *
12494397 CATCAGCAACC-TAG-GCCTTTGG-TCGTGCGGGAGCCTTGGGCACCATCGGCAACCTAGGCCCC
1 CATCGGC-ACCTTGGTGCC-TCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCT
* * * * *
12494459 TAGTCGTGCGAGAGCCTCGGGCACCATCGGC-ACCTTAGGCCCTTGGTCATGCGGGAGCCTCGGG
63 TGGT-GTGCGGGAGCCTCGGACACCATCGGCAACC-TAGGACCTTGGTCGTGCGGGAGCCTCGGG
12494523 -AC
126 CAC
* * *
12494525 CATCGGCACCTTGG-CCCTTGG-TCGTGCGGGAGCCTCGGACACCATCGGCTACCTAGGCCCTTG
1 CATCGGCACCTTGGTGCCTCGGAT-GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTG
* * * * *
12494588 GTTGTACGGGAGCCTCGGGA-AGCATCGGCAAACTAGGACCCTGGTCGTGCGGGAGCCTAGGGCA
65 G-TGTGCGGGAGCCTC-GGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCA
12494652 C
128 C
* *
12494653 CATCGGCACCTTGGTG-CTTGGATGTGCGGGAGCCTTGGACACCATCGGCAACCTAGGCCCTTGG
1 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
* * * *
12494717 TCGTTGCAGGAGCCTCGGGCACCATCGGTAACCTAGG-CCATTGGTCGTGCGAGAGCCTCGGGCA
66 T-G-TGCGGGAGCCTCGGACACCATCGGCAACCTAGGACC-TTGGTCGTGCGGGAGCCTCGGGCA
12494781 C
128 C
* * * * * **
12494782 CATCGGCACCTTGGTGCCTCGGATATGCGGGAGCCTC-AAGCAGCATTGGC-ACCTTGGTGCTTG
1 CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTG
* * * *
12494845 GATGTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCGAGCA
65 G-TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGG-TCGTGCGGGAGCCTCGGGCA
*
12494909 G
128 C
** * *
12494910 CAGGGGCACCCTGGTGCCTCAGATGTG
1 CATCGGCACCTTGGTGCCTCGGATGTG
12494937 TGGGCTAAAG
Statistics
Matches: 2504, Mismatches: 482, Indels: 217
0.78 0.15 0.07
Matches are distributed among these distances:
125 4 0.00
126 229 0.09
127 659 0.26
128 1064 0.42
129 508 0.20
130 40 0.02
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (128 bp):
CATCGGCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG
TGTGCGGGAGCCTCGGACACCATCGGCAACCTAGGACCTTGGTCGTGCGGGAGCCTCGGGCAC
Found at i:12500593 original size:23 final size:23
Alignment explanation
Indices: 12500563--12500611 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
12500553 GGAAACATGA
12500563 CACAACGGGGGCCGTGGTCCAGG
1 CACAACGGGGGCCGTGGTCCAGG
12500586 CACAACGGGGGCCGTGGTCCAGG
1 CACAACGGGGGCCGTGGTCCAGG
12500609 CAC
1 CAC
12500612 TTGTTCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.18, C:0.33, G:0.41, T:0.08
Consensus pattern (23 bp):
CACAACGGGGGCCGTGGTCCAGG
Found at i:12501221 original size:58 final size:59
Alignment explanation
Indices: 12501130--12501243 Score: 158
Period size: 58 Copynumber: 1.9 Consensus size: 59
12501120 CCCTCCCTAA
* * *
12501130 TCCCAAAAGGTAGAATTTAGATACCGTTACATGTTCGGTACCCAATAAAAAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAAAAAATGAACCG
* * * *
12501189 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTTGGTGCCCAACAATAAATGAA
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAAAAAATGAA
12501244 TCATCCTTGT
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
58 44 0.92
59 4 0.08
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAAAAAATGAACCG
Found at i:12504370 original size:93 final size:93
Alignment explanation
Indices: 12504262--12504432 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
12504252 GCCCATAAGT
* *
12504262 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAAGTAAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTAAACTCGGACTCAACTCAA
12504327 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
12504355 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTAAACTCGGACTCAACTCAA
*
12504420 CGAGTTCGGATGC
66 CGAGCTCGGATGC
12504433 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTTGCATCCATAAGTAAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:12504429 original size:46 final size:46
Alignment explanation
Indices: 12504254--12504429 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
12504244 TGTAACCCGC
* *
12504254 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
* * *
12504300 CCATAAGTAAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-ATTTGCAT
* *
12504350 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
*
12504393 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
12504430 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 8 0.07
44 1 0.01
46 64 0.58
47 27 0.25
49 1 0.01
50 7 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTTGCAT
Found at i:12510248 original size:58 final size:59
Alignment explanation
Indices: 12510157--12510276 Score: 179
Period size: 58 Copynumber: 2.1 Consensus size: 59
12510147 CCCTCCCCAA
* *
12510157 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATAAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
* * * *
12510216 TCCC-AAAGCTAGAATTCAGATATCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
12510274 TCC
1 TCC
12510277 TTGTCCCTCC
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
58 51 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATAAATGAACCG
Found at i:12516063 original size:43 final size:43
Alignment explanation
Indices: 12516016--12516738 Score: 664
Period size: 43 Copynumber: 16.7 Consensus size: 43
12516006 TGGATATGCA
** * *
12516016 GGAGCCTCGGAAACCATCGGCAACTTAGGTCCC-CGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTTGGTCGTGCG
* * *
12516059 GGAGCCTCAGGCACCATCGGTAACCAAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
12516102 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
12516145 AGAGCCTC-GGCGCCATCGGTAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12516187 GGAGCCTTGGACACCATCGGCAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
12516230 GGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGGTCATGGCCCCTGGTCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTC---G----T-G-CG
* * * * *
12516281 TGCGGGAGC-CTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 -G-GAG-CCTC-GGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12516328 GGAGCCTCGGACACCATCGACAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12516371 AGAGCCTCGGG-AGCATCGAC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
12516412 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * * * *
12516454 GGAGCCTCAGACACCACCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * **
12516497 GGAGCCTCGGGTACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* ** *
12516539 AGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12516582 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
12516625 GGAGCCTAGGGCACCATTGGC-ACCTTGGTGCCTTAGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG-CCCTT-GGTCGTGCG
* * * * ** *
12516668 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTCGGAT-GTGCG
1 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
12516710 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGGCACCATCGGCAACCTAGG
12516739 ACGTTGGATG
Statistics
Matches: 560, Mismatches: 91, Indels: 58
0.79 0.13 0.08
Matches are distributed among these distances:
41 31 0.06
42 168 0.30
43 312 0.56
44 4 0.01
45 4 0.01
46 1 0.00
47 2 0.00
48 1 0.00
49 2 0.00
50 1 0.00
51 2 0.00
52 1 0.00
53 4 0.01
54 3 0.01
55 10 0.02
56 14 0.03
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:12516202 original size:85 final size:86
Alignment explanation
Indices: 12516016--12516738 Score: 614
Period size: 85 Copynumber: 8.3 Consensus size: 86
12516006 TGGATATGCA
* * *
12516016 GGAGCCTCGGAAACCATCGGCAACTTAGGTCCC-CGGTCGTGCGGGAGCCTCAGGCACCATCGGT
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGT
*
12516080 AACCAAGGCCCTTGGTCGTGCG
65 AACCTAGGCCCTTGGTCGTGCG
* * *
12516102 GGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTC-GGCGCCATCGGTA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTA
*
12516166 ACCTATGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * *
12516187 GGAGCCTTGGACACCATCGGCAACCTATGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-C
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTA
12516251 ACCTAGGCCCTTGGTCATGGCCCCTGGTCG
66 ACCTAGGCCCTTGGTC---G----T-G-CG
* * * * * *
12516281 TGCGGGAGC-CTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTC-GGACACCA
1 -G-GAG-CCTC-GGA-CACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGG-CACCA
** *
12516344 TCGACAACCTAGGCCCCTGGTCGTGCG
60 TCGGTAACCTAGGCCCTTGGTCGTGCG
* * * * * *
12516371 AGAGCCTCGG-GAGCATCGAC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-C
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTA
* **
12516433 ACCTTGGTGCTTGGAT-GTGCG
66 ACCTAGGCCCTTGG-TCGTGCG
* * * * * * *
12516454 GGAGCCTCAGACACCACCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGG-C
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTA
* **
12516518 ACCTTGGTGCTTGGAT-GTGCG
66 ACCTAGGCCCTTGG-TCGTGCG
* * * *
12516539 AGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTA
12516604 ACCTAGGCCCTTGGTCGTGCG
66 ACCTAGGCCCTTGGTCGTGCG
* * * * * * * *
12516625 GGAGCCTAGGGCACCATTGGC-ACCTTGGTGCCTTAGAT-GTGCGGGAGCCTC-GAGCAGCATTG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTT-GGTCGTGCGGGAGCCTCAG-GCACCATCG
* * ** *
12516687 G-CACCTTGGTGCTCGGAT-GTGCG
63 GTAACCTAGGCCCTTGG-TCGTGCG
*
12516710 GGAGCCTCGGACACCATAGGCAACCTAGG
1 GGAGCCTCGGACACCATCGGCAACCTAGG
12516739 ACGTTGGATG
Statistics
Matches: 525, Mismatches: 82, Indels: 60
0.79 0.12 0.09
Matches are distributed among these distances:
83 23 0.04
84 41 0.08
85 262 0.50
86 115 0.22
87 4 0.01
88 4 0.01
90 2 0.00
91 1 0.00
92 2 0.00
93 1 0.00
94 2 0.00
95 1 0.00
96 3 0.01
97 4 0.01
98 45 0.09
99 15 0.03
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.18
Consensus pattern (86 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCAGGCACCATCGGTA
ACCTAGGCCCTTGGTCGTGCG
Found at i:12516304 original size:55 final size:56
Alignment explanation
Indices: 12516215--12516322 Score: 182
Period size: 55 Copynumber: 1.9 Consensus size: 56
12516205 GGCAACCTAT
* * *
12516215 GCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA-CCTAGGCCCTTGGTCATG
1 GCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCATG
12516270 GCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTC
1 GCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTC
12516323 GTGCGGGAGC
Statistics
Matches: 49, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
55 35 0.71
56 14 0.29
ACGTcount: A:0.11, C:0.38, G:0.33, T:0.18
Consensus pattern (56 bp):
GCCCCTGGTCGTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCATG
Found at i:12516763 original size:85 final size:85
Alignment explanation
Indices: 12516280--12516797 Score: 510
Period size: 85 Copynumber: 6.1 Consensus size: 85
12516270 GCCCCTGGTC
* * *
12516280 GTGCGGGAGCCTCGGACACCATCGGCACCCTAGGCCCCTGGTCGTGCGGGAGCCTCGGACACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * ** *
12516345 CGACAACCTAGGCCCCTGG-T
66 CGGC-ACCTTGGTGCTTGGAT
* * * *
12516365 CGTGCGAGAGCCTCGG-GAGCATCGAC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
1 -GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCA
12516428 TCGGCACCTTGGTGCTTGGAT
65 TCGGCACCTTGGTGCTTGGAT
* * * * *
12516449 GTGCGGGAGCCTCAGACACCACCGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
12516514 CGGCACCTTGGTGCTTGGAT
66 CGGCACCTTGGTGCTTGGAT
* * *
12516534 GTGCGAGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTCGTGCCGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
* * **
12516599 CGGTAACCTAGGCCCTTGG-T
66 CGG-CACCTTGGTGCTTGGAT
* * * * * * * *
12516619 CGTGCGGGAGCCTAGGGCACCATTGGC-ACCTTGGTGCCTTAGAT-GTGCGGGAGCCTCGAGCAG
1 -GTGCGGGAGCCTCGGACACCATCGGCAACCTAGG-CCCTT-GGTCGTGCGGGAGCCTCGGGCAC
* *
12516682 CATTGGCACCTTGGTGCTCGGAT
63 CATCGGCACCTTGGTGCTTGGAT
* * * * * * *
12516705 GTGCGGGAGCCTCGGACACCATAGGCAACCTAGGACGTTGGAT-GTGCAGGTGCCTCGAGCAGCA
1 GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCA
** * *
12516769 GGGGCACCCTGGTGCCTCGGAT
65 TCGGCACCTTGGTG-CTTGGAT
12516791 GTGCGGG
1 GTGCGGG
12516798 CTAAAGAAAA
Statistics
Matches: 359, Mismatches: 62, Indels: 22
0.81 0.14 0.05
Matches are distributed among these distances:
83 23 0.06
84 45 0.13
85 197 0.55
86 92 0.26
87 2 0.01
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (85 bp):
GTGCGGGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
CGGCACCTTGGTGCTTGGAT
Found at i:12516775 original size:128 final size:128
Alignment explanation
Indices: 12516280--12516797 Score: 539
Period size: 128 Copynumber: 4.1 Consensus size: 128
12516270 GCCCCTGGTC
* ** *
12516280 GTGCGGGAGCCTCG-GACACCATCGGCACCCTAGGCCCCTGG-TCGTGCGGGAGCCTCGGACACC
1 GTGCGGGAGCCTCGAG-CACCATCGGCA-CCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACC
** * * * * * *
12516343 ATCGACAACCTAGGCCCCTGGTCGTGCGAGAGCCTCGGG-AGCATCGACACCTAGG-CCCTTGG-
63 ATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGA
12516405 T
128 T
* * *
12516406 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCAGACACCAC
1 -GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCAT
* *
12516471 CGGTAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGTACCATCGGCACCTTGGTG-CTTGGAT
65 CGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
* * * ** * *
12516534 GTGCGAGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGG-TCGTGCCGGAGCCTCGGGCACCA
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCA
* * *
12516598 TCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTAGGGCACCATTGGCACCTTGGTGCCTTAGAT
64 TCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
* * * *
12516663 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGACACCATA
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
* * * * * * * ** * *
12516728 GGCAACCTAGGACGTTGGAT-GTGCAGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
66 GGTAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
12516791 GTGCGGG
1 GTGCGGG
12516798 CTAAAGAAAA
Statistics
Matches: 329, Mismatches: 52, Indels: 19
0.82 0.13 0.05
Matches are distributed among these distances:
126 63 0.19
127 68 0.21
128 168 0.51
129 30 0.09
ACGTcount: A:0.16, C:0.31, G:0.35, T:0.18
Consensus pattern (128 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGGACACCATC
GGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCCTTGGAT
Found at i:12516791 original size:43 final size:43
Alignment explanation
Indices: 12516407--12516797 Score: 158
Period size: 43 Copynumber: 9.2 Consensus size: 43
12516397 GCCCTTGGTC
* * * * *
12516407 GTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTG-CTTGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* ** * * * *
12516449 GTGCGGGAGCCTC-AGACACCACCGGTAACCTAG-GCCCCTGG-T
1 GTGCGGGAGCCTCGAG-CAGCATAGGCACCCTGGTGCCTC-GGAT
* * * * * *
12516491 CGTGCGGGAGCCTCGGGTACCATCGGCACCTTGGTG-CTTGGAT
1 -GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * * * * *
12516534 GTGCGAGAGCCTCGAACACCATCGGCAACCTAGG-CCCTTGG-T
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCT-GGTGCCTCGGAT
* * * * * * * *
12516576 CGTGCCGGAGCCTCGGGCACCATCGGTAACCTAGG-CCCTTGG-T
1 -GTGCGGGAGCCTCGAGCAGCATAGGCACCCT-GGTGCCTCGGAT
* * * * * **
12516619 CGTGCGGGAGCCTAGGGCACCATTGGCACCTTGGTGCCTTAGAT
1 -GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* *
12516663 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTG-CTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
* * * * *
12516705 GTGCGGGAGCCTCG-GACACCATAGGCAACCTAGG-ACGTTGGAT
1 GTGCGGGAGCCTCGAG-CAGCATAGGCACCCT-GGTGCCTCGGAT
* * **
12516748 GTGCAGGTGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
12516791 GTGCGGG
1 GTGCGGG
12516798 CTAAAGAAAA
Statistics
Matches: 273, Mismatches: 59, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
41 3 0.01
42 89 0.33
43 177 0.65
44 4 0.01
ACGTcount: A:0.16, C:0.30, G:0.36, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCATAGGCACCCTGGTGCCTCGGAT
Found at i:12529022 original size:21 final size:21
Alignment explanation
Indices: 12528996--12529038 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
12528986 GGCACCTGGC
12528996 CATGTTCAGTACAGTCCTATT
1 CATGTTCAGTACAGTCCTATT
12529017 CATGTTCAGTACAGTCCTATT
1 CATGTTCAGTACAGTCCTATT
12529038 C
1 C
12529039 TTTCTCTCAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (21 bp):
CATGTTCAGTACAGTCCTATT
Found at i:12539804 original size:37 final size:37
Alignment explanation
Indices: 12539752--12539852 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
12539742 AATAGTCCCC
*
12539752 ACACGTAGTTATCGGGTCTTACCCGGACAAAACCTCT
1 ACACGTAGTCATCGGGTCTTACCCGGACAAAACCTCT
* * *
12539789 ATACGTAGTCATCGGGTCTTACCCGGACATAATCTCT
1 ACACGTAGTCATCGGGTCTTACCCGGACAAAACCTCT
12539826 ACACGTAGTCATCGGGTCTTACCCGGA
1 ACACGTAGTCATCGGGTCTTACCCGGA
12539853 ATATATTTCC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.26
Consensus pattern (37 bp):
ACACGTAGTCATCGGGTCTTACCCGGACAAAACCTCT
Found at i:12540051 original size:48 final size:48
Alignment explanation
Indices: 12539993--12540432 Score: 718
Period size: 48 Copynumber: 9.0 Consensus size: 48
12539983 ATATACACAC
*
12539993 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
*
12540041 ATCTCATACATATTTCACACTAGCCATTCGACTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
12540089 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
12540137 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
12540187 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
12540235 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
12540285 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* *
12540333 ATCTCATATATATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTC--ATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
* * * *
12540383 ATCTCATACATATTTCACACTAACCATTCAGCTTTACCACACATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
12540431 AT
1 AT
12540433 ATTTATCTTG
Statistics
Matches: 367, Mismatches: 19, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
48 229 0.62
50 138 0.38
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACAT
Found at i:12540180 original size:98 final size:98
Alignment explanation
Indices: 12539993--12540432 Score: 794
Period size: 98 Copynumber: 4.5 Consensus size: 98
12539983 ATATACACAC
* *
12539993 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
* *
12540056 CACACTAGCCATTCGACTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
12540089 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
12540154 CACATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
12540187 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
12540252 CACATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
12540285 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
12540350 CACATTAGCCATTCGGCTTTACCACATATACAT
66 CACATTAGCCATTCGGCTTTACCACATATACAT
* * * *
12540383 ATCTCATACATATTTCACACTAACCATTCAGCTTTACCACACATATATAT
1 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
12540433 ATTTATCTTG
Statistics
Matches: 334, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
96 52 0.16
98 282 0.84
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (98 bp):
ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTT
CACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:12544744 original size:58 final size:59
Alignment explanation
Indices: 12544653--12544773 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
12544643 CCCTCTCCAA
* *
12544653 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATAAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCG
* * *
12544712 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCG
12544770 TCCC
1 TCCC
12544774 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATAAACCG
Found at i:12545574 original size:43 final size:43
Alignment explanation
Indices: 12545527--12546260 Score: 844
Period size: 43 Copynumber: 17.2 Consensus size: 43
12545517 TGGATATGCA
*
12545527 GGAGCCTCGGACACCATCGGCAACCTAGGCCATTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12545570 GGAGCCTCGGGCACCATCGACAACCTAGGCCCTTGGTCATGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12545613 GGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12545656 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGCTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
12545699 AGAGCCTCGG-CACCATCGACAACCTATGCCCTTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12545741 GAAGCCTCGGGCACCATTGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12545783 GGAGCCTCGGACACCATCGGTACCCTAGGTCCC-TGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCG
* * *
12545826 GGAGCCTCGGACACCATCGGTACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * *
12545869 GGAGCCTCGAACACCATCGGTAACCTAAGCCCCTGGTTGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12545912 GGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
12545953 GGAGACTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
12545995 AGAGCCTCGGACACCATCGGTAACCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * ** *
12546038 AGAGCCTCGGGCCCCATCGGC-ACCTTGGTGCTTAGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-GGTCGTGCG
* * * * *
12546080 AGAGCCTCGGACAACATTGGCAACCTAGGCCCCTGGTCGTGTG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* **
12546123 GGAGCCTC-GAGCACCATCGGC-ACCTTGGTACTTGGAT-GTGCG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* * *
12546165 GGAGCCTCGGACACCATTGGAAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12546208 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
12546251 GGAGCCTCGG
1 GGAGCCTCGG
12546261 GTATCATCGA
Statistics
Matches: 589, Mismatches: 86, Indels: 32
0.83 0.12 0.05
Matches are distributed among these distances:
41 27 0.05
42 190 0.32
43 369 0.63
44 3 0.01
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:12545798 original size:85 final size:85
Alignment explanation
Indices: 12545527--12546261 Score: 815
Period size: 85 Copynumber: 8.6 Consensus size: 85
12545517 TGGATATGCA
* *
12545527 GGAGCCTCGGACACCATCGGCAACCTAGGCCATTGGTCGTGCGGGAGCCTCGGGCACCATCGACA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
*
12545592 ACCTAGGCCCTTGGTCATGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * *
12545613 GGAGCCTCGGGCACCATCAGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGTA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGG-C
*
12545678 ACCTAGGCCCTTGCTCGTGCG
65 ACCTAGGCCCTTGGTCGTGCG
* * * * * *
12545699 AGAGCCTCGG-CACCATCGACAACCTATGCCCTTGGTCGTACGGAAGCCTCGGGCACCATTGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
12545763 CCTAGGCCCTTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* * * *
12545783 GGAGCCTCGGACACCATCGGTACCCTAGGTCCC-TGGTCGTGCGGGAGCCTCGGACACCATCGGT
1 GGAGCCTCGGACACCATCGGCAACCTAGG-CCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
*
12545847 ACCCTAGGCCCCTGGTCGTGCG
65 A-CCTAGGCCCTTGGTCGTGCG
* * * * *
12545869 GGAGCCTCGAACACCATCGGTAACCTAAGCCCCTGGTTGTGCGGGAGCCTCGGG-ACCATCGGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
12545933 CCTAGGCCCTTGGTCGTGCG
66 CCTAGGCCCTTGGTCGTGCG
* * * ** * *
12545953 GGAGACTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGCGAGAGCCTCGGACACCATCGGT
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG-
* *
12546016 AACCTAGGCCCCTGGTCGTGCG
64 CACCTAGGCCCTTGGTCGTGCG
* * * * ** * * * * *
12546038 AGAGCCTCGGGCCCCATCGGC-ACCTTGGTGCTTAGAT-GTGCGAGAGCCTCGGACAACATTGGC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTT-GGTCGTGCGGGAGCCTCGGGCACCATCGGC
* *
12546101 AACCTAGGCCCCTGGTCGTGTG
65 -ACCTAGGCCCTTGGTCGTGCG
* ** * *
12546123 GGAGCCTC-GAGCACCATCGGC-ACCTTGGTACTTGGAT-GTGCGGGAGCCTCGGACACCATTGG
1 GGAGCCTCGGA-CACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGG
* *
12546185 AAACCTAGGCCCTTGGTCGTGCC
64 -CACCTAGGCCCTTGGTCGTGCG
* *
12546208 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGG
12546262 TATCATCGAT
Statistics
Matches: 561, Mismatches: 72, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
83 23 0.04
84 76 0.14
85 280 0.50
86 182 0.32
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.18
Consensus pattern (85 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
CCTAGGCCCTTGGTCGTGCG
Found at i:12546293 original size:43 final size:43
Alignment explanation
Indices: 12546246--12546338 Score: 114
Period size: 43 Copynumber: 2.2 Consensus size: 43
12546236 GCCCTTGGTC
* * * * * *
12546246 GTGCGGGAGCCTCGGGTATCATCGATACCTTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCAGCGACACCCTGGTGCCTCGGAT
* *
12546289 GTGCGGGAGCCTCGAGCAGCAGGGGCACCCTGGTGCCTCGGAT
1 GTGCGGGAGCCTCGAGCAGCAGCGACACCCTGGTGCCTCGGAT
12546332 GTGCGGG
1 GTGCGGG
12546339 CTAAAGAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.13, C:0.27, G:0.41, T:0.19
Consensus pattern (43 bp):
GTGCGGGAGCCTCGAGCAGCAGCGACACCCTGGTGCCTCGGAT
Found at i:12551688 original size:14 final size:15
Alignment explanation
Indices: 12551669--12551697 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12551659 TTGTAGTGTC
12551669 GCCTGGTA-GCAGCG
1 GCCTGGTACGCAGCG
12551683 GCCTGGTACGCAGCG
1 GCCTGGTACGCAGCG
12551698 TGTTTGTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.14, C:0.31, G:0.41, T:0.14
Consensus pattern (15 bp):
GCCTGGTACGCAGCG
Found at i:12557083 original size:43 final size:43
Alignment explanation
Indices: 12557030--12557341 Score: 395
Period size: 43 Copynumber: 7.3 Consensus size: 43
12557020 ACGTCAGTGG
* * *
12557030 TGCGAGAGCCTCGAGCACCATCGGC-ACCTTGGTGCCTTGGAT-A
1 TGCGGGAGCCTCGAGCACCATCGGCAACCTAGG-CCCTTGG-TCA
*
12557073 TGCAGGAGCCTCG-GACACCATCGGCAACCTAGGCCCTTGGTCA
1 TGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCA
* *
12557116 TACGGGAGCCTCG-GCCACCATCGGCAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGAG-CACCATCGGCAACCTAGGCCCTTGGTCA
* * *
12557159 TGCGGGAGCTTCGGGCACCATCGGCAACCTAGGCCCTTGGTCG
1 TGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCA
*
12557202 TGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGT-A
1 TGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCA
*
12557244 GTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGT-A
1 -TGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCA
* *
12557287 GTGCGGGAGCCTCGAGAACCATCGGC-ACCTAGGCCCTTGGTCG
1 -TGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCA
*
12557330 TGCGAGAGCCTC
1 TGCGGGAGCCTC
12557342 AGACACTGCC
Statistics
Matches: 245, Mismatches: 18, Indels: 13
0.89 0.07 0.05
Matches are distributed among these distances:
42 28 0.11
43 210 0.86
44 7 0.03
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (43 bp):
TGCGGGAGCCTCGAGCACCATCGGCAACCTAGGCCCTTGGTCA
Found at i:12557240 original size:129 final size:128
Alignment explanation
Indices: 12557029--12557347 Score: 453
Period size: 129 Copynumber: 2.5 Consensus size: 128
12557019 GACGTCAGTG
* * * * *
12557029 GTGCGAGAGCCTCGAGCACCATCGGCACCTTGGTGCCTTGGAT-ATGCAGGAGCCTCGGACACCA
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGACACCA
**
12557093 TCGGCAACCTAGGCCCTTGGTCA-TACGGGAGCCTCGGCCACCATCGGCAACCTAGGCCCTTGGT
64 TCGGCAACCTAGGCCCTTGGT-AGTACGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGT
*
12557157 C
128 A
* * *
12557158 GTGCGGGAGCTTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCAT
1 GTGCGGGAGCCTCGAGCACCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCAT
*
12557223 CGGCAACCTAGGCCCTTGGTAGTGCGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTA
65 CGGCAACCTAGGCCCTTGGTAGTACGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTA
* * *
12557287 GTGCGGGAGCCTCGAGAACCATCGGCACCTAGGCCCTTGGTCGTGCGAGAGCCTCAGACAC
1 GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACAC
12557348 TGCCAGGGGT
Statistics
Matches: 169, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
128 34 0.20
129 129 0.76
130 6 0.04
ACGTcount: A:0.18, C:0.33, G:0.32, T:0.17
Consensus pattern (128 bp):
GTGCGGGAGCCTCGAGCACCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGACACCATC
GGCAACCTAGGCCCTTGGTAGTACGGGAGCCTCGAACACCATCGGCAACCTAGGCCCTTGGTA
Found at i:12559022 original size:58 final size:59
Alignment explanation
Indices: 12558931--12559051 Score: 199
Period size: 58 Copynumber: 2.1 Consensus size: 59
12558921 CCCTCCCCAA
* *
12558931 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* *
12558990 TCCC-AAAGCTAGAATTCAGATACCGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
12559048 TCCC
1 TCCC
12559052 TGTCCCTCCC
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
58 54 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.25, G:0.18, T:0.24
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:12559336 original size:13 final size:13
Alignment explanation
Indices: 12559318--12559345 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
12559308 ACACATGAAT
12559318 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
12559331 GTCGCCTGGTAGC
1 GTCGCCTGGTAGC
12559344 GT
1 GT
12559346 GATTTTTCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.29, G:0.39, T:0.25
Consensus pattern (13 bp):
GTCGCCTGGTAGC
Found at i:12564135 original size:85 final size:85
Alignment explanation
Indices: 12563934--12564582 Score: 702
Period size: 85 Copynumber: 7.7 Consensus size: 85
12563924 GGATATGCAG
* *
12563934 GAGCCTCGGACACCATCGGCAACCTAGACCCTTGGTCGTGC-AGAGCCTCGGCACCATCGGCAAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAAC
*
12563998 CTA-G-CCTTGGTCATGC-A
66 CTAGGCCCTTGGTCGTGCGA
* * *
12564015 GGAG-C-CGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGCACCATCGGCAA
1 -GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAA
*
12564078 CCTATGCCCTTGGTCGTGCGA
65 CCTAGGCCCTTGGTCGTGCGA
12564099 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGC-AC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAAC
*
12564163 CTAGGCCCTTGGTCGTGCGG
66 CTAGGCCCTTGGTCGTGCGA
* * * *
12564183 GAGCCTCAGACACCATCGGCACCCTAGGCCC-TGGTC-TGCGGGAGCCTTGGACACCATCGGCAC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGG-CACCATCGGCAA
* *
12564246 CCTAGGCCCCTGGTCGTGCGG
65 CCTAGGCCCTTGGTCGTGCGA
** * * * * * *
12564267 GAGCCTCAAACACCATTGGTAACCTAAGCCCCTGATCGTGCGGGAGCCTCGGGACCATCGGC-AC
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAAC
12564331 CTAGGCCCTTGGTCGTGC-A
66 CTAGGCCCTTGGTCGTGCGA
* * * ** *
12564350 GGAGCCTCGGCCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGGACACCATCGGT
1 -GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGC
* *
12564413 AACCTAGGCCCTTGGTCATGCGG
63 AACCTAGGCCCTTGGTCGTGCGA
* * * * ** * *
12564436 GAGCTTCAGG-CACCACCAGC-ACCTTGGTGCTTGGAT-GTACGGAAGCCTCGGACACCATCGGC
1 GAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGG-CACCATCGGC
12564498 AACCTAGGCCCTTGGTCGTGCCG-
63 AACCTAGGCCCTTGGTCGTG-CGA
* * * * *
12564521 GAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTACGAGAGCCTCGGGCACCATCGG
1 GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTC-GGCACCATCGG
12564583 TACCTTGGTG
Statistics
Matches: 487, Mismatches: 59, Indels: 38
0.83 0.10 0.07
Matches are distributed among these distances:
80 32 0.07
81 27 0.06
82 17 0.03
83 52 0.11
84 140 0.29
85 169 0.35
86 48 0.10
87 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.18
Consensus pattern (85 bp):
GAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGCACCATCGGCAAC
CTAGGCCCTTGGTCGTGCGA
Found at i:12564526 original size:43 final size:43
Alignment explanation
Indices: 12563933--12564582 Score: 742
Period size: 43 Copynumber: 15.5 Consensus size: 43
12563923 TGGATATGCA
*
12563933 GGAGCCTCGGACACCATCGGCAACCTAGACCCTTGGTCGTGC-
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12563975 AGAGCCTCGG-CACCATCGGCAACCTA-G-CCTTGGTCATGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12564015 GGAG-C-CGGGCACCATTGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12564056 AGAGCCTCGG-CACCATCGGCAACCTATGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
*
12564098 AGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
12564141 GGAGCCTCGG-CACCATCGGC-ACCTAGGCCCTTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12564182 GGAGCCTCAGACACCATCGGCACCCTAGGCCC-TGGTC-TGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * *
12564223 GGAGCCTTGGACACCATCGGCACCCTAGGCCCCTGGTCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
** * * * * *
12564266 GGAGCCTCAAACACCATTGGTAACCTAAGCCCCTGATCGTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12564309 GGAGCCTCGG-GACCATCGGC-ACCTAGGCCCTTGGTCGTGCA
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * **
12564350 GGAGCCTCGGCCACCATCGAC-ACCTTGGTGCTTGGAT-GTGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
12564392 GGAGCCTCGGACACCATCGGTAACCTAGGCCCTTGGTCATGCG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * * ** *
12564435 GGAGCTTCAGG-CACCACCAGC-ACCTTGGTGCTTGGAT-GTACG
1 GGAGCCTC-GGACACCATCGGCAACCTAGGCCCTTGG-TCGTGCG
* *
12564477 GAAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* * * *
12564520 GGAGCCTCGGGCACTATCGGTAACCTAGGCCCTTGGTCGTACG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
* *
12564563 AGAGCCTCGGGCACCATCGG
1 GGAGCCTCGGACACCATCGG
12564583 TACCTTGGTG
Statistics
Matches: 516, Mismatches: 72, Indels: 39
0.82 0.11 0.06
Matches are distributed among these distances:
38 3 0.01
39 27 0.05
40 4 0.01
41 123 0.24
42 158 0.31
43 199 0.39
44 2 0.00
ACGTcount: A:0.18, C:0.34, G:0.31, T:0.18
Consensus pattern (43 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCG
Found at i:12572279 original size:58 final size:59
Alignment explanation
Indices: 12572188--12572308 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
12572178 CCCTCCCCAA
** *
12572188 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTTTGGTACCCAATAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
* *
12572247 TCCC-AAAGGTAGGATTCGGATACCGTTGCATGTCCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
12572305 TCCC
1 TCCC
12572309 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGGTAGAATTCGGATACCGTTACATGTCCGGTACCCAACAATGAATGAATCG
Found at i:12572732 original size:24 final size:24
Alignment explanation
Indices: 12572704--12572757 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
12572694 CCGGTTAGGT
* *
12572704 TCCCGGCGGTGCTCCGGTGAGCCA
1 TCCCGGCAGTGCTCCGGCGAGCCA
12572728 TCCCGGCAGTGCTCCGGCGAGCCA
1 TCCCGGCAGTGCTCCGGCGAGCCA
12572752 TCCCGG
1 TCCCGG
12572758 AATATCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.09, C:0.41, G:0.35, T:0.15
Consensus pattern (24 bp):
TCCCGGCAGTGCTCCGGCGAGCCA
Found at i:12573067 original size:85 final size:85
Alignment explanation
Indices: 12572919--12573535 Score: 541
Period size: 85 Copynumber: 7.2 Consensus size: 85
12572909 CACATTGCTG
* * * * * * * ** *
12572919 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGTAACCTAGGACGTTTGTCGTGCGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * **
12572984 GCACCACCGGCACCTTGGTA
66 GCACCATCGGCACCTAGGCC
* * * *
12573004 CTTGGAT-GTGCAGGAGCCTCGGGCACCACCGGCAACCGAGGCCCCTGGTCGCGCGGGAGCCTC-
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
**
12573067 GATACCATCGGCAACCTAGGCC
65 GGCACCATCGGC-ACCTAGGCC
* * *
12573089 CTTGGTCGTGCGAGAGCCTCGGGCACCATC-GAAACCTAGGCCCCTGGTCGTACGGGAGCCTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* * *
12573153 CCACCATCGGTAACCTAGGCG
66 GCACCATCGG-CACCTAGGCC
* * * * *** *
12573174 CTTGGTCGTGTGGGAGCCTCGGCCACCATCAGC-ACCTAGGCCCCTGGTCATATAGGAGCTTCGG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
* *
12573238 CCACCATCGGCAACCTAAGCC
66 GCACCATCGGC-ACCTAGGCC
* * *
12573259 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-TACCTAGGCCCTTTGGTCGTGCGGGAGCCTCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-CTGGTCGTGCGGGAGCCTCG
* **
12573323 GGCACCATCGGCACCTTGGTG
65 GGCACCATCGGCACCTAGGCC
** * * * *
12573344 CTTGGAT-GTGCGGGAGCCTCGAACACCATCAGCAACCTCGGCCCTTGGTCGTTCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCG
* *
12573408 GGCACCATCGGTAACCTCGGCC
65 GGCACCATCGG-CACCTAGGCC
* * * *
12573430 CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTACCTTGGAT-GTGCGGGAGCCTC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CCCCTGG-TCGTGCGGGAGCCTC
* * * * **
12573493 GAGCAGCATTGGCACCTTGGTG
64 GGGCACCATCGGCACCTAGGCC
12573515 CTTGGAT-GTGCGGGAGCCTCG
1 CTTGG-TCGTGCGGGAGCCTCG
12573536 AGAAGCATTG
Statistics
Matches: 435, Mismatches: 81, Indels: 32
0.79 0.15 0.06
Matches are distributed among these distances:
84 38 0.09
85 299 0.69
86 97 0.22
87 1 0.00
ACGTcount: A:0.16, C:0.33, G:0.33, T:0.19
Consensus pattern (85 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGG
GCACCATCGGCACCTAGGCC
Found at i:12573182 original size:43 final size:43
Alignment explanation
Indices: 12572919--12573597 Score: 576
Period size: 43 Copynumber: 16.0 Consensus size: 43
12572909 CACATTGCTG
* * * * * * *
12572919 CTTGGACGTGCTGGAGCCTTGGACGCCATCGGTAACCTAGGAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * **
12572962 GTTTGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTA
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
12573004 CTTGGAT-GTGCAGGAGCCTCGGGCACCACCGGCAACCGAGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * **
12573047 CCTGGTCGCGCGGGAGCCTC-GATACCATCGGCAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
12573089 CTTGGTCGTGCGAGAGCCTCGGGCACCATC-GAAACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * *
12573131 CCTGGTCGTACGGGAGCCTCGGCCACCATCGGTAACCTAGGCG
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
12573174 CTTGGTCGTGTGGGAGCCTCGGCCACCATCAGC-ACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *** * * *
12573216 CCTGGTCATATAGGAGCTTCGGCCACCATCGGCAACCTAAGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* *
12573259 CTTGGTCGTGCGAGAGCCTCGGGCACCATCGG-TACCTAGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* **
12573301 CTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTTGGTG
1 C-TTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
** * *
12573344 CTTGGAT-GTGCGGGAGCCTCGAACACCATCAGCAACCTCGGCC
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
12573387 CTTGGTCGTTCGGGAGCCTCGGGCACCATCGGTAACCTCGGCC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * *
12573430 CTTGGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTAC
1 CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG-CC
* * * * **
12573473 CTTGGAT-GTGCGGGAGCCTCGAGCAGCATTGGC-ACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
* * * * * **
12573515 CTTGGAT-GTGCGGGAGCCTCGAGAAGCATTGGC-ACCTTGGTG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
** *
12573557 CTTGGAT-GTGCGGGAGCCTCGAACACCATCGGTAACCTAGG
1 CTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGG
12573598 ACGTTGGATG
Statistics
Matches: 528, Mismatches: 94, Indels: 28
0.81 0.14 0.04
Matches are distributed among these distances:
42 254 0.48
43 273 0.52
44 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (43 bp):
CTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCC
Found at i:12573467 original size:128 final size:127
Alignment explanation
Indices: 12573016--12573494 Score: 536
Period size: 128 Copynumber: 3.7 Consensus size: 127
12573006 TGGATGTGCA
* * * * * **
12573016 GGAGCCTCGGGCACCACCGGCAACCGAGGCCCCTGGTCGCGCGGGAGCCTC-GATACCATCGGCA
1 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-
* ** * *
12573080 ACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACCATCGAAACCTAGGCCCCTGGTCGTACG
65 ACCTAGGCCCTTGGAT-GTGCGGGAGCCTCGAACACCATCGCAACCTAGGCCCTTGGTCGTACG
* * * * *
12573143 GGAGCCTCGGCCACCATCGGTAACCTAGGCGCTTGGTCGTGTGGGAGCCTCGGCCACCATCAGCA
1 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* * * * ** * *
12573208 CCTAGGCCCCTGGTCATAT--AGGAGCTTCGGCCACCATCGGCAACCTAAGCCCTTGGTCGTGCG
66 CCTAGGCCCTTGG--ATGTGCGGGAGCCTCGAACACCATC-GCAACCTAGGCCCTTGGTCGTACG
*
12573271 AGAGCCTCGGGCACCATCGGT-ACCTAGGCCCTTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
1 GGAGCCTCGGGCACCATCGGTAACCTAGGCCC-TTGGTCGTGCGGGAGCCTCGGGCACCATCGGC
* ** * *
12573335 ACCTTGGTGCTTGGATGTGCGGGAGCCTCGAACACCATCAGCAACCTCGGCCCTTGGTCGTTCG
65 ACCTAGGCCCTTGGATGTGCGGGAGCCTCGAACACCATC-GCAACCTAGGCCCTTGGTCGTACG
* *
12573399 GGAGCCTCGGGCACCATCGGTAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCACCGGCA
1 GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
* *
12573464 CCTTGGTACCTTGGATGTGCGGGAGCCTCGA
66 CCTAGG-CCCTTGGATGTGCGGGAGCCTCGA
12573495 GCAGCATTGG
Statistics
Matches: 297, Mismatches: 45, Indels: 18
0.82 0.12 0.05
Matches are distributed among these distances:
126 3 0.01
127 80 0.27
128 181 0.61
129 32 0.11
130 1 0.00
ACGTcount: A:0.16, C:0.34, G:0.32, T:0.18
Consensus pattern (127 bp):
GGAGCCTCGGGCACCATCGGTAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCA
CCTAGGCCCTTGGATGTGCGGGAGCCTCGAACACCATCGCAACCTAGGCCCTTGGTCGTACG
Found at i:12573605 original size:85 final size:85
Alignment explanation
Indices: 12572969--12573622 Score: 326
Period size: 85 Copynumber: 7.7 Consensus size: 85
12572959 GACGTTTGTC
* * * ** * * * *
12572969 GTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTACTTGGATGTGCAGGAGCCTCGGGCACCACC
1 GTGCGGGAGCCTCGAGCACCATCGGAACCTTGGCGCTTGGATGTGCGGGAGCCTCGAGAACCATC
** * *
12573034 GGCAACCGAGG-CCCCTGG-T
66 GGC-ACCTTGGTACCTTGGAT
* * * * * * *
12573053 CGCGCGGGAGCCTCGA-TACCATCGGCAACCTAGGCCCTTGG-TCGTGCGAGAGCCTCGGGCACC
1 -GTGCGGGAGCCTCGAGCACCATCGG-AACCTTGGCGCTTGGAT-GTGCGGGAGCCTCGAGAACC
** * * *
12573116 ATCGAAACCTAGG-CCCCTGG-T
63 ATCGGCACCTTGGTACCTTGGAT
* * * *
12573137 CGTACGGGAGCCTCG-GCCACCATCGGTAACCTAGGCGCTTGG-TCGTGTGGGAGCCTCG-GCCA
1 -GTGCGGGAGCCTCGAG-CACCATCGG-AACCTTGGCGCTTGGAT-GTGCGGGAGCCTCGAG-AA
* * * *
12573199 CCATCAGCACCTAGG-CCCCTGGTCAT
61 CCATCGGCACCTTGGTACCTTGG--AT
* * * ** * * * *
12573225 AT--AGGAGCTTCG-GCCACCATCGGCAACCTAAGCCCTTGG-TCGTGCGAGAGCCTCGGGCACC
1 GTGCGGGAGCCTCGAG-CACCATCGG-AACCTTGGCGCTTGGAT-GTGCGGGAGCCTCGAGAACC
* * *
12573286 ATCGGTACCTAGG-CCCTTTGG-T
63 ATCGGCACCTTGGTACC-TTGGAT
* * *
12573308 CGTGCGGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGA-ACACCA
1 -GTGCGGGAGCCTCGAGCACCATCGGAACCTTGGCGCTTGGATGTGCGGGAGCCTCGAGA-ACCA
* * *
12573372 TCAGCAACCTCGG-CCCTTGG-T
64 TCGGC-ACCTTGGTACCTTGGAT
* * * * * *
12573393 CGTTCGGGAGCCTCGGGCACCATCGGTAACCTCGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACC
1 -GTGCGGGAGCCTCGAGCACCATCGG-AACCTTGGCGCTTGGAT-GTGCGGGAGCCTCGAGAACC
*
12573457 ACCGGCACCTTGGTACCTTGGAT
63 ATCGGCACCTTGGTACCTTGGAT
* * * * * *
12573480 GTGCGGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGAAGCATT
1 GTGCGGGAGCCTCGAGCACCATCGGAACCTTGGCGCTTGGATGTGCGGGAGCCTCGAGAACCATC
*
12573545 GGCACCTTGGT-GCTTGGAT
66 GGCACCTTGGTACCTTGGAT
* * * *
12573564 GTGCGGGAGCCTCGAACACCATCGGTAACCTAGGACG-TTGGATGTGCAGGTGCCTCGAG
1 GTGCGGGAGCCTCGAGCACCATCGG-AACCTTGG-CGCTTGGATGTGCGGGAGCCTCGAG
12573623 CAGCAGGGGC
Statistics
Matches: 462, Mismatches: 82, Indels: 50
0.78 0.14 0.08
Matches are distributed among these distances:
83 1 0.00
84 66 0.14
85 299 0.65
86 92 0.20
87 3 0.01
88 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (85 bp):
GTGCGGGAGCCTCGAGCACCATCGGAACCTTGGCGCTTGGATGTGCGGGAGCCTCGAGAACCATC
GGCACCTTGGTACCTTGGAT
Found at i:12575861 original size:42 final size:42
Alignment explanation
Indices: 12575782--12576709 Score: 881
Period size: 42 Copynumber: 21.9 Consensus size: 42
12575772 GCCTTGGATG
* * *
12575782 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** *
12575825 CCACCGGCACCTTGGTGCTTGGAT-GTACGGGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * **
12575867 CCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTC-GATA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
12575909 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
12575952 CCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
** *
12575994 CCATCGGCAACCTAGGTGCTTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** * *
12576037 CCATCGGCACCTAGGCCCCTAGTCATGTTGGAGCTTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* *
12576079 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTTGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
12576122 CCATCGGCACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * *
12576164 TCATCGGCACCTTGGTGCTTGGAT-GTGCAGGAGCCTTGGGCA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
12576206 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
*
12576249 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
12576291 CCATTGGCACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
12576333 CCATCGGCACCTAGGCCCTTTGAT-GTCCAGGAGCCTCCGGCA
1 CCATCGGCACCTAGGCCC-TTGGTCGTGCGGGAGCCTCGGGCA
* * *
12576375 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
12576417 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** **
12576459 CGATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
*
12576501 CCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * **
12576544 CCATCGGCACCTTGGTGCCTTGGAT-GTGCGGAAGCCTCAAGCA
1 CCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * ** * *
12576587 GCATTGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAGAA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * * ** * *
12576629 GCATTGGCACCTTGGTGCTTGGAT-GTGCAGGAGCCTCGGACA
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
12576671 CCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 CCATCGGC-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
12576710 AGCAGCAGGG
Statistics
Matches: 746, Mismatches: 119, Indels: 40
0.82 0.13 0.04
Matches are distributed among these distances:
41 40 0.05
42 424 0.57
43 281 0.38
44 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:12575898 original size:85 final size:85
Alignment explanation
Indices: 12575782--12576709 Score: 916
Period size: 85 Copynumber: 11.0 Consensus size: 85
12575772 GCCTTGGATG
* * * * * **
12575782 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCACCGGC-ACCTTGGTGCTTG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
12575846 GAT-GTACGGGAGCCTCGGGCA
65 G-TCGTGCGGGAGCCTCGGGCA
* * **
12575867 CCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTC-GATACCATCGGCAACCTAGGCCCTTG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
12575931 GTCGTGCGAGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * **
12575952 CCATCGGAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGTGCTTGG
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
*
12576017 TCGTGCGGGAGCCTCGGCCA
66 TCGTGCGGGAGCCTCGGGCA
* * * ** * *
12576037 CCATCGGCACCTAGGCCCCTAGTCATGTTGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGG
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
* *
12576102 TCGTGCGAGAGCCTTGGGCA
66 TCGTGCGGGAGCCTCGGGCA
* * * **
12576122 CCATCGGCACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCATCATCGGC-ACCTTGGTGCTTGG
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
* *
12576186 AT-GTGCAGGAGCCTTGGGCA
66 -TCGTGCGGGAGCCTCGGGCA
*
12576206 CCATCGGCAACCTAGGCCCCTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
12576271 GTCGTGCGAGAGCCTCGGG-A
65 GTCGTGCGGGAGCCTCGGGCA
* * *
12576291 CCATTGGCACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGC-ACCTAGGCCCTTTG
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCC-TTG
* * * *
12576355 AT-GTCCAGGAGCCTCCGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * *
12576375 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACCATCGGCAACCTAGG-CCTTG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
* * *
12576438 ATCGTGCGAGAACCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * ** ** *
12576459 CGATCGGCACCTTGGTGCTTGGAT-GTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTG
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
12576523 GTCGTGCGGGAGCCTCGGGCA
65 GTCGTGCGGGAGCCTCGGGCA
* * * ** * * * **
12576544 CCATCGGCACCTTGGTGCCTTGGAT-GTGCGGAAGCCTCAAGCAGCATTGGC-ACCTTGGTGCTT
1 CCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTT
* *
12576607 GGAT-GTGCGGGAGCCTCGAGAA
64 GG-TCGTGCGGGAGCCTCGGGCA
* * * ** * * * *
12576629 GCATTGGCACCTTGGTGCTTGGAT-GTGCAGGAGCCTCGGACACCATCGGCAACCTAGGACGTTG
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTG
*
12576693 GAT-GTGCGGGTGCCTCG
65 G-TCGTGCGGGAGCCTCG
12576710 AGCAGCAGGG
Statistics
Matches: 711, Mismatches: 114, Indels: 36
0.83 0.13 0.04
Matches are distributed among these distances:
83 33 0.05
84 235 0.33
85 390 0.55
86 53 0.07
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (85 bp):
CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG
TCGTGCGGGAGCCTCGGGCA
Found at i:12575936 original size:127 final size:127
Alignment explanation
Indices: 12575782--12576709 Score: 928
Period size: 127 Copynumber: 7.3 Consensus size: 127
12575772 GCCTTGGATG
* * * * * **
12575782 CCATCGGCAACCTAGGACGTTTGTCGTGCGGGAGCCTCGGGCACCACCGGCACCTTGGTGCTTGG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* * * **
12575847 ATGTACGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCCTGGTCGCGCGGGAGCCTC-GATA
65 ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * *
12575909 CCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGGCACCATCGGAACCTAGGCCCCTGG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
* ** *
12575974 -TCGTGCGGGAGCCTCGGCCACCATCGGCAACCTAGGTGCTTGGTCGTGCGGGAGCCTCGGCCA
65 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** * *
12576037 CCATCGGCACCTAGGCCCCTAGTCATGTTGGAGCTTCGGCCACCATCGGCAACCTAGGCCCTTGG
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTGG
* * *
12576102 -TCGTGCGAGAGCCTTGGGCACCATCGGC-ACCTAGGCCCTTGGTCGTGTGGGAGCCTCGGGCA
65 AT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * ** * * *
12576164 TCATCGGCACCTTGGTGCTTGGAT-GTGCAGGAGCCTTGGGCACCATCGGCAACCTAGGCCCCTG
1 CCATCGGCACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGC-ACCTAGGCCCTTG
*
12576228 G-TCGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTCGGG-A
64 GAT-GTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * *
12576291 CCATTGGCACTTAGGCCCTTGGTCGTGCGGGAGCCTCGGCCACCATCGGCACCTAGGCCCTTTGA
1 CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGA
* * * * * *
12576356 TGTCCAGGAGCCTCCGGCACCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCA
66 TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * * * **
12576417 CCATCGGCAACCTAGG-CCTTGATCGTGCGAGAACCTCGGGCACGATCGGCACCTTGGTGCTTGG
1 CCATCGGC-ACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGG
** *
12576481 ATGTGCGGGAGCCTCGAACACCATCGGCAACCTCGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
65 ATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
* * * ** * * * **
12576544 CCATCGGCACCTTGGTGCCTTGGAT-GTGCGGAAGCCTCAAGCAGCATTGGCACCTTGGTGCTTG
1 CCATCGGCACCTAGG-CCCTTGG-TCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTG
* * * * * ** * *
12576608 GATGTGCGGGAGCCTCGAGAAGCATTGGC-ACCTTGGTGCTTGGAT-GTGCAGGAGCCTCGGACA
64 GATGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGCGGGAGCCTCGGGCA
* * *
12576671 CCATCGGCAACCTAGGACGTTGGAT-GTGCGGGTGCCTCG
1 CCATCGGC-ACCTAGGCCCTTGG-TCGTGCGGGAGCCTCG
12576710 AGCAGCAGGG
Statistics
Matches: 673, Mismatches: 113, Indels: 30
0.82 0.14 0.04
Matches are distributed among these distances:
125 22 0.03
126 128 0.19
127 375 0.56
128 147 0.22
129 1 0.00
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (127 bp):
CCATCGGCACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCACCATCGGCACCTAGGCCCTTGGA
TGTGCGGGAGCCTCGGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGGGAGCCTCGGGCA
Found at i:12576409 original size:23 final size:23
Alignment explanation
Indices: 12576383--12576452 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
12576373 CACCATCGGC
12576383 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
* * ***
12576406 AACCTCGGGCACCATCG-GC---
1 AACCTAGGCCTTGATCGTGCGAG
12576425 AACCTAGGCCTTGATCGTGCGAG
1 AACCTAGGCCTTGATCGTGCGAG
12576448 AACCT
1 AACCT
12576453 CGGGCACGAT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 12 0.36
20 2 0.06
22 2 0.06
23 17 0.52
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (23 bp):
AACCTAGGCCTTGATCGTGCGAG
Found at i:12576463 original size:23 final size:23
Alignment explanation
Indices: 12576395--12576464 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
12576385 CCTAGGCCTT
12576395 GATCGTGCGAGAACCTCGGGCAC
1 GATCGTGCGAGAACCTCGGGCAC
* * * **
12576418 CATCG-GC---AACCTAGGCCTT
1 GATCGTGCGAGAACCTCGGGCAC
12576437 GATCGTGCGAGAACCTCGGGCAC
1 GATCGTGCGAGAACCTCGGGCAC
12576460 GATCG
1 GATCG
12576465 GCACCTTGGT
Statistics
Matches: 33, Mismatches: 10, Indels: 8
0.65 0.20 0.16
Matches are distributed among these distances:
19 12 0.36
20 2 0.06
22 2 0.06
23 17 0.52
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.16
Consensus pattern (23 bp):
GATCGTGCGAGAACCTCGGGCAC
Found at i:12589755 original size:41 final size:41
Alignment explanation
Indices: 12589640--12590292 Score: 587
Period size: 41 Copynumber: 16.7 Consensus size: 41
12589630 TGGATATGCA
12589640 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGC
1 GGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGC
12589682 GGAGCCT-GGC-CCATC-G-AACCTAGGCCCTTGGTCGTGC
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
12589719 GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
* *
12589760 GAGAGCCTGGGCACCATCGGCAA-CTAGGCCCCTGGTCGTGC
1 G-GAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
*
12589801 GGGAGCCTCAGACACCATCGG-AACCTAGGCCC-TGGTCGT-C
1 -GGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
* *
12589841 GGGAG-CTCGGACACCATC-ACAACCTAGGCCCCTGGTCGTGC
1 -GGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGC
* *
12589882 GGAGCCT-GGGACCATCGGCAACCTAGGCCCCTGGTCGTGC
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
12589922 GGAGCCTCGGCACCATC-GC-A-CTAGGCCC-TGGTCG-GC
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
12589958 GGAGCCTCGGGCACCATCGG---CCTAGGCCC-TGGTCGTGC
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
12589996 GAGAGCCTCGGCACC-TCGG--A--T-GG--C-TGGT-GTGC
1 G-GAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
*
12590028 GGGAGCCT-GGACACCATCGG-TACCTA-GCCC-TGGTCGTGC
1 -GGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGC
* **
12590067 GGAGCCTCGGGCACCATCGGC-ACCTTGGTGCTTGGAT-GTGC
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC
12590108 GGGAGCCTCGGACACCATCGG-AACCTAGGCCCTTGGTCGTGC
1 -GGAGCCTCGG-CACCATCGGCAACCTAGGCCCTTGGTCGTGC
12590150 GGAGCCTCGGGCACCATCGG-AA-CTAGG-CCTT-G--GTGC
1 GGAGCCTC-GGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
* ** *
12590186 GGAG-CTCGGCA-CATCGGC-A-CTTGGTGCTCGGAT-GTGC
1 GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGG-TCGTGC
* * * **
12590223 GGAGCCTCGAGCAGCATTGGC-ACCTTGGTGCTTGGAT-GTGC
1 GGAGCCTCG-GCACCATCGGCAACCTAGGCCCTTGG-TCGTGC
* *
12590264 GGGAGCCTCGACACCATAGGCAACCTAGG
1 -GGAGCCTCGGCACCATCGGCAACCTAGG
12590293 ACGTTGGATG
Statistics
Matches: 534, Mismatches: 24, Indels: 106
0.80 0.04 0.16
Matches are distributed among these distances:
31 2 0.00
32 14 0.03
33 21 0.04
34 7 0.01
35 6 0.01
36 21 0.04
37 69 0.13
38 40 0.07
39 69 0.13
40 68 0.13
41 121 0.23
42 96 0.18
ACGTcount: A:0.16, C:0.33, G:0.34, T:0.17
Consensus pattern (41 bp):
GGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGC
Found at i:12590151 original size:268 final size:279
Alignment explanation
Indices: 12589640--12590178 Score: 688
Period size: 268 Copynumber: 2.0 Consensus size: 279
12589630 TGGATATGCA
12589640 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTGGCCCATCGAACCTAG
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTGGCCCATCGAACCTAG
12589705 GCCCTTGGTCGTGCGGAGCCTCGGCACCATCGGCAACCTAGGCCCTTGGTCGTGCGAGAGCCTGG
66 GCCCTTGGTCGTGCGGAGCCTCGGCACCATCGG-AA-CTAGG-CCTTGGTCGTGCGAGAGCCTGG
*
12589770 GCACCATCGGCAACTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGGAACCTAGGCCCTG
128 ACACCATCGGCAACTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGGAACCTAGGCCCTG
12589835 GTCGTCGGGAGCTCGGACACCATCACAACCTAGGCCCCTGGTCGTGCGGAGCCT-GGG-ACCATC
193 GTCGTCGGGAGCTCGGACACCATCACAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGGCACCATC
12589898 GGCAACCTAGGCCCCTGGTCGTGC
258 GG-AA-CTAGGCCCCTGGTCGTGC
*
12589922 GGAGCCTCGG-CACCATC-GC-A-CTAGGCCC-TGGTCG-GCGGAGCCTCGGGCACCATCG-GCC
1 GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCT--GGC-CCATCGAACC
*
12589980 TAGGCCC-TGGTCGTGCGAGAGCCTCGGCACC-TCGG-A-T-GG-C-TGGT-GTGCGGGAGCCTG
63 TAGGCCCTTGGTCGTGCG-GAGCCTCGGCACCATCGGAACTAGGCCTTGGTCGTGCGAGAGCCTG
* * * * * * * *
12590037 GACACCATCGGTACCTA-G-CCCTGGTCGTGC-GGAGCCTCGGGCACCATCGGCACCTTGGTGCT
127 GACACCATCGGCAACTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGGAACCTAGG-CCC
** *
12590099 TGGAT-GTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTCGTGCGGAGCCTCGGGCA
191 TGG-TCGT-CGGGAG-CTCGGACACCATCACAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGGCA
12590163 CCATCGGAACTAGGCC
253 CCATCGGAACTAGGCC
12590179 TTGGTGCGGA
Statistics
Matches: 233, Mismatches: 14, Indels: 34
0.83 0.05 0.12
Matches are distributed among these distances:
265 24 0.10
266 18 0.08
267 8 0.03
268 73 0.31
269 9 0.04
270 9 0.04
272 2 0.01
273 1 0.00
275 1 0.00
276 9 0.04
277 20 0.09
278 33 0.14
279 7 0.03
280 2 0.01
281 7 0.03
282 10 0.04
ACGTcount: A:0.16, C:0.35, G:0.34, T:0.16
Consensus pattern (279 bp):
GGAGCCTCGGACACCATCGGCAACCTAGGCCCTTGGTCGTGCGGAGCCTGGCCCATCGAACCTAG
GCCCTTGGTCGTGCGGAGCCTCGGCACCATCGGAACTAGGCCTTGGTCGTGCGAGAGCCTGGACA
CCATCGGCAACTAGGCCCCTGGTCGTGCGGGAGCCTCAGACACCATCGGAACCTAGGCCCTGGTC
GTCGGGAGCTCGGACACCATCACAACCTAGGCCCCTGGTCGTGCGGAGCCTCGGGCACCATCGGA
ACTAGGCCCCTGGTCGTGC
Found at i:12590201 original size:33 final size:39
Alignment explanation
Indices: 12590024--12590202 Score: 160
Period size: 42 Copynumber: 4.6 Consensus size: 39
12590014 GATGGCTGGT
*
12590024 GTGCGGGAGCCT-GGACACCATCGGTACCTA-GCCC-TGGTC
1 GTGC-GGAGCCTCGG-CACCATCGGAACCTAGGCCCTTGG-C
* * ** *
12590063 GTGCGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
1 GTGCGGAGCCTC-GGCACCATCGGAACCTAGGCCCTTGG-C
12590104 GTGCGGGAGCCTCGGACACCATCGGAACCTAGGCCCTTGGTC
1 GTGC-GGAGCCTCGG-CACCATCGGAACCTAGGCCCTTGG-C
12590146 GTGCGGAGCCTCGGGCACCATCGGAA-CTAGG-CCTT-G-
1 GTGCGGAGCCTC-GGCACCATCGGAACCTAGGCCCTTGGC
12590182 GTGCGGAG-CTCGGCA-CATCGG
1 GTGCGGAGCCTCGGCACCATCGG
12590203 CACTTGGTGC
Statistics
Matches: 121, Mismatches: 12, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
33 6 0.05
34 4 0.03
35 3 0.02
36 8 0.07
38 8 0.07
39 21 0.17
40 9 0.07
41 28 0.23
42 34 0.28
ACGTcount: A:0.15, C:0.31, G:0.36, T:0.18
Consensus pattern (39 bp):
GTGCGGAGCCTCGGCACCATCGGAACCTAGGCCCTTGGC
Found at i:12590270 original size:42 final size:41
Alignment explanation
Indices: 12590063--12590319 Score: 216
Period size: 42 Copynumber: 6.4 Consensus size: 41
12590053 AGCCCTGGTC
*
12590063 GTGCGGAGCCTCGGGCACCATCGGCACCTTGGTGCTTGGAT
1 GTGCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* * **
12590104 GTGCGGGAGCCTCG-GACACCATCGGAACCTAGGCCCTTGG-T
1 GTGC-GGAGCCTCGAG-CACCATCGGCACCTTGGTGCTTGGAT
* * * *
12590145 CGTGCGGAGCCTCGGGCACCATCGG-AACTAGG-CCTT-G--
1 -GTGCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
*
12590182 GTGCGGAG-CTCG-GCA-CATCGGCA-CTTGGTGCTCGGAT
1 GTGCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* *
12590219 GTGCGGAGCCTCGAGCAGCATTGGCACCTTGGTGCTTGGAT
1 GTGCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
* * *
12590260 GTGCGGGAGCCTCGA-CACCATAGGCAACCTAGG-ACGTTGGAT
1 GTGC-GGAGCCTCGAGCACCATCGGC-ACCTTGGTGC-TTGGAT
*
12590302 GTGCGGGTGCCTCGAGCA
1 GTGC-GGAGCCTCGAGCA
12590320 GAGGGGCACC
Statistics
Matches: 184, Mismatches: 15, Indels: 32
0.80 0.06 0.14
Matches are distributed among these distances:
33 10 0.05
34 6 0.03
35 5 0.03
36 8 0.04
37 8 0.04
38 5 0.03
39 7 0.04
40 13 0.07
41 50 0.27
42 70 0.38
43 2 0.01
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.19
Consensus pattern (41 bp):
GTGCGGAGCCTCGAGCACCATCGGCACCTTGGTGCTTGGAT
Found at i:12590344 original size:42 final size:41
Alignment explanation
Indices: 12590207--12590350 Score: 132
Period size: 42 Copynumber: 3.5 Consensus size: 41
12590197 CATCGGCACT
* *
12590207 TGGTGCTCGGATGTGC-GGAGCCTCGAGCAGCATTGGCACCT
1 TGGTGCTCGGATGTGCGGGAGCCTCGAGCAG-ATAGGCACCC
* * *
12590248 TGGTGCTTGGATGTGCGGGAGCCTCGA-CACCATAGGCAACC
1 TGGTGCTCGGATGTGCGGGAGCCTCGAGCA-GATAGGCACCC
* * * **
12590289 TAGG-ACGTTGGATGTGCGGGTGCCTCGAGCAGAGGGGCACCC
1 T-GGTGC-TCGGATGTGCGGGAGCCTCGAGCAGATAGGCACCC
12590331 TGGTGCCTCGGATGTGCGGG
1 TGGTG-CTCGGATGTGCGGG
12590351 CTAAAGAAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
41 28 0.34
42 52 0.63
43 3 0.04
ACGTcount: A:0.15, C:0.25, G:0.40, T:0.20
Consensus pattern (41 bp):
TGGTGCTCGGATGTGCGGGAGCCTCGAGCAGATAGGCACCC
Found at i:12598167 original size:58 final size:59
Alignment explanation
Indices: 12598076--12598196 Score: 190
Period size: 58 Copynumber: 2.1 Consensus size: 59
12598066 CCCTCCCCAA
* *
12598076 TCCCAAAAGGTAGAATTCAGATACCGTTACATGTTCGGTACCCAATAATGAATGAACCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
* * *
12598135 TCCC-AAAGCTAGAATTCAGATACTGTTGCATGTTCGGTACCCAACAATGAATGAATCG
1 TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
12598193 TCCC
1 TCCC
12598197 TGTCCCTCCC
Statistics
Matches: 57, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
58 53 0.93
59 4 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (59 bp):
TCCCAAAAGCTAGAATTCAGATACCGTTACATGTTCGGTACCCAACAATGAATGAACCG
Found at i:12598984 original size:43 final size:43
Alignment explanation
Indices: 12598903--12598985 Score: 98
Period size: 43 Copynumber: 1.9 Consensus size: 43
12598893 ATGTCAGTGG
* * *
12598903 TGCAAGAGCCTCGAGCAGCATCGGCACCTTGGTGCCTTGGATA
1 TGCAAGAGCCTCGAGCACCATCGGCACCTAGGTCCCTTGGATA
*
12598946 TGCAGGAGCCTCG-GACACCATCGGCAACCTAGG-CCCTTGG
1 TGCAAGAGCCTCGAG-CACCATCGGC-ACCTAGGTCCCTTGG
12598986 TCGTGCAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
42 1 0.03
43 27 0.79
44 6 0.18
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.18
Consensus pattern (43 bp):
TGCAAGAGCCTCGAGCACCATCGGCACCTAGGTCCCTTGGATA
Found at i:12600386 original size:25 final size:25
Alignment explanation
Indices: 12600358--12600422 Score: 112
Period size: 25 Copynumber: 2.6 Consensus size: 25
12600348 AAGTCAAAAG
12600358 TCACCGTTTCAATTGTTCCCACCAC
1 TCACCGTTTCAATTGTTCCCACCAC
*
12600383 TCACCGTTTCAATTGTTTCCACCAC
1 TCACCGTTTCAATTGTTCCCACCAC
*
12600408 GCACCGTTTCAATTG
1 TCACCGTTTCAATTG
12600423 ATTTCACTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.20, C:0.35, G:0.11, T:0.34
Consensus pattern (25 bp):
TCACCGTTTCAATTGTTCCCACCAC
Found at i:12600875 original size:10 final size:10
Alignment explanation
Indices: 12600860--12600885 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
12600850 GTTGAGGGTT
12600860 TCGTTTTTAG
1 TCGTTTTTAG
12600870 TCGTTTTTAG
1 TCGTTTTTAG
12600880 TCGTTT
1 TCGTTT
12600886 CTGTATGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.19, T:0.62
Consensus pattern (10 bp):
TCGTTTTTAG
Found at i:12623786 original size:75 final size:77
Alignment explanation
Indices: 12623665--12623827 Score: 215
Period size: 75 Copynumber: 2.2 Consensus size: 77
12623655 TGGCACAACG
* * *
12623665 AGTCCC-TCCCTAATCCCAAACGGTAGAATTTGGATACCGTTACATGTTCAGTACCCAATAATGA
1 AGTCCCTTCCCTAATCCCAAACGGTAGAATTCGGATACCATTACATGTTCAGTACCCAAAAATGA
* *
12623729 ATGAATCGTCCC
66 ATAAATCATCCC
* * *
12623741 AGTCCCTTCCC-AGTCCCAAA-GGTAGAATTCGGATACCATTGCATGTTCGGTACCCAAAAATGA
1 AGTCCCTTCCCTAATCCCAAACGGTAGAATTCGGATACCATTACATGTTCAGTACCCAAAAATGA
12623804 ATAAATCATCCC
66 ATAAATCATCCC
* *
12623816 TGTCCCTCCCCT
1 AGTCCCTTCCCT
12623828 TTTGCAACAA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
75 57 0.76
76 14 0.19
77 4 0.05
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (77 bp):
AGTCCCTTCCCTAATCCCAAACGGTAGAATTCGGATACCATTACATGTTCAGTACCCAAAAATGA
ATAAATCATCCC
Found at i:12638396 original size:85 final size:85
Alignment explanation
Indices: 12638241--12638676 Score: 370
Period size: 85 Copynumber: 5.1 Consensus size: 85
12638231 CACATTCGAG
* * * * *
12638241 GCACCAAGGTGTCGATGGTGCCCGAGACT-CCAGCATGACCAAGGGCCTAGGTTGCTGAAGGTGT
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCA-CACGACCAAGGGCCTAGGTTGCCGATGGTG-
*
12638305 CC-GAGGCTCTCGTACATCCAA
64 CCTGAGGCTCTCGCACATCCAA
** * ** *
12638326 GCACCAAGGTGCC-AGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGTCGATGGTGC
1 GCACCAAGGTGCCGA-TGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGC
*
12638390 CTGAGGCTCCCGCACGA-CCAA
65 CTGAGGCTCTCGCAC-ATCCAA
** * * *
12638411 GGGCCTAGGTTGCCGATGGTGCCCGAGGCT-CTAGCACGTCCAA--GCACTAAGG-TGCCGATGG
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCA-CACGACCAAGGGC-CT-AGGTTGCCGATGG
* * *
12638472 TGCCCGAGGCTCTTGCATGA-CCAA
62 TGCCTGAGGCTCTCGCA-CATCCAA
** * * * * * * * *
12638496 GGGCCTAGGTTACCGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTCTGATTGT-A
1 GCACCAAGG-TGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGC
*
12638560 CTGAGGCTCTCGCAAATCCAA
65 CTGAGGCTCTCGCACATCCAA
* * *
12638581 GCACCAAGGTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGCCGATGGTGTC
1 GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCC
* *
12638646 TGAGGCTCCCGCACATCGAA
66 TGAGGCTCTCGCACATCCAA
12638666 GGCACCAAGGT
1 -GCACCAAGGT
12638677 ACTGATGCTA
Statistics
Matches: 281, Mismatches: 53, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
84 51 0.18
85 177 0.63
86 50 0.18
87 3 0.01
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.19
Consensus pattern (85 bp):
GCACCAAGGTGCCGATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGGTTGCCGATGGTGCC
TGAGGCTCTCGCACATCCAA
Found at i:12638399 original size:43 final size:43
Alignment explanation
Indices: 12638253--12638659 Score: 328
Period size: 43 Copynumber: 9.6 Consensus size: 43
12638243 ACCAAGGTGT
* * *
12638253 CGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * ** *
12638296 TGAAGGTGTCCGAGGCTCTCGTAC-ATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
** * * *
12638338 C-AGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGT
1 CGA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
*
12638381 CGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** *
12638424 CGATGGTGCCCGAGGCTCTAGCACGTCCAA--GCACTAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGC-CT-AGGTTGC
** * *
12638466 CGATGGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * *
12638509 CGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * * * * ** *
12638552 TGATTGT-ACTGAGGCTCTCGCA-AATCCAAGCACCAAGG-TGC
1 CGATGGTGCCCGAGGCTCCCGCACGA-CCAAGGGCCTAGGTTGC
* * *
12638593 CAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
12638636 CGATGGTGTCTGAGGCTCCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
12638660 ATCGAAGGCA
Statistics
Matches: 284, Mismatches: 66, Indels: 28
0.75 0.17 0.07
Matches are distributed among these distances:
41 11 0.04
42 104 0.37
43 166 0.58
44 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (43 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:12638494 original size:128 final size:127
Alignment explanation
Indices: 12638253--12638659 Score: 492
Period size: 128 Copynumber: 3.2 Consensus size: 127
12638243 ACCAAGGTGT
* * * * * *
12638253 CGATGGTGCCCGAGACTCCAGCATGACCAAGGGCCTAGGTTGCTGAAGGTGTCCGAGGCTCTCGT
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
** * * *
12638318 ACATCCAAGCACCAAGGTGCCAGTGGTGCTTGAAGCTCCCGTACGACCAAGGGCCTAGGTTGT
66 ACATCCAAGCACCAAGGTGCCA-TGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* * * *
12638381 CGATGGTGCCTGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCCGATGGTGCCCGAGGCTCTAGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
* * ** * *
12638446 ACGTCCAAGCACTAAGGTGCCGATGGTGCCCGAGGCTCTTGCATGACCAAGGGCCTAGGTTAC
66 ACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
** * * * *
12638509 CGATGGTGCCCGAGGCTCCTACACAACCAAGGGCCTAGGTTTCTGATTGT-ACTGAGGCTCTCGC
1 CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
* * *
12638573 AAATCCAAGCACCAAGGTGCCAATGGTGCCCGAGGCTCCCACACGACCAAGGGCCTAGTTTGC
66 ACATCCAAGCACCAAGGTGCC-ATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
* *
12638636 CGATGGTGTCTGAGGCTCCCGCAC
1 CGATGGTGCCCGAGGCTCCCGCAC
12638660 ATCGAAGGCA
Statistics
Matches: 234, Mismatches: 44, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
127 84 0.36
128 149 0.64
129 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.19
Consensus pattern (127 bp):
CGATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGCTGATGGTGACCGAGGCTCTCGC
ACATCCAAGCACCAAGGTGCCATGGTGCCCGAGGCTCCCGCACGACCAAGGGCCTAGGTTGC
Found at i:12638694 original size:43 final size:43
Alignment explanation
Indices: 12638647--12638782 Score: 150
Period size: 43 Copynumber: 3.2 Consensus size: 43
12638637 GATGGTGTCT
* **
12638647 GAGGCTCCCGCACATCGAAGGCACCAAGGTACTGATGCTATTC
1 GAGGCTCCCGCACATCGAAGGCACCAAGGTGCTGATGCTGCTC
* * ** *
12638690 GAGGCTCCCACATATCCG-AGGCACCAAGGTGCCAATACTGCTC
1 GAGGCTCCCGCACAT-CGAAGGCACCAAGGTGCTGATGCTGCTC
* *
12638733 GAGGCTCCTGTACATC-AGAGGCACCAAGGTGCTGATGCTGCTC
1 GAGGCTCCCGCACATCGA-AGGCACCAAGGTGCTGATGCTGCTC
12638776 GAGGCTC
1 GAGGCTC
12638783 TCTCACCACT
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
42 1 0.01
43 72 0.96
44 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (43 bp):
GAGGCTCCCGCACATCGAAGGCACCAAGGTGCTGATGCTGCTC
Found at i:12642775 original size:29 final size:27
Alignment explanation
Indices: 12642757--12642826 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
12642747 ATATTAAGTC
12642757 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
12642784 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
12642812 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
12642827 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:12642820 original size:28 final size:28
Alignment explanation
Indices: 12642757--12642854 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
12642747 ATATTAAGTC
*
12642757 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
12642784 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
12642812 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
12642841 CACACACTTAGTGC
1 CGCACACTTAGTGC
12642855 CAATCTCATG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:12663913 original size:42 final size:42
Alignment explanation
Indices: 12663854--12664167 Score: 229
Period size: 42 Copynumber: 7.4 Consensus size: 42
12663844 AAAGACTGAT
* * *
12663854 CGATGGTGACCGAGGCTCCCGCGCATCCAAGTACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* * * * * * *
12663896 CGATGGTACCCGAGGCTCTCGAACAACCAAGGGCCTAAGTTGT
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACC-AAGGTGC
* * * * *
12663939 CGATGGTGTCCGAGGCTCCCTCA-AGACCAAGGGCCTAGGTTGC
1 CGATGGTGCCCGAGGCTCCCGCACA-TCCAAGGACCAAGG-TGC
* ** * * *
12663982 CGATGGTG-CGGAGGCTTTCGCAAATGCAAGCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* **
12664023 CAATGGTGCCCGAGGCTCCCGCACATCCAATCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
* * * * * *
12664065 CGGTGGTGCTCGAGGCTCCCGGACGA-CCAAGGGCCTAGTTTGC
1 CGATGGTGCCCGAGGCTCCCGCAC-ATCCAAGGACCAAG-GTGC
* * * *
12664108 CGATGGTGTCCAAGGCTCCCGTACATCGAAGGCACCAAGGTGC
1 CGATGGTGCCCGAGGCTCCCGCACATCCAAGG-ACCAAGGTGC
* *
12664151 CGATGTTGCTCGAGGCT
1 CGATGGTGCCCGAGGCT
12664168 TCTACACATC
Statistics
Matches: 207, Mismatches: 56, Indels: 17
0.74 0.20 0.06
Matches are distributed among these distances:
41 10 0.05
42 105 0.51
43 88 0.43
44 4 0.02
ACGTcount: A:0.21, C:0.30, G:0.31, T:0.18
Consensus pattern (42 bp):
CGATGGTGCCCGAGGCTCCCGCACATCCAAGGACCAAGGTGC
Found at i:12663954 original size:43 final size:41
Alignment explanation
Indices: 12663893--12663997 Score: 113
Period size: 43 Copynumber: 2.5 Consensus size: 41
12663883 AGTACCAAGG
*
12663893 TGCCGATGGTACCCGAGGCT-CTCGAACAACCAAGGGCCTAAGT
1 TGCCGATGGT-GCCGAGGCTCCTC-AA-AACCAAGGGCCTAAGT
* * *
12663936 TGTCGATGGTGTCCGAGGCTCCCTCAAGACCAAGGGCCTAGGT
1 TGCCGATGGTG-CCGAGGCT-CCTCAAAACCAAGGGCCTAAGT
*
12663979 TGCCGATGGTGCGGAGGCT
1 TGCCGATGGTGCCGAGGCT
12663998 TTCGCAAATG
Statistics
Matches: 53, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
42 7 0.13
43 41 0.77
44 2 0.04
45 3 0.06
ACGTcount: A:0.20, C:0.28, G:0.33, T:0.19
Consensus pattern (41 bp):
TGCCGATGGTGCCGAGGCTCCTCAAAACCAAGGGCCTAAGT
Found at i:12663969 original size:85 final size:84
Alignment explanation
Indices: 12663854--12664128 Score: 213
Period size: 85 Copynumber: 3.2 Consensus size: 84
12663844 AAAGACTGAT
*
12663854 CGATGGTGACCGAGGCTCCCGC--GCATCCAAGTACCAAGGTGCCGATGGTACCCGAGGCTCTCG
1 CGATGGTGTCCGAGGCTCCCGCAAG-A-CCAAGTACCAAGGTGCCGATGGT-CCCGAGGCTCTCG
*
12663917 AACAACCAAGGGCCTAAGTTGT
63 AACAACCAAGGGCCTAAGTTGC
* ** * * * *
12663939 CGATGGTGTCCGAGGCTCCCTCAAGACCAAGGGCCTAGGTTGCCGATGGTGCGGAGGCTTTCGCA
1 CGATGGTGTCCGAGGCTCCCGCAAGACCAAGTACCAAGG-TGCCGATGGTCCCGAGGCTCTCG-A
** ** *
12664004 A-ATGCAAGCACC-AAGGTGC
64 ACAACCAAGGGCCTAAGTTGC
* * * * * *
12664023 CAATGGTGCCCGAGGCTCCCGCACA-TCCAA-TCACCAAGGTGCCGGTGGTGCTCGAGGCTCCCG
1 CGATGGTGTCCGAGGCTCCCGCA-AGACCAAGT-ACCAAGGTGCCGATGGT-CCCGAGGCTCTCG
* *
12664086 GACGACCAAGGGCCT-AGTTTGC
63 AACAACCAAGGGCCTAAG-TTGC
*
12664108 CGATGGTGTCCAAGGCTCCCG
1 CGATGGTGTCCGAGGCTCCCG
12664129 TACATCGAAG
Statistics
Matches: 143, Mismatches: 37, Indels: 20
0.71 0.19 0.10
Matches are distributed among these distances:
83 10 0.07
84 50 0.35
85 69 0.48
86 13 0.09
87 1 0.01
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.17
Consensus pattern (84 bp):
CGATGGTGTCCGAGGCTCCCGCAAGACCAAGTACCAAGGTGCCGATGGTCCCGAGGCTCTCGAAC
AACCAAGGGCCTAAGTTGC
Found at i:12666435 original size:38 final size:38
Alignment explanation
Indices: 12666393--12666485 Score: 134
Period size: 38 Copynumber: 2.4 Consensus size: 38
12666383 ACAGGCTATA
* * *
12666393 TGCTGGAATTATATCTGGG-TTACATCCCGCAGGCTTCG
1 TGCTGGTATTATATCTGGGTTTA-ATCCCGCAGGCCTAG
*
12666431 TGCTGGTATTATATCAGGGTTTAATCCCGCAGGCCTAG
1 TGCTGGTATTATATCTGGGTTTAATCCCGCAGGCCTAG
12666469 TGCTGGTATTATATCTG
1 TGCTGGTATTATATCTG
12666486 AGCTTAAAGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
38 46 0.94
39 3 0.06
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.34
Consensus pattern (38 bp):
TGCTGGTATTATATCTGGGTTTAATCCCGCAGGCCTAG
Found at i:12667128 original size:16 final size:18
Alignment explanation
Indices: 12667097--12667129 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
12667087 AGTTCATCAC
12667097 ACTATTGATCATTTTGGT
1 ACTATTGATCATTTTGGT
12667115 ACTATT-AT-ATTTTGG
1 ACTATTGATCATTTTGG
12667130 AGTTGATGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 2 0.13
18 6 0.40
ACGTcount: A:0.24, C:0.09, G:0.15, T:0.52
Consensus pattern (18 bp):
ACTATTGATCATTTTGGT
Found at i:12667415 original size:43 final size:43
Alignment explanation
Indices: 12667353--12667457 Score: 165
Period size: 43 Copynumber: 2.4 Consensus size: 43
12667343 TACACTGATA
* * *
12667353 CTGCTCGAGGCTCCCGCACATTCGAGGCACCAAGGTGCCGATG
1 CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
* *
12667396 TTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTTCCAATG
1 CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
12667439 CTGCTCGAGGCTCTCGCAC
1 CTGCTCGAGGCTCTCGCAC
12667458 CACCGACATT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.18, C:0.35, G:0.28, T:0.19
Consensus pattern (43 bp):
CTGCTCGAGGCTCTCGCACATCCGAGGCACCAAGGTGCCAATG
Found at i:12674062 original size:189 final size:188
Alignment explanation
Indices: 12673738--12674119 Score: 518
Period size: 189 Copynumber: 2.0 Consensus size: 188
12673728 ACTTAGTAGT
* * * *
12673738 TTTAACTGAAAATTTTTTCTATTGGCCCAAAAGAAATACAAGAAGCCGAATGAAATATGGCATGA
1 TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAATATAGCATGA
* * * * *
12673803 TGGCATGGCACGACACTATAGAAAATTGAACAAGTACCCTGACCACCAACAGTTGGGAGCTCATA
66 TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAATTGGGAGCTCACA
* * * * *
12673868 CCCGCACCACCATGGCCCCTGTTGTGCCATGTTTC-CTAAGGGGGCGGTACAGCCAAGTG
131 CCCGCACCACCA-CGCCCCCGTTATGCCATGTTTCTC-AAGGCGGCGGCACAGCCAAGTG
12673927 TTTAACTCAGAAA-TTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAAT-AAAGTATAGCAT
1 TTTAACTCA-AAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAA-TATAGCAT
* * * * * *
12673990 GATGGCATGGCACGACACGGCAGAAAATTGAACAATTGCTCAGACCACTAATAATTGGGAGCTCA
64 GATGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAATTGGGAGCTCA
*
12674055 CACCCGCACCACCACGCCCCCGTTATGCCATGTTTCTCAAGGCGGCGGCACAGTCAAGTG
129 CACCCGCACCACCACGCCCCCGTTATGCCATGTTTCTCAAGGCGGCGGCACAGCCAAGTG
12674115 TTTAA
1 TTTAA
12674120 TTAACTCCTT
Statistics
Matches: 169, Mismatches: 21, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
188 46 0.27
189 120 0.71
190 3 0.02
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.22
Consensus pattern (188 bp):
TTTAACTCAAAATTTTTTCTATTGGCCCAAAACAAATACAAGAAACCGAATGAAATATAGCATGA
TGGCATGGCACGACACGACAGAAAATTGAACAAGTACCCAGACCACCAACAATTGGGAGCTCACA
CCCGCACCACCACGCCCCCGTTATGCCATGTTTCTCAAGGCGGCGGCACAGCCAAGTG
Found at i:12679111 original size:15 final size:15
Alignment explanation
Indices: 12679091--12679126 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
12679081 CAGACCGTCT
12679091 GTCACACACGGCTTA
1 GTCACACACGGCTTA
12679106 GTCACACACGGCTTA
1 GTCACACACGGCTTA
*
12679121 GACACA
1 GTCACA
12679127 TGCCCGTGTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.33, G:0.19, T:0.17
Consensus pattern (15 bp):
GTCACACACGGCTTA
Found at i:12682769 original size:59 final size:59
Alignment explanation
Indices: 12682697--12682812 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 59
12682687 TACGACGTCC
*
12682697 GAAAGCCCCATATGAACCTTGGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
**
12682756 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTTGTGACATAGGATT
1 GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATT
12682813 CCGATATATT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 54 1.00
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.28
Consensus pattern (59 bp):
GAAAGCCCCATATGAACCTTAGGAATAGTTAGGATACATATGTCATGACATAGGATTTT
Found at i:12690553 original size:26 final size:26
Alignment explanation
Indices: 12690516--12690599 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
12690506 TGATACAAAT
* *
12690516 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTTCA
*
12690542 TGATAATGGGTTTGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12690568 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTTCA
12690594 TGATAA
1 TGATAA
12690600 GAATTTCATG
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.38
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTTCA
Found at i:12692628 original size:30 final size:32
Alignment explanation
Indices: 12692568--12692631 Score: 101
Period size: 33 Copynumber: 2.0 Consensus size: 32
12692558 CACTTATTTT
12692568 CACCTATGCCGAATGCATACACATAAATATATC
1 CACCTATGCCGAATGCA-ACACATAAATATATC
* *
12692601 CACCTATGCCGAATGCAACATATATATATAT
1 CACCTATGCCGAATGCAACACATAAATATAT
12692632 ACATATCTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.39, C:0.25, G:0.09, T:0.27
Consensus pattern (32 bp):
CACCTATGCCGAATGCAACACATAAATATATC
Found at i:12692891 original size:41 final size:41
Alignment explanation
Indices: 12692846--12693042 Score: 317
Period size: 41 Copynumber: 4.8 Consensus size: 41
12692836 ACCGGCTCTT
*
12692846 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
12692887 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
12692928 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
12692969 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
12693010 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
12693043 TAACGATAAA
Statistics
Matches: 148, Mismatches: 4, Indels: 8
0.93 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 139 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:12693237 original size:2 final size:2
Alignment explanation
Indices: 12693230--12693254 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
12693220 ATACATCCGA
12693230 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
12693255 ACTTAACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12700577 original size:41 final size:41
Alignment explanation
Indices: 12700532--12700769 Score: 399
Period size: 41 Copynumber: 5.8 Consensus size: 41
12700522 ACCGGCTCTT
*
12700532 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
12700573 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
12700614 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
12700655 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
12700696 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
12700737 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
12700770 TAACGATAAA
Statistics
Matches: 189, Mismatches: 4, Indels: 8
0.94 0.02 0.04
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 180 0.95
42 2 0.01
43 3 0.02
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:12702857 original size:27 final size:27
Alignment explanation
Indices: 12702816--12702931 Score: 160
Period size: 27 Copynumber: 4.3 Consensus size: 27
12702806 GAGGAAGCGT
*
12702816 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
12702843 TCTGGTGGCTCTGCCACAAATATCTGG
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
12702870 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* * *
12702897 TCTGGTAGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
12702925 TCTGGTG
1 TCTGGTG
12702932 ACTCCGTCAC
Statistics
Matches: 78, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
27 72 0.92
28 6 0.08
ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:12702893 original size:54 final size:55
Alignment explanation
Indices: 12702816--12702955 Score: 176
Period size: 54 Copynumber: 2.6 Consensus size: 55
12702806 GAGGAAGCGT
* * * * *
12702816 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACAAATATCTG-G
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTAGCTCTGCCACAAATATCTGTA
* *
12702870 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTAGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTAGCTCTGCCACAAATATCTGTA
* * *
12702925 TCTGGTGACTCCGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
12702956 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 59 0.79
55 16 0.21
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTAGCTCTGCCACAAATATCTGTA
Found at i:12702945 original size:27 final size:27
Alignment explanation
Indices: 12702814--12702955 Score: 137
Period size: 27 Copynumber: 5.3 Consensus size: 27
12702804 TGGAGGAAGC
* * *
12702814 GTTCTGGTGGCTATGCCACAAATATCT
1 GTTCTGGTGACTCTGCCACAATTATCT
* * *
12702841 GATCTGGTGGCTCTGCCACAAATATCT
1 GTTCTGGTGACTCTGCCACAATTATCT
* *
12702868 GGTCTGGTGGCTCTGCCAC-ATATATCT
1 GTTCTGGTGACTCTGCCACAAT-TATCT
*
12702895 GTTCTGGT-AGCTCTGCCACGATTATCT
1 GTTCTGGTGA-CTCTGCCACAATTATCT
* *
12702922 GTATCTGGTGACTCCGTCAC-ATTATCT
1 GT-TCTGGTGACTCTGCCACAATTATCT
12702949 GTTCTGG
1 GTTCTGG
12702956 CAGCCATGCT
Statistics
Matches: 102, Mismatches: 8, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.06
27 80 0.78
28 15 0.15
29 1 0.01
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.35
Consensus pattern (27 bp):
GTTCTGGTGACTCTGCCACAATTATCT
Found at i:12703041 original size:19 final size:21
Alignment explanation
Indices: 12703017--12703056 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
12703007 CTCCCCACAC
12703017 GGTGTAT-GGTTGG-TATGGG
1 GGTGTATAGGTTGGATATGGG
12703036 GGTGTATACGGTTGGATATGG
1 GGTGTATA-GGTTGGATATGG
12703057 TTGGGTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.15, C:0.03, G:0.47, T:0.35
Consensus pattern (21 bp):
GGTGTATAGGTTGGATATGGG
Found at i:12706497 original size:18 final size:18
Alignment explanation
Indices: 12706474--12706509 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12706464 TTTTTTGTGT
12706474 GCTTAATTAAATAAAATG
1 GCTTAATTAAATAAAATG
**
12706492 GCTTAATTGCATAAAATG
1 GCTTAATTAAATAAAATG
12706510 AAAACTTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.33
Consensus pattern (18 bp):
GCTTAATTAAATAAAATG
Found at i:12707934 original size:12 final size:12
Alignment explanation
Indices: 12707917--12707941 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12707907 ATGTAAGTGA
12707917 TCTTGATGATTT
1 TCTTGATGATTT
12707929 TCTTGATGATTT
1 TCTTGATGATTT
12707941 T
1 T
12707942 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:12709179 original size:55 final size:55
Alignment explanation
Indices: 12709077--12709180 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
12709067 CTTGGGCAAT
* *
12709077 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCTTGCCCGTGGATGAC
1 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCCTACCCGTGGATGAC
* * * *
12709132 ACTGTCTTTTTAACACGGCCATGGCGCACGCCCGTG-TGGCCTACCCGTG
1 ACTGACTTATTAACACGGCCATGGCACACACCCGTGCT-GCCTACCCGTG
12709181 TACAACTTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
54 1 0.02
55 41 0.98
ACGTcount: A:0.18, C:0.34, G:0.25, T:0.23
Consensus pattern (55 bp):
ACTGACTTATTAACACGGCCATGGCACACACCCGTGCTGCCTACCCGTGGATGAC
Found at i:12711718 original size:47 final size:46
Alignment explanation
Indices: 12711641--12711959 Score: 240
Period size: 47 Copynumber: 6.8 Consensus size: 46
12711631 ATGTTACAAT
12711641 GAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCAT-CAGACA
* * * * *
12711690 -AGGGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAT-ATTA-T
1 GAGAGCCAGTGTAAGACATGTCTGGGACATGCATC-GGCATCA-GACA
* *
12711735 GAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCA-CAGAGA
1 GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCAGACA
* * *
12711782 TGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTC-GACA
1 -GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAGACA
* ** * * *
12711828 GAGATAGCCAGTGTAAAATGTGTCTGGGACACGTATCGGC-T-A-AGA
1 GAG--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAGACA
* * * * * * *
12711873 GTTGTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCATATA
1 G-AGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCA-TCAGACA
12711921 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -GAGAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
12711960 ACAATATATC
Statistics
Matches: 211, Mismatches: 39, Indels: 39
0.73 0.13 0.13
Matches are distributed among these distances:
44 27 0.13
45 7 0.03
46 33 0.16
47 78 0.37
48 46 0.22
49 15 0.07
50 5 0.02
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (46 bp):
GAGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATCAGACA
Found at i:12711800 original size:94 final size:92
Alignment explanation
Indices: 12711639--12711959 Score: 368
Period size: 94 Copynumber: 3.4 Consensus size: 92
12711629 GGATGTTACA
* *
12711639 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA-AGGGCTAGTGTAA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA--CAGAGATAGTGCTAGTGTAA
12711703 GACATGTCTGGGACATGCATCAGCCATATT
64 GACATGTCTGGGACATGCATCAGCCATA-T
* * *
12711733 ATGAGAGCCAGTGTAAGACCATGTATGGGACATGGCATCGGCACAGAGATGAGTGCCAGAGTAAG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGAT-AGTGCTAGTGTAAG
* *
12711798 ACATGTCTGGGACATGCATCGGCC-TCGAC
65 ACATGTCTGGGACATGCATCAGCCAT--AT
*** * * *
12711827 A-GAGATAGCCAGTGTAA-AATGTGTCTGGGACA-CGTATCGGCTA-AGAG-TTGTGCTAGTGTA
1 ATGAG--AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACAGAGATAGTGCTAGTGTA
12711887 AGACATGTCTGGGACATGCATCAGCACGCATAT
63 AGACATGTCTGGGACATGCATCAG--C-CATAT
12711920 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
12711960 ACAATATATC
Statistics
Matches: 190, Mismatches: 23, Indels: 28
0.79 0.10 0.12
Matches are distributed among these distances:
91 32 0.17
92 17 0.09
93 30 0.16
94 98 0.52
95 13 0.07
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (92 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGAGATAGTGCTAGTGTAAGA
CATGTCTGGGACATGCATCAGCCATAT
Found at i:12718484 original size:12 final size:12
Alignment explanation
Indices: 12718467--12718491 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12718457 ATGTAAGTGA
12718467 TCTTGATGATTT
1 TCTTGATGATTT
12718479 TCTTGATGATTT
1 TCTTGATGATTT
12718491 T
1 T
12718492 TACATTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.16, T:0.60
Consensus pattern (12 bp):
TCTTGATGATTT
Found at i:12719270 original size:47 final size:47
Alignment explanation
Indices: 12719202--12719605 Score: 294
Period size: 47 Copynumber: 8.6 Consensus size: 47
12719192 TTTGTGCACC
* * *
12719202 AGTGTAAGA-CATGTCTTGGACATGCTTCGGCCACATTATGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * *
12719248 AGTGTAAGACCATGTCTAGGACATGGCATCTA--CATCCA-GACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATC-AGCCA--CATTATGAGAGCT
* * * * *
12719296 AGTGTAA-AACATGTTTGGGACAAGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * *
12719342 AGTGTAAGACCATGTCTGGGACATGGCATC-GGCATCCA-GACGAGGGCT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCA--CATTATGAGAGCT
* * * *
12719390 AGTGTAAGA-CATGTCTAGGACATGCATCAACCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
* * * * * * *
12719436 AGGGTAAGACCATGTCTAGGACATGGCATC-GGCATCCA-GACGAGGGTT
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCA--CATTATGAGAGCT
* * *
12719484 AGTGTAAGA-CATGTTTGGGACATGCATCAGCCATATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
** * *
12719530 AGTGTAAGACCATGTCTGGGACATGGCATCAG-CACAGAGATGAGTGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCAGCCACA-TTATGAGAGCT
*
12719578 AGAGTAAGA-CATGTCTGGGACATGCATC
1 AGTGTAAGACCATGTCTGGGACATGCATC
12719606 GGCCTCGACA
Statistics
Matches: 278, Mismatches: 57, Indels: 46
0.73 0.15 0.12
Matches are distributed among these distances:
45 4 0.01
46 70 0.25
47 121 0.44
48 79 0.28
49 4 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCAGCCACATTATGAGAGCT
Found at i:12719364 original size:94 final size:94
Alignment explanation
Indices: 12719202--12719748 Score: 603
Period size: 94 Copynumber: 5.8 Consensus size: 94
12719192 TTTGTGCACC
* * * *
12719202 AGTGTAAGACATGTCTT-GGACATGCTTCGGCCACATTATGAGAGCTAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGT-TTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTA
**
12719266 GGACATGGCATCTACATCCAGACGAGGGCT
65 GGACATGGCATCGGCATCCAGACGAGGGCT
* * *
12719296 AGTGTAAAACATGTTTGGGACAAGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
12719361 GACATGGCATCGGCATCCAGACGAGGGCT
66 GACATGGCATCGGCATCCAGACGAGGGCT
* * * *
12719390 AGTGTAAGACATGTCTAGGACATGCATCAACCATATTATGAGAGCCAGGGTAAGACCATGTCTAG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
*
12719455 GACATGGCATCGGCATCCAGACGAGGGTT
66 GACATGGCATCGGCATCCAGACGAGGGCT
*
12719484 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
* * * * *
12719549 GACATGGCATCAGCA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATC-CAGACGAGGGCT
* * * * * * *
12719578 AGAGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-CA-GAGATAGCCAATGTAA-AACGTGT
1 AGTGTAAGACATGTTTGGGACATGCATCAGCCAT--ATTATGAG--AGCCAGTGTAAGACCATGT
* * * * * *
12719639 CTGGGACA-CGTATCGGC-T-AAGA-GTTGTGCT
62 CTAGGACATGGCATCGGCATCCAGACG-AGGGCT
* *
12719669 AGTGTAAGACATGTTTGGGACATGCATTAGCACGCATA-TATGAGAGCCAGTATAAGACCATGTC
1 AGTGTAAGACATGTTTGGGACATGCATCAG--C-CATATTATGAGAGCCAGTGTAAGACCATGTC
*
12719733 TAGGACATGGCGTCGG
63 TAGGACATGGCATCGG
12719749 TAATATATCC
Statistics
Matches: 384, Mismatches: 54, Indels: 30
0.82 0.12 0.06
Matches are distributed among these distances:
90 1 0.00
91 33 0.09
92 9 0.02
93 28 0.07
94 301 0.78
95 12 0.03
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (94 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCCATATTATGAGAGCCAGTGTAAGACCATGTCTAG
GACATGGCATCGGCATCCAGACGAGGGCT
Done.