Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 45 of 259
Found at i:13954955 original size:40 final size:40
Alignment explanation
Indices: 13954873--13955079 Score: 242
Period size: 40 Copynumber: 5.2 Consensus size: 40
13954863 TATTCGGATG
* * * *
13954873 ATATCCGAGCTAAGTCCCGAAGGCA-TGGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
13954912 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
13954952 ATATCCGGGCTAAGTCCCGAAGGC-GTTTGGGCAAGTT-TCT
1 ATATCCGGGCTAAGTCCCGAAGGCAG-TTGTGCTA-TTGACT
** *
13954992 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
* * *
13955032 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTA-TTGACT
13955072 ATATCCGG
1 ATATCCGG
13955080 CAAAATCCTG
Statistics
Matches: 146, Mismatches: 16, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
39 26 0.18
40 116 0.79
41 4 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCAGTTGTGCTATTGACT
Found at i:13969333 original size:25 final size:25
Alignment explanation
Indices: 13969299--13969351 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
13969289 AGTAACTTGT
13969299 TCCCTCGGAACAATAGAAATCAGAA
1 TCCCTCGGAACAATAGAAATCAGAA
13969324 TCCCTCGGAACAATAGAAATCAGAA
1 TCCCTCGGAACAATAGAAATCAGAA
13969349 TCC
1 TCC
13969352 TCCACCAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.42, C:0.26, G:0.15, T:0.17
Consensus pattern (25 bp):
TCCCTCGGAACAATAGAAATCAGAA
Found at i:13973749 original size:30 final size:29
Alignment explanation
Indices: 13973715--13973774 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
13973705 TTCCCGAGCC
13973715 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATG-AAAAGTT
* * * *
13973745 TAGGGGTAAAATTGTAATTTTGAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGAAAAGTT
13973774 T
1 T
13973775 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.40, C:0.03, G:0.25, T:0.32
Consensus pattern (29 bp):
TAGGGGCAAAAGTGTAAATATGAAAAGTT
Found at i:13974353 original size:68 final size:68
Alignment explanation
Indices: 13974239--13974365 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 68
13974229 CAAATGGTAT
* *
13974239 GTAGCTAGGTCACATGTGTAATACAGGATGTATACCATGTGTACAAGAGAGCTACGAGACATTAT
1 GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGCTACGAGACATTAT
13974304 GAG
66 GAG
* * *
13974307 GTAGCTAGGTCGCATGGGTTATACTATG-TGTACACCATGTAG-ACAAGAGAGCTACGAGA
1 GTAGCTAGGTCACATGGGTAATAC-AGGATGTACACCATGT-GTACAAGAGAGCTACGAGA
13974366 TAAATGTAGC
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
68 49 0.94
69 3 0.06
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (68 bp):
GTAGCTAGGTCACATGGGTAATACAGGATGTACACCATGTGTACAAGAGAGCTACGAGACATTAT
GAG
Found at i:13976070 original size:40 final size:39
Alignment explanation
Indices: 13975986--13976170 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
13975976 TTGAATGATG
* * * *
13975986 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTTACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
13976026 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
13976066 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
13976105 TCCGGGTTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
13976146 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
13976171 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:13976122 original size:79 final size:81
Alignment explanation
Indices: 13975986--13976170 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
13975976 TTGAATGATG
* *
13975986 TCCGGGCTAAGTCCCAAAGGC-TTTGTGCTAAGTTACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATT
*
13976050 TGTGCGAGATACTA-A
66 TGTACGAGATACTATA
* * **
13976065 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAATCCGGACTAAGAT-CCGAAGGCA
*
13976127 TTTGTACGAGTTACTATA
64 TTTGTACGAGATACTATA
* *
13976145 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
13976171 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTTACCAAATCCGGACTAAGATCCGAAGGCATT
TGTACGAGATACTATA
Found at i:13976192 original size:79 final size:79
Alignment explanation
Indices: 13976039--13976203 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
13976029 GGACTAAGAT
* * **
13976039 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
13976104 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
13976118 CCGAAGGCATTTGTACGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTACGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
13976181 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
13976197 CCGAAGG
1 CCGAAGG
13976204 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:13978123 original size:12 final size:12
Alignment explanation
Indices: 13978106--13978132 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
13978096 AAAGGAATTC
13978106 TATATTCTGAGA
1 TATATTCTGAGA
13978118 TATATTCTGAGA
1 TATATTCTGAGA
13978130 TAT
1 TAT
13978133 TTAAGTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.15, T:0.44
Consensus pattern (12 bp):
TATATTCTGAGA
Found at i:13980278 original size:8 final size:8
Alignment explanation
Indices: 13980267--13980291 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
13980257 ATACAGACTA
13980267 AATAAAAT
1 AATAAAAT
13980275 AATAAAAT
1 AATAAAAT
13980283 AATAAAAT
1 AATAAAAT
13980291 A
1 A
13980292 TTTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:13980877 original size:19 final size:19
Alignment explanation
Indices: 13980853--13980898 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
13980843 CTATTTCTAG
13980853 CCATATTTTGAAGTAAGGT
1 CCATATTTTGAAGTAAGGT
13980872 CCATATTTTGAAGTAAGGT
1 CCATATTTTGAAGTAAGGT
*
13980891 TCATATTT
1 CCATATTT
13980899 AAAATTTGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.41
Consensus pattern (19 bp):
CCATATTTTGAAGTAAGGT
Found at i:13989930 original size:19 final size:20
Alignment explanation
Indices: 13989906--13989943 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
13989896 GGTACCACCA
13989906 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
13989925 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
13989944 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:13990231 original size:46 final size:45
Alignment explanation
Indices: 13990164--13990338 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
13990154 TGTAACCTGC
13990164 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCAT
* *
13990210 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* * *
13990256 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
*
13990303 CCATAAGTGAACTCGGACTCAACTCAATGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
13990339 ATGCTCAACC
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 4 0.04
46 63 0.58
47 30 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:13990284 original size:93 final size:93
Alignment explanation
Indices: 13990172--13990342 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
13990162 GCCCATAAGT
13990172 GAACTCGGACTCAACTCAACGAGTTCAGG-CATTCGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
13990236 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
*
13990265 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
13990330 TGAGTTCGGATGC
66 CGAGTTCGGATGC
13990343 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:13990796 original size:30 final size:30
Alignment explanation
Indices: 13990762--13990821 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
13990752 ATTTAATACG
13990762 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
13990792 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
13990822 GGCTCAGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:13992881 original size:16 final size:16
Alignment explanation
Indices: 13992862--13992895 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
13992852 TGCTTATAAA
*
13992862 TTTTAGTACTTAATTT
1 TTTTAGCACTTAATTT
*
13992878 TTTTAGCATTTAATTT
1 TTTTAGCACTTAATTT
13992894 TT
1 TT
13992896 CAATTTATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.65
Consensus pattern (16 bp):
TTTTAGCACTTAATTT
Found at i:13993230 original size:51 final size:51
Alignment explanation
Indices: 13993133--13993231 Score: 119
Period size: 51 Copynumber: 1.9 Consensus size: 51
13993123 ATGTATTTTT
* * **
13993133 AAAATATATATTAAGGGTGGAGGGAGAGAGATGGGTGGCAGCAGTATTAAA
1 AAAATATATATTAAGAGTGGAGGGAGAGAGATAGGCAGCAGCAGTATTAAA
* * *
13993184 AAAATATTTTTTAAGAGTGGATGGAGAGAGATAGGCAGCA-CTAGTATT
1 AAAATATATATTAAGAGTGGAGGGAGAGAGATAGGCAGCAGC-AGTATT
13993232 TTCTAGTGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
50 1 0.03
51 39 0.98
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.25
Consensus pattern (51 bp):
AAAATATATATTAAGAGTGGAGGGAGAGAGATAGGCAGCAGCAGTATTAAA
Found at i:13993311 original size:27 final size:27
Alignment explanation
Indices: 13993259--13993311 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
13993249 AATTTAATTG
**
13993259 GTGGAGGGTGAGAGAGAGGCGGCACCA
1 GTGGAGGGTGAGAGAGAGGCAACACCA
13993286 GTGGAGGGTGAGAGAGAGGCAACACC
1 GTGGAGGGTGAGAGAGAGGCAACACC
13993312 CATGTTGTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.49, T:0.08
Consensus pattern (27 bp):
GTGGAGGGTGAGAGAGAGGCAACACCA
Found at i:13993500 original size:17 final size:18
Alignment explanation
Indices: 13993466--13993500 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
13993456 AAATAAAATA
*
13993466 TTTAGAAATTTAATTATT
1 TTTACAAATTTAATTATT
13993484 TTTACAAATTT-ATTATT
1 TTTACAAATTTAATTATT
13993501 GAAATGGATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTACAAATTTAATTATT
Found at i:13994742 original size:12 final size:12
Alignment explanation
Indices: 13994712--13994744 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
13994702 ACCCGAAAGC
*
13994712 ATAGATAGCTAA
1 ATAGATGGCTAA
13994724 ATAGATGGCTAA
1 ATAGATGGCTAA
13994736 ATAGATGGC
1 ATAGATGGC
13994745 CATGGAGCAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (12 bp):
ATAGATGGCTAA
Found at i:13998066 original size:14 final size:14
Alignment explanation
Indices: 13998043--13998072 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
13998033 TTGAAAATAT
13998043 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
13998057 GTTGATTTGGATTG
1 GTTGAATTGGATTG
13998071 GT
1 GT
13998073 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:14000553 original size:27 final size:26
Alignment explanation
Indices: 14000536--14000610 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 26
14000526 ATATTAAGTC
14000536 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
14000563 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
* *
14000591 CGCACACTTAGTGCTGTATA
1 CGCACACTCAGTGCTATATA
14000611 ATTTAAACCT
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 23 0.51
28 22 0.49
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:14000628 original size:29 final size:28
Alignment explanation
Indices: 14000536--14000633 Score: 137
Period size: 28 Copynumber: 3.5 Consensus size: 28
14000526 ATATTAAGTC
*
14000536 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
14000563 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
14000591 CGCACACTTAGTGCTGTATAATTTAAAC-
1 CGCACACTTAGTGCTATATAA-TCAAACT
14000619 CTGCACACTTAGTGC
1 C-GCACACTTAGTGC
14000634 CAATCTCATG
Statistics
Matches: 65, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
27 22 0.34
28 25 0.38
29 18 0.28
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:14007894 original size:28 final size:27
Alignment explanation
Indices: 14007831--14007899 Score: 120
Period size: 27 Copynumber: 2.5 Consensus size: 27
14007821 ATATTAAGTC
*
14007831 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTATATAATCAACT
14007858 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATC-AACT
14007886 CGCACACTTAGTGC
1 CGCACACTTAGTGC
14007900 AGTACAATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTATATAATCAACT
Found at i:14010037 original size:24 final size:24
Alignment explanation
Indices: 14010005--14010065 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
14009995 ACTTATTCGC
** *
14010005 ACACATAGTGCCATGTTTTCTTGA
1 ACACATAGTGCCATGTAATCTCGA
*
14010029 ACACATAGTGCCATGTAATCTCGC
1 ACACATAGTGCCATGTAATCTCGA
14010053 ACACATAGTGCCA
1 ACACATAGTGCCA
14010066 CATAGCCTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (24 bp):
ACACATAGTGCCATGTAATCTCGA
Found at i:14010078 original size:24 final size:24
Alignment explanation
Indices: 14010024--14010087 Score: 74
Period size: 24 Copynumber: 2.7 Consensus size: 24
14010014 GCCATGTTTT
* ** *
14010024 CTTGAACACATAGTGCCATGTAAT
1 CTTGCACACATAGTGCCACATAAC
* *
14010048 CTCGCACACATAGTGCCACATAGC
1 CTTGCACACATAGTGCCACATAAC
14010072 CTTGCACACATAGTGC
1 CTTGCACACATAGTGC
14010088 TGTATTTTCT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (24 bp):
CTTGCACACATAGTGCCACATAAC
Found at i:14013172 original size:16 final size:16
Alignment explanation
Indices: 14013151--14013188 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
14013141 TTACCATTAA
14013151 AATTTAATATGTGACC
1 AATTTAATATGTGACC
14013167 AATTTAATATGTGACC
1 AATTTAATATGTGACC
14013183 AATTTA
1 AATTTA
14013189 GTAGGAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (16 bp):
AATTTAATATGTGACC
Found at i:14021829 original size:24 final size:23
Alignment explanation
Indices: 14021772--14021829 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
14021762 TTAGACACCA
* *
14021772 ATTGTGTTTTATGAATCATATAT
1 ATTGTGTTTTATGAAGCACATAT
*
14021795 ATTGTTGTTTTATGAAGGACATAT
1 ATTG-TGTTTTATGAAGCACATAT
14021819 ATTGTGATTTT
1 ATTGTG-TTTT
14021830 TTTATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.20
24 24 0.80
ACGTcount: A:0.28, C:0.03, G:0.17, T:0.52
Consensus pattern (23 bp):
ATTGTGTTTTATGAAGCACATAT
Found at i:14022620 original size:16 final size:18
Alignment explanation
Indices: 14022596--14022639 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 18
14022586 GACATCTATA
*
14022596 TAATCAAATT-TATT-TT
1 TAATTAAATTATATTATT
14022612 TAATTAAATTATATTATT
1 TAATTAAATTATATTATT
14022630 TAATATAAAT
1 TAAT-TAAAT
14022640 AAAAATTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 9 0.38
17 4 0.17
18 6 0.25
19 5 0.21
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATTAAATTATATTATT
Found at i:14023239 original size:27 final size:24
Alignment explanation
Indices: 14023200--14023250 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 24
14023190 GGCCAAAAAA
*
14023200 TATTATATATAAATATAAAGTTACT
1 TATTATATATAAATA-AAAATTACT
14023225 TATTATATAAATAAATAAAAATTACT
1 TATTATAT--ATAAATAAAAATTACT
14023251 GTTTAAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 8 0.35
26 8 0.35
27 7 0.30
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (24 bp):
TATTATATATAAATAAAAATTACT
Found at i:14029637 original size:112 final size:112
Alignment explanation
Indices: 14029419--14029638 Score: 264
Period size: 113 Copynumber: 2.0 Consensus size: 112
14029409 TTCACTGTTG
* * * *
14029419 ATAGCTTTGTGCTTTAGCTGAGCTATCTATATTTGAAATGCATTTGACCTTAAAGTTGAAAGAGT
1 ATAGCTTTGTGCATTAACTGAGCTATCTATATTTGAAATACATTTGACCTTAAAG-TGAAAAAGT
* * *
14029484 AAAAAGCTATACTGTGAGATCTAAAAGGGTTGTTGAGTGCTGACACTT
65 AAAAAGCTATACTGTGAGATCTAAAAGGATAGTTGAATGCTGACACTT
* * * * **
14029532 ATAGTTTTGTGCATTAACTTAGCTATCTATATTTGAAATACGTTTGTCCTTGTAG-GAAAAAAGT
1 ATAGCTTTGTGCATTAACTGAGCTATCTATATTTGAAATACATTTGACCTTAAAGTG-AAAAAGT
* *
14029596 AGAAAA-CTATATTTTGAGATCTAAAAGGATAGTTGAATGCTGA
65 A-AAAAGCTATACTGTGAGATCTAAAAGGATAGTTGAATGCTGA
14029639 AACCTTTTAG
Statistics
Matches: 90, Mismatches: 15, Indels: 5
0.82 0.14 0.05
Matches are distributed among these distances:
111 1 0.01
112 39 0.43
113 50 0.56
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.35
Consensus pattern (112 bp):
ATAGCTTTGTGCATTAACTGAGCTATCTATATTTGAAATACATTTGACCTTAAAGTGAAAAAGTA
AAAAGCTATACTGTGAGATCTAAAAGGATAGTTGAATGCTGACACTT
Found at i:14048074 original size:18 final size:18
Alignment explanation
Indices: 14048047--14048089 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14048037 TCAAATTCTT
* *
14048047 GTGAGAGTTAAGAGCATG
1 GTGAGTGTTAAAAGCATG
*
14048065 GTGAGTGTTAAAAGCATT
1 GTGAGTGTTAAAAGCATG
14048083 GTGAGTG
1 GTGAGTG
14048090 AAAGAATGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.37, T:0.28
Consensus pattern (18 bp):
GTGAGTGTTAAAAGCATG
Found at i:14048319 original size:32 final size:32
Alignment explanation
Indices: 14048278--14048340 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
14048268 TTGGTTAGTG
14048278 GAAACATTATGATTAAGGGTATTAATAAGACC
1 GAAACATTATGATTAAGGGTATTAATAAGACC
14048310 GAAACATTATGATTAAGGGTATTAATAAGAC
1 GAAACATTATGATTAAGGGTATTAATAAGAC
14048341 TGATTGACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (32 bp):
GAAACATTATGATTAAGGGTATTAATAAGACC
Found at i:14051025 original size:18 final size:19
Alignment explanation
Indices: 14051002--14051046 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
14050992 TATTTGATAT
14051002 AGAAATGGAAAATA-AATG
1 AGAAATGGAAAATAGAATG
* *
14051020 AGAAATAG-AACTAGAATG
1 AGAAATGGAAAATAGAATG
14051038 AGAAATGGA
1 AGAAATGGA
14051047 GTACTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.58, C:0.02, G:0.24, T:0.16
Consensus pattern (19 bp):
AGAAATGGAAAATAGAATG
Found at i:14054523 original size:5 final size:5
Alignment explanation
Indices: 14054515--14054551 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
14054505 AAAAAATAAA
14054515 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT
14054552 GGTTGGTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:14066058 original size:23 final size:24
Alignment explanation
Indices: 14066022--14066075 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
14066012 TATTGTTTTT
*
14066022 AGCTCATTAAAGCTTACCGTT-TC
1 AGCTCAATAAAGCTTACCGTTATC
* *
14066045 AGCTCAATAGAGCTTACTGTTCATC
1 AGCTCAATAAAGCTTACCGTT-ATC
14066070 AGCTCA
1 AGCTCA
14066076 GGAGGAGCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 18 0.69
25 8 0.31
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (24 bp):
AGCTCAATAAAGCTTACCGTTATC
Found at i:14069246 original size:18 final size:19
Alignment explanation
Indices: 14069220--14069259 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
14069210 TGTTCTTTTA
14069220 TTGGACCTTTAGTTTT-GT
1 TTGGACCTTTAGTTTTAGT
* *
14069238 TTGGGCCTTTGGTTTTAGT
1 TTGGACCTTTAGTTTTAGT
14069257 TTG
1 TTG
14069260 CTTTGTCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.07, C:0.10, G:0.28, T:0.55
Consensus pattern (19 bp):
TTGGACCTTTAGTTTTAGT
Found at i:14070931 original size:22 final size:21
Alignment explanation
Indices: 14070890--14070932 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
14070880 AATTGAAAAT
*
14070890 AAACAAAAAAAAAGAGTTAAA
1 AAACAAAAAAAAAGAATTAAA
14070911 AAACATAAAAGAAAA-AATTAAA
1 AAACA-AAAA-AAAAGAATTAAA
14070933 TTGCTCAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 5 0.26
22 10 0.53
23 4 0.21
ACGTcount: A:0.77, C:0.05, G:0.07, T:0.12
Consensus pattern (21 bp):
AAACAAAAAAAAAGAATTAAA
Found at i:14072437 original size:7 final size:7
Alignment explanation
Indices: 14072427--14072455 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
14072417 AAAATAAGAT
14072427 ATTATAA
1 ATTATAA
14072434 ATTATAA
1 ATTATAA
14072441 ATTATAA
1 ATTATAA
14072448 ATTATAA
1 ATTATAA
14072455 A
1 A
14072456 AATCGGTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTATAA
Found at i:14072648 original size:15 final size:16
Alignment explanation
Indices: 14072628--14072657 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14072618 TTTTAAACAA
14072628 AAAATTATAT-TTTTG
1 AAAATTATATATTTTG
14072643 AAAATTATATATTTT
1 AAAATTATATATTTT
14072658 TTAAACAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
AAAATTATATATTTTG
Found at i:14072922 original size:8 final size:7
Alignment explanation
Indices: 14072891--14072920 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
14072881 TTTTTTAAAA
14072891 TATTTTT
1 TATTTTT
14072898 TATTTTT
1 TATTTTT
14072905 TATTTTT
1 TATTTTT
*
14072912 AATTTTT
1 TATTTTT
14072919 TA
1 TA
14072921 ATAATTTAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (7 bp):
TATTTTT
Found at i:14074697 original size:7 final size:7
Alignment explanation
Indices: 14074685--14074710 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14074675 GATCACGTCT
14074685 TCCCACA
1 TCCCACA
14074692 TCCCACA
1 TCCCACA
14074699 TCCCACA
1 TCCCACA
14074706 TCCCA
1 TCCCA
14074711 TTCCCCATGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.58, G:0.00, T:0.15
Consensus pattern (7 bp):
TCCCACA
Found at i:14084687 original size:408 final size:408
Alignment explanation
Indices: 14083931--14084915 Score: 1675
Period size: 408 Copynumber: 2.4 Consensus size: 408
14083921 TTCATCCGGC
*
14083931 TAATACATACTTCATCTGGCTAAATTATGCATTTGATTTACAATTATAATTACGTTCTTCAACCG
1 TAATACATACTTCATCTGGCTAAATTATGCATTTGATTTACTATTATAATTACGTTCTTCAA-CG
* * * *
14083996 GGAGAAGGATGACTATCATTTGTAATATACATCAATGAAACTTTTTACTATCGTACAGTTGTTAT
65 GGGGAAGGATGACTATCCTTTGTAATATACGTCAATGAAACTTTTTAATATCGTACAGTTGTTAT
* *
14084061 TAATACTCGAATTTATAACAAGCCATATGGAATGTTCAGTTCTTTTTTATTTTAATAACATATGA
130 TAATACTCGAATTTATAACAAGCCATATGGAATGTTCAGTTCTGTTTTATTTTAATAACACATGA
* * * *
14084126 ACGATGTCGACATTAATATTTAAGGTAAACTCGTGGATTATATAGTTAATGAAAGTTGGTAATAT
195 ACGATGTCGACATTAATATTTAAGGCAAACTCGTGGATTATACAGTCAATGAAAGTTGGAAATAT
14084191 TGTAAAGTTATTTTTAATACTCGGTTTTATAACAAGCAAACACCAGGAACAAGAAAGTCCAAAAT
260 TGTAAAGTTATTTTTAATACTCGGTTTTATAACAAGCAAACACCAGGAACAAGAAAGTCCAAAAT
*
14084256 CCGCCCTCAACGTTTGCACATTTTTGCATGTAAGTCCTTATACAATTTACATTCGTAACCCGAAG
325 CCACCCTCAACGTTTGCACATTTTTGCATGTAAGTCCTTATACAATTTACATTCGTAACCCGAAG
* *
14084321 GACGTATGAGTATATCTGT
390 GACGTATGAATATATATGT
* *
14084340 TAATACATACTTCATCCGGCTAAATTATGCATTTGATTTATTATTATAATTACGTTCTTCAATCG
1 TAATACATACTTCATCTGGCTAAATTATGCATTTGATTTACTATTATAATTACGTTCTTCAA-CG
* *
14084405 GGGGAAGGATGACTATCCTTTGTAATACACGCCAATGAAACTTTTTAATATC-TACAGTTGTTAT
65 GGGGAAGGATGACTATCCTTTGTAATATACGTCAATGAAACTTTTTAATATCGTACAGTTGTTAT
*
14084469 TAATACTCGGATTTATAACAAGCCATATGGAATGTTCAGTTCTGTTTTATTTTAATAACACATGA
130 TAATACTCGAATTTATAACAAGCCATATGGAATGTTCAGTTCTGTTTTATTTTAATAACACATGA
14084534 ACGATGTCGACATTAATATTTAAGGCAAACTCGTGGATTATACAGTCAATGAAAGTTGGAAATAT
195 ACGATGTCGACATTAATATTTAAGGCAAACTCGTGGATTATACAGTCAATGAAAGTTGGAAATAT
* *
14084599 TGTAAAGTTGTTTTTAATACTCGGTTTTATAACAAGCAAACACCCGGAACAAGAAAGTCCAAAAT
260 TGTAAAGTTATTTTTAATACTCGGTTTTATAACAAGCAAACACCAGGAACAAGAAAGTCCAAAAT
** * *
14084664 TTACCCTCAACGTTTGCACATTTTTGCATGTAATTCCTTATACAATTTACATTCGTAACCCGGAG
325 CCACCCTCAACGTTTGCACATTTTTGCATGTAAGTCCTTATACAATTTACATTCGTAACCCGAAG
14084729 GACGTATGAATATATATGT
390 GACGTATGAATATATATGT
*
14084748 TAATACATACTTCATCTGGCTAAATTATGCATTTGATTTACTATTATAAGTACGTTCTTCAACGA
1 TAATACATACTTCATCTGGCTAAATTATGCATTTGATTTACTATTATAATTACGTTCTTCAACG-
* *
14084813 GGGGAAGGATGACTATCCTTTGTAATATTCGTCAATGAAACTTTTTAATATCGTACAGTTATTAT
65 GGGGAAGGATGACTATCCTTTGTAATATACGTCAATGAAACTTTTTAATATCGTACAGTTGTTAT
*
14084878 TAATACTCGAATTTATAACAAGCCGTATGGAATGTTCA
130 TAATACTCGAATTTATAACAAGCCATATGGAATGTTCA
14084916 TCCTCACACT
Statistics
Matches: 539, Mismatches: 35, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
407 2 0.00
408 383 0.71
409 154 0.29
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (408 bp):
TAATACATACTTCATCTGGCTAAATTATGCATTTGATTTACTATTATAATTACGTTCTTCAACGG
GGGAAGGATGACTATCCTTTGTAATATACGTCAATGAAACTTTTTAATATCGTACAGTTGTTATT
AATACTCGAATTTATAACAAGCCATATGGAATGTTCAGTTCTGTTTTATTTTAATAACACATGAA
CGATGTCGACATTAATATTTAAGGCAAACTCGTGGATTATACAGTCAATGAAAGTTGGAAATATT
GTAAAGTTATTTTTAATACTCGGTTTTATAACAAGCAAACACCAGGAACAAGAAAGTCCAAAATC
CACCCTCAACGTTTGCACATTTTTGCATGTAAGTCCTTATACAATTTACATTCGTAACCCGAAGG
ACGTATGAATATATATGT
Found at i:14087136 original size:31 final size:31
Alignment explanation
Indices: 14087098--14087161 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
14087088 AATCCAAGTT
14087098 GGCACTTAAAATCTAATTGGACTACCACGTA
1 GGCACTTAAAATCTAATTGGACTACCACGTA
* *
14087129 GGCACTTAAAATCTAGTTGGACTGCCACGTA
1 GGCACTTAAAATCTAATTGGACTACCACGTA
14087160 GG
1 GG
14087162 ATTACTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (31 bp):
GGCACTTAAAATCTAATTGGACTACCACGTA
Found at i:14100501 original size:30 final size:29
Alignment explanation
Indices: 14100467--14100530 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
14100457 ATGAATCGGA
*
14100467 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTGTGCGATCT-AACT
14100497 AGCTTTGGCACTAAGTGTGCGATCTAACT
1 AGCTTTGGCACTAAGTGTGCGATCTAACT
14100526 AGCTT
1 AGCTT
14100531 CGGCTACTTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.27
30 24 0.73
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (29 bp):
AGCTTTGGCACTAAGTGTGCGATCTAACT
Found at i:14102623 original size:49 final size:49
Alignment explanation
Indices: 14102537--14102782 Score: 285
Period size: 49 Copynumber: 5.0 Consensus size: 49
14102527 GTAGCCGAAG
* * *
14102537 CTATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * * **
14102586 TTATCCGGTGCACGTAGTAGCCTGCACTTAGTACTACACACATGACCTAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC-AA
* * * *
14102636 CCATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA
* ** * *
14102686 GTTATCAAGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
* * *
14102736 CAATTTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACC
14102783 TCACAATAGC
Statistics
Matches: 162, Mismatches: 32, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 78 0.48
50 46 0.28
51 38 0.23
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (49 bp):
CTATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCGACCAA
Found at i:14113779 original size:27 final size:26
Alignment explanation
Indices: 14113748--14114106 Score: 153
Period size: 27 Copynumber: 13.6 Consensus size: 26
14113738 TTAGTTTACC
* *
14113748 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTAC-CAAATACCCTCGATTTGTA
*
14113775 AAATTACCAAAGTACCC-CTGATTTATA
1 AAATTACCAAA-TACCCTC-GATTTGTA
*
14113802 AAATTATCCAAATATCCTCGATTTGTA
1 AAATTA-CCAAATACCCTCGATTTGTA
* *
14113829 AAATTACGAAATA----AGA----TA
1 AAATTACCAAATACCCTCGATTTGTA
* ** *
14113847 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCA-AATACCCTCGATTTGTA
* *** **
14113874 GAATTACCGTTTTACCCTCGATTTACA
1 AAATTACC-AAATACCCTCGATTTGTA
* ** *
14113901 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCA-AATACCCTCGATTTGTA
* ** *
14113928 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCA-AATACCCTCGATTTGTA
* ** ** **
14113955 GAATTACCATTTTACCCTTAATTTACA
1 AAATTACCA-AATACCCTCGATTTGTA
* * * *
14113982 AAATTACTGAAATACCCTTGGTTTATA
1 AAATTAC-CAAATACCCTCGATTTGTA
**
14114009 AAATTACCAAAATACCCTCGATTAATA
1 AAATTACC-AAATACCCTCGATTTGTA
* *
14114036 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACC-AAATACCCTCGATTTGTA
*
14114063 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACC-AAATACCCTC-GATTTGTA
14114090 AAATTACCAAAATACCC
1 AAATTACC-AAATACCC
14114107 CTATAGGATA
Statistics
Matches: 277, Mismatches: 37, Indels: 36
0.79 0.11 0.10
Matches are distributed among these distances:
18 9 0.03
19 2 0.01
22 2 0.01
23 2 0.01
26 10 0.04
27 245 0.88
28 7 0.03
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (26 bp):
AAATTACCAAATACCCTCGATTTGTA
Found at i:14113988 original size:54 final size:54
Alignment explanation
Indices: 14113844--14113972 Score: 240
Period size: 54 Copynumber: 2.4 Consensus size: 54
14113834 ACGAAATAAG
*
14113844 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
*
14113898 ACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
14113952 ATAGAATTACCATTTTACCCT
1 ATAGAATTACCATTTTACCCT
14113973 TAATTTACAA
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.29, C:0.23, G:0.08, T:0.40
Consensus pattern (54 bp):
ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
Found at i:14113998 original size:54 final size:53
Alignment explanation
Indices: 14113844--14114042 Score: 218
Period size: 54 Copynumber: 3.7 Consensus size: 53
14113834 ACGAAATAAG
*
14113844 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTA-CGATTTACCCTCGATTT
* *
14113898 ACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACGA-TTTACCCTCGATTT
** * * ** * *
14113952 ATAGAATTACCATTTTACCCTTAATTTACAAAATTACTGAAATACCCTTGGTTT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTAC-GATTTACCCTCGATTT
* *** * *
14114006 ATAAAATTACCAAAATACCCTCGATTAATAAAATTAC
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTAC
14114043 CAAAATACCC
Statistics
Matches: 122, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 1 0.01
54 120 0.98
55 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (53 bp):
ATAGAATTACCATTTTACCCTCGATTTATAGAATTACGATTTACCCTCGATTT
Found at i:14113998 original size:81 final size:81
Alignment explanation
Indices: 14113844--14114044 Score: 251
Period size: 81 Copynumber: 2.5 Consensus size: 81
14113834 ACGAAATAAG
* * *
14113844 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACC
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACC
**
14113909 ATTTTACCCTCGATTT
66 ATAATACCCTCGATTT
*
14113925 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTTAATTTACAAAATTACT
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTAC-
* * *
14113990 GA-AATACCCTTGGTTT
65 CATAATACCCTCGATTT
* *** * *
14114006 ATAAAATTACCAAAATACCCTCGATTAATAAAATTACCA
1 ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCA
14114045 AAATACCCTT
Statistics
Matches: 104, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 103 0.99
82 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.07, T:0.37
Consensus pattern (81 bp):
ATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCAATTTACAAAATTACC
ATAATACCCTCGATTT
Found at i:14114049 original size:54 final size:54
Alignment explanation
Indices: 14113859--14114106 Score: 201
Period size: 54 Copynumber: 4.6 Consensus size: 54
14113849 ATTACCATTT
* **** * * * * ***
14113859 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
* *** * * * ***
14113913 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
** * **
14113967 TACCCTTAATTTACAAAATTACTGAAATACCCTTGGTTTATAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
* *
14114021 TACCCTCGATTAATAAAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
* *
14114075 TACCC-CTGATTTGTGAAATTACCAAAATACCC
1 TACCCTC-GATTTATAAAATTACCAAAATACCC
14114107 CTATAGGATA
Statistics
Matches: 166, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
53 1 0.01
54 165 0.99
ACGTcount: A:0.35, C:0.22, G:0.08, T:0.35
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACCAAAATACCCTTGGTTTATAAAATTACCAAAA
Found at i:14114052 original size:81 final size:81
Alignment explanation
Indices: 14113894--14114106 Score: 210
Period size: 81 Copynumber: 2.6 Consensus size: 81
14113884 TTTACCCTCG
* *** * * *** * *
14113894 ATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAAT
1 ATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGATTAATAAAAT
***
14113959 TACCATTTTACCCTTA
66 TACCAAAATACCCTTA
** *
14113975 ATTTACAAAATTACTGAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTAATAAAAT
1 ATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGATTAATAAAAT
*
14114040 TACCAAAATACCCTTG
66 TACCAAAATACCCTTA
* ** * * *
14114056 GTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCC
1 ATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCC
14114107 CTATAGGATA
Statistics
Matches: 105, Mismatches: 27, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
81 105 1.00
ACGTcount: A:0.38, C:0.21, G:0.07, T:0.34
Consensus pattern (81 bp):
ATTTACAAAATTACCAAAATACCCTTGATTTATAAAATTACCAAAATACCCTCGATTAATAAAAT
TACCAAAATACCCTTA
Found at i:14114107 original size:27 final size:27
Alignment explanation
Indices: 14113915--14114108 Score: 158
Period size: 27 Copynumber: 7.1 Consensus size: 27
14113905 TACCATTTTA
* ***
14113915 CCCTCGATTTATAGAATTACCATTTTA-
1 CCCT-GATTTATAAAATTACCAAAATAC
* ***
14113942 CCCTCGATTTATAGAATTACCATTTTAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* * * **
14113970 CCTTAATTTACAAAATTACTGAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* *
14113997 CCTTGGTTTATAAAATTACCAAAATA-
1 CCCTGATTTATAAAATTACCAAAATAC
*
14114023 CCCTCGATTAATAAAATTACCAAAATAC
1 CCCT-GATTTATAAAATTACCAAAATAC
* * *
14114051 CCTTGGTTTGTAAAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
* *
14114078 CCCTGATTTGTGAAATTACCAAAATAC
1 CCCTGATTTATAAAATTACCAAAATAC
14114105 CCCT
1 CCCT
14114109 ATAGGATAGA
Statistics
Matches: 140, Mismatches: 24, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
26 3 0.02
27 131 0.94
28 6 0.04
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.34
Consensus pattern (27 bp):
CCCTGATTTATAAAATTACCAAAATAC
Found at i:14114121 original size:27 final size:27
Alignment explanation
Indices: 14114064--14114233 Score: 164
Period size: 27 Copynumber: 6.3 Consensus size: 27
14114054 TGGTTTGTAA
**
14114064 AATTACCAAAATACCCCTGAT-TTGT-G
1 AATTACCAAAATACCCCT-ATAGGGTAG
*
14114090 AAATTACCAAAATACCCCTATAGGATAG
1 -AATTACCAAAATACCCCTATAGGGTAG
* **
14114118 AATTACCGAAATACCATTATAGGGTAG
1 AATTACCAAAATACCCCTATAGGGTAG
** *
14114145 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTATAGGGTAG
* *
14114172 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTATAGGGTAG
* * * * *
14114199 AATTACCAAGATACCCTTGTGGGGTAA
1 AATTACCAAAATACCCCTATAGGGTAG
14114226 AATTACCA
1 AATTACCA
14114234 TTTTTCCCCT
Statistics
Matches: 124, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
26 2 0.02
27 121 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (27 bp):
AATTACCAAAATACCCCTATAGGGTAG
Found at i:14114122 original size:54 final size:52
Alignment explanation
Indices: 14114010--14114187 Score: 151
Period size: 54 Copynumber: 3.3 Consensus size: 52
14114000 TGGTTTATAA
* * * ** *
14114010 AATTACCAAAATACCCTCGATTAATAAAATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCT-GATTAGTGAAATTACCAAAATACCCCT-GTAGGTAG
* *
14114064 AATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCCCTATAGGATAG
1 AATTACCAAAATA-CCCTGATTAGTGAAATTACCAAAATACCCCTGTAGG-TAG
* * * * **
14114118 AATTACCGAAATACCATTA-TAGGGTAGAATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCTGATTAGTG-A-AATTACCAAAATACCCCTGTA-GGTAG
*
14114172 AATTACCGAAATACCC
1 AATTACCAAAATACCC
14114188 CTGTAGGGTA
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
52 3 0.03
53 7 0.07
54 86 0.84
55 6 0.06
ACGTcount: A:0.40, C:0.21, G:0.12, T:0.26
Consensus pattern (52 bp):
AATTACCAAAATACCCTGATTAGTGAAATTACCAAAATACCCCTGTAGGTAG
Found at i:14114122 original size:81 final size:81
Alignment explanation
Indices: 14113981--14114231 Score: 226
Period size: 81 Copynumber: 3.1 Consensus size: 81
14113971 CTTAATTTAC
* * * * *
14113981 AAAATTACTGAAATACCCTTGGTTTATAAAATTACCAAAATACCCTCGATTA--ATAAAATTACC
1 AAAATTACTGAAATACCCCT-GTTTGTGAAATTACCAAAATACCC-CTA-TAGGATAGAATTACC
* **
14114044 AAAATACCCTTGGT-TTGT
63 AAAATACCCTTGATAGGGT
** *
14114062 AAAATTACCAAAATACCCCTGATTTGTGAAATTACCAAAATACCCCTATAGGATAGAATTACCGA
1 AAAATTACTGAAATACCCCTG-TTTGTGAAATTACCAAAATACCCCTATAGGATAGAATTACCAA
*
14114127 AATACCATT-ATAGGGT
65 AATACCCTTGATAGGGT
* * * * * *
14114143 AGAATTACTGAAATACCCCTG-TAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCA
1 AAAATTACTGAAATACCCCTGTTTGTG-A-AATTACCAAAATACCCCTATAGGATAGAATTACCA
* *
14114207 AGATACCCTTG-TGGGGT
64 AAATACCCTTGATAGGGT
14114224 AAAATTAC
1 AAAATTAC
14114232 CATTTTTCCC
Statistics
Matches: 138, Mismatches: 25, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
79 5 0.04
80 5 0.04
81 128 0.93
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.27
Consensus pattern (81 bp):
AAAATTACTGAAATACCCCTGTTTGTGAAATTACCAAAATACCCCTATAGGATAGAATTACCAAA
ATACCCTTGATAGGGT
Found at i:14117857 original size:27 final size:29
Alignment explanation
Indices: 14117797--14117860 Score: 96
Period size: 27 Copynumber: 2.2 Consensus size: 29
14117787 AGATATGTGT
14117797 GTGTGTCTCAGCCGTATGTGACACATGACC
1 GTGTGTCTCAGCCGTATGTGA-ACATGACC
*
14117827 GTGTGTCTCAGCCG-ATGTG-ACATGGCC
1 GTGTGTCTCAGCCGTATGTGAACATGACC
14117854 GTGTGTC
1 GTGTGTC
14117861 CCCTGTAGCT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 14 0.42
29 5 0.15
30 14 0.42
ACGTcount: A:0.16, C:0.25, G:0.31, T:0.28
Consensus pattern (29 bp):
GTGTGTCTCAGCCGTATGTGAACATGACC
Found at i:14118393 original size:20 final size:18
Alignment explanation
Indices: 14118350--14118394 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
14118340 TGTTCTTTGT
* *
14118350 TTTGTGAAAGAAATCAGA
1 TTTGTGAAACAAATCAAA
14118368 TTTGTGAAACATAATCAAA
1 TTTGTGAAACA-AATCAAA
14118387 CTTTGTGA
1 -TTTGTGA
14118395 GGATTCAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 10 0.43
19 6 0.26
20 7 0.30
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (18 bp):
TTTGTGAAACAAATCAAA
Found at i:14123640 original size:20 final size:20
Alignment explanation
Indices: 14123615--14123654 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14123605 ACTTTAAAAT
14123615 CAAGTTAAAATGATTTTAAC
1 CAAGTTAAAATGATTTTAAC
14123635 CAAGTTAAAATGATTTTAAC
1 CAAGTTAAAATGATTTTAAC
14123655 AAATCAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.35
Consensus pattern (20 bp):
CAAGTTAAAATGATTTTAAC
Found at i:14127217 original size:20 final size:18
Alignment explanation
Indices: 14127192--14127228 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
14127182 ATTGCTAAGT
14127192 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
14127212 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
14127229 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:14129047 original size:50 final size:50
Alignment explanation
Indices: 14128989--14129093 Score: 194
Period size: 50 Copynumber: 2.1 Consensus size: 50
14128979 TTTTAATGTG
*
14128989 AGTA-TGTAATATTATGATTTAGCCAAAGGCATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGACATTGGCTTGTTATTAAGGT
14129038 AGTATTGTAATATTATGATTTAGCCAAAGACATTGGCTTGTTATTAAGGT
1 AGTATTGTAATATTATGATTTAGCCAAAGACATTGGCTTGTTATTAAGGT
14129088 AGTATT
1 AGTATT
14129094 AGTCATGTAA
Statistics
Matches: 54, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
49 4 0.07
50 50 0.93
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (50 bp):
AGTATTGTAATATTATGATTTAGCCAAAGACATTGGCTTGTTATTAAGGT
Found at i:14143959 original size:35 final size:36
Alignment explanation
Indices: 14143896--14143966 Score: 135
Period size: 35 Copynumber: 2.0 Consensus size: 36
14143886 CAATGATATG
14143896 CAATCTTAGATATGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
14143932 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
1 CAATCTTAGATATGATATGCAATCTTAGATATGATA
14143967 TGCAATCCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
35 19 0.54
36 16 0.46
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.37
Consensus pattern (36 bp):
CAATCTTAGATATGATATGCAATCTTAGATATGATA
Found at i:14143985 original size:17 final size:19
Alignment explanation
Indices: 14143888--14143978 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
14143878 ATAATCTTCA
14143888 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14143907 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14143926 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14143943 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
14143961 ATGATATGCAATCCTAGA
1 ATGATATGCAATCTTAGA
14143979 AGATATGATT
Statistics
Matches: 68, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
17 16 0.24
18 16 0.24
19 36 0.53
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:14144284 original size:17 final size:17
Alignment explanation
Indices: 14144260--14144294 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14144250 TGTTTCTCAG
*
14144260 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
14144278 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
14144295 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:14148730 original size:75 final size:75
Alignment explanation
Indices: 14148607--14148745 Score: 269
Period size: 75 Copynumber: 1.9 Consensus size: 75
14148597 TCTTGTTACT
*
14148607 CTAGAGCCTAGGAGTAATAGGATTTCATTTGTGAAATGGGTTTACAATCATCTATTATTTTTTAT
1 CTAGAGCCTAGGAGTAATAGGATTTCATTTGTGAAATGGGCTTACAATCATCTATTATTTTTTAT
14148672 TAACAAAAAA
66 TAACAAAAAA
14148682 CTAGAGCCTAGGAGTAATAGGATTTCATTTGTGAAATGGGCTTACAATCATCTATTATTTTTTA
1 CTAGAGCCTAGGAGTAATAGGATTTCATTTGTGAAATGGGCTTACAATCATCTATTATTTTTTA
14148746 ATAAAGCATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 63 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (75 bp):
CTAGAGCCTAGGAGTAATAGGATTTCATTTGTGAAATGGGCTTACAATCATCTATTATTTTTTAT
TAACAAAAAA
Found at i:14153556 original size:89 final size:87
Alignment explanation
Indices: 14153428--14153589 Score: 207
Period size: 89 Copynumber: 1.8 Consensus size: 87
14153418 ATTCGACGGA
* ** * *
14153428 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATTGAAGTAGATCCAAGATG
1 GAGCAGATCAAAGACATAGCAGATCTAACCTTCACATG-TTT-ACACTGAAGCAGATCCAAGATG
14153493 ATTTGGCATCCTTGCGTTTACAAG
64 ATTTGGCATCCTTGCGTTTACAAG
* ** * * *
14153517 GAGCAGATCAAAGACATAGCAGATTTGGCTTTCACATGTTTACGCTGAAGCAGATCTAAGATGAT
1 GAGCAGATCAAAGACATAGCAGATCTAACCTTCACATGTTTACACTGAAGCAGATCCAAGATGAT
14153582 TTGGCATC
66 TTGGCATC
14153590 TCTGTACTGT
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
87 28 0.45
88 3 0.05
89 31 0.50
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28
Consensus pattern (87 bp):
GAGCAGATCAAAGACATAGCAGATCTAACCTTCACATGTTTACACTGAAGCAGATCCAAGATGAT
TTGGCATCCTTGCGTTTACAAG
Found at i:14153701 original size:219 final size:220
Alignment explanation
Indices: 14153349--14153899 Score: 969
Period size: 219 Copynumber: 2.5 Consensus size: 220
14153339 CACCGAAGTG
* ** *
14153349 GATCCAAGATGATTTAACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
1 GATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
* *
14153414 CCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATTGAA
66 CCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAA
* *
14153479 GTAGATCCAAGATGATTTGGCATCCTTGCGTTTACAAGGAGCAGATCAAAGACATAGCAGATTTG
131 GTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGAAGCAGATCAAAGACATAGCAGATTTG
*
14153544 GCTTTCACATGTTTACGCTGAAGCA
196 GCTTTCACATGTTTACGCTAAAGCA
*
14153569 GATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAA-AGATTTGGCATTT
1 GATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
14153633 CCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAA
66 CCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAA
14153698 GTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGAAGCAGATCAAAGACATAGCAGATTTG
131 GTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGAAGCAGATCAAAGACATAGCAGATTTG
*
14153763 GCTTTCACGTGTTTACGCTAAAGCA
196 GCTTTCACATGTTTACGCTAAAGCA
*
14153788 AATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
1 GATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
* *
14153853 CCATATTCTACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTC
66 CCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAACCTTC
14153900 ATTGAAGCAG
Statistics
Matches: 315, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
219 211 0.67
220 104 0.33
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.26
Consensus pattern (220 bp):
GATCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGCATCT
CCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAA
GTAGATCCAAGATGATTTGGCATCCTTGCATTTACAAGAAGCAGATCAAAGACATAGCAGATTTG
GCTTTCACATGTTTACGCTAAAGCA
Found at i:14153975 original size:78 final size:78
Alignment explanation
Indices: 14153841--14154291 Score: 672
Period size: 78 Copynumber: 5.8 Consensus size: 78
14153831 CGAAGAAACA
* ** *
14153841 GATTTGGCATCTCCATATTCTACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
14153906 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
14153919 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGAT-TGGACCTTCATTGA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
14153983 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
14153997 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
14154062 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
14154075 GATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
14154140 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * * *
14154153 GATTTGGCATCTCTGTATTAGACAGGGAGCAGATCAAAGACATAACAGAT-TGGACCTTTATTAA
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTGA
*
14154217 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
14154231 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCAT
14154292 GTGTTTACAT
Statistics
Matches: 336, Mismatches: 33, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
77 2 0.01
78 332 0.99
79 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTATATTAGACGGGGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:14154131 original size:156 final size:156
Alignment explanation
Indices: 14153841--14154291 Score: 746
Period size: 156 Copynumber: 2.9 Consensus size: 156
14153831 CGAAGAAACA
*
14153841 GATTTGGCATCTCCATATTCTACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
14153906 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGAT-T
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
14153970 GGACCTTCATTGAAGCAGATCCAAGAT
131 -GACCTTCATTGAAGCAGATCCAAGAT
14153997 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
* *
14154062 GCAGATCCAAGATGATTTGGCATCTCTATATTAGATGGGGAGCAGATCGAAGACACAGCAGATCT
66 GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
14154127 GACCTTCATTGAAGCAGATCCAAGAT
131 GACCTTCATTGAAGCAGATCCAAGAT
** * * * *
14154153 GATTTGGCATCTCTGTATTAGACAGG-GAGCAGATCAAAGACATAACAGAT-TGGACCTTTATTA
1 GATTTGGCATCTCCATATTCGAC-GGAGAGCAGATCAAAGACATAGCAGATCT-GACCTTCATTG
* * *
14154216 AAGTAGATCCAAGATGATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGAT
64 AAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGAT
14154281 CTGACCTTCAT
129 CTGACCTTCAT
14154292 GTGTTTACAT
Statistics
Matches: 278, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
155 1 0.00
156 274 0.99
157 3 0.01
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.25
Consensus pattern (156 bp):
GATTTGGCATCTCCATATTCGACGGAGAGCAGATCAAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT
GACCTTCATTGAAGCAGATCCAAGAT
Found at i:14154386 original size:44 final size:45
Alignment explanation
Indices: 14154231--14154454 Score: 217
Period size: 44 Copynumber: 5.0 Consensus size: 45
14154221 GATCCAAGAT
* * *
14154231 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
14154278 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCGTCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * *
14154323 GATTTGGCATCTCTG-ATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
14154366 GATTTGGCGTCTCTGTATTAGAC-GGGAGCAGATCGAAGATAACA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
14154410 GATTTGGCGTCTCTGTATTAGACGGAGAGCAGATCAAAGATAACA
1 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
14154455 AATATCGCCT
Statistics
Matches: 144, Mismatches: 24, Indels: 20
0.77 0.13 0.11
Matches are distributed among these distances:
42 1 0.01
43 35 0.24
44 45 0.31
45 32 0.22
46 4 0.03
47 22 0.15
48 4 0.03
49 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (45 bp):
GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:14154855 original size:19 final size:19
Alignment explanation
Indices: 14154807--14154861 Score: 103
Period size: 18 Copynumber: 2.9 Consensus size: 19
14154797 ATAATCTTCA
14154807 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14154826 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
14154844 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
14154862 AGATATGATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
18 18 0.51
19 17 0.49
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:14154887 original size:22 final size:22
Alignment explanation
Indices: 14154807--14154884 Score: 80
Period size: 18 Copynumber: 3.8 Consensus size: 22
14154797 ATAATCTTCA
14154807 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
14154826 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
14154844 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
14154866 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
14154885 GATTTAATTT
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
18 18 0.35
19 14 0.27
22 8 0.15
23 12 0.23
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:14155175 original size:17 final size:17
Alignment explanation
Indices: 14155149--14155185 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
14155139 CATGTTTCCC
*
14155149 TAATTTTTTTATATATTT
1 TAATTTTTTAATA-ATTT
14155167 TAATTTTTTAATAATTT
1 TAATTTTTTAATAATTT
14155184 TA
1 TA
14155186 GTATCATATC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TAATTTTTTAATAATTT
Found at i:14166776 original size:43 final size:44
Alignment explanation
Indices: 14166721--14166846 Score: 147
Period size: 41 Copynumber: 3.0 Consensus size: 44
14166711 ATTCCATACA
14166721 ATGCCAAC-ATCCCAGACGTGGTCTTACATGTAATCACATATCG
1 ATGCCAACTATCCCAGACGTGGTCTTACATGTAATCACATATCG
* *
14166764 ATGCC-ACTATCCCAGATAG-GGTCTTACATG-AATCAAATA-CG
1 ATGCCAACTATCCCAGA-CGTGGTCTTACATGTAATCACATATCG
* * * *
14166805 ATGCCGA-TGTCCCAGACATGGTCTTACACGTAATCACATATC
1 ATGCCAACTATCCCAGACGTGGTCTTACATGTAATCACATATC
14166847 ATTAATCCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 12
0.79 0.08 0.13
Matches are distributed among these distances:
41 25 0.36
42 19 0.27
43 25 0.36
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACTATCCCAGACGTGGTCTTACATGTAATCACATATCG
Found at i:14172318 original size:20 final size:21
Alignment explanation
Indices: 14172278--14172318 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
14172268 CGAGACTAAA
* *
14172278 TCAATAACTTAGGAAACTTTT
1 TCAATAACTTAGAAAAATTTT
14172299 TCAA-AACTTAGAAAAATTTT
1 TCAATAACTTAGAAAAATTTT
14172319 CCATAAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.44, C:0.12, G:0.07, T:0.37
Consensus pattern (21 bp):
TCAATAACTTAGAAAAATTTT
Found at i:14174430 original size:21 final size:20
Alignment explanation
Indices: 14174402--14174441 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
14174392 CAAAACTTAT
14174402 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
14174422 ATAATCTATCATCAATCATT
1 ATAA-CTATCATCAAACATT
14174442 AAAGCACACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.42, C:0.23, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:14178432 original size:46 final size:47
Alignment explanation
Indices: 14178338--14178496 Score: 149
Period size: 46 Copynumber: 3.2 Consensus size: 47
14178328 CATAGTAAAA
* ** * *
14178338 CTATGGTCTTGCACATAGTCACATATCACACACTGAAGCCATAGCCCAG
1 CTATGGTCTTACACGGAATCACATAT--CACACTGATGCCATAGCCCAG
* *
14178387 CCATGGTCTTACACGG-ATCACATATCACACTGATGCCATATCCCAG
1 CTATGGTCTTACACGGAATCACATATCACACTGATGCCATAGCCCAG
* * *
14178433 ATATGGTCTTATACGGAAGCACATAATCACATATCTCTGATGCCATAGCCCAG
1 CTATGGTCTTACACGGAATCACAT-ATCAC--A---CTGATGCCATAGCCCAG
14178486 CTATGGTCTTA
1 CTATGGTCTTA
14178497 TATGGAAATC
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
46 32 0.36
47 6 0.07
48 13 0.14
49 12 0.13
50 1 0.01
53 26 0.29
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (47 bp):
CTATGGTCTTACACGGAATCACATATCACACTGATGCCATAGCCCAG
Found at i:14178568 original size:31 final size:31
Alignment explanation
Indices: 14178533--14178626 Score: 154
Period size: 31 Copynumber: 3.0 Consensus size: 31
14178523 TTGTAGCCGA
14178533 AGCTACCACTTTTTACTGATCAGGTAGTCGG
1 AGCTACCACTTTTTACTGATCAGGTAGTCGG
14178564 AGCTACCA-TTTTTCACTGATCAGGTAGTCGG
1 AGCTACCACTTTTT-ACTGATCAGGTAGTCGG
* *
14178595 AGCTACCACTTTTCACTGATCAGGTAGCCGG
1 AGCTACCACTTTTTACTGATCAGGTAGTCGG
14178626 A
1 A
14178627 ACATTCATAA
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
30 5 0.08
31 50 0.85
32 4 0.07
ACGTcount: A:0.23, C:0.24, G:0.22, T:0.30
Consensus pattern (31 bp):
AGCTACCACTTTTTACTGATCAGGTAGTCGG
Found at i:14182779 original size:26 final size:27
Alignment explanation
Indices: 14182736--14182793 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
14182726 GAAGTACTGA
* *
14182736 ACTGGTGACTATGCCACATTTATTATT
1 ACTGGTGACTATGCCACACTTACTATT
* *
14182763 ACTGGTGGCT-TGCCACACTTACTGTT
1 ACTGGTGACTATGCCACACTTACTATT
14182789 ACTGG
1 ACTGG
14182794 CAGCTACGCT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 18 0.67
27 9 0.33
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (27 bp):
ACTGGTGACTATGCCACACTTACTATT
Found at i:14189292 original size:20 final size:19
Alignment explanation
Indices: 14189269--14189327 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 19
14189259 AAGTGTAGGC
14189269 AGAGGCACCAATGTGCAATT
1 AGAGGCACCAA-GTGCAATT
*
14189289 AGAGGCACCGAAGTGCAAAT
1 AGAGGCACC-AAGTGCAATT
*
14189309 AGGGGCACCAAAGTGCAAT
1 AGAGGCACC-AAGTGCAAT
14189328 CTTGTACAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 32 0.94
21 2 0.06
ACGTcount: A:0.37, C:0.20, G:0.29, T:0.14
Consensus pattern (19 bp):
AGAGGCACCAAGTGCAATT
Found at i:14189316 original size:40 final size:40
Alignment explanation
Indices: 14189248--14189327 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
14189238 AGATGCATAA
* ** *
14189248 TAGAGGCACCGAAGTGTAGGCAGAGGCACCAATGTGCAAT
1 TAGAGGCACCGAAGTGCAAACAGAGGCACCAAAGTGCAAT
* *
14189288 TAGAGGCACCGAAGTGCAAATAGGGGCACCAAAGTGCAAT
1 TAGAGGCACCGAAGTGCAAACAGAGGCACCAAAGTGCAAT
14189328 CTTGTACAAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.20, G:0.31, T:0.14
Consensus pattern (40 bp):
TAGAGGCACCGAAGTGCAAACAGAGGCACCAAAGTGCAAT
Found at i:14195656 original size:35 final size:35
Alignment explanation
Indices: 14195608--14195766 Score: 174
Period size: 35 Copynumber: 4.5 Consensus size: 35
14195598 GTATGTACAT
14195608 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * * *
14195643 ATGTGATGTTATATTAAACTTGAATATTTGACTAC
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * * ** * *
14195678 ATGTGATGTTTTATTGAGCTTGTATATTCAGTCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
* * *
14195713 ATATGATGATATATTGTACTTGTATATTTGGCCAT
1 ATGTGATGATATATTGAACTTGTATATTTGGCCAC
*
14195748 ATGTGATGATATAATGAAC
1 ATGTGATGATATATTGAAC
14195767 CTTGAGTATT
Statistics
Matches: 98, Mismatches: 26, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 98 1.00
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (35 bp):
ATGTGATGATATATTGAACTTGTATATTTGGCCAC
Found at i:14198077 original size:30 final size:29
Alignment explanation
Indices: 14198043--14198101 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
14198033 ATTTAATACG
14198043 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTT-CCCCTA
* * *
14198073 AACTTTTGCATAATTACACTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTCCCCTA
14198102 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTCCCCTA
Found at i:14224281 original size:39 final size:40
Alignment explanation
Indices: 14224180--14224364 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
14224170 TCGAATGATG
* * *
14224180 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
*
14224219 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
14224260 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
14224299 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * * *
14224338 AACTGGGCTATGTCCCAAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
14224365 AACGAGTGCT
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 36 0.29
40 78 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:14224316 original size:79 final size:80
Alignment explanation
Indices: 14224180--14224336 Score: 212
Period size: 79 Copynumber: 2.0 Consensus size: 80
14224170 TCGAATGATG
* *
14224180 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
14224245 GTGCGAGTTACTAAT
66 GTGCGAGTTACTAAT
* * * **
14224260 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
14224322 TTGTGCGAGTTACTA
64 TTGTGCGAGTTACTA
14224337 TAACTGGGCT
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
78 1 0.01
79 50 0.74
80 17 0.25
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGTTACTAAT
Found at i:14224381 original size:79 final size:78
Alignment explanation
Indices: 14224233--14224396 Score: 188
Period size: 79 Copynumber: 2.1 Consensus size: 78
14224223 GGACTAAGAT
* * **
14224233 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
*
14224298 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
* * * *
14224312 CCGAAGGCATTTGTGCGAGTTACT-ATAACTGGGCTATGTCCCAAAGGCATTTGAACGAG-TGCT
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTACT
* *
14224375 ATATCCGGTTAAATT
64 AAATCCGGTTAAATC
14224390 CCGAAGG
1 CCGAAGG
14224397 TACGTGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
78 16 0.22
79 40 0.56
80 16 0.22
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAA
ATCCGGTTAAATC
Found at i:14233290 original size:15 final size:13
Alignment explanation
Indices: 14233264--14233324 Score: 63
Period size: 13 Copynumber: 4.6 Consensus size: 13
14233254 CTTATTCTTC
14233264 TTATTATTATTTT
1 TTATTATTATTTT
14233277 TTATGTATTAATTTT
1 TTAT-TATT-ATTTT
14233292 TTA-TATTATTCTT
1 TTATTATTATT-TT
* *
14233305 TTTTTCTTA-TTT
1 TTATTATTATTTT
14233317 TTATTATT
1 TTATTATT
14233325 TTAGCACTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
12 11 0.28
13 13 0.32
14 8 0.20
15 8 0.20
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (13 bp):
TTATTATTATTTT
Found at i:14233304 original size:48 final size:48
Alignment explanation
Indices: 14233234--14233327 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
14233224 CCTTTTCTTT
* *
14233234 TATTTATTTATTATATTCTTCTTATTCTTCTTATTATTATT-TTTTATG
1 TATTAATTTATTATATTATTCTT-TTCTTCTTATTATTATTATTTTATG
* * *
14233282 TATTAATTTTTTATATTATTCTTTTTTTCTTATTTTTATTATTTTA
1 TATTAATTTATTATATTATTCTTTTCTTCTTATTATTATTATTTTA
14233328 GCACTGTTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 15 0.38
48 25 0.62
ACGTcount: A:0.21, C:0.06, G:0.01, T:0.71
Consensus pattern (48 bp):
TATTAATTTATTATATTATTCTTTTCTTCTTATTATTATTATTTTATG
Found at i:14234927 original size:24 final size:25
Alignment explanation
Indices: 14234900--14234953 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
14234890 TTTTTCTTTT
*
14234900 ATTTTTATTTTTT-AGACTA-ATTTC
1 ATTTTTATTTTTTGA-ACTATATTTA
14234924 ATTTTTATTTTTTGAACTATATTTA
1 ATTTTTATTTTTTGAACTATATTTA
14234949 ATTTT
1 ATTTT
14234954 ATGGTTGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 17 0.63
25 10 0.37
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (25 bp):
ATTTTTATTTTTTGAACTATATTTA
Found at i:14234935 original size:25 final size:24
Alignment explanation
Indices: 14234900--14234953 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
14234890 TTTTTCTTTT
* *
14234900 ATTTTTATTTTTTAGACTA-ATTTC
1 ATTTTTATTTTTGA-ACTATATTTA
14234924 ATTTTTATTTTTTGAACTATATTTA
1 ATTTTTA-TTTTTGAACTATATTTA
14234949 ATTTT
1 ATTTT
14234954 ATGGTTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.65
Consensus pattern (24 bp):
ATTTTTATTTTTGAACTATATTTA
Found at i:14245765 original size:46 final size:45
Alignment explanation
Indices: 14245620--14245788 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 45
14245610 TTATTATGAG
* * * * *
14245620 CTAGCGTAAGACATATTTGGGACATGCATCGGCCA-C-AGTATGAGAA
1 CTAGTGTAAGACATGTCTGGGACATGCATCGG-CATCGAG-ATAAG-T
* * * *
14245666 CCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAGATGAGT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGATAAGT
*
14245713 GCTAGTGTAAGACGTGTCTGGGACATGCATCGGCATCGAGACGTAAGT
1 -CTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGA--TAAGT
14245761 -TAGTGTAAGACATGTCTGGGACATGCAT
1 CTAGTGTAAGACATGTCTGGGACATGCAT
14245789 TGGCTACGAG
Statistics
Matches: 105, Mismatches: 11, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
46 50 0.48
47 27 0.26
48 26 0.25
49 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATAAGT
Found at i:14248624 original size:46 final size:46
Alignment explanation
Indices: 14248557--14248723 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 46
14248547 GCCCATCAGC
*
14248557 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
* * * *
14248603 GAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTT-ACAT-C-TCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCATAAGT
* * *
14248650 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
14248696 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
14248724 ATGCTCAACC
Statistics
Matches: 99, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 53 0.54
47 26 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCATAAGT
Found at i:14248668 original size:93 final size:93
Alignment explanation
Indices: 14248556--14248727 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
14248546 CGCCCATCAG
* * *
14248556 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
14248621 ACGAGTTTGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
14248649 CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
14248714 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
14248728 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:14252978 original size:39 final size:39
Alignment explanation
Indices: 14252854--14252958 Score: 192
Period size: 39 Copynumber: 2.7 Consensus size: 39
14252844 GAGATTGGAA
14252854 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
14252893 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
1 ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
* *
14252932 ATATCCGGACTTGAGGTCCGCAGGCTA
1 ATATCCGGACATGAGATCCGCAGGCTA
14252959 CGTGCTGGGA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (39 bp):
ATATCCGGACATGAGATCCGCAGGCTATATGCTAGAAAT
Found at i:14254483 original size:53 final size:53
Alignment explanation
Indices: 14254286--14254489 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 53
14254276 TAGGGTTTAC
* * * *
14254286 GGATACCAAGTAAGGCCATG-CTAAGACATGGCATTCGTAAGTTCATAAGGCAA
1 GGATACCATGTAAGACCATGTC-AAGACATGGCAATGGTAAGTTCATAAGGCAA
* * ** * *
14254339 GGATATCATGTAAGACCATGTCAAGACATGGCATTGACAAACTACTATAAGGCAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATG-GTAAGTTC-ATAAGGCAA
* * * * * * *
14254394 AGATCCCATGTAATACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGACAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAA
* * *
14254447 GGATACCACGTAAGACCATGTCAAGACAGGGAAATGGTAAGTT
1 GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
14254490 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 30, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
53 72 0.61
54 8 0.07
55 38 0.32
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.21
Consensus pattern (53 bp):
GGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAA
Found at i:14255835 original size:56 final size:56
Alignment explanation
Indices: 14255749--14255868 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
14255739 ACAAGGGATG
14255749 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
14255805 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
14255861 ATGGGCAA
1 ATGGGCAA
14255869 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:14257380 original size:47 final size:47
Alignment explanation
Indices: 14257326--14257971 Score: 917
Period size: 47 Copynumber: 13.6 Consensus size: 47
14257316 TATTTGAATA
* *
14257326 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTAATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257373 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257422 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
14257471 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257518 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
14257567 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
14257614 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257663 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257710 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
14257757 AATGTGAACATGTGTAT-T-TGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-A-GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
14257804 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGACCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257851 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
14257898 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
14257945 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
14257972 TCCCGAAGGG
Statistics
Matches: 561, Mismatches: 26, Indels: 24
0.92 0.04 0.04
Matches are distributed among these distances:
45 4 0.01
46 2 0.00
47 364 0.65
48 1 0.00
49 189 0.34
50 1 0.00
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:14257753 original size:94 final size:94
Alignment explanation
Indices: 14257326--14257971 Score: 917
Period size: 96 Copynumber: 6.8 Consensus size: 94
14257316 TATTTGAATA
* *
14257326 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTAATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
* *
14257391 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257422 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
* * *
14257487 TATGTGATAAGGCCTAATGGCCGATGTGATA
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257518 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
14257583 TATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
*
14257614 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACA-TGTGT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTAT
*
14257678 ATGTGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
14257710 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGTGTAT
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-A-GTGTAT
14257774 -T-TGTGATAAGGCCGAATGGCCAATGTGATG
63 ATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
14257804 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGACCAATGTGATGAATGTGAACA-TGCATA
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA-AGTGTATA
*
14257867 TATGAGATAAGGCCGAATGGCCAATGTGATG
64 TATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
14257898 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGGAAGTGTATAAA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
14257963 TGTGATAAG
66 TGTGATAAG
14257972 TCCCGAAGGG
Statistics
Matches: 512, Mismatches: 28, Indels: 22
0.91 0.05 0.04
Matches are distributed among these distances:
92 4 0.01
93 3 0.01
94 214 0.42
95 1 0.00
96 243 0.47
97 2 0.00
98 45 0.09
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:14274473 original size:24 final size:23
Alignment explanation
Indices: 14274429--14274473 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 23
14274419 TTTCTTTTGT
14274429 TTCTTTTTCTAATTCTTTTTCTC
1 TTCTTTTTCTAATTCTTTTTCTC
14274452 TTCTTTCTTC-AATTTCTTTTTC
1 TTCTTT-TTCTAA-TTCTTTTTC
14274474 ACTCTCAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.09, C:0.22, G:0.00, T:0.69
Consensus pattern (23 bp):
TTCTTTTTCTAATTCTTTTTCTC
Found at i:14289740 original size:21 final size:22
Alignment explanation
Indices: 14289714--14289754 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
14289704 TTAATCATAC
14289714 AATTT-ATGCTTT-ATTAACAAT
1 AATTTAAT-CTTTAATTAACAAT
14289735 AATTTAATCTTTAATTAACA
1 AATTTAATCTTTAATTAACA
14289755 TTGCACTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.46
Consensus pattern (22 bp):
AATTTAATCTTTAATTAACAAT
Found at i:14297083 original size:40 final size:40
Alignment explanation
Indices: 14296935--14297146 Score: 232
Period size: 40 Copynumber: 5.3 Consensus size: 40
14296925 CATTTGAATG
* * *
14296935 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
* * * * *
14296975 TTATCCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
*
14297015 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
*
14297055 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATT
* * * * ** *
14297095 ATACCCGGGTTAAAACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
14297135 ATATCC-GGCTAA
1 ATATCCGGGCTAA
14297147 ATTCCGAAGA
Statistics
Matches: 153, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 7 0.05
40 143 0.93
41 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATT
Found at i:14305161 original size:40 final size:40
Alignment explanation
Indices: 14305106--14305316 Score: 230
Period size: 40 Copynumber: 5.3 Consensus size: 40
14305096 ATTTGAATGA
*
14305106 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
14305146 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
14305186 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * *
14305226 TATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
14305266 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
14305306 TATCC-GGCTAA
1 TATCCGGGCTAA
14305317 ATTCCGAAGA
Statistics
Matches: 154, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 7 0.05
40 144 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:14310184 original size:46 final size:47
Alignment explanation
Indices: 14310049--14310219 Score: 172
Period size: 46 Copynumber: 3.7 Consensus size: 47
14310039 GTTATTATGA
* * * * *
14310049 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-ATTA-TGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACTAAGT
* * * * *
14310095 GCCAGTTTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACT-AGT
1 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACTAAGT
*
14310143 GCTAGTGTAAGACGTGTCTGGGACATGCATCGGCCTCGAGACATAAGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC-TAAGT
14310191 --TAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
14310220 AGCTATGAGA
Statistics
Matches: 103, Mismatches: 16, Indels: 12
0.79 0.12 0.09
Matches are distributed among these distances:
46 52 0.50
47 26 0.25
48 23 0.22
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACTAAGT
Found at i:14320477 original size:35 final size:35
Alignment explanation
Indices: 14320436--14320504 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
14320426 ATAGTGTTCT
14320436 AATTTTTTGGTACATAATTAAATA-TTTTTATTTTG
1 AATTTTTT-GTACATAATTAAATATTTTTTATTTTG
* **
14320471 AATTTTTTTTAGTTAATTAAATATTTTTTATTTT
1 AATTTTTTGTACATAATTAAATATTTTTTATTTT
14320505 TTATTTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 12 0.40
35 18 0.60
ACGTcount: A:0.30, C:0.01, G:0.06, T:0.62
Consensus pattern (35 bp):
AATTTTTTGTACATAATTAAATATTTTTTATTTTG
Found at i:14321886 original size:17 final size:16
Alignment explanation
Indices: 14321860--14321891 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
14321850 AACAAAACCC
14321860 AAATATAAAATCATTG
1 AAATATAAAATCATTG
14321876 AAATAATAAAATCATT
1 AAAT-ATAAAATCATT
14321892 CGTGATCGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (16 bp):
AAATATAAAATCATTG
Found at i:14322262 original size:14 final size:15
Alignment explanation
Indices: 14322243--14322272 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14322233 GTTTATTATA
14322243 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
14322257 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
14322272 T
1 T
14322273 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:14324021 original size:43 final size:42
Alignment explanation
Indices: 14323933--14324083 Score: 180
Period size: 43 Copynumber: 3.5 Consensus size: 42
14323923 AATGTGATAT
* * *
14323933 TCGGGCCTC-GGCCTAGCAAGCTTTAA-GCTGGTGAATAATATTA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAAT-A-A-TA
14323976 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAGATAATA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGA-ATAATA
* *
14324019 TCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAATGATA
1 TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTG-AATAATA
**
14324062 TCGGGCTTCAAGCCTAGCAGGC
1 TCGGGCTTCGGGCCTAGCAGGC
14324084 GAAATACCGG
Statistics
Matches: 97, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
43 69 0.71
44 17 0.18
45 9 0.09
46 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (42 bp):
TCGGGCTTCGGGCCTAGCAGGCTATAATGCTGGTGAATAATA
Found at i:14326005 original size:26 final size:26
Alignment explanation
Indices: 14325976--14326027 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14325966 ACACCTATAT
14325976 CGCAGCGAAGCTGCCAGTAACAGTAA
1 CGCAGCGAAGCTGCCAGTAACAGTAA
* *
14326002 CGCAGCGTAGCTGCCAGTAGCAGTAA
1 CGCAGCGAAGCTGCCAGTAACAGTAA
14326028 GTGTGGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.29, T:0.13
Consensus pattern (26 bp):
CGCAGCGAAGCTGCCAGTAACAGTAA
Found at i:14334031 original size:26 final size:26
Alignment explanation
Indices: 14334001--14334052 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14333991 CACCTACATC
14334001 GCAGCGAAGCTACCAGTAACAGTAAG
1 GCAGCGAAGCTACCAGTAACAGTAAG
* *
14334027 GCAGCGTAGCTACCAGTAGCAGTAAG
1 GCAGCGAAGCTACCAGTAACAGTAAG
14334053 TGTGGCAAGC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.23, G:0.29, T:0.13
Consensus pattern (26 bp):
GCAGCGAAGCTACCAGTAACAGTAAG
Found at i:14341136 original size:28 final size:28
Alignment explanation
Indices: 14341104--14341177 Score: 105
Period size: 28 Copynumber: 2.6 Consensus size: 28
14341094 AGTTTGCTAA
14341104 GGACTATCTTATGC-GAAAAGTCCACCAC
1 GGACTATCTTATGCGGAAAA-TCCACCAC
*
14341132 GGACTATCTTATGCGGAAAATCCGCCAC
1 GGACTATCTTATGCGGAAAATCCACCAC
* *
14341160 GAACTATCTTATGTGGAA
1 GGACTATCTTATGCGGAA
14341178 TGTCTGCTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
28 37 0.88
29 5 0.12
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.24
Consensus pattern (28 bp):
GGACTATCTTATGCGGAAAATCCACCAC
Found at i:14342657 original size:19 final size:20
Alignment explanation
Indices: 14342633--14342670 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
14342623 GGTACCACCA
14342633 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
14342652 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
14342671 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:14343011 original size:93 final size:93
Alignment explanation
Indices: 14342900--14343070 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
14342890 GCCCCTAAGT
* *
14342900 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
14342965 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * * *
14342993 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
14343058 CGAGTTCGGATGC
66 CGAGTTCGGATGC
14343071 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:14343067 original size:46 final size:46
Alignment explanation
Indices: 14342895--14343067 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
14342885 AACCCGCCCC
* * * * *
14342895 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * *
14342941 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
14342989 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
14343034 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14343068 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:14343525 original size:30 final size:30
Alignment explanation
Indices: 14343491--14343550 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14343481 ATTTAATACG
14343491 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
14343521 AACTTTTGTATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
14343551 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.23, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:14346607 original size:88 final size:88
Alignment explanation
Indices: 14346427--14346609 Score: 262
Period size: 87 Copynumber: 2.1 Consensus size: 88
14346417 CCTGCATCAT
* *
14346427 CTCATTATCTTTTGTCGATCGAATAACAGAAAATGATGCACTGCTGCAAATCTTTTTCTGCATTT
1 CTCATTATCTTTTGTCGATCGAATAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACATTT
* * *
14346492 TAACCTCTCACTTAATAAGAGTT
66 AAACCTCCCACTTAATAAGAGTA
* * *
14346515 CTCATTGTC-TTTGTTGATCGAATAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACGTTT
1 CTCATTATCTTTTGTCGATCGAATAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACATTT
14346579 GAAACCTCCCACTTAATAAGA-TAA
66 -AAACCTCCCACTTAATAAGAGT-A
14346603 CTCATTA
1 CTCATTA
14346610 CCTCGAAATG
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
87 52 0.62
88 32 0.38
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (88 bp):
CTCATTATCTTTTGTCGATCGAATAACAGAAAAAGATGCACTGCTGCAAATCTTTTTCTACATTT
AAACCTCCCACTTAATAAGAGTA
Found at i:14349063 original size:3 final size:3
Alignment explanation
Indices: 14349057--14349096 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
14349047 ATAATAAAAT
14349057 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
14349097 TCGAAACATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:14357956 original size:39 final size:39
Alignment explanation
Indices: 14357827--14357958 Score: 183
Period size: 39 Copynumber: 3.4 Consensus size: 39
14357817 GCATGATATT
* * * *
14357827 TAGAAACATATCTGGACTTGAGGTCTGTAGGCTATGTGC
1 TAGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
14357866 TGGAAACATATCAGGACTTGAGGTCCGCAGGCTACGTGC
1 TAGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* *
14357905 TGGAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TAGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
*
14357944 TAGAAATATATCCGG
1 TAGAAACATATCCGG
14357959 GCCTAAAGAC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 85 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
TAGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:14359802 original size:27 final size:27
Alignment explanation
Indices: 14359772--14359948 Score: 142
Period size: 27 Copynumber: 6.5 Consensus size: 27
14359762 ATATTGAGCC
* * *
14359772 CGCACACTCAGTGCTATATAATCATCT
1 CGCACACTTAGTGCCACATAATCATCT
* **
14359799 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCATCT
* * *
14359826 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCCACATAATCA-TCT
* **
14359854 CGCACTCTTAGTGCCACATGGTCAAT-T
1 CGCACACTTAGTGCCACATAATC-ATCT
* *
14359881 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCATCT
* * **
14359908 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACATAATCATCT
*
14359935 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
14359949 TGTACAATTT
Statistics
Matches: 123, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 4 0.03
27 95 0.77
28 23 0.19
29 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCATCT
Found at i:14359911 original size:82 final size:81
Alignment explanation
Indices: 14359798--14359948 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
14359788 TATAATCATC
* * * *
14359798 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCACTCTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCACCCTT
14359863 AGTGCCACATGGTCAAT
65 AGTGCCACATGGTCAAT
* **
14359880 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACCCTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACCCTT
14359944 AGTGC
65 AGTGC
14359949 TGTACAATTT
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 17 0.28
82 44 0.72
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACCCTTA
GTGCCACATGGTCAAT
Found at i:14364769 original size:16 final size:16
Alignment explanation
Indices: 14364748--14364782 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
14364738 CAATTTTCTA
*
14364748 AGATAGAAGACTGCTG
1 AGATAGAAGACTACTG
14364764 AGATAGAAGACTACTG
1 AGATAGAAGACTACTG
14364780 AGA
1 AGA
14364783 ATGGAGGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.29, T:0.17
Consensus pattern (16 bp):
AGATAGAAGACTACTG
Found at i:14368064 original size:24 final size:24
Alignment explanation
Indices: 14368037--14368084 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
14368027 GGCATTTAGG
14368037 ATTC-AGTTTTTTCTTCTTCTTTTC
1 ATTCTAGTTTTTTCTT-TTCTTTTC
**
14368061 ATTCTTTTTTTTTCTTTTCTTTTC
1 ATTCTAGTTTTTTCTTTTCTTTTC
14368085 TCTTCATCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.06, C:0.19, G:0.02, T:0.73
Consensus pattern (24 bp):
ATTCTAGTTTTTTCTTTTCTTTTC
Done.