Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 46 of 259
Found at i:14368088 original size:22 final size:24
Alignment explanation
Indices: 14368043--14368088 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
14368033 TAGGATTCAG
14368043 TTTTTTCTTCTTCTTTTCATTCTTT
1 TTTTTTCTTCTTCTTTTCA-TCTTT
14368068 TTTTTTCTT-TTCTTTTC-TCTT
1 TTTTTTCTTCTTCTTTTCATCTT
14368089 CATCTACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.19
24 8 0.38
25 9 0.43
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTTTTCTTCTTCTTTTCATCTTT
Found at i:14371636 original size:17 final size:19
Alignment explanation
Indices: 14371594--14371637 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14371584 ATGAAATTTT
*
14371594 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
14371613 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
14371631 AA-TATTA
1 AATTATTA
14371638 CTCTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:14372573 original size:20 final size:20
Alignment explanation
Indices: 14372548--14372607 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
14372538 GGATTCAGTT
*
14372548 TTTTCTTCTTCTTTTCCTTC
1 TTTTCTTCTTCTTTTCCTAC
*
14372568 TTTTCTT-TTCTATTCATCTAC
1 TTTTCTTCTTCTTTTC--CTAC
*
14372589 TTTCTTTTCTTCTTTTCCT
1 TTT-TCTTCTTCTTTTCCT
14372608 CCATAGCCGA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
19 7 0.22
20 7 0.22
21 8 0.25
22 3 0.09
23 7 0.22
ACGTcount: A:0.05, C:0.27, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTCTTCTTCTTTTCCTAC
Found at i:14372575 original size:14 final size:15
Alignment explanation
Indices: 14372550--14372607 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
14372540 ATTCAGTTTT
14372550 TTCTTCTTCTTTTCC
1 TTCTTCTTCTTTTCC
*
14372565 TTCTT-TTCTTTTCTA
1 TTCTTCTTCTTTTC-C
* *
14372580 TTCATCTAC-TTT-C
1 TTCTTCTTCTTTTCC
14372593 TT-TTCTTCTTTTCC
1 TTCTTCTTCTTTTCC
14372607 T
1 T
14372608 CCATAGCCGA
Statistics
Matches: 33, Mismatches: 6, Indels: 9
0.69 0.12 0.19
Matches are distributed among these distances:
12 4 0.12
13 5 0.15
14 10 0.30
15 12 0.36
16 2 0.06
ACGTcount: A:0.05, C:0.28, G:0.00, T:0.67
Consensus pattern (15 bp):
TTCTTCTTCTTTTCC
Found at i:14373360 original size:8 final size:8
Alignment explanation
Indices: 14373347--14373377 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
14373337 CTAGATCGGC
14373347 AAAAGCCG
1 AAAAGCCG
14373355 AAAAGCCG
1 AAAAGCCG
*
14373363 AAATGCCG
1 AAAAGCCG
14373371 AAAAGCC
1 AAAAGCC
14373378 TGTATTTTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.48, C:0.26, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:14374605 original size:11 final size:11
Alignment explanation
Indices: 14374589--14374613 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14374579 TTTAGATAAA
14374589 ACAAGACCTAT
1 ACAAGACCTAT
14374600 ACAAGACCTAT
1 ACAAGACCTAT
14374611 ACA
1 ACA
14374614 GTAATGCTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.28, G:0.08, T:0.16
Consensus pattern (11 bp):
ACAAGACCTAT
Found at i:14375374 original size:43 final size:43
Alignment explanation
Indices: 14375269--14375383 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 43
14375259 ATATCCCGGA
* * * *
14375269 TATGGTCTTACATGTTATCACATATCAATGCTAATAGCCCAGC
1 TATGGTCTTACATGTAATCACATAACGATGCCAATAGCCCAGC
*** *
14375312 TATGGTCTTACAAAAAATCAAATAACGATGCCAAT-GTCCCAGAC
1 TATGGTCTTACATGTAATCACATAACGATGCCAATAG-CCCAG-C
14375356 -ATGGTCTTACATGTAATCACATAACGAT
1 TATGGTCTTACATGTAATCACATAACGAT
14375384 AATCCTAATG
Statistics
Matches: 58, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 1 0.02
43 56 0.97
44 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.29
Consensus pattern (43 bp):
TATGGTCTTACATGTAATCACATAACGATGCCAATAGCCCAGC
Found at i:14378704 original size:60 final size:60
Alignment explanation
Indices: 14378608--14378728 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
14378598 GAGAAACCTT
14378608 TCACAAATAATCTATAATAGCCGGCTAGTCCCAGAAAAATACGGACTTCAGATACATTTC
1 TCACAAATAATCTATAATAGCCGGCTAGTCCCAGAAAAATACGGACTTCAGATACATTTC
* *
14378668 TCACAAATAATCTATAATAGCCGGCTAGTCCTAGAAAAATATGGACTTCAGATACATTTC
1 TCACAAATAATCTATAATAGCCGGCTAGTCCCAGAAAAATACGGACTTCAGATACATTTC
14378728 T
1 T
14378729 TAGAGGCTTC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.38, C:0.21, G:0.13, T:0.27
Consensus pattern (60 bp):
TCACAAATAATCTATAATAGCCGGCTAGTCCCAGAAAAATACGGACTTCAGATACATTTC
Found at i:14379541 original size:35 final size:35
Alignment explanation
Indices: 14379495--14379567 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 35
14379485 TGGATACTCG
14379495 CACACAACTTGTACTGATTCAATCTTTGTTTT-TGT
1 CACACAACTTGTACTGATTCAATCTTT-TTTTCTGT
* **
14379530 CACACAACTTGTACTGTTTTGATCTTTTTTTCTGT
1 CACACAACTTGTACTGATTCAATCTTTTTTTCTGT
14379565 CAC
1 CAC
14379568 TTTCTTATCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 4 0.12
35 30 0.88
ACGTcount: A:0.21, C:0.22, G:0.11, T:0.47
Consensus pattern (35 bp):
CACACAACTTGTACTGATTCAATCTTTTTTTCTGT
Found at i:14383310 original size:43 final size:43
Alignment explanation
Indices: 14383221--14383331 Score: 118
Period size: 43 Copynumber: 2.6 Consensus size: 43
14383211 CTTACATGTT
*
14383221 ATCAC-ATATCGATGCCACTGTCCCAGATAGGGTCTTACACAAA
1 ATCACAATA-CGATGCCAATGTCCCAGATAGGGTCTTACACAAA
* ** * **
14383264 ATCATAATGTGATGCCAATGTCCCAGACT-TGGTCTTACACGTA
1 ATCACAATACGATGCCAATGTCCCAGA-TAGGGTCTTACACAAA
*
14383307 ATCACAATACAATGCCAATGTCCCA
1 ATCACAATACGATGCCAATGTCCCA
14383332 TACATGGCCT
Statistics
Matches: 55, Mismatches: 11, Indels: 4
0.79 0.16 0.06
Matches are distributed among these distances:
43 52 0.95
44 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.25
Consensus pattern (43 bp):
ATCACAATACGATGCCAATGTCCCAGATAGGGTCTTACACAAA
Found at i:14386357 original size:28 final size:28
Alignment explanation
Indices: 14386315--14386389 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
14386305 TGGCCTCTTT
*
14386315 AGGCCCAATCTCATTCATATGGCCCATC
1 AGGCCCAATCACATTCATATGGCCCATC
* *
14386343 AGGCCTAATCACATTCATATGGCCCGTC
1 AGGCCCAATCACATTCATATGGCCCATC
*
14386371 AGGCCCAAGCACATTCATA
1 AGGCCCAATCACATTCATA
14386390 GTCATGCAAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.28, C:0.33, G:0.16, T:0.23
Consensus pattern (28 bp):
AGGCCCAATCACATTCATATGGCCCATC
Found at i:14388191 original size:43 final size:43
Alignment explanation
Indices: 14388100--14388199 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
14388090 ATATCCCGGA
* ** * *
14388100 TATGGTCTTACATATTATCACATATCGATGCCAATAGCCCAGC
1 TATGGTCTTACACAAAATCAAATAGCGATGCCAATAGCCCAGC
*
14388143 TATGGTCTTACACAAAATCAAATAGCGATGCCAAT-GTCCTAGAC
1 TATGGTCTTACACAAAATCAAATAGCGATGCCAATAG-CCCAG-C
14388187 -ATGGTCTTACACA
1 TATGGTCTTACACA
14388200 TAGTCACATA
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.02
43 47 0.96
44 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.28
Consensus pattern (43 bp):
TATGGTCTTACACAAAATCAAATAGCGATGCCAATAGCCCAGC
Found at i:14394631 original size:19 final size:19
Alignment explanation
Indices: 14394590--14394633 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
14394580 CTTTAACATG
* *
14394590 TAAATAAAACTAACTTGTA
1 TAAAAAAAACTAACTTGAA
14394609 TAAAAAAAACTAACTT-AA
1 TAAAAAAAACTAACTTGAA
14394627 CTAAAAA
1 -TAAAAA
14394634 CTATGAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.61, C:0.11, G:0.02, T:0.25
Consensus pattern (19 bp):
TAAAAAAAACTAACTTGAA
Found at i:14408554 original size:20 final size:20
Alignment explanation
Indices: 14408531--14408626 Score: 77
Period size: 20 Copynumber: 4.8 Consensus size: 20
14408521 GTGTTTATAT
14408531 GGATGAATTACTGTTAATAC
1 GGATGAATTACTGTTAATAC
* *
14408551 GGATGAATTACTTTTATTAC
1 GGATGAATTACTGTTAATAC
* ** * *
14408571 CGATGAACAACTATTTATAC
1 GGATGAATTACTGTTAATAC
* *
14408591 GGATGAACTACTAGTT-ATAT
1 GGATGAATTACT-GTTAATAC
* *
14408611 GAATGAATTACAGTTA
1 GGATGAATTACTGTTA
14408627 TACAAATAGA
Statistics
Matches: 59, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
19 3 0.05
20 54 0.92
21 2 0.03
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.35
Consensus pattern (20 bp):
GGATGAATTACTGTTAATAC
Found at i:14410315 original size:18 final size:18
Alignment explanation
Indices: 14410289--14410323 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
14410279 ATATATTAAG
14410289 CCAAGTACCCAACCCAAC
1 CCAAGTACCCAACCCAAC
*
14410307 CCAATTACCCAACCCAA
1 CCAAGTACCCAACCCAA
14410324 TCATAAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.49, G:0.03, T:0.09
Consensus pattern (18 bp):
CCAAGTACCCAACCCAAC
Found at i:14410316 original size:13 final size:13
Alignment explanation
Indices: 14410300--14410324 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14410290 CAAGTACCCA
14410300 ACCCAACCCAATT
1 ACCCAACCCAATT
14410313 ACCCAACCCAAT
1 ACCCAACCCAAT
14410325 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:14410370 original size:14 final size:14
Alignment explanation
Indices: 14410351--14410396 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
14410341 AATTTAATAA
14410351 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
*
14410365 ATAAAACTAAAAAT
1 ATAAAAATAAAAAT
14410379 A-AATAAA-AAAACAT
1 ATAA-AAATAAAA-AT
14410393 ATAA
1 ATAA
14410397 TTTTATACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 6 0.22
14 19 0.70
15 2 0.07
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:14410422 original size:9 final size:9
Alignment explanation
Indices: 14410408--14410484 Score: 59
Period size: 9 Copynumber: 8.6 Consensus size: 9
14410398 TTTATACAAA
14410408 TAATTCGAT
1 TAATTCGAT
14410417 TAATTCGAT
1 TAATTCGAT
*
14410426 TAATTC-AGG
1 TAATTCGA-T
*
14410435 TAATTCGGT
1 TAATTCGAT
* *
14410444 CAATTTGAT
1 TAATTCGAT
*
14410453 TAATTCGGT
1 TAATTCGAT
*
14410462 TAATT-TAGT
1 TAATTCGA-T
*
14410471 TAATTCGGT
1 TAATTCGAT
14410480 TAATT
1 TAATT
14410485 TTATACTTAT
Statistics
Matches: 51, Mismatches: 13, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
8 1 0.02
9 50 0.98
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (9 bp):
TAATTCGAT
Found at i:14410431 original size:18 final size:19
Alignment explanation
Indices: 14410408--14410484 Score: 81
Period size: 18 Copynumber: 4.3 Consensus size: 19
14410398 TTTATACAAA
*
14410408 TAATTCGA-TTAATTCGAT
1 TAATTCGAGTTAATTCGGT
*
14410426 TAATTC-AGGTAATTCGGT
1 TAATTCGAGTTAATTCGGT
* *
14410444 CAATTTGA-TTAATTCGGT
1 TAATTCGAGTTAATTCGGT
*
14410462 TAATT-TAGTTAATTCGGT
1 TAATTCGAGTTAATTCGGT
14410480 TAATT
1 TAATT
14410485 TTATACTTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
17 2 0.04
18 46 0.94
19 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (19 bp):
TAATTCGAGTTAATTCGGT
Found at i:14410448 original size:27 final size:27
Alignment explanation
Indices: 14410408--14410484 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
14410398 TTTATACAAA
*
14410408 TAATTCGATTAATTCGATTAATTCAGG-
1 TAATTCGGTTAATTCGATTAATTC-GGT
* *
14410435 TAATTCGGTCAATTTGATTAATTCGGT
1 TAATTCGGTTAATTCGATTAATTCGGT
** *
14410462 TAATTTAGTTAATTCGGTTAATT
1 TAATTCGGTTAATTCGATTAATT
14410485 TTATACTTAT
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 2 0.05
27 39 0.95
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (27 bp):
TAATTCGGTTAATTCGATTAATTCGGT
Found at i:14410454 original size:36 final size:36
Alignment explanation
Indices: 14410409--14410485 Score: 109
Period size: 36 Copynumber: 2.1 Consensus size: 36
14410399 TTATACAAAT
*
14410409 AATTCGATTAATTCGATTAATTCAGGTAATTCGGTC
1 AATTTGATTAATTCGATTAATTCAGGTAATTCGGTC
* * * *
14410445 AATTTGATTAATTCGGTTAATTTAGTTAATTCGGTT
1 AATTTGATTAATTCGATTAATTCAGGTAATTCGGTC
14410481 AATTT
1 AATTT
14410486 TATACTTATT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (36 bp):
AATTTGATTAATTCGATTAATTCAGGTAATTCGGTC
Found at i:14410485 original size:18 final size:18
Alignment explanation
Indices: 14410416--14410485 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
14410406 AATAATTCGA
* *
14410416 TTAATTCGATTAATTCAG
1 TTAATTCGGTTAATTTAG
* *
14410434 GTAATTCGGTCAATTT-G
1 TTAATTCGGTTAATTTAG
14410451 ATTAATTCGGTTAATTTAG
1 -TTAATTCGGTTAATTTAG
14410470 TTAATTCGGTTAATTT
1 TTAATTCGGTTAATTT
14410486 TATACTTATT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
17 1 0.02
18 42 0.95
19 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.47
Consensus pattern (18 bp):
TTAATTCGGTTAATTTAG
Found at i:14421441 original size:118 final size:120
Alignment explanation
Indices: 14421260--14421481 Score: 292
Period size: 118 Copynumber: 1.9 Consensus size: 120
14421250 TACTCGTTCA
*
14421260 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
* * *
14421325 TTAGTAAC-TCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACC
66 ATAGTAACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
* * **
14421379 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGG
* *
14421441 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
14421482 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 58 0.65
119 27 0.30
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACC
Found at i:14421481 original size:40 final size:40
Alignment explanation
Indices: 14421239--14421481 Score: 275
Period size: 40 Copynumber: 6.1 Consensus size: 40
14421229 CGGAATTTAA
** *
14421239 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
14421279 CCGGTTATAGTAACTCACACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
14421319 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14421358 CCGGA-ATTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
14421397 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
14421437 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
14421477 CCGGA
1 CCGGA
14421482 CATCATTCGA
Statistics
Matches: 178, Mismatches: 18, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
38 2 0.01
39 72 0.40
40 92 0.52
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:14425660 original size:46 final size:45
Alignment explanation
Indices: 14425513--14425676 Score: 149
Period size: 46 Copynumber: 3.6 Consensus size: 45
14425503 TCCGAACACA
* *
14425513 TTGAGTTGAGTCCGAGTTCACTTACGGATGCGAATG-TTCGAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACGCCT-GAACTCG
* * * *
14425559 TTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAAGCATCCGAACTCG
1 TTGAGTTGAGTCCGAGTTCACTTAGGATGCGAAC---GC--CTGAACTCG
*
14425606 TTGA-TTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCG
1 TTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACGCCTGAACTCG
*
14425651 TTGAGTTGAGTTCGAGTTCACTTAGG
1 TTGAGTTGAGTCCGAGTTCACTTAGG
14425677 GGCGGGTTAC
Statistics
Matches: 95, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 16 0.17
46 51 0.54
47 15 0.16
49 4 0.04
50 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (45 bp):
TTGAGTTGAGTCCGAGTTCACTTAGGATGCGAACGCCTGAACTCG
Found at i:14428087 original size:18 final size:20
Alignment explanation
Indices: 14428060--14428101 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
14428050 TATAGACTCA
14428060 ATATAAAAC-TAAACAT-AT
1 ATATAAAACTTAAACATCAT
* *
14428078 ATATATAACTTAATCATCAT
1 ATATAAAACTTAAACATCAT
14428098 ATAT
1 ATAT
14428102 GCATGCAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 6 0.30
20 6 0.30
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATAAAACTTAAACATCAT
Found at i:14437308 original size:130 final size:129
Alignment explanation
Indices: 14437035--14437360 Score: 325
Period size: 130 Copynumber: 2.5 Consensus size: 129
14437025 GTGAAATTCC
* * * * *
14437035 AAGGAGATATTCGATTATTTTGGGCAAATGAAAAAGTGCAACCTAGCACGATAGGGCTCGATTCT
1 AAGGA-ATATTCAATTGTTTTGGACAAATGAAAAAGTGCAACCCAGCACGATAGGGCACGATTCT
* * ** * *
14437100 CAAATCGCCAAACATCGAACATCTTCTTCATTTTGAAAGATTTTAGAAAATGTGAGTGAAGTTCC
65 CAAATCACCAAACATCGAACATCATCTTCATTTTGAAAGATTTTAGAAAACATGAATGAAG-ACC
*
14437165 G
129 A
* * * *
14437166 AAGGGATCTTCAATTGTTTTGGACCAATAAAAAAGTGCAACCCAGCACGATAGGGCACGATTCTC
1 AAGGAATATTCAATTGTTTTGGACAAATGAAAAAGTGCAACCCAGCACGATAGGGCACGATTCTC
* ** * * *
14437231 AAATCACCAAACATTGAACATCATCTTTGTTTT-TAAGGTTTTTGATAAACATGAATGTAA-ACC
66 AAATCACCAAACATCGAACATCATCTTCATTTTGAAAGATTTTAGA-AAACATGAATG-AAGACC
14437294 TA
129 -A
* * * * * *
14437296 AAGGAATATTCAATTGTTTTAGACAAACGAGAAA-TCACAACCCAGCACGATAAGGCATGATTCT
1 AAGGAATATTCAATTGTTTTGGACAAATGAAAAAGT-GCAACCCAGCACGATAGGGCACGATTCT
14437360 C
65 C
14437361 GAATTGTCAA
Statistics
Matches: 159, Mismatches: 32, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
129 12 0.08
130 141 0.89
131 6 0.04
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (129 bp):
AAGGAATATTCAATTGTTTTGGACAAATGAAAAAGTGCAACCCAGCACGATAGGGCACGATTCTC
AAATCACCAAACATCGAACATCATCTTCATTTTGAAAGATTTTAGAAAACATGAATGAAGACCA
Found at i:14437570 original size:128 final size:132
Alignment explanation
Indices: 14437295--14437634 Score: 368
Period size: 130 Copynumber: 2.6 Consensus size: 132
14437285 ATGTAAACCT
* * * * * * * * *
14437295 AAAGGAATATTCAATTGTTTTAGACAAACGAGAAATCACAACCCAGCACGATAAGGCATGATT-C
1 AAAGG-ATATTCGATTATTTTAAACAAACGCGAAATTACAACCCAACACGTTAGGGCACGATTCC
* * * ** * ** * *
14437359 TCGAATTGTCAAACACCGAGTATTACCTTCGTTTTAAAGGATTTTTAGAAGACCTGAGTGAAATT
65 ACGAATTGCCAAATATTGCGTATCGCCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATT
14437424 TTG
130 TTG
* * *
14437427 AAAGGATATTTGATTATTTTAAAC-AA-TCGAAATTGCAACCCAACACGTTAGGGCACGATTCCA
1 AAAGGATATTCGATTATTTTAAACAAACGCGAAATTACAACCCAACACGTTAGGGCACGATTCCA
* *
14437490 CGAATTGCCAAATATTGCGTATCGCCTTCG-TTTAAGGGA-TTTTAAAATACATGAGTGAAATTT
66 CGAATTGCCAAATATTGCGTATCGCCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTT
14437553 TG
131 TG
* *
14437555 -AAGTGATATTCGATTATTTTGAGCAAACGCGAAATTACAACCCAACACGTTAGGGCACGATTCC
1 AAAG-GATATTCGATTATTTTAAACAAACGCGAAATTACAACCCAACACGTTAGGGCACGATTCC
* *
14437619 GCGAATTGTCAAATAT
65 ACGAATTGCCAAATAT
14437635 CAAATCTCGT
Statistics
Matches: 173, Mismatches: 31, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
127 3 0.02
128 40 0.23
129 36 0.21
130 74 0.43
131 15 0.09
132 5 0.03
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (132 bp):
AAAGGATATTCGATTATTTTAAACAAACGCGAAATTACAACCCAACACGTTAGGGCACGATTCCA
CGAATTGCCAAATATTGCGTATCGCCTTCGTTTTAAAGGATTTTTAAAAGACATGAGTGAAATTT
TG
Found at i:14444613 original size:90 final size:93
Alignment explanation
Indices: 14444448--14444668 Score: 238
Period size: 90 Copynumber: 2.4 Consensus size: 93
14444438 GGGATAAATT
* * * *
14444448 GTCGATGCCATGCCCCAGACATGGTCTTATACTGGCTCTCATATATGCGTGTTGATGCATGTCCT
1 GTCGATGCCATGCCCCAGACATGGTCTTATACTGGCACTCATATAT-CGTGCTGAAGCATGTCCC
*
14444513 AGACATGTCTTACACTAGTACTACTCTTA
65 AGACAAGTCTTACACTAGTACTACTCTTA
*
14444542 GTCGATG-CATGTCCCAGACAT-GTCTTACT-CTGGCACTCATAATAT-G-GCTGAAGCATGTCC
1 GTCGATGCCATGCCCCAGACATGGTCTTA-TACTGGCACTCAT-ATATCGTGCTGAAGCATGTCC
** *
14444602 CAGACAAGTCTTACACTAGCCCT-CGTCTGGA
64 CAGACAAGTCTTACACTAGTACTAC-TCT-TA
* * *
14444633 TGCCGATGCCATGTCCCAGACATGGTCTCATACTGG
1 -GTCGATGCCATGCCCCAGACATGGTCTTATACTGG
14444669 TGCACAAATC
Statistics
Matches: 108, Mismatches: 11, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
89 1 0.01
90 34 0.31
91 2 0.02
92 22 0.20
93 33 0.31
94 16 0.15
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (93 bp):
GTCGATGCCATGCCCCAGACATGGTCTTATACTGGCACTCATATATCGTGCTGAAGCATGTCCCA
GACAAGTCTTACACTAGTACTACTCTTA
Found at i:14448405 original size:27 final size:27
Alignment explanation
Indices: 14448374--14448551 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14448364 TAAATTGTAC
14448374 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14448401 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14448427 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14448455 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14448483 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14448510 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14448537 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14448552 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14448488 original size:82 final size:81
Alignment explanation
Indices: 14448375--14448530 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14448365 AAATTGTACA
* *
14448375 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14448439 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14448456 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14448521 TGCGAGTTGA
65 TGCGAATTGA
14448531 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14448542 original size:82 final size:81
Alignment explanation
Indices: 14448371--14448551 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14448361 GATTAAATTG
* *
14448371 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14448436 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14448452 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14448516 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14448534 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14448552 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14448562 original size:27 final size:27
Alignment explanation
Indices: 14448456--14448562 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
14448446 TGACCATGCG
* * * *
14448456 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
14448484 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
14448511 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
14448538 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
14448563 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:14452585 original size:42 final size:43
Alignment explanation
Indices: 14452484--14452590 Score: 137
Period size: 44 Copynumber: 2.5 Consensus size: 43
14452474 TGTGTTATCA
* * * *
14452484 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTCTGTTTTACG
1 TGTAAGACCATGTCTGGGACATCGACATCGAC-TCTGATTTACG
14452528 TGTAAGACCATGTCTGGGACATCGACATCGTA-TCTGATTT-CG
1 TGTAAGACCATGTCTGGGACATCGACATCG-ACTCTGATTTACG
*
14452570 TGTAAGACCTTGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
14452591 GTGGCATCGA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
42 22 0.39
43 7 0.12
44 27 0.47
45 1 0.02
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATCGACATCGACTCTGATTTACG
Found at i:14452639 original size:43 final size:43
Alignment explanation
Indices: 14452468--14452640 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 43
14452458 CATAGGATTT
*
14452468 TCGATATGTG-TTATCATGTAAGACCATGTCTGGGACGTTGGCA
1 TCGATATCTGATTA-CATGTAAGACCATGTCTGGGACGTTGGCA
* * * * *
14452511 TCGACT-TCTGTTTTACGTGTAAGACCATGTCTGGGACATCGACA
1 TCGA-TATCTG-ATTACATGTAAGACCATGTCTGGGACGTTGGCA
* * *
14452555 TCG-TATCTGATTTCGTGTAAGACCTTGTCTGGGACAG-TGGCA
1 TCGATATCTGATTACATGTAAGACCATGTCTGGGAC-GTTGGCA
* * * *
14452597 TCGATATTTGATTACATATAAGACCACGTCTAGGACGTTGGCA
1 TCGATATCTGATTACATGTAAGACCATGTCTGGGACGTTGGCA
14452640 T
1 T
14452641 TGTATATGTT
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
42 31 0.30
43 42 0.40
44 29 0.28
45 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATCTGATTACATGTAAGACCATGTCTGGGACGTTGGCA
Found at i:14454827 original size:48 final size:48
Alignment explanation
Indices: 14454752--14454979 Score: 207
Period size: 48 Copynumber: 4.9 Consensus size: 48
14454742 CACATGGTAG
* * *
14454752 GATGCCAATGCCATATTCCAGATATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATC
* * * **
14454800 GATGCCAATGCCATGTCCCAAAAATGGTCTTACATAGGATCATAGGTC
1 GATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATC
* * *
14454848 GATGCCAATGTCATGTCCTAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATC
* * ** * ** * *
14454896 GATG---TTG--ATAG-CCTAGCTATGGTCTTACACGAAATTACATATT
1 GATGCCAATGCCAT-GTCCCAGAAATGGTCTTACATGGGATCACATATC
* *
14454939 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATC
1 GATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATC
14454980 GCACATAACC
Statistics
Matches: 140, Mismatches: 33, Indels: 14
0.75 0.18 0.07
Matches are distributed among these distances:
43 31 0.22
44 1 0.01
45 2 0.01
46 1 0.01
47 1 0.01
48 104 0.74
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCCAGAAATGGTCTTACATGGGATCACATATC
Found at i:14457507 original size:26 final size:26
Alignment explanation
Indices: 14457476--14457528 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14457466 ACTGTAGATG
14457476 GCATTATTGATGTATTGTGTTTGTAT
1 GCATTATTGATGTATTGTGTTTGTAT
14457502 GCATTATTGATGTATTGTGTTTGTAT
1 GCATTATTGATGTATTGTGTTTGTAT
14457528 G
1 G
14457529 ACAGAGTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.04, G:0.25, T:0.53
Consensus pattern (26 bp):
GCATTATTGATGTATTGTGTTTGTAT
Found at i:14462341 original size:46 final size:46
Alignment explanation
Indices: 14462288--14462463 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
14462278 TATTTGGGCA
14462288 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
14462334 TCCGAACTCGTTGAGTTTAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
14462381 TCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
14462427 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14462464 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:14462443 original size:93 final size:93
Alignment explanation
Indices: 14462284--14462455 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
14462274 AGGATATTTG
*
14462284 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
*
14462349 TTTAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * *
14462377 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
14462442 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
14462456 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:14465429 original size:15 final size:15
Alignment explanation
Indices: 14465409--14465477 Score: 84
Period size: 15 Copynumber: 4.6 Consensus size: 15
14465399 ATATCTTGGG
14465409 TTTCTTTATCCTGGA
1 TTTCTTTATCCTGGA
* *
14465424 TCTCTTTATTCTGGA
1 TTTCTTTATCCTGGA
* *
14465439 TTTCTTTATTCTGGG
1 TTTCTTTATCCTGGA
* *
14465454 TTTCTCTATCTTGGA
1 TTTCTTTATCCTGGA
14465469 TTTCTTTAT
1 TTTCTTTAT
14465478 TCGGTTTTCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 45 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TTTCTTTATCCTGGA
Found at i:14465469 original size:45 final size:44
Alignment explanation
Indices: 14465405--14465489 Score: 125
Period size: 45 Copynumber: 1.9 Consensus size: 44
14465395 TATCATATCT
*
14465405 TGGGTTTCTTTATCCTGGATCTCTTTATTCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCCTGGATCTCTTTATTC-GGATTTCTTTATTC
* * *
14465450 TGGGTTTCTCTATCTTGGATTTCTTTATTCGGTTTTCTTT
1 TGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTTT
14465490 TTATCTTTGT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 9 0.25
45 27 0.75
ACGTcount: A:0.09, C:0.16, G:0.16, T:0.58
Consensus pattern (44 bp):
TGGGTTTCTCTATCCTGGATCTCTTTATTCGGATTTCTTTATTC
Found at i:14465478 original size:30 final size:30
Alignment explanation
Indices: 14465400--14465487 Score: 99
Period size: 30 Copynumber: 3.0 Consensus size: 30
14465390 TATAGTATCA
* * * *
14465400 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
*
14465430 TAT-TCTGGATTTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
14465460 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
14465488 TTTTATCTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
29 8 0.16
30 41 0.82
31 1 0.02
ACGTcount: A:0.10, C:0.17, G:0.16, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:14475151 original size:4 final size:4
Alignment explanation
Indices: 14475144--14475186 Score: 86
Period size: 4 Copynumber: 10.8 Consensus size: 4
14475134 ACTTTGAGAT
14475144 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
14475187 AAGAAACCGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.23, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:14479169 original size:21 final size:21
Alignment explanation
Indices: 14479143--14479186 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
14479133 CCAAAAAGAC
14479143 CCTTTAGAGAGAACTTAGAAA
1 CCTTTAGAGAGAACTTAGAAA
14479164 CCTTTAGAGAGAACTTAGAAA
1 CCTTTAGAGAGAACTTAGAAA
14479185 CC
1 CC
14479187 ATAGAAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.23
Consensus pattern (21 bp):
CCTTTAGAGAGAACTTAGAAA
Found at i:14480056 original size:53 final size:53
Alignment explanation
Indices: 14479996--14480102 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
14479986 GAAAAAACTG
*
14479996 ACGTATTATTAATACCATAAATTGGAAAAATATCAAATTAATAATTATGTGCT
1 ACGTATTATTAATACCATAAATTAGAAAAATATCAAATTAATAATTATGTGCT
14480049 ACGTATTATTAATACCATAAATTAGAAAAATATCAAATTAATAATTATGTGCT
1 ACGTATTATTAATACCATAAATTAGAAAAATATCAAATTAATAATTATGTGCT
14480102 A
1 A
14480103 TATACCATTA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.47, C:0.09, G:0.08, T:0.36
Consensus pattern (53 bp):
ACGTATTATTAATACCATAAATTAGAAAAATATCAAATTAATAATTATGTGCT
Found at i:14484316 original size:46 final size:46
Alignment explanation
Indices: 14484227--14484320 Score: 109
Period size: 46 Copynumber: 2.0 Consensus size: 46
14484217 AGTATATTAC
* * *
14484227 TAATACATAAAATAATATTATAATATATAACTTTTATTAAAAATAT
1 TAATACATAAAATAATATTATAATATATAAATTATAATAAAAATAT
* *
14484273 TAATACAT-ATATAACTATTGTAATAATATAAATTATAATAAAATATAT
1 TAATACATAAAATAA-TATTATAAT-ATATAAATTATAATAAAA-ATAT
14484321 GGTGTCACAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
45 5 0.12
46 16 0.40
47 15 0.38
48 4 0.10
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.40
Consensus pattern (46 bp):
TAATACATAAAATAATATTATAATATATAAATTATAATAAAAATAT
Found at i:14484527 original size:16 final size:17
Alignment explanation
Indices: 14484503--14484535 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
14484493 TATAATATGT
14484503 ACTACTATTAT-ATATA
1 ACTACTATTATGATATA
*
14484519 ACTATTATTATGATATA
1 ACTACTATTATGATATA
14484536 GATTATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (17 bp):
ACTACTATTATGATATA
Found at i:14484711 original size:17 final size:17
Alignment explanation
Indices: 14484689--14484724 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
14484679 CAACTAGTAT
14484689 ATTAATAAATAATAATA
1 ATTAATAAATAATAATA
* *
14484706 ATTAATAATTAATATTA
1 ATTAATAAATAATAATA
14484723 AT
1 AT
14484725 GTACTACTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTAATAAATAATAATA
Found at i:14497664 original size:25 final size:26
Alignment explanation
Indices: 14497628--14497676 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
14497618 AATACTTATC
14497628 TTAATAGTATTATATTAAT-TTAATA
1 TTAATAGTATTATATTAATATTAATA
*
14497653 TTAA-AGTGATTATCTTAATATTAA
1 TTAATAGT-ATTATATTAATATTAA
14497677 ATTTAATCTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 14 0.67
26 4 0.19
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (26 bp):
TTAATAGTATTATATTAATATTAATA
Found at i:14497676 original size:68 final size:68
Alignment explanation
Indices: 14497596--14497733 Score: 206
Period size: 69 Copynumber: 2.0 Consensus size: 68
14497586 TATTTTAATA
* * *
14497596 TATCTAATATTAAATTAAATTTAATACTTATCTTAAT-AGTATTATATTAATTTAATATTAAAGT
1 TATCTAATATTAAATTAAATCTAATACTTATCTTAATCAGTATTATATTAATTTAATAGTAAACT
14497660 GAT
66 GAT
* * *
14497663 TATCTTAATATTAAATTTAATCTAATATTTATCTTTATCAGTATTATATTAATTTAATAGTAAAC
1 TATC-TAATATTAAATTAAATCTAATACTTATCTTAATCAGTATTATATTAATTTAATAGTAAAC
14497728 TGAT
65 TGAT
14497732 TA
1 TA
14497734 AGTTTAATCA
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
67 4 0.06
68 29 0.46
69 30 0.48
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.49
Consensus pattern (68 bp):
TATCTAATATTAAATTAAATCTAATACTTATCTTAATCAGTATTATATTAATTTAATAGTAAACT
GAT
Found at i:14498981 original size:14 final size:14
Alignment explanation
Indices: 14498962--14498989 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14498952 TGTTTTTCCC
14498962 TTAAAAGAAAAACT
1 TTAAAAGAAAAACT
14498976 TTAAAAGAAAAACT
1 TTAAAAGAAAAACT
14498990 GTGGAGAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
TTAAAAGAAAAACT
Found at i:14502306 original size:48 final size:48
Alignment explanation
Indices: 14502235--14502426 Score: 199
Period size: 48 Copynumber: 4.0 Consensus size: 48
14502225 TACTCAGAAG
* * * **
14502235 TCTCGCACACTAAGTGCTCATATCATGGCCCGAAGCCATCTCAATGTA
1 TCTCGCACCCTAAGTGATAATATCATGGCCCGAAGCCAAATCAATGTA
* * *
14502283 TCTCGCACCCGAAGTGATAATATCATGGCCC-AAACCAAATCAATGAA
1 TCTCGCACCCTAAGTGATAATATCATGGCCCGAAGCCAAATCAATGTA
* * ** * *
14502330 GCTCACACCCTAAGT-ACCGATATCATGGCCTGAAGCCAAATCAATATA
1 TCTCGCACCCTAAGTGA-TAATATCATGGCCCGAAGCCAAATCAATGTA
* * * *
14502378 ACTCGCACCCAAAGTGCTAATATCATGTCCCGAAGCCAAATCAATGTA
1 TCTCGCACCCTAAGTGATAATATCATGGCCCGAAGCCAAATCAATGTA
14502426 T
1 T
14502427 TCCCTAATGA
Statistics
Matches: 114, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
46 1 0.01
47 35 0.31
48 78 0.68
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.22
Consensus pattern (48 bp):
TCTCGCACCCTAAGTGATAATATCATGGCCCGAAGCCAAATCAATGTA
Found at i:14509382 original size:27 final size:28
Alignment explanation
Indices: 14509298--14509395 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
14509288 CATGAGATTG
* * * *
14509298 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
14509327 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
14509355 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
14509382 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
14509396 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:14509406 original size:27 final size:27
Alignment explanation
Indices: 14509326--14509408 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
14509316 TAAATTGTAC
* *
14509326 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
14509354 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
14509381 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
14509408 A
1 A
14509409 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:14517644 original size:27 final size:28
Alignment explanation
Indices: 14517560--14517657 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
14517550 CATGAGATTG
* * * *
14517560 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
14517589 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
14517617 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
14517644 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
14517658 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:14517668 original size:27 final size:27
Alignment explanation
Indices: 14517588--14517670 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
14517578 TAAATTGTAC
* *
14517588 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
14517616 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
14517643 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
14517670 A
1 A
14517671 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:14519635 original size:31 final size:30
Alignment explanation
Indices: 14519600--14519660 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
14519590 GAAACAGAAT
*
14519600 GAAAGCAAACGAAAC-AGAGAAGAACAGGGGA
1 GAAAG-AAACGAAACAAGA-AAGAAAAGGGGA
* *
14519631 GAAAGAAAGGAAAGAAGAAAGAAAAGGGGA
1 GAAAGAAACGAAACAAGAAAGAAAAGGGGA
14519661 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.59, C:0.07, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGAAAGAAAAGGGGA
Found at i:14535719 original size:6 final size:6
Alignment explanation
Indices: 14535708--14535752 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
14535698 GTAATATTAT
14535708 TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TAT
1 TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA TAT
14535753 TATTTAATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (6 bp):
TATAAA
Found at i:14536605 original size:26 final size:26
Alignment explanation
Indices: 14536576--14536629 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
14536566 TTTTAAGAAA
* *
14536576 TATTTATTACTTA-ATTTTTTTTATTT
1 TATTTATTAATTACATTTTTATT-TTT
*
14536602 TATTTTTTAATTACATTTTTATTTTT
1 TATTTATTAATTACATTTTTATTTTT
14536628 TA
1 TA
14536630 ACTAAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 16 0.67
27 8 0.33
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.72
Consensus pattern (26 bp):
TATTTATTAATTACATTTTTATTTTT
Found at i:14540669 original size:29 final size:29
Alignment explanation
Indices: 14540636--14540699 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
14540626 AAATAAGTTG
* *
14540636 ATCTTTATCCAACCAATTTCAAATATTTA
1 ATCTTTATCCAACCAACTTCAAATATTCA
* *
14540665 ATCTTTATCCAGCCAACTTCAAATCTTCA
1 ATCTTTATCCAACCAACTTCAAATATTCA
14540694 ATCTTT
1 ATCTTT
14540700 CAATCTACCC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.33, C:0.25, G:0.02, T:0.41
Consensus pattern (29 bp):
ATCTTTATCCAACCAACTTCAAATATTCA
Found at i:14544156 original size:16 final size:17
Alignment explanation
Indices: 14544137--14544169 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14544127 TTTAATATAA
14544137 TTAAT-ATTTTGAAAAT
1 TTAATGATTTTGAAAAT
*
14544153 TTAATGATTTTGCAAAT
1 TTAATGATTTTGAAAAT
14544170 GAAGTATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.48
Consensus pattern (17 bp):
TTAATGATTTTGAAAAT
Found at i:14549345 original size:23 final size:23
Alignment explanation
Indices: 14549308--14549352 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14549298 AGTTGGGTTC
* * *
14549308 AAACTTGATCGAGTATTATTATT
1 AAACTTAATCAAGTACTATTATT
14549331 AAACTTAATCAAGTACTATTAT
1 AAACTTAATCAAGTACTATTAT
14549353 CCAAGATTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (23 bp):
AAACTTAATCAAGTACTATTATT
Found at i:14567094 original size:46 final size:44
Alignment explanation
Indices: 14567034--14567148 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
14567024 ACAGGACAGA
* *
14567034 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
14567080 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
14567124 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
14567149 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:14567129 original size:44 final size:45
Alignment explanation
Indices: 14567034--14567167 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
14567024 ACAGGACAGA
* *
14567034 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
14567080 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
14567124 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
14567168 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:14569070 original size:39 final size:39
Alignment explanation
Indices: 14569027--14569113 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
14569017 TCGGCAATTA
*
14569027 GCCTGCTAGGTATAAACCTGAACTTATCATCGGCACAAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACAAG
* *
14569066 GCCTGCTAGGTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACAAG
14569105 GCCTGCTAG
1 GCCTGCTAG
14569114 ACATTAAGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (39 bp):
GCCTGCTAGGTATAAACCTGAACTTATCACCGGCACAAG
Found at i:14572700 original size:43 final size:42
Alignment explanation
Indices: 14572653--14572746 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 42
14572643 CCCAGCGAGG
*
14572653 GTCTTACACGAAAT-CATATAACGATGCCAATGTCCCAGACATA
1 GTCTTACACGAAATCCA-AT-ACAATGCCAATGTCCCAGACATA
* * *
14572696 GTCTTACACGTAATCGCAATACAATTCCAATGTCCCAGACATG
1 GTCTTACACGAAATC-CAATACAATGCCAATGTCCCAGACATA
14572739 GTCTTACA
1 GTCTTACA
14572747 TGTAATCACA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 41 0.91
44 2 0.04
45 2 0.04
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.26
Consensus pattern (42 bp):
GTCTTACACGAAATCCAATACAATGCCAATGTCCCAGACATA
Found at i:14577946 original size:21 final size:21
Alignment explanation
Indices: 14577922--14577968 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
14577912 AGTTAGGGTT
14577922 TGAAATCAACAGAACAATGTA
1 TGAAATCAACAGAACAATGTA
*
14577943 TGAAATCAACATAACAATGTA
1 TGAAATCAACAGAACAATGTA
14577964 TGAAA
1 TGAAA
14577969 AGTAAGAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (21 bp):
TGAAATCAACAGAACAATGTA
Found at i:14579512 original size:6 final size:6
Alignment explanation
Indices: 14579503--14579532 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
14579493 TGACGAGATT
*
14579503 CCCTTC CCCTTC CCCTTC CTCTTC CCCTTC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC
14579533 TCTTCTTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (6 bp):
CCCTTC
Found at i:14579535 original size:11 final size:12
Alignment explanation
Indices: 14579503--14579537 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
14579493 TGACGAGATT
*
14579503 CCCTTCCCCTTC
1 CCCTTCCTCTTC
14579515 CCCTTCCTCTTC
1 CCCTTCCTCTTC
14579527 CCCTT-CTCTTC
1 CCCTTCCTCTTC
14579538 TTTCCCTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 6 0.27
12 16 0.73
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (12 bp):
CCCTTCCTCTTC
Found at i:14589103 original size:17 final size:16
Alignment explanation
Indices: 14589065--14589108 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
14589055 TCAACAATCG
14589065 CTAAATAAAATTAGAAA
1 CTAAA-AAAATTAGAAA
14589082 CTAAAAAAATATA-AAA
1 CTAAAAAAAT-TAGAAA
14589098 CTTAAAAAAAT
1 C-TAAAAAAAT
14589109 CTAACAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 9 0.36
17 16 0.64
ACGTcount: A:0.68, C:0.07, G:0.02, T:0.23
Consensus pattern (16 bp):
CTAAAAAAATTAGAAA
Found at i:14590069 original size:15 final size:15
Alignment explanation
Indices: 14590049--14590078 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14590039 TTCACTGTTA
*
14590049 TGTCTTTAGTATTTT
1 TGTCTTTAATATTTT
14590064 TGTCTTTAATATTTT
1 TGTCTTTAATATTTT
14590079 GCATGCGTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.10, T:0.67
Consensus pattern (15 bp):
TGTCTTTAATATTTT
Found at i:14591258 original size:25 final size:26
Alignment explanation
Indices: 14591208--14591260 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14591198 AACTGTAGAG
14591208 AGAAAATTATCTAAAGAAATTATTTT
1 AGAAAATTATCTAAAGAAATTATTTT
* *
14591234 AGAAAATT-TCTAGAGATAATTTTTTT
1 AGAAAATTATCTAAAGA-AATTATTTT
14591260 A
1 A
14591261 TATACAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (26 bp):
AGAAAATTATCTAAAGAAATTATTTT
Found at i:14597237 original size:21 final size:21
Alignment explanation
Indices: 14597213--14597259 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
14597203 AGTTAGGGTT
14597213 TGAAATCAACAGAACAATGTA
1 TGAAATCAACAGAACAATGTA
*
14597234 TGAAATCAACATAACAATGTA
1 TGAAATCAACAGAACAATGTA
14597255 TGAAA
1 TGAAA
14597260 AGTAAGAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (21 bp):
TGAAATCAACAGAACAATGTA
Found at i:14598801 original size:6 final size:6
Alignment explanation
Indices: 14598792--14598827 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
14598782 TGACGAGATT
14598792 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC
14598828 TCTTCTTTCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.67, G:0.00, T:0.33
Consensus pattern (6 bp):
CCCTTC
Found at i:14608393 original size:18 final size:17
Alignment explanation
Indices: 14608352--14608397 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
14608342 TCAACAATCG
*
14608352 CTAAATAAAATTAGAAA
1 CTAAAAAAAATTAGAAA
14608369 CTAAAAAAAATATA-AAA
1 CTAAAAAAAAT-TAGAAA
14608386 CTTAAAAAAAAT
1 C-TAAAAAAAAT
14608398 CTAACAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 14 0.54
18 12 0.46
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.22
Consensus pattern (17 bp):
CTAAAAAAAATTAGAAA
Found at i:14608409 original size:19 final size:18
Alignment explanation
Indices: 14608370--14608409 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14608360 AATTAGAAAC
*
14608370 TAAAAAAAATATAAAACT
1 TAAAAAAAATATAAAAAT
*
14608388 TAAAAAAAATCTAACAAAT
1 TAAAAAAAATATAA-AAAT
14608407 TAA
1 TAA
14608410 TAAACACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.70, C:0.07, G:0.00, T:0.23
Consensus pattern (18 bp):
TAAAAAAAATATAAAAAT
Found at i:14609360 original size:15 final size:15
Alignment explanation
Indices: 14609340--14609369 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14609330 TTCACTGTTA
*
14609340 TGTCTTTAGTATTTT
1 TGTCTTTAATATTTT
14609355 TGTCTTTAATATTTT
1 TGTCTTTAATATTTT
14609370 GCATGCGTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.07, G:0.10, T:0.67
Consensus pattern (15 bp):
TGTCTTTAATATTTT
Found at i:14610548 original size:25 final size:26
Alignment explanation
Indices: 14610498--14610550 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14610488 AACTGTAGAG
14610498 AGAAAATTATCTAAAGAAATTATTTT
1 AGAAAATTATCTAAAGAAATTATTTT
* *
14610524 AGAAAATT-TCTAGAGATAATTTTTTT
1 AGAAAATTATCTAAAGA-AATTATTTT
14610550 A
1 A
14610551 TATACAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (26 bp):
AGAAAATTATCTAAAGAAATTATTTT
Found at i:14616521 original size:21 final size:21
Alignment explanation
Indices: 14616495--14616541 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
14616485 AGTTAGGGTT
14616495 TGAAATCAACAGAACAATGTA
1 TGAAATCAACAGAACAATGTA
*
14616516 TGAAATCAACATAACAATGTA
1 TGAAATCAACAGAACAATGTA
14616537 TGAAA
1 TGAAA
14616542 AGTAAGAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (21 bp):
TGAAATCAACAGAACAATGTA
Found at i:14618077 original size:6 final size:6
Alignment explanation
Indices: 14618068--14618096 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
14618058 TGACGAGATT
14618068 CCCTTC CCCTTC CCCTT- CCCTTC CCCTTC
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC
14618097 TCTTCTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.00, C:0.66, G:0.00, T:0.34
Consensus pattern (6 bp):
CCCTTC
Found at i:14618088 original size:11 final size:11
Alignment explanation
Indices: 14618068--14618101 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14618058 TGACGAGATT
14618068 CCCTTCCCCTTC
1 CCCTT-CCCTTC
14618080 CCCTTCCCTTC
1 CCCTTCCCTTC
*
14618091 CCCTTCTCTTC
1 CCCTTCCCTTC
14618102 TTTCCCTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 16 0.76
12 5 0.24
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (11 bp):
CCCTTCCCTTC
Found at i:14627674 original size:17 final size:16
Alignment explanation
Indices: 14627636--14627678 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
14627626 TCAACAATCG
14627636 CTAAATAAAATTAGAAA
1 CTAAA-AAAATTAGAAA
14627653 CTAAAAAAATATA-AAA
1 CTAAAAAAAT-TAGAAA
14627669 CTTAAAAAAA
1 C-TAAAAAAA
14627679 ATCTAACAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
16 9 0.38
17 15 0.62
ACGTcount: A:0.70, C:0.07, G:0.02, T:0.21
Consensus pattern (16 bp):
CTAAAAAAATTAGAAA
Found at i:14628641 original size:14 final size:14
Alignment explanation
Indices: 14628622--14628651 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14628612 TTCACTGTTA
*
14628622 TGTCTTTAGTATTT
1 TGTCTTTAATATTT
14628636 TGTCTTTAATATTT
1 TGTCTTTAATATTT
14628650 TG
1 TG
14628652 CATGCGTAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.07, G:0.13, T:0.63
Consensus pattern (14 bp):
TGTCTTTAATATTT
Found at i:14629830 original size:25 final size:26
Alignment explanation
Indices: 14629780--14629832 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14629770 AACTGTAGAG
14629780 AGAAAATTATCTAAAGAAATTATTTT
1 AGAAAATTATCTAAAGAAATTATTTT
* *
14629806 AGAAAATT-TCTAGAGATAATTTTTTT
1 AGAAAATTATCTAAAGA-AATTATTTT
14629832 A
1 A
14629833 TATACAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.42
Consensus pattern (26 bp):
AGAAAATTATCTAAAGAAATTATTTT
Found at i:14638596 original size:21 final size:21
Alignment explanation
Indices: 14638572--14638614 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
14638562 CCTCATTGGC
*
14638572 AAGGTTTTAGTTCTCATGGTT
1 AAGGCTTTAGTTCTCATGGTT
* *
14638593 AAGGCTTTCGTTCTCGTGGTT
1 AAGGCTTTAGTTCTCATGGTT
14638614 A
1 A
14638615 TGTTCATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.14, G:0.26, T:0.44
Consensus pattern (21 bp):
AAGGCTTTAGTTCTCATGGTT
Found at i:14641417 original size:83 final size:84
Alignment explanation
Indices: 14641265--14641447 Score: 269
Period size: 83 Copynumber: 2.2 Consensus size: 84
14641255 TCTTTGCTTG
* * *
14641265 GAAACAAAACAATATCGAATAAAATCTTGTTAAACGGCGCAAATAAATCCCAAAATAGATTTTAT
1 GAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGCAAATAAATCCCAAAATAGATTTTAT
14641330 TTAATTCTATTCTAATTTA
66 TTAATTCTATTCTAATTTA
* * ** * *
14641349 GAAACAAAATAAAATCAAATAAAGTCTTGTTAAATGG-GGGAATAAATTCCGAAATAGATTTTAT
1 GAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGCAAATAAATCCCAAAATAGATTTTAT
*
14641413 TTAATTCTATTCTAATTTT
66 TTAATTCTATTCTAATTTA
14641432 GAAACAAAATAAAATC
1 GAAACAAAATAAAATC
14641448 CTGTTAAACG
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
83 57 0.64
84 32 0.36
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.32
Consensus pattern (84 bp):
GAAACAAAATAAAATCAAATAAAATCTTGTTAAACGGCGCAAATAAATCCCAAAATAGATTTTAT
TTAATTCTATTCTAATTTA
Found at i:14641630 original size:61 final size:62
Alignment explanation
Indices: 14641564--14641688 Score: 207
Period size: 63 Copynumber: 2.0 Consensus size: 62
14641554 TCTTGAAACG
*
14641564 GATTTTATTTTACTCG-TTTTTTGAAATAAAACAAAATTTGAAATAAAATCGTTGAACGGCA
1 GATTTTATTTTACTCGTTTTTTTGAAATAAAACAAAATTTGAAATAAAATCGTTAAACGGCA
* *
14641625 GATTTTATTTTACTCGTTTTTTTTGAAATAAAACAAAATTTGTAATAAAATTGTTAAACGGCA
1 GATTTTATTTTACTCG-TTTTTTTGAAATAAAACAAAATTTGAAATAAAATCGTTAAACGGCA
14641688 G
1 G
14641689 GAATCAATCC
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
61 16 0.27
63 43 0.73
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (62 bp):
GATTTTATTTTACTCGTTTTTTTGAAATAAAACAAAATTTGAAATAAAATCGTTAAACGGCA
Found at i:14641800 original size:89 final size:86
Alignment explanation
Indices: 14641644--14641803 Score: 196
Period size: 89 Copynumber: 1.8 Consensus size: 86
14641634 TTACTCGTTT
* * * * *
14641644 TTTTTGAAATAAAACAAAATTTGTAATAAAATTGTTAAACGGCAGGAATCAATCCTGAAATGAAT
1 TTTTGGAAATAAAACAAAATTAGTAATAAAATTGTTAAACGGCAGGAATAAATCCCGAAACGAAT
14641709 TTTATTTACCTTTAATTTCCC
66 TTTATTTACCTTTAATTTCCC
* **
14641730 TTTTGGAAATAAAATCAAAATAATAG-AATAAAATTCGTTGAACGGTGGGAATAAATCCCGAAAC
1 TTTTGGAAATAAAA-CAAAAT--TAGTAATAAAATT-GTTAAACGGCAGGAATAAATCCCGAAAC
*
14641794 GGATTTTATT
62 GAATTTTATT
14641804 AATTTTGGAC
Statistics
Matches: 61, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
86 13 0.21
87 6 0.10
88 9 0.15
89 33 0.54
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (86 bp):
TTTTGGAAATAAAACAAAATTAGTAATAAAATTGTTAAACGGCAGGAATAAATCCCGAAACGAAT
TTTATTTACCTTTAATTTCCC
Found at i:14667850 original size:14 final size:14
Alignment explanation
Indices: 14667833--14667866 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
14667823 AAGATTTTTG
*
14667833 AATTATAATTTATT
1 AATTATAATTAATT
14667847 AATTATAATTAATT
1 AATTATAATTAATT
*
14667861 AGTTAT
1 AATTAT
14667867 TAGCTCAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (14 bp):
AATTATAATTAATT
Found at i:14670241 original size:11 final size:11
Alignment explanation
Indices: 14670225--14670249 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14670215 CTCATACAAC
14670225 TATAAAAAAAT
1 TATAAAAAAAT
14670236 TATAAAAAAAT
1 TATAAAAAAAT
14670247 TAT
1 TAT
14670250 TTAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TATAAAAAAAT
Found at i:14671394 original size:20 final size:20
Alignment explanation
Indices: 14671369--14671407 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
14671359 CTTACTTCAG
14671369 ATAAAAGCATT-ATTATTAAT
1 ATAAAA-CATTAATTATTAAT
*
14671389 ATAAAACTTTAATTATTAA
1 ATAAAACATTAATTATTAA
14671408 CAAATGTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (20 bp):
ATAAAACATTAATTATTAAT
Found at i:14681567 original size:71 final size:69
Alignment explanation
Indices: 14681443--14681587 Score: 254
Period size: 71 Copynumber: 2.1 Consensus size: 69
14681433 TGTACCACGT
*
14681443 CATCACCTGAAAATTTATATAATTTTTTTTTTAATTTTCAGGTGATGGTGTAGCACAATCACAAA
1 CATCACCTGAAAATTTATATAATTTTTTTTTTAATTTTCAAGTGATGGTGTAGCACAATCACAAA
14681508 GTGC
66 GTGC
*
14681512 CATCACCTGAAAATTTATATAATATATTTTTTTTAATTTTCAAGTGATGGTGTAGCTCAATCACA
1 CATCACCTGAAAATTTATATAAT-T-TTTTTTTTAATTTTCAAGTGATGGTGTAGCACAATCACA
14681577 AAGTGC
64 AAGTGC
14681583 CATCA
1 CATCA
14681588 TCAAACTTTC
Statistics
Matches: 72, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
69 23 0.32
70 1 0.01
71 48 0.67
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (69 bp):
CATCACCTGAAAATTTATATAATTTTTTTTTTAATTTTCAAGTGATGGTGTAGCACAATCACAAA
GTGC
Found at i:14682680 original size:17 final size:17
Alignment explanation
Indices: 14682658--14682690 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14682648 GCAAACAAAA
14682658 AAGTCA-AACAGAAAACC
1 AAGTCAGAA-AGAAAACC
14682675 AAGTCAGAAAGAAAAC
1 AAGTCAGAAAGAAAAC
14682691 ATACCTCAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.61, C:0.18, G:0.15, T:0.06
Consensus pattern (17 bp):
AAGTCAGAAAGAAAACC
Found at i:14686361 original size:15 final size:15
Alignment explanation
Indices: 14686341--14686370 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14686331 CCGTCAACAA
14686341 AGGCTATGTTCATCT
1 AGGCTATGTTCATCT
14686356 AGGCTATGTTCATCT
1 AGGCTATGTTCATCT
14686371 CTAACCTTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (15 bp):
AGGCTATGTTCATCT
Found at i:14686828 original size:28 final size:29
Alignment explanation
Indices: 14686797--14686874 Score: 70
Period size: 28 Copynumber: 2.7 Consensus size: 29
14686787 TATTATTATT
*
14686797 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
14686825 TATATTATTAAATTAATTACATTATAAA-
1 TATATAAATAAATAAATTACATTATAAAG
*
14686853 TATTATATTAAGAAATAAATTA
1 TA-TATA--AATAAATAAATTA
14686875 AATAAAGACA
Statistics
Matches: 38, Mismatches: 8, Indels: 5
0.75 0.16 0.10
Matches are distributed among these distances:
28 17 0.45
29 11 0.29
31 10 0.26
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:14686874 original size:31 final size:28
Alignment explanation
Indices: 14686808--14686875 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
14686798 ATATAAATAT
**
14686808 ATAAATTAATTATAAAGTATATTATTAA
1 ATAAATTAATTATAAAGTATATTAAGAA
* *
14686836 ATTAATTACATTATAAATATTATATTAAGAA
1 ATAAATTA-ATTAT-AA-AGTATATTAAGAA
14686867 ATAAATTAA
1 ATAAATTAA
14686876 ATAAAGACAA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 5 0.16
30 3 0.09
31 17 0.53
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
ATAAATTAATTATAAAGTATATTAAGAA
Found at i:14687097 original size:11 final size:11
Alignment explanation
Indices: 14687081--14687106 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14687071 AGAAAGAGAC
14687081 GAAACAGGGGA
1 GAAACAGGGGA
14687092 GAAACAGGGGA
1 GAAACAGGGGA
14687103 GAAA
1 GAAA
14687107 GAAAGAAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.08, G:0.42, T:0.00
Consensus pattern (11 bp):
GAAACAGGGGA
Found at i:14688204 original size:37 final size:39
Alignment explanation
Indices: 14688145--14688240 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
14688135 CGGATAGATT
* * * *
14688145 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
14688182 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
14688221 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
14688241 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:14697462 original size:18 final size:17
Alignment explanation
Indices: 14697439--14697472 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14697429 ATTACATCCA
14697439 AATAAAACTCTCAATTAT
1 AATAAAACTCT-AATTAT
*
14697457 AATAAAATTCTAATTA
1 AATAAAACTCTAATTA
14697473 ATCCAAACAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
AATAAAACTCTAATTAT
Found at i:14703830 original size:40 final size:40
Alignment explanation
Indices: 14703775--14703992 Score: 289
Period size: 40 Copynumber: 5.5 Consensus size: 40
14703765 CGGACGATAA
* * *
14703775 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAATTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
14703815 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
14703855 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
14703895 CCAGGCTAAGTCTCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
14703935 CCGGGCTATGTCCCGAAGGTATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
14703975 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
14703993 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 16 0.10
40 143 0.90
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:14711931 original size:40 final size:40
Alignment explanation
Indices: 14711875--14712052 Score: 236
Period size: 40 Copynumber: 4.5 Consensus size: 40
14711865 CGGACGATAA
* * *
14711875 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAATTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
14711915 CCGGGCTAAGTGCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
14711955 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
14711995 CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
14712035 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
14712053 TACTTGGCTT
Statistics
Matches: 124, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
39 16 0.13
40 108 0.87
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:14717556 original size:12 final size:12
Alignment explanation
Indices: 14717539--14717564 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14717529 AATAATAGTT
14717539 TTCAGTCAAGCA
1 TTCAGTCAAGCA
14717551 TTCAGTCAAGCA
1 TTCAGTCAAGCA
14717563 TT
1 TT
14717565 TAGATGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (12 bp):
TTCAGTCAAGCA
Found at i:14719646 original size:40 final size:40
Alignment explanation
Indices: 14719591--14719808 Score: 316
Period size: 40 Copynumber: 5.5 Consensus size: 40
14719581 CGGACGATAA
* * *
14719591 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAATTACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
14719631 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
14719671 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
14719711 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
14719751 CCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
14719791 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
14719809 TACTTGGCTT
Statistics
Matches: 164, Mismatches: 12, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
39 16 0.10
40 148 0.90
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:14725974 original size:38 final size:38
Alignment explanation
Indices: 14725926--14726004 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
14725916 TTTCCCAAAC
* **
14725926 ATATAAGGGTTCACATAAATATAAGGTTTTGCATACAT
1 ATATAAGGGTTCACATAAATATAAGGGTTCACATACAT
* ** *
14725964 ATATAGGGGTTTGCATACATATAAGGGTTCACATACAT
1 ATATAAGGGTTCACATAAATATAAGGGTTCACATACAT
14726002 ATA
1 ATA
14726005 AGAGTTTGCT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.38, C:0.11, G:0.18, T:0.33
Consensus pattern (38 bp):
ATATAAGGGTTCACATAAATATAAGGGTTCACATACAT
Found at i:14725988 original size:56 final size:55
Alignment explanation
Indices: 14725924--14726077 Score: 184
Period size: 56 Copynumber: 2.7 Consensus size: 55
14725914 TATTTCCCAA
**
14725924 ACATATAAGGGTTCACATAAATATAAGGTTTTGCATACATATATAGGGGTTTGCAT
1 ACATATAAGGGTTCACATAAATATAAGG-TTTGCATACATATATAGGGGTTCACAT
* *
14725980 ACATATAAGGGTTCACATACATATAAGAGTTTGCTTACATATATAGGGGTTCACAT
1 ACATATAAGGGTTCACATAAATATAAG-GTTTGCATACATATATAGGGGTTCACAT
* * *
14726036 ACATATGAGGATTTC-CATACATATATAGGGGTTTGCATACAT
1 ACATATAAGG-GTTCACATA-A-ATATA-AGGTTTGCATACAT
14726078 TGCATACATA
Statistics
Matches: 84, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
56 63 0.75
57 4 0.05
58 16 0.19
59 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (55 bp):
ACATATAAGGGTTCACATAAATATAAGGTTTGCATACATATATAGGGGTTCACAT
Found at i:14726018 original size:18 final size:18
Alignment explanation
Indices: 14725924--14726077 Score: 137
Period size: 18 Copynumber: 8.2 Consensus size: 18
14725914 TATTTCCCAA
**
14725924 ACATATAAGGGTTCACAT
1 ACATATAAGGGTTTGCAT
* *
14725942 AAATATAAGGTTTTGCAT
1 ACATATAAGGGTTTGCAT
14725960 ACATATATAGGGGTTTGCAT
1 ACATATA-A-GGGTTTGCAT
**
14725980 ACATATAAGGGTTCACAT
1 ACATATAAGGGTTTGCAT
* *
14725998 ACATATAAGAGTTTGCTT
1 ACATATAAGGGTTTGCAT
**
14726016 ACATATATAGGGGTTCACAT
1 ACATATA-A-GGGTTTGCAT
* * *
14726036 ACATATGAGGATTTCCAT
1 ACATATAAGGGTTTGCAT
14726054 ACATATATAGGGGTTTGCAT
1 ACATATA-A-GGGTTTGCAT
14726074 ACAT
1 ACAT
14726078 TGCATACATA
Statistics
Matches: 107, Mismatches: 23, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
18 62 0.58
19 5 0.05
20 40 0.37
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (18 bp):
ACATATAAGGGTTTGCAT
Found at i:14726024 original size:38 final size:37
Alignment explanation
Indices: 14725957--14726077 Score: 138
Period size: 38 Copynumber: 3.2 Consensus size: 37
14725947 TAAGGTTTTG
14725957 CATACATATATAGGGGTTTGCATACATATA-A-GGGTTCA
1 CATACATATA-A--GGTTTGCATACATATATAGGGGTTCA
*
14725995 CATACATATAAGAGTTTGCTTACATATATAGGGGTTCA
1 CATACATATAAG-GTTTGCATACATATATAGGGGTTCA
* * **
14726033 CATACATATGAGGATTTCCATACATATATAGGGGTTTG
1 CATACATATAAGG-TTTGCATACATATATAGGGGTTCA
14726071 CATACAT
1 CATACAT
14726078 TGCATACATA
Statistics
Matches: 73, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
35 1 0.01
36 14 0.19
37 3 0.04
38 55 0.75
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (37 bp):
CATACATATAAGGTTTGCATACATATATAGGGGTTCA
Found at i:14727472 original size:39 final size:39
Alignment explanation
Indices: 14727427--14727527 Score: 166
Period size: 39 Copynumber: 2.6 Consensus size: 39
14727417 GCTCTGATGA
*
14727427 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGT
*
14727466 GTTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGT
* *
14727505 GCTTCAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
14727528 AAATCACGTT
Statistics
Matches: 57, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 57 1.00
ACGTcount: A:0.12, C:0.24, G:0.25, T:0.40
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCTGTTTAGCACTTATGT
Found at i:14730459 original size:46 final size:45
Alignment explanation
Indices: 14730409--14730584 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
14730399 TGGTTGAGCA
14730409 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
14730455 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
14730502 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
14730548 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
14730585 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:14730565 original size:93 final size:93
Alignment explanation
Indices: 14730406--14730576 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
14730396 GGATGGTTGA
* *
14730406 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14730471 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
14730499 GCATCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
14730564 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
14730577 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:14737910 original size:23 final size:24
Alignment explanation
Indices: 14737866--14737910 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
14737856 AAGTAATAAC
*
14737866 TAGTAATTTTTCTTTTCTTGGAAA
1 TAGTAATTTTTCTTTTCATGGAAA
* *
14737890 TAGT-ATTTTTGTTTTGATGGA
1 TAGTAATTTTTCTTTTCATGGA
14737911 TCTAGGGTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 14 0.78
24 4 0.22
ACGTcount: A:0.22, C:0.04, G:0.18, T:0.56
Consensus pattern (24 bp):
TAGTAATTTTTCTTTTCATGGAAA
Found at i:14741558 original size:46 final size:49
Alignment explanation
Indices: 14741482--14741621 Score: 135
Period size: 53 Copynumber: 2.8 Consensus size: 49
14741472 ATTGTCACAT
** * * *
14741482 ATCACACACCGAACCCATAGT-CCTGCTATGGTCTTACACGG-ATC-A-C
1 ATCACACACCGATGCCATA-TCCCAGATATGGTCTTATACGGAATCAATC
*
14741528 ATCACACACCGATGCCATATCCCAGATATGGTCTTATACGGAATCATATT
1 ATCACACACCGATGCCATATCCCAGATATGGTCTTATACGGAATCA-ATC
* *
14741578 ATCATGTCACACCGATGCCATAGCCCAGTTATGGTCTTATACGG
1 ATCA---CACACCGATGCCATATCCCAGATATGGTCTTATACGG
14741622 GAACACATAT
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
45 1 0.01
46 34 0.44
47 3 0.04
49 1 0.01
50 4 0.05
53 35 0.45
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (49 bp):
ATCACACACCGATGCCATATCCCAGATATGGTCTTATACGGAATCAATC
Found at i:14741611 original size:53 final size:53
Alignment explanation
Indices: 14741523--14741688 Score: 167
Period size: 52 Copynumber: 3.1 Consensus size: 53
14741513 TCTTACACGG
* * *
14741523 ATCACATCACACACCGATGCCATATCCCAGATATGGTCTTATAC-GGAA-TCAT
1 ATCACAT-TCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
* *
14741575 ATTATCATGTCACACCGATGCCATAGCCCAGTTATGGTCTTATACGGGAACACAT
1 ATCA-CAT-TCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
* * * * * * **
14741630 ATCACATT-GCACCAATGCCATAGCCTAGCTATGGTCTTAAATGGGCGCACAT
1 ATCACATTCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
14741682 ATCACAT
1 ATCACAT
14741689 CTTTTCCGTT
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
52 46 0.48
53 37 0.39
54 7 0.07
55 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (53 bp):
ATCACATTCACACCGATGCCATAGCCCAGATATGGTCTTATACGGGAACACAT
Found at i:14741663 original size:52 final size:50
Alignment explanation
Indices: 14741477--14741668 Score: 164
Period size: 46 Copynumber: 3.9 Consensus size: 50
14741467 TGCACATTGT
** * * * *
14741477 CACATATCACA--CACCGAACCCATAGTCCTGCTATGGTCTTACACGGAT
1 CACATATCACATTCACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
* *
14741525 CAC--ATCACA--CACCGATGCCATATCCCAGATATGGTCTTATACGGAA
1 CACATATCACATTCACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
* * *
14741571 -TCATATTATCATGTCACACCGATGCCATAGCCCAGTTATGGTCTTATACGGGAA
1 CACATATCA-CAT-T--CACCGATGCCATAGCCCAGCTATGGTCTTATAC-GGAA
* *
14741625 CACATATCACATTGCACCAATGCCATAGCCTAGCTATGGTCTTA
1 CACATATCACATT-CACCGATGCCATAGCCCAGCTATGGTCTTA
14741669 AATGGGCGCA
Statistics
Matches: 116, Mismatches: 18, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
45 1 0.01
46 35 0.30
47 3 0.03
48 5 0.04
52 27 0.23
53 32 0.28
54 7 0.06
55 6 0.05
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.26
Consensus pattern (50 bp):
CACATATCACATTCACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA
Found at i:14751216 original size:111 final size:113
Alignment explanation
Indices: 14751072--14751283 Score: 356
Period size: 111 Copynumber: 1.9 Consensus size: 113
14751062 CTTTTTATCA
* *
14751072 AATTAAGCATTCAAACGATAAATTTTCTTAACGAAAATTTCAAACAAACATATTATCATGCTTTA
1 AATTAAGCATTCAAACGATAAAATTTCTTAACGAAAATTTCAAACAAACATATTATCATGCTGTA
14751137 GACATT-AA-AATAATAAAATAATTATTATAACCTCAGATTTGTGGTC
66 GACATTAAATAATAATAAAATAATTATTATAACCTCAGATTTGTGGTC
* *
14751183 AATTAAGGATTCAAATGATAAAATTTCTTAACGAAAATTTCAAACAAACATATTATCATGCTGTA
1 AATTAAGCATTCAAACGATAAAATTTCTTAACGAAAATTTCAAACAAACATATTATCATGCTGTA
*
14751248 GACATTAAAATAATAATAAAATAATTATTATGACCT
66 GACATT-AAATAATAATAAAATAATTATTATAACCT
14751284 TGGATTTATG
Statistics
Matches: 93, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
111 67 0.72
113 2 0.02
114 24 0.26
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.33
Consensus pattern (113 bp):
AATTAAGCATTCAAACGATAAAATTTCTTAACGAAAATTTCAAACAAACATATTATCATGCTGTA
GACATTAAATAATAATAAAATAATTATTATAACCTCAGATTTGTGGTC
Found at i:14756317 original size:96 final size:96
Alignment explanation
Indices: 14756140--14756317 Score: 277
Period size: 96 Copynumber: 1.9 Consensus size: 96
14756130 TATTCTCTTG
* * * *
14756140 TTGGATATTTAATTGGACATTGGAAACCCTTATGATCTTTTGAACTACACCAATAACATTGCACA
1 TTGGATATTTAATTGGACATCGAAAACCCTCATGATCTTTTAAACTACACCAATAACATTGCACA
* *
14756205 AAAGGTGATAGCTCAATATTTTTCTCTCTAT
66 AAAGGTGAGAGATCAATATTTTTCTCTCTAT
*
14756236 TTGGATATTTAATTGGACATCGAAAACCCTCATGATCTTTTAAACTACACCAATAACATTTCACA
1 TTGGATATTTAATTGGACATCGAAAACCCTCATGATCTTTTAAACTACACCAATAACATTGCACA
14756301 ACAA-GTGAGAGATCAAT
66 A-AAGGTGAGAGATCAAT
14756318 CGAACTGGTC
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
96 72 0.97
97 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (96 bp):
TTGGATATTTAATTGGACATCGAAAACCCTCATGATCTTTTAAACTACACCAATAACATTGCACA
AAAGGTGAGAGATCAATATTTTTCTCTCTAT
Found at i:14756947 original size:19 final size:20
Alignment explanation
Indices: 14756925--14756967 Score: 54
Period size: 18 Copynumber: 2.2 Consensus size: 20
14756915 AATTTTTTAT
14756925 TTTTTCTTTTCTTTTCGTA-
1 TTTTTCTTTTCTTTTCGTAC
* *
14756944 -TTTTCTTTTTTTTTTGTAC
1 TTTTTCTTTTCTTTTCGTAC
14756963 TTTTT
1 TTTTT
14756968 GATCACTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 16 0.80
20 4 0.20
ACGTcount: A:0.05, C:0.12, G:0.05, T:0.79
Consensus pattern (20 bp):
TTTTTCTTTTCTTTTCGTAC
Found at i:14756947 original size:20 final size:17
Alignment explanation
Indices: 14756917--14756967 Score: 50
Period size: 20 Copynumber: 2.8 Consensus size: 17
14756907 AACCCACAAA
14756917 TTTTT-TATTTTTTCTTT
1 TTTTTGTATTTTTT-TTT
14756934 TCTTTTCGTATTTTCTTTTT
1 T-TTTT-GTATTTT-TTTTT
14756954 TTTTTGTACTTTTT
1 TTTTTGTA-TTTTT
14756968 GATCACTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 1 0.03
18 8 0.28
19 8 0.28
20 10 0.34
21 2 0.07
ACGTcount: A:0.06, C:0.10, G:0.04, T:0.80
Consensus pattern (17 bp):
TTTTTGTATTTTTTTTT
Found at i:14759471 original size:19 final size:18
Alignment explanation
Indices: 14759449--14759500 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
14759439 ACTTTATAAA
*
14759449 ATAAATATAAATTGTTTTT
1 ATAAATATAAATT-TATTT
*
14759468 ATAATATATATATTTATTT
1 ATAA-ATATAAATTTATTT
*
14759487 AT-AATATAATTTTA
1 ATAAATATAAATTTA
14759501 AAACTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 9 0.32
18 1 0.04
19 10 0.36
20 8 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATAAATATAAATTTATTT
Found at i:14760464 original size:22 final size:22
Alignment explanation
Indices: 14760436--14760478 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
14760426 TAAGTAGTTT
14760436 TTGAATTATTGGCATTGCATGA
1 TTGAATTATTGGCATTGCATGA
14760458 TTGAATTATTGGCATTGCATG
1 TTGAATTATTGGCATTGCATG
14760479 CTTATCCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.26, C:0.09, G:0.23, T:0.42
Consensus pattern (22 bp):
TTGAATTATTGGCATTGCATGA
Done.