Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 47 of 259
Found at i:14765088 original size:3 final size:3
Alignment explanation
Indices: 14765080--14765108 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14765070 TAGGTGATAA
14765080 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GA
14765109 AATGCATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (3 bp):
GAT
Found at i:14793829 original size:19 final size:19
Alignment explanation
Indices: 14793805--14793844 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14793795 AGCTCCCATG
14793805 TAGCTCCACACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
***
14793824 TAGCTCGGGACCAGCTCAT
1 TAGCTCCACACCAGCTCAT
14793843 TA
1 TA
14793845 TCAGCTCACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.35, G:0.17, T:0.23
Consensus pattern (19 bp):
TAGCTCCACACCAGCTCAT
Found at i:14795104 original size:14 final size:14
Alignment explanation
Indices: 14795082--14795129 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
14795072 ACCTAAACCG
*
14795082 ACCAATTTGTTCAT
1 ACCATTTTGTTCAT
*
14795096 ACCATTTTGTTCTT
1 ACCATTTTGTTCAT
* * *
14795110 ACCCTTTCGTTCCT
1 ACCATTTTGTTCAT
14795124 ACCATT
1 ACCATT
14795130 CCGTTTGTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.46
Consensus pattern (14 bp):
ACCATTTTGTTCAT
Found at i:14796233 original size:31 final size:32
Alignment explanation
Indices: 14796198--14796259 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 32
14796188 TAATTTAATT
* *
14796198 TTTTTTATTTTTCAT-ATTTTTTAAAATTTTA
1 TTTTTTATTTTTAATAATTATTTAAAATTTTA
*
14796229 TTTTTTATTTTTAATAATTATTTAAACTTTT
1 TTTTTTATTTTTAATAATTATTTAAAATTTT
14796260 TAGATTTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 14 0.52
32 13 0.48
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.69
Consensus pattern (32 bp):
TTTTTTATTTTTAATAATTATTTAAAATTTTA
Found at i:14796233 original size:32 final size:33
Alignment explanation
Indices: 14796183--14796259 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 33
14796173 TATTTTCATC
* * *
14796183 TTTTATAATTTAATTTTTTTTATTTTTCAT-ATT
1 TTTTAAAATTTTA-TTTTTTTATTTTTAATAATT
14796216 TTTTAAAATTTTA-TTTTTTATTTTTAATAATT
1 TTTTAAAATTTTATTTTTTTATTTTTAATAATT
* *
14796248 ATTTAAACTTTT
1 TTTTAAAATTTT
14796260 TAGATTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
31 14 0.37
32 13 0.34
33 11 0.29
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.69
Consensus pattern (33 bp):
TTTTAAAATTTTATTTTTTTATTTTTAATAATT
Found at i:14796340 original size:10 final size:10
Alignment explanation
Indices: 14796325--14796349 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14796315 TATAAATTTC
14796325 AAAATATTGA
1 AAAATATTGA
14796335 AAAATATTGA
1 AAAATATTGA
14796345 AAAAT
1 AAAAT
14796350 CTGAAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (10 bp):
AAAATATTGA
Found at i:14797020 original size:37 final size:37
Alignment explanation
Indices: 14796977--14797051 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
14796967 TCGTGCCTGT
14796977 CAGATAAGCGCAAATGGTCGCGCTTGACAGGTAGGCG
1 CAGATAAGCGCAAATGGTCGCGCTTGACAGGTAGGCG
*
14797014 CAGATAAGCGCAACTGGTCGCGCTTGACAGGTAGGCG
1 CAGATAAGCGCAAATGGTCGCGCTTGACAGGTAGGCG
14797051 C
1 C
14797052 CACTGCCTGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.24, G:0.35, T:0.16
Consensus pattern (37 bp):
CAGATAAGCGCAAATGGTCGCGCTTGACAGGTAGGCG
Found at i:14797238 original size:3 final size:3
Alignment explanation
Indices: 14797225--14797272 Score: 71
Period size: 3 Copynumber: 16.3 Consensus size: 3
14797215 GAAGGAAAGG
* *
14797225 AGA AGA A-A AGA AGA GGA AGA AGA AGA AGA AAA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
14797272 A
1 A
14797273 AAGGTAATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:14797510 original size:59 final size:59
Alignment explanation
Indices: 14797430--14797557 Score: 204
Period size: 59 Copynumber: 2.2 Consensus size: 59
14797420 TAAATTTTTT
* *
14797430 TTGTTT-TTTATAATTATTTTAAAATTAATTTGTTAGTAATTTAGGATAATGTTATAAA
1 TTGTTTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATAATATTATAAA
* *
14797488 TTGTTTGTTTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTATATTATAAA
1 TTGTTTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATAATATTATAAA
14797547 TTGTTGTGTTT
1 TTGTT-TGTTT
14797558 CGTTTAGTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
58 6 0.09
59 53 0.83
60 5 0.08
ACGTcount: A:0.33, C:0.00, G:0.12, T:0.55
Consensus pattern (59 bp):
TTGTTTGTTTATAATTATTTTAAAATTAATTTATTAGTAATTTAGGATAATATTATAAA
Found at i:14797643 original size:31 final size:31
Alignment explanation
Indices: 14797606--14797704 Score: 100
Period size: 31 Copynumber: 3.3 Consensus size: 31
14797596 TTTTGTTAAA
14797606 TATTTTGTTAGTAATTTATTATAAATTGTTG
1 TATTTTGTTAGTAATTTATTATAAATTGTTG
* * * *
14797637 TGTTTTGTGAGT-TTTTAGTAATATAAA---AT-
1 TATTTTGTTAGTAATTTA-T--TATAAATTGTTG
14797666 TATTTTGTTAGTAATTTATTATAAATTGTTG
1 TATTTTGTTAGTAATTTATTATAAATTGTTG
14797697 TATTTTGT
1 TATTTTGT
14797705 GAGTTTTTAG
Statistics
Matches: 52, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
27 6 0.12
29 11 0.21
30 10 0.19
31 19 0.37
33 6 0.12
ACGTcount: A:0.28, C:0.00, G:0.14, T:0.58
Consensus pattern (31 bp):
TATTTTGTTAGTAATTTATTATAAATTGTTG
Found at i:14797662 original size:33 final size:33
Alignment explanation
Indices: 14797625--14797725 Score: 99
Period size: 33 Copynumber: 3.2 Consensus size: 33
14797615 AGTAATTTAT
*
14797625 TATAAATTGTTGTGTTTTGTGAGTTTTTAGTAA
1 TATAAATTGTTGTATTTTGTGAGTTTTTAGTAA
* * *
14797658 TATAAA---AT-TATTTTGTTAGTAATTTA-T--
1 TATAAATTGTTGTATTTTGTGAGT-TTTTAGTAA
14797685 TATAAATTGTTGTATTTTGTGAGTTTTTAGTAA
1 TATAAATTGTTGTATTTTGTGAGTTTTTAGTAA
*
14797718 TGTAAATT
1 TATAAATT
14797726 AAAAATAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 16
0.68 0.11 0.21
Matches are distributed among these distances:
27 6 0.12
29 11 0.21
30 10 0.19
31 12 0.23
33 13 0.25
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.54
Consensus pattern (33 bp):
TATAAATTGTTGTATTTTGTGAGTTTTTAGTAA
Found at i:14797675 original size:60 final size:60
Alignment explanation
Indices: 14797606--14797723 Score: 218
Period size: 60 Copynumber: 2.0 Consensus size: 60
14797596 TTTTGTTAAA
*
14797606 TATTTTGTTAGTAATTTATTATAAATTGTTGTGTTTTGTGAGTTTTTAGTAATATAAAAT
1 TATTTTGTTAGTAATTTATTATAAATTGTTGTATTTTGTGAGTTTTTAGTAATATAAAAT
*
14797666 TATTTTGTTAGTAATTTATTATAAATTGTTGTATTTTGTGAGTTTTTAGTAATGTAAA
1 TATTTTGTTAGTAATTTATTATAAATTGTTGTATTTTGTGAGTTTTTAGTAATATAAA
14797724 TTAAAAATAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 56 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (60 bp):
TATTTTGTTAGTAATTTATTATAAATTGTTGTATTTTGTGAGTTTTTAGTAATATAAAAT
Found at i:14800094 original size:66 final size:66
Alignment explanation
Indices: 14800018--14800146 Score: 179
Period size: 66 Copynumber: 2.0 Consensus size: 66
14800008 CTCATTTCTG
* *
14800018 CTTGTATCCACCGCCATACTCCACTCCTCCTGACCTGTATCCACTGC-CATACTCCACTCCTCCT
1 CTTGTATCCACCGCCATACTCCACTCCTCCCGACCCGTATCCACTGCTC-TACTCCACTCCTCCT
14800082 GA
65 GA
** * * *
14800084 CTTGTATCCACCGCTGTACTCTATTCCTCCCGGCCCGTATCCACTGCTCTACTCCACTCCTCC
1 CTTGTATCCACCGCCATACTCCACTCCTCCCGACCCGTATCCACTGCTCTACTCCACTCCTCC
14800147 CGGCTCAAGT
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 54 0.98
67 1 0.02
ACGTcount: A:0.16, C:0.46, G:0.10, T:0.29
Consensus pattern (66 bp):
CTTGTATCCACCGCCATACTCCACTCCTCCCGACCCGTATCCACTGCTCTACTCCACTCCTCCTG
A
Found at i:14800150 original size:33 final size:33
Alignment explanation
Indices: 14800020--14800148 Score: 143
Period size: 33 Copynumber: 3.9 Consensus size: 33
14800010 CATTTCTGCT
*
14800020 TGTATCCACCGCCATACTCCACTCCTCCTGACC
1 TGTATCCACCGCCATACTCCACTCCTCCCGACC
* * *
14800053 TGTATCCACTGCCATACTCCACTCCTCCTGACT
1 TGTATCCACCGCCATACTCCACTCCTCCCGACC
** * * *
14800086 TGTATCCACCGCTGTACTCTATTCCTCCCGGCC
1 TGTATCCACCGCCATACTCCACTCCTCCCGACC
* *
14800119 CGTATCCACTGCTC-TACTCCACTCCTCCCG
1 TGTATCCACCGC-CATACTCCACTCCTCCCG
14800149 GCTCAAGTTC
Statistics
Matches: 80, Mismatches: 15, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
33 80 1.00
ACGTcount: A:0.16, C:0.46, G:0.11, T:0.28
Consensus pattern (33 bp):
TGTATCCACCGCCATACTCCACTCCTCCCGACC
Found at i:14806464 original size:15 final size:15
Alignment explanation
Indices: 14806431--14806468 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
14806421 ACATATAACA
*
14806431 ATATAT-ATTATTAT
1 ATATATAATTACTAT
14806445 ATATATAATTACTAT
1 ATATATAATTACTAT
*
14806460 TTATATAAT
1 ATATATAAT
14806469 ATATATAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
ATATATAATTACTAT
Found at i:14811418 original size:11 final size:10
Alignment explanation
Indices: 14811402--14811439 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
14811392 TTTTGTTTAA
14811402 TTAATTAAAGG
1 TTAATT-AAGG
14811413 TTAATTAA-G
1 TTAATTAAGG
*
14811422 TTAATTAAGA
1 TTAATTAAGG
14811432 TTAATTAA
1 TTAATTAA
14811440 AAGTTAAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
9 9 0.36
10 10 0.40
11 6 0.24
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (10 bp):
TTAATTAAGG
Found at i:14811420 original size:19 final size:19
Alignment explanation
Indices: 14811398--14811439 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
14811388 TATGTTTTGT
*
14811398 TTAA-TTAATTAAAGGTTAA
1 TTAAGTTAATT-AAGATTAA
14811417 TTAAGTTAATTAAGATTAA
1 TTAAGTTAATTAAGATTAA
14811436 TTAA
1 TTAA
14811440 AAGTTAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.43
Consensus pattern (19 bp):
TTAAGTTAATTAAGATTAA
Found at i:14823331 original size:29 final size:32
Alignment explanation
Indices: 14823272--14823330 Score: 79
Period size: 30 Copynumber: 1.9 Consensus size: 32
14823262 TTTATTCAAA
14823272 ATTATTTTTTGTTATTCTATTTACTAAAAACC
1 ATTATTTTTTGTTATTCTATTTACTAAAAACC
*
14823304 ATTATTTGTTT-TT-TT-TATTTTCTAAAA
1 ATTATTT-TTTGTTATTCTATTTACTAAAA
14823331 CTTATAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
30 11 0.44
31 2 0.08
32 9 0.36
33 3 0.12
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.59
Consensus pattern (32 bp):
ATTATTTTTTGTTATTCTATTTACTAAAAACC
Found at i:14823495 original size:9 final size:9
Alignment explanation
Indices: 14823469--14823515 Score: 51
Period size: 9 Copynumber: 5.3 Consensus size: 9
14823459 ATACAGAAAT
*
14823469 AAAGTTTAA
1 AAAGTCTAA
14823478 AAA-TCTAA
1 AAAGTCTAA
*
14823486 ACAGTCTAA
1 AAAGTCTAA
14823495 AAAGTCTAA
1 AAAGTCTAA
* *
14823504 AGAGTCCAA
1 AAAGTCTAA
14823513 AAA
1 AAA
14823516 TTTACAGAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 6 0.19
9 25 0.81
ACGTcount: A:0.55, C:0.13, G:0.11, T:0.21
Consensus pattern (9 bp):
AAAGTCTAA
Found at i:14823502 original size:18 final size:17
Alignment explanation
Indices: 14823475--14823516 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
14823465 AAATAAAGTT
14823475 TAAAAATCTAAACAGTC
1 TAAAAATCTAAACAGTC
*
14823492 TAAAAAGTCTAAAGAGTC
1 TAAAAA-TCTAAACAGTC
*
14823510 CAAAAAT
1 TAAAAAT
14823517 TTACAGAACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (17 bp):
TAAAAATCTAAACAGTC
Found at i:14824710 original size:21 final size:22
Alignment explanation
Indices: 14824659--14824710 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
14824649 GGCTAGAAGG
* *
14824659 AGAACAAAATTGAATTGAAGAA
1 AGAAAAAAATTAAATTGAAGAA
*
14824681 A-AAACAAATTAAATTGAA-AA
1 AGAAAAAAATTAAATTGAAGAA
14824701 AGAAAAAAAT
1 AGAAAAAAAT
14824711 AGATTGCACA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
20 3 0.12
21 21 0.84
22 1 0.04
ACGTcount: A:0.67, C:0.04, G:0.12, T:0.17
Consensus pattern (22 bp):
AGAAAAAAATTAAATTGAAGAA
Found at i:14827551 original size:15 final size:16
Alignment explanation
Indices: 14827531--14827561 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14827521 TATAACTTTG
14827531 ACAAAT-AAAATAAAA
1 ACAAATAAAAATAAAA
14827546 ACAAATAAAAATAAAA
1 ACAAATAAAAATAAAA
14827562 TAGAGTTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.13
Consensus pattern (16 bp):
ACAAATAAAAATAAAA
Found at i:14841488 original size:129 final size:129
Alignment explanation
Indices: 14841258--14841514 Score: 451
Period size: 129 Copynumber: 2.0 Consensus size: 129
14841248 TCATTGTAAG
*
14841258 AATACGAGGAATACGGGTCGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
1 AATACGAGGAATACGGGTAGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
14841323 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAAC
66 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAAC
*
14841387 AATACGAGGAATACGGGTAGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCG
1 AATACGAGGAATACGGGTAGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
* * * * *
14841452 CTCTCTACCAGATCGGTATAACTATACGAATTATAACAAGGGTTATATCGTTGTCTCCCATAA
66 CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAA
14841515 GGGCCATAAT
Statistics
Matches: 121, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 121 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (129 bp):
AATACGAGGAATACGGGTAGTAAGGATCATTTGTCGGGTAACCACCTTCCCATCCTTTCTTGTCA
CTCTCTACCAGACCGGCATAACTATACGAATTATAACAAGGATCATATCATTGTCTCCCATAAC
Found at i:14868437 original size:22 final size:21
Alignment explanation
Indices: 14868407--14868472 Score: 64
Period size: 19 Copynumber: 3.2 Consensus size: 21
14868397 TACAAATTAA
14868407 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
14868429 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
* *
14868450 ATCT--AAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
14868469 ATCT
1 ATCT
14868473 AACATTGTAT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
19 19 0.46
21 10 0.24
22 12 0.29
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:14868459 original size:19 final size:19
Alignment explanation
Indices: 14868424--14868576 Score: 242
Period size: 19 Copynumber: 8.2 Consensus size: 19
14868414 AGATTACAAG
14868424 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
14868445 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
14868464 ATCATATCTAACATTG--T
1 ATCATATCTAAGATTGCAT
*
14868481 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
14868500 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14868519 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
14868536 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14868555 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
14868574 ATC
1 ATC
14868577 CTTAAAGATT
Statistics
Matches: 125, Mismatches: 3, Indels: 10
0.91 0.02 0.07
Matches are distributed among these distances:
17 33 0.26
19 83 0.66
20 1 0.01
21 8 0.06
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:14868488 original size:36 final size:37
Alignment explanation
Indices: 14868424--14868576 Score: 222
Period size: 36 Copynumber: 4.1 Consensus size: 37
14868414 AGATTACAAG
14868424 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
* *
14868464 ATCATATCTAACATTG-TATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
14868500 ATCATATCTAAGATTGCATATCATATCTAAGATTG--T
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCAT
14868536 ATCATATCTAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTG-ATATCATATCTAAGATTGCAT
14868574 ATC
1 ATC
14868577 CTTAAAGATT
Statistics
Matches: 105, Mismatches: 4, Indels: 10
0.88 0.03 0.08
Matches are distributed among these distances:
36 70 0.67
38 26 0.25
39 1 0.01
40 8 0.08
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:14868510 original size:55 final size:55
Alignment explanation
Indices: 14868424--14868576 Score: 270
Period size: 55 Copynumber: 2.7 Consensus size: 55
14868414 AGATTACAAG
14868424 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
1 ATCATATC-T-AAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
* *
14868481 ATCATATCTAATATTGCATATCATATCTAAGATTGCATATCATATCTAAGATTGT
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
14868536 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATC
14868577 CTTAAAGATT
Statistics
Matches: 93, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
55 84 0.90
56 1 0.01
57 8 0.09
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (55 bp):
ATCATATCTAAGATTGCATATCATATCTAAGATTGCATATCATATCTAACATTGT
Found at i:14874262 original size:47 final size:47
Alignment explanation
Indices: 14874191--14874688 Score: 845
Period size: 47 Copynumber: 10.6 Consensus size: 47
14874181 TGCCTTCGGA
* * * * * *
14874191 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14874238 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14874284 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14874331 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14874378 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14874425 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14874472 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14874519 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14874566 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14874615 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14874662 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
14874689 TATTCAAATA
Statistics
Matches: 427, Mismatches: 21, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
46 44 0.10
47 338 0.79
49 45 0.11
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14878071 original size:16 final size:17
Alignment explanation
Indices: 14878045--14878078 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14878035 CTCAAATGAC
*
14878045 CTTGATAAACCTTATTT
1 CTTGATAAACCTCATTT
14878062 CTTG-TAAACCTCATTT
1 CTTGATAAACCTCATTT
14878078 C
1 C
14878079 ATCAGTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (17 bp):
CTTGATAAACCTCATTT
Found at i:14902578 original size:50 final size:50
Alignment explanation
Indices: 14902513--14902752 Score: 248
Period size: 50 Copynumber: 4.8 Consensus size: 50
14902503 ACCGAAGCTC
* * *
14902513 TCTGGTACGCATAGTAGCCTACATTTAGTACTACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
* * * *
14902563 TCTGGTACATGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
* * * * * * * * *
14902613 TCAGATACACGTATTAGCCTGCACTTAGAACTACACATGTGATCGAAGCTA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCTAA-CAA
* * * * *
14902664 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCCAACAA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
* *
14902714 TTTGGTACACGTAGTAGCCTGA-ACTTAGTATTACACATG
1 TCTGGTACACGTAGTAGCCT-ACACTTAGTACTACACATG
14902753 TCTTCTCACA
Statistics
Matches: 155, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
50 115 0.74
51 40 0.26
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGCGACCTAACAA
Found at i:14909535 original size:60 final size:62
Alignment explanation
Indices: 14909431--14909550 Score: 156
Period size: 60 Copynumber: 2.0 Consensus size: 62
14909421 CTATTCAAAA
*
14909431 ATCAGAGTTAACTGGGCTTTAGCACATATCAATATTAATCTGGGCCATAGCCCT-TTACAGT
1 ATCAGAGTTAACTGGGCTTTAGCACATATCAATATCAATCTGGGCCATAGCCCTATTACAGT
* * * * *
14909492 ATCAGAG-TATACTGGGC-TTAGCCCATATCAGTGTCAATTTGGGCCGTAGCCCTATTACA
1 ATCAGAGTTA-ACTGGGCTTTAGCACATATCAATATCAATCTGGGCCATAGCCCTATTACA
14909551 AGTTGAGATA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
60 32 0.63
61 19 0.37
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (62 bp):
ATCAGAGTTAACTGGGCTTTAGCACATATCAATATCAATCTGGGCCATAGCCCTATTACAGT
Found at i:14911083 original size:25 final size:22
Alignment explanation
Indices: 14911029--14911083 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
14911019 TTTCGGGTAG
14911029 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
14911051 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
14911076 AGGAAGAA
1 A-GAAGAA
14911084 TTCGACACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:14914084 original size:41 final size:41
Alignment explanation
Indices: 14914038--14914167 Score: 145
Period size: 41 Copynumber: 3.2 Consensus size: 41
14914028 GGTAGAAACA
*
14914038 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGTAAAAATG
1 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
* * * *** *
14914079 TCGCTATTTCCTAACC-TTTACGATGTTTATGGGAAAAATG
1 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
* * * *
14914119 CCACTATTGCCTTACCTTTTGCGGCATTTGTGGCAGAAATG
1 CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
14914160 CCGCTATT
1 CCGCTATT
14914168 GCCTGTCTTT
Statistics
Matches: 69, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
40 31 0.45
41 38 0.55
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.37
Consensus pattern (41 bp):
CCGCTATTTCCTTACCTTTTGCGGCATTTATGGCAAAAATG
Found at i:14916532 original size:43 final size:43
Alignment explanation
Indices: 14916485--14916578 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
14916475 CCCGGATAGT
* *
14916485 GTCTTACACGAAATC-GATTAACGATGCCAATGTCCCAGACATG
1 GTCTTACACGAAATCTGAAT-ACAATGCCAATGTCCCAGACATG
* * * *
14916528 GTCTTACACGTAATCTGAATCCAATGCCAATGTCCTAGACATT
1 GTCTTACACGAAATCTGAATACAATGCCAATGTCCCAGACATG
14916571 GTCTTACA
1 GTCTTACA
14916579 TGTAATCATA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
43 41 0.93
44 3 0.07
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.28
Consensus pattern (43 bp):
GTCTTACACGAAATCTGAATACAATGCCAATGTCCCAGACATG
Found at i:14916731 original size:26 final size:26
Alignment explanation
Indices: 14916701--14916750 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14916691 TTCATAGCAA
*
14916701 TTCAATGATAATAAAACATATATAAT
1 TTCAATAATAATAAAACATATATAAT
14916727 TTCAATAATAATAAAACATATATA
1 TTCAATAATAATAAAACATATATA
14916751 TGAACTTACC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.56, C:0.08, G:0.02, T:0.34
Consensus pattern (26 bp):
TTCAATAATAATAAAACATATATAAT
Found at i:14926989 original size:69 final size:68
Alignment explanation
Indices: 14926911--14927105 Score: 201
Period size: 61 Copynumber: 3.0 Consensus size: 68
14926901 TTAATAAATC
* * *
14926911 TAATATTAAATTTAATTTAATATATATCTTGATAGTATTTTTATTAATTTAATATTAAAGTGATT
1 TAATATTAAATTTAATCTAATATTTATCTTGATAGTATTTATATTAATTTAATATTAAAGTGATT
14926976 ATCT
66 AT-T
* * ** *
14926980 TAATATTAAATTTAATGTAATATTTATCTTG-TA-AATAAATATT-CTATTAAT-TT-AA-T-A-
1 TAATATTAAATTTAATCTAATATTTATCTTGATAGTATTTATATTAAT-TTAATATTAAAGTGAT
*
14927037 GATT
65 TATT
* *
14927041 TAGTATTAAATTTAATCTAGTATTTATCTTGATAAGTA-TTATATTAATTTAATATTAAAGTGAT
1 TAATATTAAATTTAATCTAATATTTATCTTGAT-AGTATTTATATTAATTTAATATTAAAGTGAT
14927105 T
65 T
14927106 CAGTTCAATT
Statistics
Matches: 100, Mismatches: 16, Indels: 21
0.73 0.12 0.15
Matches are distributed among these distances:
61 29 0.29
62 3 0.03
63 12 0.12
64 5 0.05
65 4 0.04
66 4 0.04
67 12 0.12
68 2 0.02
69 29 0.29
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (68 bp):
TAATATTAAATTTAATCTAATATTTATCTTGATAGTATTTATATTAATTTAATATTAAAGTGATT
ATT
Found at i:14928767 original size:18 final size:19
Alignment explanation
Indices: 14928739--14928775 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
14928729 AAACCACAAA
*
14928739 CATAGCATTTGTATGTCAT
1 CATAGCATTTGTATCTCAT
14928758 CATA-CATTTGTATCTCAT
1 CATAGCATTTGTATCTCAT
14928776 ACTCATTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.27, C:0.19, G:0.11, T:0.43
Consensus pattern (19 bp):
CATAGCATTTGTATCTCAT
Found at i:14940529 original size:39 final size:40
Alignment explanation
Indices: 14940486--14940650 Score: 142
Period size: 40 Copynumber: 4.2 Consensus size: 40
14940476 GTTCAAGTGT
* * * *
14940486 CTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AATGC
1 CTTCGGGACTTAACCCGGATTATA-AAACTCACACGAATGC
* *
14940525 CTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGC
1 CTTCGGGACTTAACCCGGATTATAAAACTCACACGAATGC
* * *
14940565 CTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACGAAGGC
1 CTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAATGC
* * * *
14940605 CTTCGGGACTTAACCCGAAATTA-ATAACTCGCACAAATGC
1 CTTCGGGACTTAACCCG-GATTATAAAACTCACACGAATGC
14940645 CTTCGG
1 CTTCGG
14940651 ATCTTAGTCC
Statistics
Matches: 106, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
39 23 0.22
40 79 0.75
41 3 0.03
42 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAACCCGGATTATAAAACTCACACGAATGC
Found at i:14940572 original size:40 final size:39
Alignment explanation
Indices: 14940520--14940650 Score: 181
Period size: 40 Copynumber: 3.3 Consensus size: 39
14940510 TAACTCATAC
*
14940520 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAAAACTCGCACG
* *
14940560 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACG
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACG
* * *
14940600 AAGGCCTTCGGGACTTAACCCGAAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACG
14940640 AATGCCTTCGG
1 AATGCCTTCGG
14940651 ATCTTAGTCC
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
39 3 0.04
40 77 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACG
Found at i:14940687 original size:80 final size:78
Alignment explanation
Indices: 14940518--14940701 Score: 194
Period size: 80 Copynumber: 2.3 Consensus size: 78
14940508 AGTAACTCAT
* ** * *
14940518 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGG
1 ACAAAGCCTTCGGGACTTAACCC-GAAATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCAG
*
14940583 AATTAGTATCTCGC
65 AATTAGTATCTAGC
* **
14940597 ACGAAGGCCTTCGGGACTTAACCCGAAATTAATAACTCGCACAAATGCCTTC-GGATCTTAGTCC
1 AC-AAAGCCTTCGGGACTTAACCCGAAATTAA-AACTCGCACAAATGCCTTCGGGA-CTTAACCC
14940661 AG-ATATAGTCA-CTTAGC
63 AGAAT-TAGT-ATC-TAGC
*
14940678 ACAAAGCCTTCGGGACTTAGCCCG
1 ACAAAGCCTTCGGGACTTAACCCG
14940702 GACAGCATTC
Statistics
Matches: 89, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
79 13 0.15
80 70 0.79
81 6 0.07
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (78 bp):
ACAAAGCCTTCGGGACTTAACCCGAAATTAAAACTCGCACAAATGCCTTCGGGACTTAACCCAGA
ATTAGTATCTAGC
Found at i:14948107 original size:39 final size:39
Alignment explanation
Indices: 14948064--14948232 Score: 236
Period size: 39 Copynumber: 4.3 Consensus size: 39
14948054 GCTCCTCGTT
* *
14948064 CAAATGCCTTCGGGACATAG-CCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
14948103 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
14948142 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
14948181 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
14948220 CAAATGCCTTCGG
1 CAAATGCCTTCGG
14948233 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
38 4 0.03
39 113 0.95
40 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:14948268 original size:78 final size:78
Alignment explanation
Indices: 14948100--14948284 Score: 225
Period size: 78 Copynumber: 2.4 Consensus size: 78
14948090 ATAGTAATTC
* * * *
14948100 GCACAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCG
1 GCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCA
*
14948165 GAATTAGTATCTC
66 GAATTAGTATCTA
* * *
14948178 GCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCC
1 GCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCC
14948243 AGATATT-GTCA-CTTA
65 AGA-ATTAGT-ATC-TA
14948258 GCAC-AA-GCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGG-CTTAGCCCGGA
14948285 CATCATTCAA
Statistics
Matches: 94, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
78 60 0.64
79 25 0.27
80 9 0.10
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
GCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCA
GAATTAGTATCTA
Found at i:14948268 original size:117 final size:118
Alignment explanation
Indices: 14948064--14948284 Score: 276
Period size: 117 Copynumber: 1.9 Consensus size: 118
14948054 GCTCCTCGTT
* *
14948064 CAAATGCCTTCGGGACATAGCCGGTTATAGTAATTCGCACAAATGCCTTCGGACTTAACCCGGAT
1 CAAATGCCTTCGGGACATAGCCGGATATAGTAATTCGCACAAATGCCTTCGGACTTAACCCAGAT
*
14948129 TTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 TTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* **
14948181 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTCGGATCTTAGTCC
1 CAAATGCCTTCGGGACATAG-CCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGA-CTTAACCC
*
14948243 AGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCGGA
62 AGAT-TTAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
14948285 CATCATTCAA
Statistics
Matches: 90, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
116 7 0.08
117 50 0.56
118 26 0.29
119 7 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (118 bp):
CAAATGCCTTCGGGACATAGCCGGATATAGTAATTCGCACAAATGCCTTCGGACTTAACCCAGAT
TTAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:14955138 original size:27 final size:28
Alignment explanation
Indices: 14955096--14955166 Score: 126
Period size: 28 Copynumber: 2.6 Consensus size: 28
14955086 CCTTTAATCA
*
14955096 GGTAAAATGATTGAAATA-CCCCCATAG
1 GGTAAAATGATCGAAATACCCCCCATAG
14955123 GGTAAAATGATCGAAATACCCCCCATAG
1 GGTAAAATGATCGAAATACCCCCCATAG
14955151 GGTAAAATGATCGAAA
1 GGTAAAATGATCGAAA
14955167 CATCCCTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 17 0.40
28 25 0.60
ACGTcount: A:0.42, C:0.18, G:0.20, T:0.20
Consensus pattern (28 bp):
GGTAAAATGATCGAAATACCCCCCATAG
Found at i:14955290 original size:27 final size:27
Alignment explanation
Indices: 14955205--14955281 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
14955195 TCCCCTGTAT
*
14955205 GGTAAAATGACCATTTTGCCCTTGTGA
1 GGTAAAATGACTATTTTGCCCTTGTGA
* *
14955232 GGCAAAATGACTATTTTGCCTTTGTGA
1 GGTAAAATGACTATTTTGCCCTTGTGA
* *
14955259 GGTAAAATGATTGTTTTGCCCTT
1 GGTAAAATGACTATTTTGCCCTT
14955282 ATATGGTAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.38
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTGTGA
Found at i:14955762 original size:35 final size:35
Alignment explanation
Indices: 14955718--14955797 Score: 101
Period size: 34 Copynumber: 2.3 Consensus size: 35
14955708 TATTGAGGTG
14955718 GGCTTAGGCCCT-GACTGTTTACTGATACTAAAATA
1 GGCTTAGGCCCTAGACTG-TTACTGATACTAAAATA
* * * *
14955753 GGCTAAGG-CCTAGACTGTTACTGTTACTAATATG
1 GGCTTAGGCCCTAGACTGTTACTGATACTAAAATA
14955787 GGCTTAGGCCC
1 GGCTTAGGCCC
14955798 AGAATGTATT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
34 24 0.63
35 14 0.37
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (35 bp):
GGCTTAGGCCCTAGACTGTTACTGATACTAAAATA
Found at i:14957465 original size:31 final size:31
Alignment explanation
Indices: 14957413--14957504 Score: 130
Period size: 31 Copynumber: 2.9 Consensus size: 31
14957403 CATGGCTTGC
*
14957413 AGCCATCAGTAGCTATAATATGATCGGCACAA
1 AGCCATCAGTA-CTGTAATATGATCGGCACAA
* *
14957445 AGCCATCTGTACTGTAATATGATCGTCACAA
1 AGCCATCAGTACTGTAATATGATCGGCACAA
* *
14957476 AGCCATCAATACTGTAATATGATCTGCAC
1 AGCCATCAGTACTGTAATATGATCGGCAC
14957505 TAAGGCACTG
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 43 0.81
32 10 0.19
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.26
Consensus pattern (31 bp):
AGCCATCAGTACTGTAATATGATCGGCACAA
Found at i:14957897 original size:27 final size:26
Alignment explanation
Indices: 14957867--14957990 Score: 99
Period size: 27 Copynumber: 4.7 Consensus size: 26
14957857 CAAAATAGTC
*
14957867 ATTTTACCATACAGGGGCATTTCGGTA
1 ATTTTA-CATACAGGGGTATTTCGGTA
* *
14957894 ATTTTACACTACAAGGGTA-TTCAGTA
1 ATTTTACA-TACAGGGGTATTTCGGTA
*
14957920 ATTTTACAAATC-GAGGGTATTTCGGTA
1 ATTTTACATA-CAG-GGGTATTTCGGTA
* * *
14957947 ATTTTACAAACCGGGGGTATTTTGGTA
1 ATTTTACATA-CAGGGGTATTTCGGTA
* * *
14957974 ATCTTACAAACCGGGGT
1 ATTTTACATACAGGGGT
14957991 CTTAACGACC
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
25 1 0.01
26 28 0.34
27 52 0.63
28 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (26 bp):
ATTTTACATACAGGGGTATTTCGGTA
Found at i:14973988 original size:18 final size:18
Alignment explanation
Indices: 14973965--14974004 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
14973955 TCTCACCTAG
14973965 GGTTTCCATGTATTTTTA
1 GGTTTCCATGTATTTTTA
14973983 GGTTTCCATGTATTTTTA
1 GGTTTCCATGTATTTTTA
14974001 GGTT
1 GGTT
14974005 GAAGATGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.15, C:0.10, G:0.20, T:0.55
Consensus pattern (18 bp):
GGTTTCCATGTATTTTTA
Found at i:14979234 original size:39 final size:39
Alignment explanation
Indices: 14979118--14979235 Score: 119
Period size: 39 Copynumber: 3.0 Consensus size: 39
14979108 ATATTTTTTA
* * *
14979118 GAGTATTGTGGTATATGCTTGAATGTTAGGTGATTTTAC
1 GAGTATTGTGATATATGCTTGAATGTTAGGTGATTATAT
* * * * * * *
14979157 GAGTATTTTGACATATGCTTAAACGTCATGAGATTATAT
1 GAGTATTGTGATATATGCTTGAATGTTAGGTGATTATAT
* * *
14979196 GAGTATGGTGATATATGCTTGTATGTTAGGTGACTATAT
1 GAGTATTGTGATATATGCTTGAATGTTAGGTGATTATAT
14979235 G
1 G
14979236 TGAAACATGA
Statistics
Matches: 59, Mismatches: 20, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.27, C:0.07, G:0.25, T:0.41
Consensus pattern (39 bp):
GAGTATTGTGATATATGCTTGAATGTTAGGTGATTATAT
Found at i:14983578 original size:11 final size:10
Alignment explanation
Indices: 14983544--14983582 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
14983534 GGTTCGTTGT
14983544 GAAAAAAATC
1 GAAAAAAATC
*
14983554 CAAAAAAATC
1 GAAAAAAATC
*
14983564 GAAAAAAATTT
1 GAAAAAAA-TC
14983575 GAAAAAAA
1 GAAAAAAA
14983583 AGAAGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.72, C:0.08, G:0.08, T:0.13
Consensus pattern (10 bp):
GAAAAAAATC
Found at i:14984636 original size:12 final size:12
Alignment explanation
Indices: 14984619--14984653 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
14984609 ATGAGAAAAA
*
14984619 GAAAAATGAAATT
1 GAAAAA-GAAAGT
14984632 GAAAAAGAAAGT
1 GAAAAAGAAAGT
14984644 GAAAAAGAAA
1 GAAAAAGAAA
14984654 AAGAGAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 15 0.71
13 6 0.29
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (12 bp):
GAAAAAGAAAGT
Found at i:14984646 original size:18 final size:18
Alignment explanation
Indices: 14984612--14984667 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
14984602 AAAGAGAATG
*
14984612 AGAAAAAGAAAAATGAAAT
1 AGAAAAAG-AAAATGAAAA
* *
14984631 TGAAAAAGAAAGTGAAAA
1 AGAAAAAGAAAATGAAAA
* *
14984649 AGAAAAAGAGAAGGAAAA
1 AGAAAAAGAAAATGAAAA
14984667 A
1 A
14984668 AAAGAGATCG
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
18 23 0.77
19 7 0.23
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (18 bp):
AGAAAAAGAAAATGAAAA
Found at i:14986140 original size:30 final size:31
Alignment explanation
Indices: 14986106--14986202 Score: 110
Period size: 30 Copynumber: 3.2 Consensus size: 31
14986096 AGCTCACTCC
*
14986106 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
14986136 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
*
14986166 CAGCTCAACTTT-AGCTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
14986196 TAGCTCA
1 TAGCTCA
14986203 TTTTAGTTTA
Statistics
Matches: 52, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
30 48 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.30, G:0.14, T:0.28
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:14987706 original size:11 final size:10
Alignment explanation
Indices: 14987688--14987712 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14987678 AGTAGGATCT
14987688 AGAAAAAAAA
1 AGAAAAAAAA
14987698 AGAAAAAAAA
1 AGAAAAAAAA
14987708 AGAAA
1 AGAAA
14987713 GAGTATAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (10 bp):
AGAAAAAAAA
Found at i:14988833 original size:9 final size:10
Alignment explanation
Indices: 14988826--14988880 Score: 51
Period size: 11 Copynumber: 5.3 Consensus size: 10
14988816 AAGAGAAAAC
14988826 AAAGAAAAGA
1 AAAGAAAAGA
14988836 AAAGAAAAAGCA
1 AAAG-AAAAG-A
*
14988848 AAAGAAGA-A
1 AAAGAAAAGA
14988857 AAAGAAAATGA
1 AAAGAAAA-GA
14988868 AATA-AAAAGA
1 AA-AGAAAAGA
14988878 AAA
1 AAA
14988881 TAGAGGCAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
9 9 0.24
10 8 0.21
11 15 0.39
12 6 0.16
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:14988849 original size:21 final size:20
Alignment explanation
Indices: 14988815--14988864 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 20
14988805 ACATTCTTGT
14988815 AAAGAGAAAACAAAGAAAAG-A
1 AAAGA-AAAACAAA-AAAAGAA
*
14988836 AAAGAAAAAGCAAAAGAAGAA
1 AAAGAAAAA-CAAAAAAAGAA
14988857 AAAGAAAA
1 AAAGAAAA
14988865 TGAAATAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 8 0.31
21 18 0.69
ACGTcount: A:0.78, C:0.04, G:0.18, T:0.00
Consensus pattern (20 bp):
AAAGAAAAACAAAAAAAGAA
Found at i:14988850 original size:6 final size:5
Alignment explanation
Indices: 14988826--14988880 Score: 51
Period size: 5 Copynumber: 10.6 Consensus size: 5
14988816 AAGAGAAAAC
*
14988826 AAAGA AAAGA AAAGAA AAAGCA AAAGA AGA-A AAAGA AAATGA AATA-A
1 AAAGA AAAGA AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA AA-AGA
14988873 AAAGA AAA
1 AAAGA AAA
14988881 TAGAGGCAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
4 4 0.10
5 23 0.55
6 14 0.33
7 1 0.02
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (5 bp):
AAAGA
Found at i:14988857 original size:15 final size:14
Alignment explanation
Indices: 14988826--14988880 Score: 56
Period size: 16 Copynumber: 3.6 Consensus size: 14
14988816 AAGAGAAAAC
14988826 AAAGAAAAGAAAAGAA
1 AAAGAAAAG--AAGAA
14988842 AAAGCAAAAGAAGAA
1 AAAG-AAAAGAAGAA
*
14988857 AAAGAAAATGAAATAA
1 AAAGAAAA-G-AAGAA
14988873 AAAGAAAA
1 AAAGAAAA
14988881 TAGAGGCAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 4 0.11
15 10 0.29
16 16 0.46
17 5 0.14
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (14 bp):
AAAGAAAAGAAGAA
Found at i:14988959 original size:12 final size:12
Alignment explanation
Indices: 14988951--14988987 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
14988941 TTTGAAAAGC
14988951 AAAAAGAAAATG
1 AAAAAGAAAATG
*
14988963 AAAATGAAAATG
1 AAAAAGAAAATG
14988975 AAAAAGAAAATG
1 AAAAAGAAAATG
14988987 A
1 A
14988988 GATTGAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.73, C:0.00, G:0.16, T:0.11
Consensus pattern (12 bp):
AAAAAGAAAATG
Found at i:14988964 original size:18 final size:18
Alignment explanation
Indices: 14988951--14989012 Score: 63
Period size: 18 Copynumber: 3.5 Consensus size: 18
14988941 TTTGAAAAGC
* *
14988951 AAAAAGAAAATGAAAATG
1 AAAATGAAAAAGAAAATG
14988969 AAAATGAAAAAGAAAATG
1 AAAATGAAAAAGAAAATG
* * * *
14988987 AGATTGAAAAAGAGAACG
1 AAAATGAAAAAGAAAATG
14989005 AAAA-GAAA
1 AAAATGAAA
14989013 TTTGAGAGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
17 4 0.11
18 32 0.89
ACGTcount: A:0.69, C:0.02, G:0.19, T:0.10
Consensus pattern (18 bp):
AAAATGAAAAAGAAAATG
Found at i:14988995 original size:30 final size:31
Alignment explanation
Indices: 14988961--14989044 Score: 100
Period size: 30 Copynumber: 2.8 Consensus size: 31
14988951 AAAAAGAAAA
* *
14988961 TGAAAATGAAAATGAAAAAGAAA-ATGAGAT
1 TGAAAAAGAAAATGAAAAAGAAATATGAGAG
* * *
14988991 TGAAAAAGAGAACG-AAAAGAAATTTGAGAG
1 TGAAAAAGAAAATGAAAAAGAAATATGAGAG
*
14989021 TGAAAAAGAAGATGAAAAAGAAAT
1 TGAAAAAGAAAATGAAAAAGAAAT
14989045 TGAAACAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
29 8 0.18
30 27 0.61
31 9 0.20
ACGTcount: A:0.62, C:0.01, G:0.23, T:0.14
Consensus pattern (31 bp):
TGAAAAAGAAAATGAAAAAGAAATATGAGAG
Found at i:14991191 original size:30 final size:31
Alignment explanation
Indices: 14991157--14991253 Score: 101
Period size: 30 Copynumber: 3.2 Consensus size: 31
14991147 AGCTCACTCC
*
14991157 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
* * * * *
14991187 TAGCTCAAC-TTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
*
14991217 CAGCTCAACTTT-AGCTCACGAGCTAAACCT
1 TAGCTCAACTTTCAGCTCACGAGCTAAACCT
*
14991247 TATCTCA
1 TAGCTCA
14991254 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
30 47 0.92
31 4 0.08
ACGTcount: A:0.28, C:0.30, G:0.13, T:0.29
Consensus pattern (31 bp):
TAGCTCAACTTTCAGCTCACGAGCTAAACCT
Found at i:14993133 original size:20 final size:20
Alignment explanation
Indices: 14993110--14993156 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
14993100 AGCTCCGTCC
14993110 AGCTCAATTTAGCTCATTTG
1 AGCTCAATTTAGCTCATTTG
** *
14993130 AGCTCGTTTTAGCTCGTTTG
1 AGCTCAATTTAGCTCATTTG
14993150 AGCTCAA
1 AGCTCAA
14993157 CTGAGCTTAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTCATTTG
Found at i:14995721 original size:15 final size:15
Alignment explanation
Indices: 14995701--14995731 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14995691 TCGGTCACGT
14995701 TGGCCACGTTGACGC
1 TGGCCACGTTGACGC
*
14995716 TGGCCAGGTTGACGC
1 TGGCCACGTTGACGC
14995731 T
1 T
14995732 AGCCTTTCCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.29, G:0.35, T:0.23
Consensus pattern (15 bp):
TGGCCACGTTGACGC
Found at i:15008991 original size:30 final size:30
Alignment explanation
Indices: 15008957--15009053 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
15008947 TAAACTAAAA
* *
15008957 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * *
15008987 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
15009017 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
15009047 TGAGCTA
1 TGAGCTA
15009054 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:15011229 original size:30 final size:30
Alignment explanation
Indices: 15011158--15011240 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
15011148 CTTTTGTTTC
* *
15011158 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
15011189 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
15011218 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
15011241 TCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:15011240 original size:18 final size:18
Alignment explanation
Indices: 15011191--15011246 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
15011181 CACTCTCAAA
* *
15011191 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
15011208 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
15011226 TTTCATTTTCTTTTTTCTT
1 TTTCATTTTC-ATTTTCTT
15011245 TT
1 TT
15011247 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 17 0.57
19 9 0.30
ACGTcount: A:0.07, C:0.20, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:15011247 original size:12 final size:12
Alignment explanation
Indices: 15011216--15011240 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15011206 TTTTTCAATC
15011216 TCATTTTCTTTT
1 TCATTTTCTTTT
15011228 TCATTTTCTTTT
1 TCATTTTCTTTT
15011240 T
1 T
15011241 TCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:15011319 original size:5 final size:5
Alignment explanation
Indices: 15011309--15011365 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
15011299 CTCTTGCCTC
*
15011309 TCTTT TCTTT T-TATT TCATTT TCTTT T-TCT TCTTT TGCTTTT TCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-C-TTT TCTTT
15011356 TCTTT TCTTT
1 TCTTT TCTTT
15011366 GTTTTCTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 6 0.14
7 5 0.11
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:15011349 original size:15 final size:14
Alignment explanation
Indices: 15011309--15011365 Score: 60
Period size: 16 Copynumber: 3.7 Consensus size: 14
15011299 CTCTTGCCTC
*
15011309 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-CT
15011324 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTCT
15011339 TCTTTTGCTTTTTCTTT
1 TCTTTT-CTTTTTC--T
15011356 TCTTTTCTTT
1 TCTTTTCTTT
15011366 GTTTTCTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
14 4 0.11
15 12 0.32
16 14 0.38
17 7 0.19
ACGTcount: A:0.04, C:0.18, G:0.02, T:0.77
Consensus pattern (14 bp):
TCTTTTCTTTTTCT
Found at i:15011366 original size:21 final size:21
Alignment explanation
Indices: 15011309--15011376 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
15011299 CTCTTGCCTC
* *
15011309 TCTTTTCTTTT-TATTTCATTT
1 TCTTTTCTTTTCT-TTGCTTTT
*
15011330 TCTTTT-TCTTCTTTTGCTTTT
1 TCTTTTCTTTTC-TTTGCTTTT
15011351 TCTTTTCTTTTCTTTG-TTTT
1 TCTTTTCTTTTCTTTGCTTTT
15011371 CTCTTT
1 -TCTTT
15011377 ACAAGAATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
20 7 0.18
21 27 0.69
22 5 0.13
ACGTcount: A:0.03, C:0.18, G:0.03, T:0.76
Consensus pattern (21 bp):
TCTTTTCTTTTCTTTGCTTTT
Found at i:15013973 original size:30 final size:30
Alignment explanation
Indices: 15013939--15014035 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
15013929 TAAACTAAAA
* *
15013939 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * *
15013969 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
15013999 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
15014029 TGAGCTA
1 TGAGCTA
15014036 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:15018680 original size:20 final size:19
Alignment explanation
Indices: 15018657--15018743 Score: 65
Period size: 19 Copynumber: 4.5 Consensus size: 19
15018647 TTCACAATCT
15018657 TTTTCTTTTTCTTCTTTCTC
1 TTTTCTTTTTCTT-TTTCTC
**
15018677 TTTTC-TTGCCTTTTTCTC
1 TTTTCTTTTTCTTTTTCTC
15018695 ATTTTCTTTTCTCATTTTTC-C
1 -TTTTCTTTT-TC-TTTTTCTC
*
15018716 -TATCTTTTTCTCATTTT-TC
1 TTTTCTTTTTCT--TTTTCTC
15018735 TTTTCTTTT
1 TTTTCTTTT
15018744 GTATTTTCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
17 1 0.02
18 8 0.15
19 22 0.42
20 14 0.26
21 2 0.04
22 6 0.11
ACGTcount: A:0.05, C:0.23, G:0.01, T:0.71
Consensus pattern (19 bp):
TTTTCTTTTTCTTTTTCTC
Found at i:15018706 original size:13 final size:13
Alignment explanation
Indices: 15018688--15018712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15018678 TTTCTTGCCT
15018688 TTTTCTCATTTTC
1 TTTTCTCATTTTC
15018701 TTTTCTCATTTT
1 TTTTCTCATTTT
15018713 TCCTATCTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTCTCATTTTC
Found at i:15033086 original size:38 final size:40
Alignment explanation
Indices: 15033025--15033101 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 40
15033015 ATTTGATGTG
15033025 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
*
15033065 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAT
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAT
15033102 GTAACACCCC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
38 23 0.64
39 5 0.14
40 8 0.22
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAATA
Found at i:15033512 original size:31 final size:31
Alignment explanation
Indices: 15033474--15033535 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
15033464 AATAACAGAG
15033474 TAAGCTTTTATAAGCTTAGTAAGTCTTAAGC
1 TAAGCTTTTATAAGCTTAGTAAGTCTTAAGC
15033505 TAAGCTTTTATAAGCTTAGTAAGTCTTAAGC
1 TAAGCTTTTATAAGCTTAGTAAGTCTTAAGC
15033536 AAATTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.13, G:0.16, T:0.39
Consensus pattern (31 bp):
TAAGCTTTTATAAGCTTAGTAAGTCTTAAGC
Found at i:15034548 original size:48 final size:48
Alignment explanation
Indices: 15034394--15034541 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
15034384 ATATATACAC
* **
15034394 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
15034442 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
15034490 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
15034538 ATCT
1 ATCT
15034542 TGTACATCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:15036875 original size:23 final size:23
Alignment explanation
Indices: 15036843--15036886 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
15036833 AAAATTTCAC
* *
15036843 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
15036866 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
15036887 TATTTTTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:15037070 original size:38 final size:38
Alignment explanation
Indices: 15036955--15037123 Score: 203
Period size: 38 Copynumber: 4.4 Consensus size: 38
15036945 GGATGTTACA
* *
15036955 GGTAATATATCCGGGTTAAATACCGCAGGCTTCGTGCT
1 GGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCT
* *
15036993 GGTAATATATCCAGGCTTAAAGACCCGCAGGCTTTGTGCT
1 GGTAATATATCCAGG-TTAAA-TCCCGCAGGCTTCGTGCT
* *
15037033 GGTAATATATCTAGGTTAAATCCCGCAAGCTTCGTGCT
1 GGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCT
* * * * *
15037071 GGTATTATATCCGGGTTAAATCCCGCAGGCCTAGTACT
1 GGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCT
* *
15037109 GGTATTATATTCAGG
1 GGTAATATATCCAGG
15037124 CCTTTGAGCC
Statistics
Matches: 112, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
38 73 0.65
39 10 0.09
40 29 0.26
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (38 bp):
GGTAATATATCCAGGTTAAATCCCGCAGGCTTCGTGCT
Found at i:15037171 original size:45 final size:45
Alignment explanation
Indices: 15037115--15037246 Score: 157
Period size: 45 Copynumber: 3.0 Consensus size: 45
15037105 TACTGGTATT
* * *
15037115 ATATTCAGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGAT-
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
*
15037159 ACTATTCGGGCCTTTGAGCCTAGTAGGCTATAATGCCGGTGACATG
1 A-TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
* * *
15037205 ATA-TCGAGCC-TTGAGCCTAGCAGGCGA-AATACCGGTGA-ATG
1 ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
15037246 A
1 A
15037247 ATAAAAGTCT
Statistics
Matches: 78, Mismatches: 8, Indels: 7
0.84 0.09 0.08
Matches are distributed among these distances:
41 4 0.05
42 10 0.13
43 15 0.19
44 7 0.09
45 41 0.53
46 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (45 bp):
ATATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGACATG
Found at i:15040908 original size:43 final size:43
Alignment explanation
Indices: 15040841--15041011 Score: 152
Period size: 43 Copynumber: 4.0 Consensus size: 43
15040831 TCTGAACTCA
* *
15040841 TTCACCGGCATT-TCGCCTGCTAGGCTTGAAGCCCAATATCAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCAATATCAT
* ** * *
15040883 TTCACTGGCATTATAGCCTGCTAGGCCCAAAGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCAATATCAT
* * *
15040926 CTCACCAGCATTATAGCCTGCTAGGCCTGAAGCCCGATAAT-ATT
1 TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCAAT-ATCA-T
* * * *
15040970 ATTCACCAGC-TTAAAGCTTGCTAGGCC-GAGGCCCGAATATCA
1 -TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCC-AATATCA
15041012 CATTTCGATA
Statistics
Matches: 106, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 11 0.10
43 66 0.62
44 21 0.20
45 8 0.08
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCCTGAAGCCCAATATCAT
Found at i:15046469 original size:13 final size:12
Alignment explanation
Indices: 15046453--15046484 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
15046443 AAAAAAATAT
15046453 AAAAAAATTCGAA
1 AAAAAAATTC-AA
15046466 AAAAAAATTCAA
1 AAAAAAATTCAA
15046478 AAAAAAA
1 AAAAAAA
15046485 GTTTGTATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.78, C:0.06, G:0.03, T:0.12
Consensus pattern (12 bp):
AAAAAAATTCAA
Found at i:15046543 original size:13 final size:13
Alignment explanation
Indices: 15046525--15046581 Score: 60
Period size: 13 Copynumber: 4.0 Consensus size: 13
15046515 ATTTAGTATT
15046525 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
15046538 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
*
15046551 TTCGGAATTAAAAAAAAA
1 ----GAA-GAAAAAAAAA
15046569 GAAGAAAAAAAAA
1 GAAGAAAAAAAAA
15046582 TCAAAATTGA
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
13 22 0.59
14 3 0.08
17 3 0.08
18 9 0.24
ACGTcount: A:0.77, C:0.02, G:0.14, T:0.07
Consensus pattern (13 bp):
GAAGAAAAAAAAA
Found at i:15046567 original size:31 final size:31
Alignment explanation
Indices: 15046528--15046599 Score: 110
Period size: 31 Copynumber: 2.3 Consensus size: 31
15046518 TAGTATTGAA
**
15046528 GAAAAAAAAAGAAGAAAAAAAAATTCGGAATT
1 GAAAAAAAAAGAAGAAAAAAAAA-TCAAAATT
15046560 -AAAAAAAAAGAAGAAAAAAAAATCAAAATT
1 GAAAAAAAAAGAAGAAAAAAAAATCAAAATT
15046590 GAAAAAAAAA
1 GAAAAAAAAA
15046600 AGTGATTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
30 6 0.16
31 31 0.84
ACGTcount: A:0.76, C:0.03, G:0.11, T:0.10
Consensus pattern (31 bp):
GAAAAAAAAAGAAGAAAAAAAAATCAAAATT
Found at i:15047527 original size:21 final size:21
Alignment explanation
Indices: 15047487--15047545 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
15047477 AATCTTGAAT
*
15047487 GAAATTGAGAGAAGAA-AAAAA
1 GAAA-TGAGAGAAAAAGAAAAA
15047508 GAAATGAGAGAAAAAGAAAAA
1 GAAATGAGAGAAAAAGAAAAA
* *
15047529 GAAATAAAAGAAAAAGA
1 GAAATGAGAGAAAAAGA
15047546 TGAAAATGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 10 0.29
21 24 0.71
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (21 bp):
GAAATGAGAGAAAAAGAAAAA
Found at i:15047537 original size:15 final size:14
Alignment explanation
Indices: 15047498--15047545 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
15047488 AAATTGAGAG
15047498 AAGAAAAAAAGAAA
1 AAGAAAAAAAGAAA
* *
15047512 TGAGAGAAAAAGAAA
1 -AAGAAAAAAAGAAA
15047527 AAGAAATAAAAGAAA
1 AAGAAA-AAAAGAAA
15047542 AAGA
1 AAGA
15047546 TGAAAATGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (14 bp):
AAGAAAAAAAGAAA
Found at i:15049399 original size:9 final size:9
Alignment explanation
Indices: 15049385--15049420 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
15049375 ACATTTTTGG
15049385 TTCAGCTCA
1 TTCAGCTCA
15049394 TTCAGCTCAA
1 TTCAGCTC-A
15049404 TTCAGCTCA
1 TTCAGCTCA
*
15049413 TTGAGCTC
1 TTCAGCTC
15049421 GTTATTAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (9 bp):
TTCAGCTCA
Found at i:15051615 original size:48 final size:48
Alignment explanation
Indices: 15051544--15051639 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
15051534 CAACCTATCC
* *
15051544 AGATTCCTTAGTTGAAATGGAAGCGTATCACCATGGACTTTATTAATG
1 AGATTCCTTAATTGAAATGGAAGCATATCACCATGGACTTTATTAATG
15051592 AGATTCCTTAATTGAAATGGAAGCATATCACCATGGACTTTATTAATG
1 AGATTCCTTAATTGAAATGGAAGCATATCACCATGGACTTTATTAATG
15051640 GCCTACCTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (48 bp):
AGATTCCTTAATTGAAATGGAAGCATATCACCATGGACTTTATTAATG
Found at i:15056232 original size:15 final size:15
Alignment explanation
Indices: 15056212--15056259 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
15056202 TCAAAGGTGG
15056212 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
15056227 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
15056242 -TTTATGGATATAAA
1 GTTTATGGATATGAA
15056256 GTTT
1 GTTT
15056260 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:15057024 original size:14 final size:14
Alignment explanation
Indices: 15056982--15057026 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
15056972 TTAAAGAAGC
15056982 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
15056996 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
15057009 AACTCATTTAATTA
1 AACTCATTAAATTA
15057023 AACT
1 AACT
15057027 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:15060693 original size:11 final size:10
Alignment explanation
Indices: 15060668--15060728 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
15060658 ACCAATAAAA
15060668 TAAA-TGAGC
1 TAAATTGAGC
*
15060677 TGAATTGTAGC
1 TAAATTG-AGC
15060688 TAAATTGAGC
1 TAAATTGAGC
**
15060698 TCGATTGAGC
1 TAAATTGAGC
15060708 TGAAA-TGAGC
1 T-AAATTGAGC
*
15060718 TCAATTGAGC
1 TAAATTGAGC
15060728 T
1 T
15060729 GGTCGGAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
9 5 0.12
10 26 0.63
11 10 0.24
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.30
Consensus pattern (10 bp):
TAAATTGAGC
Found at i:15060729 original size:20 final size:20
Alignment explanation
Indices: 15060669--15060729 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
15060659 CCAATAAAAT
*
15060669 AAATGAGCTGAATTGTAGCT-
1 AAATGAGCTCAATTG-AGCTG
*
15060689 AAATTGAGCTCGATTGAGCTG
1 AAA-TGAGCTCAATTGAGCTG
15060710 AAATGAGCTCAATTGAGCTG
1 AAATGAGCTCAATTGAGCTG
15060730 GTCGGAGTTG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTG
Found at i:15062821 original size:18 final size:18
Alignment explanation
Indices: 15062800--15062834 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15062790 TTTTTCTTTT
15062800 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTTC-CAATC
15062818 TCAATTTCTTTTCCAAT
1 TCAATTTCTTTTCCAAT
15062835 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (18 bp):
TCAATTTCTTTTCCAATC
Found at i:15063728 original size:13 final size:13
Alignment explanation
Indices: 15063710--15063800 Score: 55
Period size: 12 Copynumber: 6.8 Consensus size: 13
15063700 AGACTCTTCA
15063710 CTTTTTTTTTCTT
1 CTTTTTTTTTCTT
15063723 CTTTTTTTTTAAC-T
1 CTTTTTTTTT--CTT
*
15063737 CGATTTTTTTGTCACTT
1 C--TTTTTTT-T-TCTT
*
15063754 CTTTTTTTTT-TG
1 CTTTTTTTTTCTT
*
15063766 CTTTTTTTTTC-A
1 CTTTTTTTTTCTT
**
15063778 CTTTTTTTTTGAT
1 CTTTTTTTTTCTT
15063791 -TTTTTTTTTC
1 CTTTTTTTTTC
15063801 AATCAATTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
12 30 0.48
13 10 0.16
14 3 0.05
15 8 0.13
16 8 0.13
17 3 0.05
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (13 bp):
CTTTTTTTTTCTT
Found at i:15063769 original size:12 final size:12
Alignment explanation
Indices: 15063754--15063799 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
15063744 TTTGTCACTT
15063754 CTTTTTTTTTTG
1 CTTTTTTTTTTG
**
15063766 CTTTTTTTTTCA
1 CTTTTTTTTTTG
15063778 C-TTTTTTTTTG
1 CTTTTTTTTTTG
*
15063789 ATTTTTTTTTT
1 CTTTTTTTTTT
15063800 CAATCAATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
11 8 0.29
12 20 0.71
ACGTcount: A:0.04, C:0.09, G:0.04, T:0.83
Consensus pattern (12 bp):
CTTTTTTTTTTG
Found at i:15063772 original size:11 final size:11
Alignment explanation
Indices: 15063756--15063798 Score: 59
Period size: 11 Copynumber: 3.8 Consensus size: 11
15063746 TGTCACTTCT
15063756 TTTTTTTTTGC
1 TTTTTTTTTGC
*
15063767 TTTTTTTTTCAC
1 TTTTTTTTT-GC
*
15063779 TTTTTTTTTGA
1 TTTTTTTTTGC
15063790 TTTTTTTTT
1 TTTTTTTTT
15063799 TCAATCAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
11 18 0.64
12 10 0.36
ACGTcount: A:0.05, C:0.07, G:0.05, T:0.84
Consensus pattern (11 bp):
TTTTTTTTTGC
Found at i:15063785 original size:41 final size:40
Alignment explanation
Indices: 15063707--15063800 Score: 104
Period size: 43 Copynumber: 2.4 Consensus size: 40
15063697 GCAAGACTCT
15063707 TCACTTTTTTTTTCTTCTTTTTTTTTAACTCGATTTTTTTG
1 TCACTTTTTTTTTCTTCTTTTTTTTTAACTC-ATTTTTTTG
* *
15063748 TCACTTCTTTTTTTTTTGCTTTTTTTTTCACT--TTTTTTT-
1 TCACTT-TTTTTTTCTT-CTTTTTTTTTAACTCATTTTTTTG
* *
15063787 TGATTTTTTTTTTC
1 TCACTTTTTTTTTC
15063801 AATCAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
38 7 0.15
39 4 0.09
40 7 0.15
41 6 0.13
42 9 0.20
43 13 0.28
ACGTcount: A:0.07, C:0.14, G:0.04, T:0.74
Consensus pattern (40 bp):
TCACTTTTTTTTTCTTCTTTTTTTTTAACTCATTTTTTTG
Found at i:15063797 original size:27 final size:27
Alignment explanation
Indices: 15063740--15063826 Score: 72
Period size: 28 Copynumber: 3.2 Consensus size: 27
15063730 TTTAACTCGA
*
15063740 TTTTTTTGTCACTTCTTTTTTT--TTTGCT
1 TTTTTTTATCACTT-TTTTTTTGATTT--T
15063768 TTTTTTT-TCACTTTTTTTTTGATTTT
1 TTTTTTTATCACTTTTTTTTTGATTTT
* * * *
15063794 TTTTTTCAATCAATTTTTTTTCGAATTT
1 TTTTTT-TATCACTTTTTTTTTGATTTT
15063822 TTTTT
1 TTTTT
15063827 GATTTTTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 8
0.81 0.06 0.13
Matches are distributed among these distances:
26 14 0.27
27 6 0.12
28 31 0.61
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.75
Consensus pattern (27 bp):
TTTTTTTATCACTTTTTTTTTGATTTT
Found at i:15063831 original size:10 final size:11
Alignment explanation
Indices: 15063805--15063837 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
15063795 TTTTTCAATC
15063805 AATTTTTTTTCG
1 AATTTTTTTT-G
15063817 AATTTTTTTTG
1 AATTTTTTTTG
15063828 -ATTTTTTTTG
1 AATTTTTTTTG
15063838 TTACTCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.48
11 1 0.05
12 10 0.48
ACGTcount: A:0.15, C:0.03, G:0.09, T:0.73
Consensus pattern (11 bp):
AATTTTTTTTG
Found at i:15065221 original size:10 final size:10
Alignment explanation
Indices: 15065191--15065245 Score: 56
Period size: 10 Copynumber: 5.4 Consensus size: 10
15065181 AAAATAAATA
*
15065191 AGCTGAATTG
1 AGCTCAATTG
*
15065201 TAGCTAAATTG
1 -AGCTCAATTG
*
15065212 AGCTCGATTG
1 AGCTCAATTG
* *
15065222 AGCTAAAATG
1 AGCTCAATTG
15065232 AGCTCAATTG
1 AGCTCAATTG
15065242 AGCT
1 AGCT
15065246 GGTCGGAGTT
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
10 27 0.75
11 9 0.25
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.29
Consensus pattern (10 bp):
AGCTCAATTG
Found at i:15065225 original size:20 final size:20
Alignment explanation
Indices: 15065186--15065245 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
15065176 CCAATAAAAT
* *
15065186 AAATAAGCTGAATTGTAGCTA
1 AAATGAGCTCAATTG-AGCTA
* *
15065207 AATTGAGCTCGATTGAGCTA
1 AAATGAGCTCAATTGAGCTA
15065227 AAATGAGCTCAATTGAGCT
1 AAATGAGCTCAATTGAGCT
15065246 GGTCGGAGTT
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 22 0.67
21 11 0.33
ACGTcount: A:0.37, C:0.13, G:0.22, T:0.28
Consensus pattern (20 bp):
AAATGAGCTCAATTGAGCTA
Found at i:15065694 original size:30 final size:30
Alignment explanation
Indices: 15065623--15065705 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
15065613 CTTTTGTTTC
* *
15065623 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
15065654 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
15065683 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
15065706 TCTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:15065705 original size:18 final size:18
Alignment explanation
Indices: 15065656--15065711 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
15065646 CACTCTCAAA
* *
15065656 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
15065673 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
15065691 TTTCATTTTCTTTTTTCTT
1 TTTCATTTTC-ATTTTCTT
15065710 TT
1 TT
15065712 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 17 0.57
19 9 0.30
ACGTcount: A:0.07, C:0.20, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:15065712 original size:12 final size:12
Alignment explanation
Indices: 15065681--15065705 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15065671 TTTTTCAATC
15065681 TCATTTTCTTTT
1 TCATTTTCTTTT
15065693 TCATTTTCTTTT
1 TCATTTTCTTTT
15065705 T
1 T
15065706 TCTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:15065723 original size:12 final size:12
Alignment explanation
Indices: 15065708--15065738 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15065698 TTCTTTTTTC
15065708 TTTTCAAAGGCT
1 TTTTCAAAGGCT
15065720 TTTTCAAAGGCT
1 TTTTCAAAGGCT
15065732 TTTTCAA
1 TTTTCAA
15065739 GTTCTCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.13, T:0.45
Consensus pattern (12 bp):
TTTTCAAAGGCT
Found at i:15065796 original size:5 final size:5
Alignment explanation
Indices: 15065786--15065848 Score: 58
Period size: 5 Copynumber: 12.0 Consensus size: 5
15065776 CTCTTGCCTC
*
15065786 TCTTT TCTTT T-TATT TCATTT TCATTT TCTTT T-TCT TCTTT TGCTTT
1 TCTTT TCTTT TCT-TT TC-TTT TC-TTT TCTTT TCTTT TCTTT T-CTTT
15065833 TGCTTT TCTTT TCTTT
1 T-CTTT TCTTT TCTTT
15065849 ATTTTCTCTT
Statistics
Matches: 51, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
4 4 0.08
5 25 0.49
6 21 0.41
7 1 0.02
ACGTcount: A:0.05, C:0.17, G:0.03, T:0.75
Consensus pattern (5 bp):
TCTTT
Found at i:15070367 original size:30 final size:30
Alignment explanation
Indices: 15070296--15070378 Score: 89
Period size: 30 Copynumber: 2.7 Consensus size: 30
15070286 CTTTTGTTTC
* *
15070296 AATTTCTTTTTCATCTTCTTTTTCACTCTCA
1 AATTTCTTTTTCTTC-TCTTTTTCAATCTCA
15070327 AATTTC-TTTTCGTTCTCTTTTTCAATCTC-
1 AATTTCTTTTTC-TTCTCTTTTTCAATCTCA
* *
15070356 ATTTTCTTTTTCATTTTCTTTTT
1 AATTTCTTTTTC-TTCTCTTTTT
15070379 ACTTTTCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 5 0.11
30 32 0.71
31 8 0.18
ACGTcount: A:0.13, C:0.22, G:0.01, T:0.64
Consensus pattern (30 bp):
AATTTCTTTTTCTTCTCTTTTTCAATCTCA
Found at i:15070378 original size:18 final size:18
Alignment explanation
Indices: 15070329--15070384 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
15070319 CACTCTCAAA
* *
15070329 TTTC-TTTTCGTTCTCTT
1 TTTCATTTTCATTTTCTT
* *
15070346 TTTCAATCTCATTTTCTT
1 TTTCATTTTCATTTTCTT
*
15070364 TTTCATTTTCTTTTTACTT
1 TTTCATTTTCATTTT-CTT
15070383 TT
1 TT
15070385 CAAAGGCTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
17 4 0.13
18 21 0.70
19 5 0.17
ACGTcount: A:0.09, C:0.20, G:0.02, T:0.70
Consensus pattern (18 bp):
TTTCATTTTCATTTTCTT
Found at i:15070385 original size:12 final size:12
Alignment explanation
Indices: 15070354--15070378 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15070344 TTTTTCAATC
15070354 TCATTTTCTTTT
1 TCATTTTCTTTT
15070366 TCATTTTCTTTT
1 TCATTTTCTTTT
15070378 T
1 T
15070379 ACTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:15070473 original size:21 final size:21
Alignment explanation
Indices: 15070449--15070500 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
15070439 CTTGCCTCTC
15070449 TTTTCTTTTTATTTCATTTTCT
1 TTTTCTTTTT-TTTCATTTTCT
* *
15070471 TTTTCTTCTTTTTCTTTTTCT
1 TTTTCTTTTTTTTCATTTTCT
15070492 TTTTCTTTT
1 TTTTCTTTT
15070501 CTTTGTTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 18 0.67
22 9 0.33
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTCTTTTTTTTCATTTTCT
Found at i:15070476 original size:6 final size:6
Alignment explanation
Indices: 15070460--15070504 Score: 53
Period size: 6 Copynumber: 8.2 Consensus size: 6
15070450 TTTCTTTTTA
*
15070460 TTTCAT TTTCTT TTTC-- -TTCTT TTTCTT TTTCTT TTTC-T TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
15070504 T
1 T
15070505 GTTTTCTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
3 3 0.09
5 5 0.15
6 26 0.76
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTCTT
Found at i:15070483 original size:15 final size:15
Alignment explanation
Indices: 15070449--15070492 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
15070439 CTTGCCTCTC
*
15070449 TTTTCTTTTTATTTCA
1 TTTTCTTTTT-CTTCA
*
15070465 TTTTCTTTTTCTTCT
1 TTTTCTTTTTCTTCA
15070480 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
15070493 TTTCTTTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 16 0.62
16 10 0.38
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTCTTTTTCTTCA
Found at i:15070509 original size:15 final size:14
Alignment explanation
Indices: 15070447--15070511 Score: 58
Period size: 15 Copynumber: 4.2 Consensus size: 14
15070437 CTCTTGCCTC
15070447 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
*
15070462 TCATTTTCTTTTTCT
1 TC-TTTTCTTTTTTT
15070477 TCTTTTTCTTTTTCTTTT
1 TC-TTTTC--TTT-TTTT
*
15070495 TCTTTTCTTTGTTT
1 TCTTTTCTTTTTTT
15070509 TCT
1 TCT
15070512 CTTTACAAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
14 6 0.14
15 13 0.31
16 10 0.24
17 8 0.19
18 5 0.12
ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:15070509 original size:21 final size:21
Alignment explanation
Indices: 15070449--15070515 Score: 73
Period size: 21 Copynumber: 3.1 Consensus size: 21
15070439 CTTGCCTCTC
* *
15070449 TTTTCTTTTTATTTCATTTTCT
1 TTTTCTTCTT-TTTCTTTTTCT
15070471 TTTTCTTCTTTTTCTTTTTCT
1 TTTTCTTCTTTTTCTTTTTCT
*
15070492 TTTTCTT-TTCTTTGTTTTCTCT
1 TTTTCTTCTT-TTTCTTTT-TCT
15070514 TT
1 TT
15070516 ACAAGAATGT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
20 2 0.05
21 24 0.60
22 14 0.35
ACGTcount: A:0.03, C:0.16, G:0.01, T:0.79
Consensus pattern (21 bp):
TTTTCTTCTTTTTCTTTTTCT
Found at i:15073218 original size:30 final size:30
Alignment explanation
Indices: 15073184--15073280 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
15073174 TAAACTAAAA
* *
15073184 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* * * * * *
15073214 TGAGCTGAGATTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
* *
15073244 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGATTTAGCTCGTGAGCT-AAAGT
15073274 TGAGCTA
1 TGAGCTA
15073281 GGAGTGAGCT
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 47 0.94
31 3 0.06
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCGTGAGCTAAAGT
Found at i:15074769 original size:14 final size:14
Alignment explanation
Indices: 15074752--15074791 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
15074742 CGAATGGAAT
*
15074752 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
15074766 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
15074780 GATATGAACAAA
1 GGTAGGAACAAA
15074792 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:15081305 original size:11 final size:11
Alignment explanation
Indices: 15081289--15081338 Score: 66
Period size: 11 Copynumber: 4.6 Consensus size: 11
15081279 TAAATCACTT
*
15081289 TTTTTTTTGAA
1 TTTTTTTCGAA
*
15081300 TTTTTTTCAAA
1 TTTTTTTCGAA
*
15081311 TTTTTTTTGAA
1 TTTTTTTCGAA
15081322 TTTTTTTCG-A
1 TTTTTTTCGAA
15081332 TTTTTTT
1 TTTTTTT
15081339 AAAACTTGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 8 0.24
11 26 0.76
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (11 bp):
TTTTTTTCGAA
Found at i:15081317 original size:22 final size:21
Alignment explanation
Indices: 15081289--15081338 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 21
15081279 TAAATCACTT
15081289 TTTTTTTTGAATTTTTTTCAAA
1 TTTTTTTTGAATTTTTTTC-AA
*
15081311 TTTTTTTTGAATTTTTTTCGA
1 TTTTTTTTGAATTTTTTTCAA
15081332 TTTTTTT
1 TTTTTTT
15081339 AAAACTTGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 8 0.30
22 19 0.70
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.74
Consensus pattern (21 bp):
TTTTTTTTGAATTTTTTTCAA
Found at i:15083488 original size:27 final size:27
Alignment explanation
Indices: 15083235--15083487 Score: 326
Period size: 27 Copynumber: 9.4 Consensus size: 27
15083225 TGGATAAGTT
* *
15083235 GTAGAATTACTGAAATACCCATGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
**
15083262 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
15083289 GTAGAATTATTGAAATACCCCTGTAAG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
15083316 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
15083343 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
15083370 GTATAATTACTGAAATACCCCTGTAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * *
15083397 ATAGAATTACTGAAATACCCTTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* *
15083424 GTAGAAATACTGAAATACCCCTATAGG
1 GTAGAATTACTGAAATACCCCTGTAGG
* * * *
15083451 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACTGAAATACCCCTGTAGG
*
15083478 GTAAAATTAC
1 GTAGAATTAC
15083488 CATTTTGCCC
Statistics
Matches: 195, Mismatches: 31, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 195 1.00
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (27 bp):
GTAGAATTACTGAAATACCCCTGTAGG
Done.