Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 48 of 259
Found at i:15084259 original size:26 final size:27
Alignment explanation
Indices: 15084230--15084289 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
15084220 CCACATAAAT
*
15084230 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
15084256 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
15084283 ATATCTG
1 ATATCTG
15084290 GCAGCTTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:15084259 original size:71 final size:67
Alignment explanation
Indices: 15084121--15084262 Score: 167
Period size: 67 Copynumber: 2.1 Consensus size: 67
15084111 GAGGAAGCGT
* * ** * *
15084121 TCTGGTAGCCTCGTTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGATTTCGTCACAA
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
15084186 TA
66 TA
* * *
15084188 TCTGGCAGCGTCGCTGCAATCTGGTGGCTTCGCCACATAAATATATCTGTTCTGGTGGCCTAGCC
1 TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCAC----ATATATCTGTTCTGGTGACCTAGCC
15084253 ACAATA
62 ACAATA
15084259 TCTG
1 TCTG
15084263 TATCTGGTGA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
67 32 0.52
71 30 0.48
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (67 bp):
TCTGGCAGCCTCGCTGCAATCTGGTGGCCTCGCCACATATATCTGTTCTGGTGACCTAGCCACAA
TA
Found at i:15086305 original size:68 final size:66
Alignment explanation
Indices: 15086250--15086408 Score: 237
Period size: 68 Copynumber: 2.3 Consensus size: 66
15086240 GATACTATAT
*
15086250 TGTAGCTAGGTTACATGTGTGATACGGGATGTATCCCATGTAGACAAAAGAGCTACGTGAGAGAT
1 TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAAAGAGCTAC--GAGAGAT
15086315 AAA
64 AAA
*
15086318 TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGAT
1 TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAAAGAGCTAC--GAGAGAT
15086383 AAA
64 AAA
* * *
15086386 TGTAGCTAAGTCGCATGAGTGAT
1 TGTAGCTAGGTCACATGTGTGAT
15086409 TCCAAGTGAA
Statistics
Matches: 86, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 86 1.00
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (66 bp):
TGTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAAAGAGCTACGAGAGATAA
A
Found at i:15092521 original size:27 final size:26
Alignment explanation
Indices: 15092490--15092667 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
15092480 TAAATTGTAC
15092490 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
15092517 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
15092543 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
15092571 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
15092599 GGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
15092626 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
15092653 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
15092668 GACTCGATAT
Statistics
Matches: 131, Mismatches: 15, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.79
28 26 0.20
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:15092606 original size:82 final size:81
Alignment explanation
Indices: 15092491--15092646 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
15092481 AAATTGTACA
*
15092491 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
15092555 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
15092572 GCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
15092637 TGCGAGTTGA
65 TGCGAATTGA
15092647 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:15092658 original size:82 final size:81
Alignment explanation
Indices: 15092487--15092667 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
15092477 GATTAAATTG
*
15092487 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
15092552 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
15092568 TGCGGCACTAAGTGTGCGAGTTTGACTATGTGGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
15092632 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
15092650 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
15092668 GACTCGATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTGGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:15097585 original size:68 final size:67
Alignment explanation
Indices: 15097531--15097688 Score: 262
Period size: 68 Copynumber: 2.3 Consensus size: 67
15097521 ATACTATATA
*
15097531 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-AAGAGATA
15097596 AAT
65 AAT
*
15097599 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGTGAGAGATA
1 GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACG-AAGAGATA
15097664 AAT
65 AAT
* *
15097667 GTAGCTAGGTCGCATGAGTGAT
1 GTAGCTAGGTCACATGTGTGAT
15097689 TCTAAGTGAA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
68 88 1.00
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (67 bp):
GTAGCTAGGTCACATGTGTGATACGGGATGTATCCCATGTAGACAAGAGAGCTACGAAGAGATAA
AT
Found at i:15097760 original size:66 final size:67
Alignment explanation
Indices: 15097565--15097762 Score: 201
Period size: 68 Copynumber: 2.9 Consensus size: 67
15097555 GGGATGTATC
* * *
15097565 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCACATGTGTGATAC---GGGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACTAAGTGA
* *
15097627 TGTATC-
62 AGGA-CA
*
15097633 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGAGTGATTCTAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGATAAATG-AGCTAGGTCGCATGAGTGATACTAAGTGA
15097698 AGGACA
62 AGGACA
*
15097704 CCATGTAGACAAGAGAGCTAC-GAGATAAATCG-GCTAGGTCGCATGAGTGGTACTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGATAAAT-GAGCTAGGTCGCATGAGTGATACTAAGTG
15097763 TTCACCATGT
Statistics
Matches: 117, Mismatches: 8, Indels: 12
0.85 0.06 0.09
Matches are distributed among these distances:
66 25 0.21
67 9 0.08
68 56 0.48
70 1 0.01
71 26 0.22
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (67 bp):
CCATGTAGACAAGAGAGCTACGGAGATAAATGAGCTAGGTCGCATGAGTGATACTAAGTGAAGGA
CA
Found at i:15100984 original size:23 final size:22
Alignment explanation
Indices: 15100946--15101021 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 22
15100936 TATAAAACCT
15100946 AATAAAAATAAGCTTAAAGA-AA
1 AATAAAAATAAGCTTAAA-ATAA
15100968 AATAAAAAGT-AGTCTTAAAATAA
1 AATAAAAA-TAAG-CTTAAAATAA
* *
15100991 AATAAAAGTAA-C--AACATAA
1 AATAAAAATAAGCTTAAAATAA
15101010 AATAATAAATAA
1 AATAA-AAATAA
15101022 AAGTTTTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
19 11 0.24
20 5 0.11
21 1 0.02
22 12 0.26
23 17 0.37
ACGTcount: A:0.67, C:0.05, G:0.07, T:0.21
Consensus pattern (22 bp):
AATAAAAATAAGCTTAAAATAA
Found at i:15101000 original size:22 final size:23
Alignment explanation
Indices: 15100946--15100997 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
15100936 TATAAAACCT
15100946 AATAAAAA-TAAG-CTTAAAGAAA
1 AATAAAAAGT-AGTCTTAAAGAAA
15100968 AATAAAAAGTAGTCTTAAA-ATAA
1 AATAAAAAGTAGTCTTAAAGA-AA
15100991 AATAAAA
1 AATAAAA
15100998 GTAACAACAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 11 0.41
23 16 0.59
ACGTcount: A:0.67, C:0.04, G:0.08, T:0.21
Consensus pattern (23 bp):
AATAAAAAGTAGTCTTAAAGAAA
Found at i:15105934 original size:19 final size:19
Alignment explanation
Indices: 15105897--15105934 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
15105887 ACCTGTCAGA
*
15105897 AGAAAATAAATGAAGAATT
1 AGAAAATAAATGAAAAATT
15105916 AGAAAATAAAAT-AAAAATT
1 AGAAAAT-AAATGAAAAATT
15105935 TAAATTGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (19 bp):
AGAAAATAAATGAAAAATT
Found at i:15106681 original size:15 final size:15
Alignment explanation
Indices: 15106658--15106688 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15106648 GAATATCAAA
15106658 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
*
15106673 ACAATAATTAAGAAC
1 ACAAGAATTAAGAAC
15106688 A
1 A
15106689 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.13, G:0.10, T:0.16
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:15109593 original size:21 final size:22
Alignment explanation
Indices: 15109555--15109606 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
15109545 ATCATGTGAG
15109555 AAAGAAAAAGATAGTGAA-AGA
1 AAAGAAAAAGATAGTGAATAGA
*
15109576 AAAGAAAAAGA-ACTTGAATTAGA
1 AAAGAAAAAGATA-GTGAA-TAGA
15109599 AAAGAAAA
1 AAAGAAAA
15109607 TTGAGAATGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
20 1 0.04
21 15 0.56
23 11 0.41
ACGTcount: A:0.67, C:0.02, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAGAAAAAGATAGTGAATAGA
Found at i:15110601 original size:67 final size:67
Alignment explanation
Indices: 15110522--15110655 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
15110512 ATGCAAAATC
*
15110522 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGTATGTCTTGCATGAG
1 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
15110587 TT
66 TT
15110589 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
1 AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
15110654 TT
66 TT
15110656 TAACTTGCAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.28, C:0.13, G:0.24, T:0.35
Consensus pattern (67 bp):
AAATCTTTGATCCTAGAAATTGCACTATAGTGGGATTTGAAGGATTCGAGCATGTCTTGCATGAG
TT
Found at i:15111581 original size:26 final size:25
Alignment explanation
Indices: 15111537--15111589 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
15111527 TTAATATGTG
* *
15111537 TTTAATGTGTCTAGCTTAGGACATAA
1 TTTAATGTGTCTAACTTAGAACA-AA
*
15111563 TTTAATGTGTCTAATTTAGAACAAA
1 TTTAATGTGTCTAACTTAGAACAAA
15111588 TT
1 TT
15111590 AATTAGTTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
25 4 0.17
26 20 0.83
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (25 bp):
TTTAATGTGTCTAACTTAGAACAAA
Found at i:15112365 original size:10 final size:11
Alignment explanation
Indices: 15112322--15112370 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
15112312 TTTTCATGCT
15112322 AGGAAACTTCA
1 AGGAAACTTCA
*
15112333 AGGAATCTTGCA
1 AGGAAACTT-CA
*
15112345 AGGACAC-TCA
1 AGGAAACTTCA
15112355 A-GAAACTTCA
1 AGGAAACTTCA
15112365 AGGAAA
1 AGGAAA
15112371 TTTCCAGCCT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
9 4 0.13
10 7 0.23
11 13 0.42
12 7 0.23
ACGTcount: A:0.45, C:0.18, G:0.20, T:0.16
Consensus pattern (11 bp):
AGGAAACTTCA
Found at i:15114285 original size:14 final size:14
Alignment explanation
Indices: 15114268--15114307 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
15114258 CGAATGGAAT
*
15114268 GGTAGGAACGAAAG
1 GGTAGGAACAAAAG
15114282 GGTAGGAACAAAAG
1 GGTAGGAACAAAAG
* *
15114296 GATATGAACAAA
1 GGTAGGAACAAA
15114308 TTGGTCGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.50, C:0.07, G:0.33, T:0.10
Consensus pattern (14 bp):
GGTAGGAACAAAAG
Found at i:15115863 original size:46 final size:45
Alignment explanation
Indices: 15115813--15115988 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 45
15115803 TGGTTGAGCA
15115813 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
15115859 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAA-T--G
* * *
15115904 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
15115952 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15115989 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 6, Indels: 24
0.79 0.04 0.17
Matches are distributed among these distances:
42 3 0.03
43 6 0.05
45 2 0.02
46 64 0.57
47 29 0.26
48 1 0.01
50 5 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:15115969 original size:93 final size:93
Alignment explanation
Indices: 15115810--15115981 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
15115800 GGATGGTTGA
* *
15115810 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCGTTGAGT
15115875 TGAGTCCGAGTTCAAGAGATGTAACTAG
66 TGAGTCCGAGTTCAAGAGATGTAACTAG
* * *
15115903 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGTGAACG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTC-CGAACTCGTTGAG
15115967 TTGAGTCCGAGTTCA
65 TTGAGTCCGAGTTCA
15115982 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCAAGAGATGTAACTAG
Found at i:15118948 original size:15 final size:15
Alignment explanation
Indices: 15118928--15118983 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
15118918 GTATCTTGGG
15118928 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
15118943 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
15118958 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
15118973 TTTCTTTATTC
1 TTTCTTTATTC
15118984 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:15121432 original size:46 final size:45
Alignment explanation
Indices: 15121382--15121556 Score: 191
Period size: 46 Copynumber: 3.8 Consensus size: 45
15121372 TGGTTGAGCA
15121382 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
* *
15121428 TCCGAACTCGTTGAGTTGAGTCCGAGTT---TGA-GAGATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGGAA-T--G
*
15121473 CATCCGAGCTCGTT-AGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GAATG
*
15121520 -CTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15121557 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 5, Indels: 26
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 7 0.06
44 1 0.01
45 11 0.10
46 67 0.60
47 12 0.11
49 7 0.06
50 3 0.03
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGAATG
Found at i:15121537 original size:92 final size:93
Alignment explanation
Indices: 15121379--15121547 Score: 288
Period size: 92 Copynumber: 1.8 Consensus size: 93
15121369 GGATGGTTGA
15121379 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
15121444 TGAGTCCGAGTTTGAGAGATGTAACTAG
66 TGAGTCCGAGTTTGAGAGATGTAACTAG
* * *
15121472 GCATCCGAGCTCGTT-AGTTGAGTCCGAGTTCACTTATGGATGTGAATG-CTCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTC-CGAACTCGTTGAG
15121535 TTGAGTCCGAGTT
65 TTGAGTCCGAGTT
15121548 CACTTATGGG
Statistics
Matches: 72, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
91 1 0.01
92 57 0.79
93 14 0.19
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
TGAGTCCGAGTTTGAGAGATGTAACTAG
Found at i:15125600 original size:30 final size:30
Alignment explanation
Indices: 15125566--15125662 Score: 81
Period size: 30 Copynumber: 3.2 Consensus size: 30
15125556 TAAACTAAAA
*
15125566 TGAGCTAAGCTTTAGCTTGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * * *
15125596 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCGTGAGCTAAAGT
* *
15125626 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
15125656 TGAGCTA
1 TGAGCTA
15125663 GGAGTAAGCT
Statistics
Matches: 49, Mismatches: 15, Indels: 6
0.70 0.21 0.09
Matches are distributed among these distances:
29 2 0.04
30 41 0.84
31 6 0.12
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.29
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:15130757 original size:12 final size:12
Alignment explanation
Indices: 15130742--15130793 Score: 63
Period size: 12 Copynumber: 4.4 Consensus size: 12
15130732 CTTTTTTCGA
15130742 TTTTTTTTAA--
1 TTTTTTTTAATT
15130752 TTTTTTTTAATT
1 TTTTTTTTAATT
**
15130764 TTTTTTTCGATT
1 TTTTTTTTAATT
15130776 TTTTTTTTGAATT
1 TTTTTTTT-AATT
15130789 TTTTT
1 TTTTT
15130794 AACTTGTATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
10 10 0.29
12 17 0.49
13 8 0.23
ACGTcount: A:0.13, C:0.02, G:0.04, T:0.81
Consensus pattern (12 bp):
TTTTTTTTAATT
Found at i:15130758 original size:13 final size:13
Alignment explanation
Indices: 15130752--15130793 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
15130742 TTTTTTTTAA
15130752 TTTTTTTT-AA-T
1 TTTTTTTTCAATT
*
15130763 TTTTTTTTCGATT
1 TTTTTTTTCAATT
*
15130776 TTTTTTTTGAATT
1 TTTTTTTTCAATT
15130789 TTTTT
1 TTTTT
15130794 AACTTGTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 8 0.31
12 1 0.04
13 17 0.65
ACGTcount: A:0.12, C:0.02, G:0.05, T:0.81
Consensus pattern (13 bp):
TTTTTTTTCAATT
Found at i:15130793 original size:10 final size:10
Alignment explanation
Indices: 15130741--15130769 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
15130731 ACTTTTTTCG
15130741 ATTTTTTTTA
1 ATTTTTTTTA
15130751 ATTTTTTTTA
1 ATTTTTTTTA
15130761 ATTTTTTTT
1 ATTTTTTTT
15130770 TCGATTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (10 bp):
ATTTTTTTTA
Found at i:15134062 original size:779 final size:779
Alignment explanation
Indices: 15131926--15135038 Score: 5773
Period size: 779 Copynumber: 4.0 Consensus size: 779
15131916 CTTCATACAT
* *
15131926 GTGTGGGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATAAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
* *
15131991 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCTGAACATGCTCC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
*
15132056 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAGTCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
*
15132121 ATGTCCATTGTGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
15132186 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
* * *
15132251 ATAACTAAGGTGAACTAAATTTAATATGTAGGATATTAATTAGCTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
* *
15132316 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCTATGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
*
15132381 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCTGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
* *
15132446 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCTCGGTGAGCTAAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
*
15132511 AAGTTCGGCATGGATTTCCAAAATGGCCACTAATTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
*
15132576 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCAGGAGCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
*
15132641 CCCTTGAGGTAGCACCATCAGATTTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCAGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
* *
15132705 GTGTGAGTGTCCTTTGGCAGAATGGTCACCTTAGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
*
15132770 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCACACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
15132835 TAAGAGATTCAAGT-CCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGC-TTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
*
15132898 ATGTCCATTGCGTTTCTACAAGAAATGTGAACA-AATTAATTCAAACTAATATGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
* *
15132962 CAACATTAAATTCAGTTATGACAAATTTAATTATCATCAAGAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
*
15133027 ATAGCTAACGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
15133092 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
*
15133157 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTAGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
*
15133222 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGTTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
15133287 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
*
15133352 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTACACGAGCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
*
15133417 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCAGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
15133481 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
* *
15133546 GGAAACATTCATGAACCTTAAAAACATTGAATATGGTCATACATGCACTTGGCCGAACATGTACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
*
15133611 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTTAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
15133676 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
15133741 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
**
15133806 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTGGTTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
*
15133871 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAAATCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
15133936 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
*
15134001 TGGAGCTACATGGGAGCTAACTTGAACTGAAGTTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
15134066 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
15134131 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
* *
15134196 CCCTTGAGGTAGCACCATCGGATCTCGGCTTGGACTTGATTTATGGGAAGCCGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCAGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
15134260 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
1 GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
15134325 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
66 GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
*
15134390 TAAGAGATTCAAGTCCCCCAACTGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
131 TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
15134455 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
196 ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
* *
15134520 CAACATTAAATTTGGTTATGACAAATTTAATTATCATTAATAAACACTTTTAAGACATACTTAAT
261 CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
15134585 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
326 ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
15134650 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
391 AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
*
15134715 TAAACCCGAGCTGGGCCTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
456 TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
* * *
15134780 TGGAGCTACATAGGAGCTAACTTGAACTGAAGGTGAGCTCGGTGAGCTGAACTGAACTTCTAGAA
521 TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
*
15134845 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTTGTTCGATAGGTCTAGCATTGACATCATCC
586 AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
**
15134910 CACACATGCTGAACTAAAGCTATAATAGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
651 CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
*
15134975 CCCTTGAGGTAGCACCATCAGATCTCGGCTTGGACTTGACTTATGGGAAGCTGTGATCGTATCA
716 CCCTTGAGGTAGCACCATCAGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
15135039 ACCATAGCCG
Statistics
Matches: 2266, Mismatches: 65, Indels: 6
0.97 0.03 0.00
Matches are distributed among these distances:
776 671 0.30
777 79 0.03
778 82 0.04
779 1434 0.63
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.29
Consensus pattern (779 bp):
GTGTGAGTGTCCTTTGGCCGAATGGTCACCTTGGAGAATGAAGAGATAGCACACCATACATGAAT
GGAAACATTCATGAACCTTAAAGACATTGAATATGGTCATACATGCACTTGGCCGAACATGCACC
TAAGAGATTCAAGTCCCCCAACCGTCCATGCACCTTCAAAATTCATGCTTGCTTTTAATCTCCAT
ATGTCCATTGCGTTTCTACAAGAAATGTGAACAGAATTAATTCAAACTAATGTGAACACAAATAT
CAACATTAAATTCGGTTATGACAAATTTAATTATCATCAATAAACACTTTTAAGACATACTTAAT
ATAGCTAATGTGAACTAAATTTAATATGTAGGATATTAATTAACTAATTATTGAACTTATTAATT
AAAAAGTCAATAGTAGTCAAATGAATTCAAAGTGAACTCCACGAGCTGATGGTTAATTCATGAGC
TAAACCCGAGCTGGGCTTAAACTCGTGAGCTGATAATGAGCTGGTCCCGAGCTAATGAGCTGGTG
TGGAGCTACATGGGAGCTAACTTGAACTGAAGGTGAGCCCGGTGAGCTGAACTGAACTTGTAGAA
AAGTTCGGCATGGATTTCCAAAATGGCCACTAACTGGTTCGATAGGTCTAGCATTGACATCATCC
CACACATGCTGAACTAAAGCTATAACGGCTTCTTTAAATTGTTTTGCACGAGCCCTTGTGATCGG
CCCTTGAGGTAGCACCATCAGATCTCGGCTTGGACTTGACTTATGGGAAGCCGTGATCGTATCA
Found at i:15138015 original size:29 final size:29
Alignment explanation
Indices: 15137982--15138040 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
15137972 GTTTTCATGA
15137982 TTATGAAC-TTAT-ATTTTATTTTGGGACTT
1 TTATGAACTTTATGATTTTA-TTTGGG-CTT
*
15138011 TTATGGACTTTATGATTTTATTTGGGCTT
1 TTATGAACTTTATGATTTTATTTGGGCTT
15138040 T
1 T
15138041 AATTTTTGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 11 0.41
30 10 0.37
31 6 0.22
ACGTcount: A:0.20, C:0.07, G:0.17, T:0.56
Consensus pattern (29 bp):
TTATGAACTTTATGATTTTATTTGGGCTT
Found at i:15139367 original size:46 final size:46
Alignment explanation
Indices: 15139300--15139392 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
15139290 GAACGTCCTA
15139300 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
1 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
*
15139346 AATACAAGTGTTTGTTTATATGCCATCCATTGAACCTTAATCATGC
1 AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
15139392 A
1 A
15139393 TGCACCCTTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (46 bp):
AATACAAGTGTTTATTTATATGCCATCCATTGAACCTTAATCATGC
Found at i:15139750 original size:20 final size:19
Alignment explanation
Indices: 15139725--15139772 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
15139715 ATAAAGAAAA
15139725 TGAGCTGAAAAGTAGCTAAT
1 TGAGCTGAAAAG-AGCTAAT
* * *
15139745 TGAGCTCAAATGAGCTGAT
1 TGAGCTGAAAAGAGCTAAT
15139764 TCGAGCTGA
1 T-GAGCTGA
15139773 TTGGAGCTCG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (19 bp):
TGAGCTGAAAAGAGCTAAT
Found at i:15145058 original size:401 final size:400
Alignment explanation
Indices: 15143999--15145998 Score: 3752
Period size: 401 Copynumber: 5.0 Consensus size: 400
15143989 AAATACATGT
15143999 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
*
15144064 ATCGTTCAGTTTGTTCAAAAAAACTGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAAA-TGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
15144129 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
130 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
15144194 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
195 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
*
15144259 TGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
260 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
15144324 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
325 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
15144389 AAGAAAATCAA
390 AAGAAAATCAA
15144400 TGATACGAACCGCCTC-GGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
*
15144464 ATCGTTCGGTTTGTTCAAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTACTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTC-AAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
*
15144529 AATGAAGGGGTTAAAATATGAATATTAAGGTTTGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
130 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
15144594 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
195 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
15144659 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
260 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
*
15144724 AACGAAACAGGGTTGACGCCGCTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
325 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
15144789 AAGAAAATCAA
390 AAGAAAATCAA
* *
15144800 TGATACGAACCGCCTCGGGGAGAGTCAAGTCGTATACGAGTTTGCCCGATCGTCTACGACAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
* *
15144865 ATCGTTCGATTTGTTCACAAAAAATGTTTCTAAATAAATTATGTGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCA-AAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
*
15144930 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAATAATGGAAAGAAGG
130 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
*
15144995 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATTGACCCAAATGCTTATAGGCTTTCAAGG
195 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
15145060 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
260 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
15145125 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
325 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
15145190 AAGAAAATCAA
390 AAGAAAATCAA
* *
15145201 TGATACGAACCGCCTCGAGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGAAAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
15145266 ATCGTTCGGTTTGTTCAAAAAAGATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAA-ATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
* *
15145331 AATGAAGGGTTTAAAATATGAATATTAAGGTTCGTTTTAAAGTAAATGAAAGAATGGAAAGAAGG
130 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
15145396 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
195 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
* *
15145461 AGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAGTATATGGGTG
260 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
*
15145526 AACGAAACAGGGTCGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
325 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
15145591 AAGAAAATCAA
390 AAGAAAATCAA
* *
15145602 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATGCGAGTTTGCCCGATCGTCTACGAGAAAGT
1 TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
15145667 ATCGTTCGGTTTGTTCAAAAAAGATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
66 ATCGTTCGGTTTGTTCAAAAAA-ATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCA
15145732 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
130 AATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGG
15145797 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGC-TATAGGCTTTCAAGG
195 AACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGG
*
15145861 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCAGTATATGGGTG
260 CGAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTG
15145926 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
325 AACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAG
15145991 AAGAAAAT
390 AAGAAAAT
15145999 TCTCACAAGA
Statistics
Matches: 1562, Mismatches: 33, Indels: 9
0.97 0.02 0.01
Matches are distributed among these distances:
400 544 0.35
401 1018 0.65
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (400 bp):
TGATACGAACCGCCTCGGGGAGAGTCGAGTCGTATACGAGTTTGCCCGATCGTCTACGATAAAGT
ATCGTTCGGTTTGTTCAAAAAAATGTTTCTAAATAAATTATGCGGAAGCTATTCAAGGGGTTCAA
ATGAAGGGGTTAAAATATGAATATTAAGGTTCGGTTTAAAGTAAATGAAAGAATGGAAAGAAGGA
ACTCAAAAGCAAGCACGAACCAATATTAGAAAATATCGACCCAAATGCTTATAGGCTTTCAAGGC
GAAAATGAAAATGATAGAACCTCGACCCACTACTTAACAAAGTAGGAACCTCGGTATATGGGTGA
ACGAAACAGGGTTGACGCCACTACTAGGTAGATAAGTCAACAAAGTCTCAAACAAAGTTTAGAGA
AGAAAATCAA
Found at i:15147037 original size:30 final size:30
Alignment explanation
Indices: 15147003--15147099 Score: 99
Period size: 30 Copynumber: 3.2 Consensus size: 30
15146993 TTAAACTAAA
15147003 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
* * * * *
15147033 TGAGCTAAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCTAA-GCTTTAGCTCGTGAGCTAAAGT
* *
15147063 TGAGCTAAGGTTTAGCTCGTGAGTTGAAAG-
1 TGAGCTAAGCTTTAGCTCGTGAGCT-AAAGT
15147093 TGAGCTA
1 TGAGCTA
15147100 GGAGTGAGCT
Statistics
Matches: 52, Mismatches: 12, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
29 1 0.02
30 46 0.88
31 5 0.10
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
Found at i:15147415 original size:12 final size:12
Alignment explanation
Indices: 15147398--15147427 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
15147388 CAAACATTGA
15147398 ACACATTAAATC
1 ACACATTAAATC
15147410 ACACATTAAATC
1 ACACATTAAATC
15147422 ACACAT
1 ACACAT
15147428 AGATTCGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.50, C:0.27, G:0.00, T:0.23
Consensus pattern (12 bp):
ACACATTAAATC
Found at i:15147717 original size:20 final size:21
Alignment explanation
Indices: 15147664--15147717 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
15147654 GCTAAAAAGT
*
15147664 AGCT-AAATTGAGCTCAAACA
1 AGCTGAAATAGAGCTCAAACA
*
15147684 AGCTGAAATA-AGCTCAAACG
1 AGCTGAAATAGAGCTCAAACA
*
15147704 AGCTG-ATTAGAGCT
1 AGCTGAAATAGAGCT
15147718 TGGGGAGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 3 0.10
20 22 0.76
21 4 0.14
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (21 bp):
AGCTGAAATAGAGCTCAAACA
Found at i:15151693 original size:47 final size:47
Alignment explanation
Indices: 15151627--15152005 Score: 652
Period size: 47 Copynumber: 8.1 Consensus size: 47
15151617 GAAATGATAG
15151627 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15151674 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15151721 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15151768 TAAGGCCT-ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
15151814 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15151861 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15151908 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * *
15151955 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15152002 TAAG
1 TAAG
15152006 TCCCGAAGGG
Statistics
Matches: 316, Mismatches: 15, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 46 0.15
47 270 0.85
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:15151942 original size:187 final size:188
Alignment explanation
Indices: 15151627--15152005 Score: 661
Period size: 187 Copynumber: 2.0 Consensus size: 188
15151617 GAAATGATAG
*
15151627 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
15151692 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * *
15151757 TATATATGTGATAAGGCCTA-TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TATATATGTGACAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
15151814 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
15151879 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
** *
15151944 TATATATGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
131 TATATATGTGACAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
15152002 TAAG
1 TAAG
15152006 TCCCGAAGGG
Statistics
Matches: 181, Mismatches: 10, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
187 145 0.80
188 36 0.20
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (188 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATGTGACAAGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGCATAAATGTGA
Found at i:15152165 original size:37 final size:37
Alignment explanation
Indices: 15152124--15152202 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
15152114 CCAAGCTCTA
* *
15152124 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
15152161 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
15152198 AAGAC
1 AAGAC
15152203 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:15154077 original size:43 final size:43
Alignment explanation
Indices: 15154029--15154131 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
15154019 TTGGTTTTCA
15154029 GCACTAAGTGTGCGGGCAATAAGTGTTCAAGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCAAGGTTGTGAGATTG
* *
15154072 GCACTAAGTGTGTGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCAAGGTTGTGAGATTG
15154115 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
15154132 TTGAAATGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.23, C:0.14, G:0.36, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCAAGGTTGTGAGATTG
Found at i:15154148 original size:29 final size:29
Alignment explanation
Indices: 15154113--15154186 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
15154103 GTTGTGAGAT
* *
15154113 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
15154142 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
15154171 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
15154187 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:15154619 original size:40 final size:40
Alignment explanation
Indices: 15154575--15154678 Score: 154
Period size: 40 Copynumber: 2.6 Consensus size: 40
15154565 GAGTTACTAA
*
15154575 ATCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATAT
* **
15154615 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATAT
* *
15154655 ATCCGTGCTAAATCCCGAAGAGCA
1 ATCCGGGCTAAGTCCCGAAGAGCA
15154679 ATCATGCTGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 57 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTAATGCTAGTGATAT
Found at i:15154686 original size:80 final size:80
Alignment explanation
Indices: 15154534--15154691 Score: 201
Period size: 80 Copynumber: 2.0 Consensus size: 80
15154524 TAAGTGACCA
* * *
15154534 TATCCGGACTAAGATCCGAAGGCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCA
*
15154599 TTAATGCTAGTGATG
66 ATAATGCTAGTGATG
* * * * *
15154614 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGA-TATATCCGTGCTAAATCCCGAAGAGC
1 TATCCGGACTAAGATCCGAAG-GCATTCGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGC
* *
15154678 AATCATGCTGGTGA
65 AATAATGCTAGTGA
15154692 CGTGTATTCG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
80 53 0.80
81 13 0.20
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TATCCGGACTAAGATCCGAAGGCATTCGTGCGAGTGACTAAATCCGGGCTAAATCCCGAAGAGCA
ATAATGCTAGTGATG
Found at i:15156260 original size:11 final size:11
Alignment explanation
Indices: 15156244--15156268 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15156234 TGCCGTAACT
15156244 AGACAAAGAAA
1 AGACAAAGAAA
15156255 AGACAAAGAAA
1 AGACAAAGAAA
15156266 AGA
1 AGA
15156269 AAAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.08, G:0.20, T:0.00
Consensus pattern (11 bp):
AGACAAAGAAA
Found at i:15158150 original size:25 final size:25
Alignment explanation
Indices: 15158122--15158200 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
15158112 CTAATGGCCG
15158122 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
15158147 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
15158169 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
15158194 ATGTGAT
1 ATGTGAT
15158201 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:15158172 original size:47 final size:47
Alignment explanation
Indices: 15158106--15158297 Score: 285
Period size: 47 Copynumber: 4.1 Consensus size: 47
15158096 GAAATGATAG
15158106 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15158153 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15158200 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * * * *
15158247 CGGGGCCGAGTGGCCAACGTGATGGATGTGAAACTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
15158294 TAAG
1 TAAG
15158298 TCCCGAAGGG
Statistics
Matches: 131, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.31, C:0.10, G:0.31, T:0.27
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:15158472 original size:37 final size:37
Alignment explanation
Indices: 15158416--15158494 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
15158406 CCGAGCTCTA
* *
15158416 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
15158453 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
15158490 AAGAC
1 AAGAC
15158495 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:15164827 original size:14 final size:15
Alignment explanation
Indices: 15164810--15164846 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
15164800 AAAAAAATCG
15164810 AAAAAAAA-TTTCAA
1 AAAAAAAATTTTCAA
*
15164824 AAAAAAAATTTTGAA
1 AAAAAAAATTTTCAA
15164839 AAAAAAAA
1 AAAAAAAA
15164847 CAAAATCTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.19
Consensus pattern (15 bp):
AAAAAAAATTTTCAA
Found at i:15167326 original size:12 final size:12
Alignment explanation
Indices: 15167309--15167354 Score: 56
Period size: 12 Copynumber: 3.7 Consensus size: 12
15167299 TTATAAATTC
15167309 AAAAAAATCAAA
1 AAAAAAATCAAA
15167321 AAAAAAATCGAGAA
1 AAAAAAATC-A-AA
**
15167335 AAAAAAATTGAA
1 AAAAAAATCAAA
15167347 AAAAAAAT
1 AAAAAAAT
15167355 TTTGAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 19 0.63
13 1 0.03
14 10 0.33
ACGTcount: A:0.78, C:0.04, G:0.07, T:0.11
Consensus pattern (12 bp):
AAAAAAATCAAA
Found at i:15167336 original size:14 final size:13
Alignment explanation
Indices: 15167309--15167353 Score: 65
Period size: 14 Copynumber: 3.5 Consensus size: 13
15167299 TTATAAATTC
15167309 AAAAAAATC-AAA
1 AAAAAAATCGAAA
15167321 AAAAAAATCGAGAA
1 AAAAAAATCGA-AA
*
15167335 AAAAAAATTGAAA
1 AAAAAAATCGAAA
15167348 AAAAAA
1 AAAAAA
15167354 TTTTGAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
12 9 0.30
13 9 0.30
14 12 0.40
ACGTcount: A:0.80, C:0.04, G:0.07, T:0.09
Consensus pattern (13 bp):
AAAAAAATCGAAA
Found at i:15167359 original size:14 final size:12
Alignment explanation
Indices: 15167309--15167366 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 12
15167299 TTATAAATTC
**
15167309 AAAAAAATCAAA
1 AAAAAAATTGAA
*
15167321 AAAAAAATCGAGAA
1 AAAAAAAT--TGAA
15167335 AAAAAAATTGAA
1 AAAAAAATTGAA
15167347 AAAAAAATTTTGAA
1 AAAAAAA--TTGAA
15167361 AAAAAA
1 AAAAAA
15167367 TTGCATACGG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
12 18 0.46
14 21 0.54
ACGTcount: A:0.76, C:0.03, G:0.07, T:0.14
Consensus pattern (12 bp):
AAAAAAATTGAA
Found at i:15176120 original size:60 final size:59
Alignment explanation
Indices: 15175993--15176131 Score: 165
Period size: 60 Copynumber: 2.3 Consensus size: 59
15175983 TTTAGTGTTA
* * *
15175993 ACTGGGCCTTAGCCCAGATCAATATTAATCTGGGCCATAGCCCCTTACAGTAACAGAGTAT
1 ACTGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT-ACAGAGTAT
*
15176054 ACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCATAGCCCTATTACAAGT-C-GAGATAT
1 ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGTACAGAG-TAT
* *
15176114 ATTGGGCCTTGCCCATAT
1 ACTGGGCCTAGCCCATAT
15176132 TGACACAGTT
Statistics
Matches: 69, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
59 3 0.04
60 51 0.74
61 12 0.17
62 3 0.04
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (59 bp):
ACTGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGTACAGAGTAT
Found at i:15176149 original size:20 final size:19
Alignment explanation
Indices: 15176124--15176179 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
15176114 ATTGGGCCTT
*
15176124 GCCCATATTGACACAGTTGG
1 GCCCATATTAACACAGTT-G
* *
15176144 GCCCATTTTAATACAGTTG
1 GCCCATATTAACACAGTTG
* *
15176163 GCCCATAATAAAACAGT
1 GCCCATATTAACACAGT
15176180 CTCATATGAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 15 0.50
20 15 0.50
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (19 bp):
GCCCATATTAACACAGTTG
Found at i:15197860 original size:49 final size:49
Alignment explanation
Indices: 15197805--15198032 Score: 267
Period size: 49 Copynumber: 4.6 Consensus size: 49
15197795 ATCTGGTACG
* *
15197805 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
* * ** **
15197854 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACC-AATTATCCGATACA
* * * * * *
15197904 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-TTATCCGATACA
*
15197955 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
* * *
15198004 CATAGTAACCTACGCTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
15198033 ATGACCTCAC
Statistics
Matches: 150, Mismatches: 26, Indels: 6
0.82 0.14 0.03
Matches are distributed among these distances:
49 66 0.44
50 47 0.31
51 37 0.25
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCAATTATCCGATACA
Found at i:15197980 original size:101 final size:98
Alignment explanation
Indices: 15197805--15198032 Score: 285
Period size: 101 Copynumber: 2.3 Consensus size: 98
15197795 ATCTGGTACG
* * *
15197805 CATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACT
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCGGTACACATAGTAGCCTGCACT
* **
15197870 TAGTACTACACACGTGACCTAACCATTTGATACA
66 TAGTACTACACACGCGACC-AACCATCCGATACA
* * * *
15197904 CGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGTTATCGGGTACGCATAGTAGCCTGCA
1 CATAGTAGCCTGCACTTAGTACTACACACGCGA-CAAA-TTATCCGGTACACATAGTAGCCTGCA
* **
15197969 CTTAGTACTACACATGCGACCAATTATCCGATACA
64 CTTAGTACTACACACGCGACCAACCATCCGATACA
* * *
15198004 CATAGTAACCTACGCTTAGTACTACACAC
1 CATAGTAGCCTGCACTTAGTACTACACAC
15198033 ATGACCTCAC
Statistics
Matches: 110, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 30 0.27
100 38 0.35
101 42 0.38
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.25
Consensus pattern (98 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACAAATTATCCGGTACACATAGTAGCCTGCACT
TAGTACTACACACGCGACCAACCATCCGATACA
Found at i:15198321 original size:28 final size:28
Alignment explanation
Indices: 15198264--15198318 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
15198254 AGGTACAACC
* * *
15198264 CATGTAATAGTAATTTTAACATTTAATT
1 CATGTAACAATAATTTTAACATTCAATT
*
15198292 CATGTAACAATAATTTT-CCATTCAATT
1 CATGTAACAATAATTTTAACATTCAATT
15198319 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 8 0.35
28 15 0.65
ACGTcount: A:0.38, C:0.13, G:0.05, T:0.44
Consensus pattern (28 bp):
CATGTAACAATAATTTTAACATTCAATT
Found at i:15202603 original size:33 final size:33
Alignment explanation
Indices: 15202566--15202631 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
15202556 GAATAAATTA
*
15202566 CTCCCCCT-TAATAAAATTCATTTTCCATTTAAG
1 CTCCCCCTAT-ATAAAATTCATTTTCAATTTAAG
*
15202599 CTCCCCCTATATAAAATTCGTTTTCAATTTAAG
1 CTCCCCCTATATAAAATTCATTTTCAATTTAAG
15202632 GCTTAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (33 bp):
CTCCCCCTATATAAAATTCATTTTCAATTTAAG
Found at i:15204900 original size:38 final size:39
Alignment explanation
Indices: 15204835--15204911 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 39
15204825 TTTAACCTTA
15204835 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
* * *
15204874 CAAC-TCCCTTAAGGTTTTTACTCAAAATCTTAAGATTG
1 CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
15204912 AATTCTCTCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 31 0.89
39 4 0.11
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (39 bp):
CAACATCCCTTAAGATTTCTACCCAAAATCTTAAGATTG
Found at i:15205349 original size:20 final size:19
Alignment explanation
Indices: 15205326--15205370 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 19
15205316 AATTATCGAA
15205326 ACTTGGTAAAAGGTATCTAT
1 ACTTGGT-AAAGGTATCTAT
*
15205346 ACTTTTTGTAAAGGTATCTAT
1 AC--TTGGTAAAGGTATCTAT
15205367 ACTT
1 ACTT
15205371 TTTGTGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 2 0.09
20 2 0.09
21 14 0.64
22 4 0.18
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (19 bp):
ACTTGGTAAAGGTATCTAT
Found at i:15205360 original size:21 final size:21
Alignment explanation
Indices: 15205334--15205375 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
15205324 AAACTTGGTA
15205334 AAAGGTATCTATACTTTTTGT
1 AAAGGTATCTATACTTTTTGT
15205355 AAAGGTATCTATACTTTTTGT
1 AAAGGTATCTATACTTTTTGT
15205376 GTAAATTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.48
Consensus pattern (21 bp):
AAAGGTATCTATACTTTTTGT
Found at i:15205614 original size:22 final size:24
Alignment explanation
Indices: 15205586--15205629 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
15205576 ATTTTGTTCA
15205586 ACTTTAACTT-TTAT-TCAAAAGC
1 ACTTTAACTTCTTATATCAAAAGC
*
15205608 ACTTTAATTTCTTATATCAAAA
1 ACTTTAACTTCTTATATCAAAA
15205630 CATATTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (24 bp):
ACTTTAACTTCTTATATCAAAAGC
Found at i:15208510 original size:17 final size:18
Alignment explanation
Indices: 15208488--15208522 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15208478 CTAATTAGAC
15208488 CGTGTGGG-CCACACGGG
1 CGTGTGGGCCCACACGGG
15208505 CGTGTGGGCCCACACGGG
1 CGTGTGGGCCCACACGGG
15208523 TGAACCACGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.11, C:0.31, G:0.46, T:0.11
Consensus pattern (18 bp):
CGTGTGGGCCCACACGGG
Found at i:15210205 original size:41 final size:45
Alignment explanation
Indices: 15210100--15210207 Score: 109
Period size: 45 Copynumber: 2.5 Consensus size: 45
15210090 ATGTGTTTTT
* * * *
15210100 GTGTAAGACCAC-ATGTGGGACGTTGGCATCGATATATGTGGTTAC
1 GTGTAAGACC-CTATCTGGGACATCGGCATCGATATATGTGATTAC
* *
15210145 GTGTAAGACCATGTCTGGGACATCGGCATC-ATAT-T-TGATT-C
1 GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
*
15210186 GTGTAAGACCCTATTTGGGACA
1 GTGTAAGACCCTATCTGGGACA
15210208 GTGGTATTGA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
41 20 0.38
42 4 0.08
43 1 0.02
44 4 0.08
45 24 0.45
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (45 bp):
GTGTAAGACCCTATCTGGGACATCGGCATCGATATATGTGATTAC
Found at i:15219550 original size:33 final size:33
Alignment explanation
Indices: 15219500--15219599 Score: 173
Period size: 33 Copynumber: 3.0 Consensus size: 33
15219490 GGGGTGGGGT
*
15219500 TGGTGCTATGATGGAGGAAGTTTTCTGCAAGGC
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
* *
15219533 TGGTCCTATGATAGAGGAAGTTTTCTGCAAGGA
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
15219566 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
1 TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
15219599 T
1 T
15219600 CTTAAGGCTG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.24, C:0.12, G:0.33, T:0.31
Consensus pattern (33 bp):
TGGTGCTATGATAGAGGAAGTTTTCTGCAAGGC
Found at i:15223213 original size:16 final size:16
Alignment explanation
Indices: 15223192--15223224 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
15223182 ACTTATGTCT
15223192 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
15223208 ATTAGAAGCCACCTAA
1 ATTAGAAGCCACCTAA
15223224 A
1 A
15223225 GATGATCGCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.12, T:0.18
Consensus pattern (16 bp):
ATTAGAAGCCACCTAA
Found at i:15227143 original size:85 final size:87
Alignment explanation
Indices: 15226981--15227148 Score: 218
Period size: 85 Copynumber: 2.0 Consensus size: 87
15226971 CCAGAATATG
* * * * * *
15226981 TTTTCGTGTAAGACCACGTCTGGGACGTTGGTATCGACTTTTGTTTTACGTGTAAGACCATGTTT
1 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCAACGACTTTTGTATTACATGTAAGACAACGTTT
*
15227046 GGGACATTGGCATTGTATCTGA
66 GAGACATTGGCATTGTATCTGA
*
15227068 TTTT-GTGTAAGACC-CTGTCTGGGACAG-TGGCAACGATTTTTG-ATTACATGTAAGACAACGT
1 TTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCAACGACTTTTGTATTACATGTAAGACAACGT
15227129 TTGAGACATTGGCATTGTAT
64 TTGAGACATTGGCATTGTAT
15227149 AGGTTCTTTG
Statistics
Matches: 71, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
85 35 0.49
86 31 0.44
87 5 0.07
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.36
Consensus pattern (87 bp):
TTTTCGTGTAAGACCACGTCTGGGACGTTGGCAACGACTTTTGTATTACATGTAAGACAACGTTT
GAGACATTGGCATTGTATCTGA
Found at i:15234676 original size:42 final size:42
Alignment explanation
Indices: 15234611--15234737 Score: 130
Period size: 42 Copynumber: 3.0 Consensus size: 42
15234601 GACTTCTATT
* *
15234611 TTACGTGTAAGACCATGTGTGGGACATTGGCATCGTATCTGA
1 TTACGTGTAAGACCCTGTCTGGGACATTGGCATCGTATCTGA
* * * * *
15234653 TTTCGTGTAAGACCCTATCTGGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCCTGTCTGGGACATTGGCATCG-TATCTGA
* * * *
15234696 TTACGTGAAAGACCAC-GTCTGGGACGTTGGCATTGTCTCTGA
1 TTACGTGTAAGACC-CTGTCTGGGACATTGGCATCGTATCTGA
15234738 GCTATCCGCT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
42 35 0.51
43 32 0.47
44 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCCTGTCTGGGACATTGGCATCGTATCTGA
Found at i:15242378 original size:603 final size:602
Alignment explanation
Indices: 15241239--15242445 Score: 1820
Period size: 603 Copynumber: 2.0 Consensus size: 602
15241229 CGAGCAATCC
* *
15241239 CACACCTAAAACAACAATTAACACCACCAGTTTCAGTAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
* *
15241304 AACCGCAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACGAACATATAC
66 AACCACAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACATATAC
* * * *
15241369 TATGCAAAACCTAAGGCATTGGACGAACAACCAACTGCTCTCGATTTTCACTTAACAATGTGCAA
131 TACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
* * *
15241434 ACAATTTGATTAAACAACTAAAACCCTGATTTCACTGCAAGATCACAACACACTAGCCAAAAACA
196 ACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCCAAAAACA
*
15241499 AAAAGAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
261 AAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
*
15241564 CAAAAAATCATGAGCAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAGATTGAA
326 CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAGATTGAA
* *
15241629 GAAAGAAAGAAAAGAACCAGAAAATCAAAGAATGGAACTGCTGGCACATGGGAAAAAACGACTTG
391 GAAAGAAAGAAAAGAACCAGAAAATCAAAGAATGGAACTACTGGCACATGGGAAAAAACGACGTG
*
15241694 AATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAGAGCTATTTTTGGGGAACAAGAAAAAT
456 AATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAGAGCTATTTTTGGGGAAAAAGAAAAAT
* *
15241759 ACTAAAGTCAAATAAATT-A-A-A-ACAAAAAAAAAGATCATGTTGAACAAACTTCTACAACTAA
521 ACTAAAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTACAACTAA
15241820 TCCAACTCATCAGAATT
586 TCCAACTCATCAGAATT
15241837 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
1 CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
* * * * *
15241902 AACCACAA-CTTAACTACAATAGCCTTATAAAAAAACACATCCTCACACTTACCATTTAACAAAC
66 AACCACAATC-AAACTACAACAGCCCTACAAAAAAACACATCCTCACAC-T----TTGAACAAAC
** * **
15241966 A-ACTACTACGCAAAACCTAAGGTGCTAGAGGAACAACCAACTGCTCTCGATTTTCACCTAACTG
125 ATA-TACTACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAA
* * *
15242030 TGTGCAAACAATTAGATTAAACAGCTAAAACCCCGATTACACTGCAAGATCACAACATAGTAGCC
189 TGTGCAAACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCC
*
15242095 -AAAACAAAAACAAGAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACA
254 AAAAACAAAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACA
* ** * *
15242159 ACGACCACAAAAAATTGTGAACAAAAGATCCAAGGAATTTTATCAAGATTCAATAGAAAAACAAA
319 ACAACCACAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAA
* * * *
15242224 GATTGAAGAAAGAAAGAAAAATAATCA-AAGAATTAGAGAATGGAACTACTGGCACATGGGAAAA
384 GATTGAAGAAAGAAAG-AAAAGAACCAGAA-AATCAAAGAATGGAACTACTGGCACATGGGAAAA
* ** * * *
15242288 AACGACGTGAATAGTGGGGTTTTGGGGAAACAAATGTGATGTTAAT-GAAGTTATTTTTGGGGAA
447 AACGACGTGAATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAG-AGCTATTTTTGGGGAA
*
15242352 AAAGAAAAATACTAGAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTT
511 AAAGAAAAATACTAAAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTT
*
15242417 CTACAACTAATCCAACTCATCAGGATT
576 CTACAACTAATCCAACTCATCAGAATT
15242444 CA
1 CA
15242446 AAATTTCCCT
Statistics
Matches: 546, Mismatches: 49, Indels: 19
0.89 0.08 0.03
Matches are distributed among these distances:
597 1 0.00
598 104 0.19
599 1 0.00
602 141 0.26
603 240 0.44
604 1 0.00
605 1 0.00
606 1 0.00
607 56 0.10
ACGTcount: A:0.47, C:0.20, G:0.13, T:0.20
Consensus pattern (602 bp):
CACACCTAAAACAACAATTAACACCACCAATTTCAATAATAATTAGTGAAATTTAACTAATAATC
AACCACAATCAAACTACAACAGCCCTACAAAAAAACACATCCTCACACTTTGAACAAACATATAC
TACGCAAAACCTAAGGCACTAGACGAACAACCAACTGCTCTCGATTTTCACCTAACAATGTGCAA
ACAATTAGATTAAACAACTAAAACCCCGATTACACTGCAAGATCACAACACACTAGCCAAAAACA
AAAACAAAAACCCAACCTTCCCAAATATCACAACTTACCAGATGACTCAATAGCAACAACAACCA
CAAAAAATCATGAACAAAAGATCCAAGGAATTTAATCAAGATTCAATAGAAAAAAAAAGATTGAA
GAAAGAAAGAAAAGAACCAGAAAATCAAAGAATGGAACTACTGGCACATGGGAAAAAACGACGTG
AATAGTGGGGTCTCAGGGAAACAAACGTGAAGTTAATAGAGCTATTTTTGGGGAAAAAGAAAAAT
ACTAAAGTCAAATAAATTAACACACACAAAAAAAAAGATCATGCTGAAAAAACTTCTACAACTAA
TCCAACTCATCAGAATT
Found at i:15244471 original size:3 final size:3
Alignment explanation
Indices: 15244458--15244497 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
15244448 ATCGATATCA
*
15244458 CCT CTT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT C
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT CCT C
15244498 ATCTTCTTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (3 bp):
CCT
Found at i:15247246 original size:38 final size:38
Alignment explanation
Indices: 15247204--15247277 Score: 148
Period size: 38 Copynumber: 1.9 Consensus size: 38
15247194 CTATTTGGTT
15247204 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
1 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
15247242 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAG
1 GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAG
15247278 CTTTAGGCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.23, G:0.30, T:0.18
Consensus pattern (38 bp):
GAGCACTACCAACACTCGCGATAGAAGTGGTGTGAGTC
Found at i:15249996 original size:48 final size:47
Alignment explanation
Indices: 15249929--15250490 Score: 504
Period size: 48 Copynumber: 11.6 Consensus size: 47
15249919 TAAATTGCCA
* * *
15249929 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACATGTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* * * * * *
15249977 ATTCCATGTCCCAGACATGGTCTTACACTAGCTCTA-GTCTCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAT-GAGGCCG
* * * *
15250025 ATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAAT-ATGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGA-GGCCG
* *
15250073 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATGTCGAGGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* * * * * * * *
15250121 ATTCCATATCCCAGACATGGTCTTACACTAGCTCTA-GTCTCAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAT-GAGGCCG
* * * * *
15250169 ATGCCATGTCCTAAACATGGTCTTACACTGGCTCTCATAATGTGGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGAGGCCG
* *
15250217 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACAT-ATGAGGCCG
*
15250265 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACAT-ATGAGGCCG
* * *
15250313 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATATAATATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-GCTCA-CATAT--GA-GGCCG
* * *
15250366 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-ATGAGGCCG
* * * * *
15250414 ATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAT-GAGGCCG
* *
15250462 ATGCCATATCACAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
15250491 ATCACACATA
Statistics
Matches: 428, Mismatches: 67, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
47 4 0.01
48 369 0.86
49 7 0.02
50 7 0.02
51 7 0.02
52 1 0.00
53 33 0.08
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATATGAGGCCG
Found at i:15250189 original size:144 final size:144
Alignment explanation
Indices: 15249929--15250490 Score: 699
Period size: 144 Copynumber: 3.9 Consensus size: 144
15249919 TAAATTGCCA
* * *
15249929 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCACAT-GTCGAGGCCAATTCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT-GAGGCCAATGCCATGTCCCAGAC
15249993 ATGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCT
65 ATGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCT
15250058 CTCATAATATGGCTG
130 CTCATAATATGGCTG
* * *
15250073 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-GTCGAGGCCAATTCCATATCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAAT-GAGGCCAATGCCATGTCCCAGAC
*
15250137 ATGGTCTTACACTAGCTCTAGTCTCAATGCCAATGCCATGTCCTAAACATGGTCTTACACTGGCT
65 ATGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCT
*
15250202 CTCATAATGTGGCTG
130 CTCATAATATGGCTG
* * *
15250217 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTA-ATAATGTGGCCGATGCCATGTCCCAGAC
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACATAATGAGGCCAATGCCATGTCCCAGAC
* * * * *
15250281 ATGGTCTTACACTGGCTCTA--AT-AATGTGGCCGATGCCATGTCCCAGACATGGTCTTACACTA
65 ATGGTCTTACACTAGCTCTAGTCTCAA--T-GCCGATGCCATGTCCTAAACATGGTCTTACACTG
*
15250343 GCTCTCATAATATAATATGGCCG
127 GCTCTC-----ATAATATGGCTG
* * * * *
15250366 ATGCCATGTCCCGGACATGGTCTTACACTGGCTCTCATAATGTGGCCGATGCCATGTCCCAAACA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCAATGCCATGTCCCAGACA
* * * * * *
15250431 TGGTCTTACACTAGCAC-ACATATCAACGCCGATGCCATATCAC-AGACATGGTCTTACACT
66 TGGTCTTACACTAGCTCTA-GTCTCAATGCCGATGCCATGTC-CTAAACATGGTCTTACACT
15250491 ATCACACATA
Statistics
Matches: 376, Mismatches: 26, Indels: 27
0.88 0.06 0.06
Matches are distributed among these distances:
141 2 0.01
142 1 0.00
143 1 0.00
144 249 0.66
145 2 0.01
148 1 0.00
149 115 0.31
150 1 0.00
151 2 0.01
152 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.27
Consensus pattern (144 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAATGAGGCCAATGCCATGTCCCAGACA
TGGTCTTACACTAGCTCTAGTCTCAATGCCGATGCCATGTCCTAAACATGGTCTTACACTGGCTC
TCATAATATGGCTG
Found at i:15250497 original size:48 final size:48
Alignment explanation
Indices: 15250410--15250503 Score: 152
Period size: 48 Copynumber: 2.0 Consensus size: 48
15250400 TCATAATGTG
* *
15250410 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCAAC
1 GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCAAC
* *
15250458 GCCGATGCCATATCACAGACATGGTCTTACACTATCACACATATCA
1 GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCA
15250504 CCCATATGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (48 bp):
GCCGATGCCATATCACAAACATGGTCTTACACTAGCACACATATCAAC
Found at i:15252072 original size:14 final size:14
Alignment explanation
Indices: 15252053--15252088 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
15252043 TTAAAAATAA
15252053 AAATAAAATAAAAT
1 AAATAAAATAAAAT
* *
15252067 AAATAAAGTTAAAT
1 AAATAAAATAAAAT
15252081 AAATAAAA
1 AAATAAAA
15252089 AAGACACAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (14 bp):
AAATAAAATAAAAT
Found at i:15253952 original size:10 final size:11
Alignment explanation
Indices: 15253937--15253978 Score: 70
Period size: 10 Copynumber: 4.0 Consensus size: 11
15253927 TCTGAATATC
15253937 CATTT-AGGTA
1 CATTTAAGGTA
15253947 CATTTAAGGTA
1 CATTTAAGGTA
15253958 CATTT-AGGTA
1 CATTTAAGGTA
15253968 CATTTAAGGTA
1 CATTTAAGGTA
15253979 AGCATACAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 15 0.50
11 15 0.50
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (11 bp):
CATTTAAGGTA
Found at i:15253963 original size:21 final size:21
Alignment explanation
Indices: 15253937--15253978 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
15253927 TCTGAATATC
15253937 CATTTAGGTACATTTAAGGTA
1 CATTTAGGTACATTTAAGGTA
15253958 CATTTAGGTACATTTAAGGTA
1 CATTTAGGTACATTTAAGGTA
15253979 AGCATACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
CATTTAGGTACATTTAAGGTA
Found at i:15254001 original size:11 final size:11
Alignment explanation
Indices: 15253985--15254010 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15253975 GGTAAGCATA
15253985 CAAAGCATATC
1 CAAAGCATATC
15253996 CAAAGCATATC
1 CAAAGCATATC
15254007 CAAA
1 CAAA
15254011 CTGAATTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.27, G:0.08, T:0.15
Consensus pattern (11 bp):
CAAAGCATATC
Found at i:15254387 original size:25 final size:25
Alignment explanation
Indices: 15254359--15254407 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
15254349 AAGCTCCTCC
15254359 GAGCTGAATAACGGTAAGCTCATAT
1 GAGCTGAATAACGGTAAGCTCATAT
** *
15254384 GAGCTGGGTATCGGTAAGCTCATA
1 GAGCTGAATAACGGTAAGCTCATA
15254408 AGAGTTGTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (25 bp):
GAGCTGAATAACGGTAAGCTCATAT
Found at i:15259426 original size:38 final size:38
Alignment explanation
Indices: 15259320--15259453 Score: 128
Period size: 38 Copynumber: 3.4 Consensus size: 38
15259310 TCTAAGCTAG
* * * * *
15259320 GACATATTTAAAACAT-ATATTTAAGATGTCCTAAACTAT
1 GACATAATTAAAAC-TCATATTAAAAATGTTC-AAATTAT
* * *
15259359 GACATAATTAAAAACCCTTATTAAAAATGTTCAGATTAT
1 GACATAATT-AAAACTCATATTAAAAATGTTCAAATTAT
15259398 GACATAATTAAAACTCATA-TAAATAATGTTCAAATTAT
1 GACATAATTAAAACTCATATTAAA-AATGTTCAAATTAT
*
15259436 GGCATAATTAAATACTCA
1 GACATAATTAAA-ACTCA
15259454 AACTAATTTT
Statistics
Matches: 79, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
37 4 0.05
38 32 0.41
39 27 0.34
40 16 0.20
ACGTcount: A:0.46, C:0.13, G:0.07, T:0.34
Consensus pattern (38 bp):
GACATAATTAAAACTCATATTAAAAATGTTCAAATTAT
Found at i:15261105 original size:25 final size:25
Alignment explanation
Indices: 15261073--15261181 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 25
15261063 AGCTGTAAAT
*
15261073 GGTAAGCTCCTCCGAGCTGAATTAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* *
15261098 GGTAAGCTCCTCCGAGCTAAATAAA
1 GGTAAGCTCCTCCGAGCTGAATAAC
* *
15261123 GGTAAGCTCCTCTGAGTTGAATAAC
1 GGTAAGCTCCTCCGAGCTGAATAAC
* ** * * *
15261148 GGTAATCTTATACGAGCTGAGTATC
1 GGTAAGCTCCTCCGAGCTGAATAAC
15261173 GGTAAGCTC
1 GGTAAGCTC
15261182 ATAAGAGCTA
Statistics
Matches: 67, Mismatches: 17, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (25 bp):
GGTAAGCTCCTCCGAGCTGAATAAC
Found at i:15261164 original size:50 final size:51
Alignment explanation
Indices: 15261054--15261165 Score: 131
Period size: 50 Copynumber: 2.3 Consensus size: 51
15261044 GTACATGTAT
* *
15261054 GCTCATACGAGCT--GTAAATGGTAAGCTCCTCCGAGCTGAATTACGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* * * *
15261103 GCTCCTCCGAGCTAAATAAA-GGTAAGCTCCTCTGAGTTGAATAACGGTAA
1 GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
* *
15261153 TCTTATACGAGCT
1 GCTCATACGAGCT
15261166 GAGTATCGGT
Statistics
Matches: 51, Mismatches: 10, Indels: 3
0.80 0.16 0.05
Matches are distributed among these distances:
49 11 0.22
50 36 0.71
51 4 0.08
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (51 bp):
GCTCATACGAGCTAAATAAATGGTAAGCTCCTCCGAGCTGAATAACGGTAA
Found at i:15264090 original size:46 final size:45
Alignment explanation
Indices: 15264037--15264208 Score: 188
Period size: 46 Copynumber: 3.7 Consensus size: 45
15264027 TGGGCATCTG
15264037 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCC
*** * * *
15264083 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-TCCG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAGTCCC
*
15264130 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-GTCCC
*
15264175 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
15264209 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 62 0.59
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAGTCCC
Found at i:15264188 original size:93 final size:93
Alignment explanation
Indices: 15264029--15264200 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
15264019 AGGATATTTG
* *
15264029 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
15264094 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
15264122 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCGAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCC-AACTCGTTGA
15264186 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
15264201 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 3 0.04
93 71 0.96
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:15272827 original size:45 final size:46
Alignment explanation
Indices: 15272695--15272816 Score: 165
Period size: 48 Copynumber: 2.6 Consensus size: 46
15272685 GGTTATTTGT
* *
15272695 GATCCCATGTAAGACCATGTCTAGGTCATGGCATTGGCATTGTCATGC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTG--ATGC
* * * *
15272743 GATCCCATGTAAAACCATTTTTGGAACATGGCATTGGCATTG-TGC
1 GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATGC
15272788 GATCCCATGTAAGACCATGTCTGGGACAT
1 GATCCCATGTAAGACCATGTCTGGGACAT
15272817 CATATTGGCA
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
45 28 0.44
48 36 0.56
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (46 bp):
GATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATGC
Found at i:15281173 original size:15 final size:15
Alignment explanation
Indices: 15281153--15281183 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15281143 GTATGTACCA
15281153 ATTCCATTATGATAT
1 ATTCCATTATGATAT
15281168 ATTCCATTATGATAT
1 ATTCCATTATGATAT
15281183 A
1 A
15281184 GCCTATGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.45
Consensus pattern (15 bp):
ATTCCATTATGATAT
Found at i:15287213 original size:48 final size:48
Alignment explanation
Indices: 15287138--15287404 Score: 201
Period size: 48 Copynumber: 5.6 Consensus size: 48
15287128 CATGGTAACG
**
15287138 TGCCAATGCCAAATCCCAGATATGGTCTTACATGGGACCATATATCGA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCATATATCGA
*
15287186 TGCCAATGCCATGTCCCAGATAGGGTCTTACATGGGATCACATATATCGA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGA-C-CATATATCGA
* * * * *
15287236 AGCCGAT---A-G-CCCA-ACTATGGTCTTACACGATGTCC-TATATCGA
1 TGCCAATGCCATGTCCCAGA-TATGGTCTTACATG-GGACCATATATCGA
* * * * * *
15287279 TGCCAATGCCATGTCCCGGACATGGTCTTACATGGAATCACATAACGA
1 TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCATATATCGA
* * * * * * * *
15287327 TGCAAAAGCCATGTCCCAAACATGG-CTTTATATGAGATC-TCACATCGA
1 TGCCAATGCCATGTCCCAGATATGGTC-TTACATGGGACCAT-ATATCGA
* *
15287375 TGCCGATGCCATATCCCAGATATGGTCTTA
1 TGCCAATGCCATGTCCCAGATATGGTCTTA
15287405 TACGGGATCT
Statistics
Matches: 169, Mismatches: 36, Indels: 28
0.73 0.15 0.12
Matches are distributed among these distances:
43 13 0.08
44 2 0.01
45 17 0.10
46 3 0.02
47 4 0.02
48 112 0.66
49 3 0.02
50 15 0.09
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (48 bp):
TGCCAATGCCATGTCCCAGATATGGTCTTACATGGGACCATATATCGA
Found at i:15287798 original size:67 final size:67
Alignment explanation
Indices: 15287690--15287824 Score: 261
Period size: 67 Copynumber: 2.0 Consensus size: 67
15287680 CTATAATAGC
15287690 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
15287755 CA
66 CA
*
15287757 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTGTAAAATTA
1 AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
15287822 CA
66 CA
15287824 A
1 A
15287825 TTTTACCCCT
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.41, C:0.16, G:0.02, T:0.40
Consensus pattern (67 bp):
AAATTTCACTTATTTAATTATCACATTATTCAAACCAGTCCATAAATCATATTTTTATAAAATTA
CA
Found at i:15289219 original size:58 final size:58
Alignment explanation
Indices: 15289129--15289246 Score: 184
Period size: 58 Copynumber: 2.0 Consensus size: 58
15289119 ACCTCAATAA
15289129 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGACG-AAAAGTGAGTTC
1 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGA-GAAAAAGTGAGTTC
** *
15289187 GTTTGTGTAACTTACAAGTGTTATCTTTATGTTTCAGGTATTGAGAAAAAAGTGAGTTC
1 GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGAG-AAAAAGTGAGTTC
15289246 G
1 G
15289247 CCAAGAGAGA
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
57 1 0.02
58 41 0.75
59 13 0.24
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.39
Consensus pattern (58 bp):
GTTTGTGTAACTTACAAGCATTATCTTTATGTTTCAGGGATTGAGAAAAAGTGAGTTC
Found at i:15291308 original size:6 final size:6
Alignment explanation
Indices: 15291297--15291341 Score: 81
Period size: 6 Copynumber: 7.5 Consensus size: 6
15291287 CAATTAATAG
*
15291297 AGATGT AGATGT AGATGT AGATGT AGATGT AGATGT AGAGGT AGA
1 AGATGT AGATGT AGATGT AGATGT AGATGT AGATGT AGATGT AGA
15291342 ATTAACAACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.36, C:0.00, G:0.36, T:0.29
Consensus pattern (6 bp):
AGATGT
Found at i:15293946 original size:39 final size:40
Alignment explanation
Indices: 15293901--15294072 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
15293891 GCTCCTCGTT
* * *
15293901 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
15293941 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
15293980 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
15294020 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
*
15294060 CAAAAGCCTTCGG
1 CAAATGCCTTCGG
15294073 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:15294001 original size:40 final size:39
Alignment explanation
Indices: 15293903--15294125 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
15293893 TCCTCGTTCA
* * * *
15293903 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
15293942 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
15293981 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
15294021 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
* ** * * * *
15294061 AAAAGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
15294102 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
15294126 CAGCATTCAA
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 106 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:15294134 original size:41 final size:41
Alignment explanation
Indices: 15294057--15294134 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
15294047 TTTGTATCTC
* * *
15294057 GCACAAAAGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
15294098 GCAC-AAAGCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAAGCCTTC-GGATCTTAGCCCGGACA-CATTCA
15294135 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 20 0.62
41 12 0.38
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (41 bp):
GCACAAAAGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:15297251 original size:45 final size:45
Alignment explanation
Indices: 15297186--15297400 Score: 217
Period size: 45 Copynumber: 4.9 Consensus size: 45
15297176 TGTACAGTAC
* *
15297186 TATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
15297231 TATTCGGGCCTTTGAACCTAGTAGGCTACAATGCCGGTGAGACAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * * *
15297276 TATCCGGGCCTTGGAACCTAGTAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
* * * *
15297321 TATTCGGGCC-TCGAGCCTAGCAGGC-AAAATACCGGTGA-ATGA-
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGAT-AT
* ** * *
15297363 -ATTCGAGTTTTTAAACCTAGCAGGCTA-AATGTCGGTGA
1 TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGA
15297401 TTTGATAAAA
Statistics
Matches: 142, Mismatches: 25, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
41 6 0.04
42 23 0.16
43 12 0.08
44 12 0.08
45 89 0.63
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAACCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:15309034 original size:48 final size:48
Alignment explanation
Indices: 15308917--15309231 Score: 279
Period size: 48 Copynumber: 6.6 Consensus size: 48
15308907 TGATATGTGT
* * * * * *
15308917 GCTAGTGTAAGACTATGTCTGGGAAATGGCAACAGCCACATTAT-GGA-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GGCATATTATAAGAG
* *
15308964 ACCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATATTATAAGAG
* * *
15309013 GC-AGTGTAAGACCATGTCTGGGACATGGCATTGGC-GATTATGAGA-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATAAGAG
* * * * * * * *
15309058 GCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCGT-TGATATGTG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATAAGAG
* * *
15309105 TGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA-
1 -GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATATTATAAGAG
* * *
15309154 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCAT-TGAGACA-AG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATA-AGAG
*
15309201 AGCTAGTGTAAGACCATGTCTAGGACATGGC
1 -GCTAGTGTAAGACCATGTCTGGGACATGGC
15309232 GTCGATAATT
Statistics
Matches: 219, Mismatches: 37, Indels: 23
0.78 0.13 0.08
Matches are distributed among these distances:
45 2 0.01
46 46 0.21
47 39 0.18
48 127 0.58
49 2 0.01
50 3 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATATTATAAGAG
Found at i:15309175 original size:142 final size:142
Alignment explanation
Indices: 15308967--15309231 Score: 419
Period size: 142 Copynumber: 1.9 Consensus size: 142
15308957 TTATGGAACC
* *
15308967 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATAAGAGGCAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGGCAGTGTAAGACCATGTCT
15309032 GGGACATGGCATTGGCGATT-ATG-AGAGCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCG
66 GGGACATGGCATTGGC-ATTGA-GAAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCG
15309095 TTGATATGTGTGCT
129 TTGATATGTGTGCT
*
15309109 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGA-GCTAGTGTAAGACCATGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGGC-AGTGTAAGACCATGTC
* *
15309173 TGGGACATGGCATTGGCATTGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
65 TGGGACATGGCATTGGCATTGAG--AAGAGCCAGTGTAAAACCATGTCTAGGACATGGC
15309232 GTCGATAATT
Statistics
Matches: 113, Mismatches: 5, Indels: 8
0.90 0.04 0.06
Matches are distributed among these distances:
141 6 0.05
142 76 0.67
144 31 0.27
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (142 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATAAGAGGCAGTGTAAGACCATGTCT
GGGACATGGCATTGGCATTGAGAAGAGCCAGTGTAAAACCATGTCTAGGACATGGCATTGGCGTT
GATATGTGTGCT
Found at i:15309183 original size:96 final size:96
Alignment explanation
Indices: 15308907--15309231 Score: 399
Period size: 96 Copynumber: 3.4 Consensus size: 96
15308897 GACATTTGGG
* * * * * *
15308907 TGATATGTGTGCTAGTGTAAGACTATGTCTGGGAAATGGCAACAGCCACATTATG-GAACCAGTG
1 TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
*
15308971 TAAGACCATGTCTGGGACATGGCATCGGCCAT
66 TAAGACCATGTCTGGGACATGGCATTGG-CAT
* * * *
15309003 ATTATAAGAG-GC-AGTGTAAGACCATGTCTGGGACATGGCATTGG-C-GATTATGAGAGCCAGT
1 -TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGT
* * *
15309064 GTAAAACCATGTCTAGGACATGGCATTGGCGT
65 GTAAGACCATGTCTGGGACATGGCATTGGCAT
* * *
15309096 TGATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCTAGTG
1 TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
15309161 TAAGACCATGTCTGGGACATGGCATTGGCAT
66 TAAGACCATGTCTGGGACATGGCATTGGCAT
* ** * *
15309192 TGAGACAAGAGCTAGTGTAAGACCATGTCTAGGACATGGC
1 TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGC
15309232 GTCGATAATT
Statistics
Matches: 193, Mismatches: 30, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
92 6 0.03
93 10 0.05
94 65 0.34
95 28 0.15
96 78 0.40
97 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (96 bp):
TGATATGAGTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACATTATGAGAGCCAGTG
TAAGACCATGTCTGGGACATGGCATTGGCAT
Found at i:15311561 original size:28 final size:27
Alignment explanation
Indices: 15311519--15311616 Score: 90
Period size: 28 Copynumber: 3.5 Consensus size: 27
15311509 TAATTATATG
** *
15311519 TGGCACTTAACGTGCGAAGTATTGGGGA
1 TGGCACTTAGTGTGC-AAGTATTGAGGA
** *
15311547 TGGCACTTAGTGTGCAA-TACATCCAGAA
1 TGGCACTTAGTGTGCAAGT--ATTGAGGA
*
15311575 TGGCACTTAGTGTGCAAAGTAATGAGGA
1 TGGCACTTAGTGTGC-AAGTATTGAGGA
15311603 TGGCACTTAGTGTG
1 TGGCACTTAGTGTG
15311617 TGAAATCCAG
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
26 1 0.02
27 2 0.04
28 50 0.89
29 2 0.04
30 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.31, T:0.27
Consensus pattern (27 bp):
TGGCACTTAGTGTGCAAGTATTGAGGA
Found at i:15311645 original size:54 final size:56
Alignment explanation
Indices: 15311530--15311645 Score: 155
Period size: 56 Copynumber: 2.1 Consensus size: 56
15311520 GGCACTTAAC
* * * * *
15311530 GTGCGAAGTATTGGGGATGGCACTTAGTGTGCAATACATCCAGAATGGCACTTAGT
1 GTGCAAAGTAATGAGGATGGCACTTAGTGTGCAATACATCCAGAACGACACTTAGT
**
15311586 GTGCAAAGTAATGAGGATGGCACTTAGTGTGTGA-A-ATCCAGAACGACACTTAGT
1 GTGCAAAGTAATGAGGATGGCACTTAGTGTGCAATACATCCAGAACGACACTTAGT
15311640 GTGCAA
1 GTGCAA
15311646 GGTATCGGGT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 23 0.43
55 1 0.02
56 29 0.55
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (56 bp):
GTGCAAAGTAATGAGGATGGCACTTAGTGTGCAATACATCCAGAACGACACTTAGT
Found at i:15311782 original size:32 final size:32
Alignment explanation
Indices: 15311721--15311787 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
15311711 TGAGTATGAG
* **
15311721 ATTGGTACGATATGGTACAGGTATCTACGAAA
1 ATTGGTACAATATAATACAGGTATCTACGAAA
* *
15311753 ATTGGTACAATATAATACATGTATGTACGAAA
1 ATTGGTACAATATAATACAGGTATCTACGAAA
15311785 ATT
1 ATT
15311788 CAATTGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.31
Consensus pattern (32 bp):
ATTGGTACAATATAATACAGGTATCTACGAAA
Found at i:15316032 original size:23 final size:23
Alignment explanation
Indices: 15316005--15316050 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
15315995 GGGAGTTCGC
15316005 GAGTGCACCATTCACAAAACAGT
1 GAGTGCACCATTCACAAAACAGT
*
15316028 GAGTGCACCATTCACAAAGCAGT
1 GAGTGCACCATTCACAAAACAGT
15316051 CTGTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.17
Consensus pattern (23 bp):
GAGTGCACCATTCACAAAACAGT
Found at i:15333401 original size:28 final size:28
Alignment explanation
Indices: 15333369--15333438 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
15333359 ATAGTAAGTC
15333369 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
15333397 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
15333425 CGCACACTTAGTGC
1 CGCACACTTAGTGC
15333439 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:15344930 original size:20 final size:20
Alignment explanation
Indices: 15344902--15344940 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
15344892 TTTGTCTTTG
15344902 GATTAATAAATATGAATGTT
1 GATTAATAAATATGAATGTT
* * *
15344922 GATTTATAAGTTTGAATGT
1 GATTAATAAATATGAATGT
15344941 GGTAATTAGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (20 bp):
GATTAATAAATATGAATGTT
Found at i:15350225 original size:59 final size:59
Alignment explanation
Indices: 15350054--15350218 Score: 240
Period size: 59 Copynumber: 2.8 Consensus size: 59
15350044 CAGATCATAG
* * * *
15350054 AATCACATGCCTCTCAACAGGGATACTCAAATGCACTCAGACCCTAGCATGTATCACAT
1 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAGCATGTATCACAT
* * * * * *
15350113 ATTCATATGCCTCTCAATGGGGCTACTCAAAAACACCTAAACCCTAGCATGTATCACAT
1 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAGCATGTATCACAT
15350172 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAG
1 AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAG
15350219 TGTGTATTAC
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 90 1.00
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.21
Consensus pattern (59 bp):
AATCACATGCCTCTCAACGGGGCTACTCAAAAGCACCCAGACCCTAGCATGTATCACAT
Found at i:15353529 original size:37 final size:37
Alignment explanation
Indices: 15353479--15353606 Score: 247
Period size: 37 Copynumber: 3.5 Consensus size: 37
15353469 TTACGAAGTT
*
15353479 ATCGGGTCTTACCCGGACAAAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
15353516 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
15353553 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
15353590 ATCGGGTCTTACCCGGA
1 ATCGGGTCTTACCCGGA
15353607 ATATATTTCC
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 90 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.23
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:15353807 original size:48 final size:48
Alignment explanation
Indices: 15353753--15354145 Score: 642
Period size: 48 Copynumber: 8.1 Consensus size: 48
15353743 ACACATCGCC
* *
15353753 TACATATTTCACAATAGCCATTCGGTTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
**
15353801 TACATATTTCACATTAGCCATTCGGCTTTATAACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
15353851 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15353899 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
15353947 TACATATTTCACATTAGCCATTCCGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
15353997 TATATATTTCACATTAACCATTCGGATTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15354045 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
15354093 TACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15354141 TACAT
1 TACAT
15354146 CAATTTCAGC
Statistics
Matches: 321, Mismatches: 20, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
48 233 0.73
50 88 0.27
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:15354153 original size:98 final size:96
Alignment explanation
Indices: 15353753--15354145 Score: 642
Period size: 98 Copynumber: 4.1 Consensus size: 96
15353743 ACACATCGCC
* *
15353753 TACATATTTCACAATAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
**
15353818 CCATTCGGCTTTATAACATATACATATCTCATA
66 CCATTCGGCTTTACCACATATACATATCTC--A
* *
15353851 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
15353916 CCATTCGGCTTTACCACATATACATATCTCA
66 CCATTCGGCTTTACCACATATACATATCTCA
* *
15353947 TACATATTTCACATTAGCCATTCCGCTTTACCACATATACATATCTCATATATATATTTCACATT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATT
* *
15354012 AACCATTCGGATTTACCACATATACATATCTCA
64 AGCCATTCGGCTTTACCACATATACATATCTCA
15354045 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* *
15354110 CCATTCAGCTTTACCACATATACATATCTTA
66 CCATTCGGCTTTACCACATATACATATCTCA
15354141 TACAT
1 TACAT
15354146 CAATTTCAGC
Statistics
Matches: 275, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
96 94 0.34
98 181 0.66
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (96 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCGGCTTTACCACATATACATATCTCA
Found at i:15354153 original size:146 final size:146
Alignment explanation
Indices: 15353753--15354138 Score: 709
Period size: 146 Copynumber: 2.6 Consensus size: 146
15353743 ACACATCGCC
* *
15353753 TACATATTTCACAATAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
* ** *
15353818 CCATTCGGCTTTATAACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACC
66 CCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGATTTACC
15353883 ACATATACATATCTCA
131 ACATATACATATCTCA
15353899 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
*
15353964 CCATTCCGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGATTTACC
66 CCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGATTTACC
15354029 ACATATACATATCTCA
131 ACATATACATATCTCA
15354045 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
15354110 CCATTCAGCTTTACCACATATACATATCT
66 CCATTCAGCTTTACCACATATACATATCT
15354139 TATACATCAA
Statistics
Matches: 233, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
146 233 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (146 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAG
CCATTCAGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGATTTACC
ACATATACATATCTCA
Found at i:15357995 original size:40 final size:40
Alignment explanation
Indices: 15357608--15357994 Score: 612
Period size: 40 Copynumber: 9.7 Consensus size: 40
15357598 CCAGCATGAT
* *
15357608 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * * *
15357648 TGCTCTTCGGGACTTAACCCTGATATAACTCTAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* * * *
15357688 TGCTCTTTGAGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
15357728 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
* *
15357768 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
*
15357808 TGCTCTTCGGGACTTAGCCCGGATATAAGACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
*
15357848 TGCTCTTCGGGGCTTAGCCCGGATATAACACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
*
15357888 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
*
15357928 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
15357968 TGCTCTTCGGGACTTAGCCCGGATATA
1 TGCTCTTCGGGACTTAGCCCGGATATA
15357995 TATAACTCTC
Statistics
Matches: 322, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 322 1.00
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACTAGCACGAA
Found at i:15359308 original size:37 final size:37
Alignment explanation
Indices: 15359249--15359391 Score: 250
Period size: 37 Copynumber: 3.9 Consensus size: 37
15359239 AGCTCAGATG
* *
15359249 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
15359286 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
15359323 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
15359360 TAATCTCCACACGTAGTCATCGGGTCTTACCC
1 AAATCTCCACACGTAGTCATCGGGTCTTACCC
15359392 AGAATATATT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 103 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:15359596 original size:48 final size:48
Alignment explanation
Indices: 15359541--15359980 Score: 763
Period size: 48 Copynumber: 9.1 Consensus size: 48
15359531 ACACATCGCC
*
15359541 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
15359589 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--AT
* *
15359639 ATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
15359687 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
15359735 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
* * *
15359783 ATATATATATCACATTAACCATTCGACTTTACCACATATACATATCTCAT
1 ACATAT-T-TCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
15359833 ACATATTTCACATTAGCCATTCGGCTTTACCACAAATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
15359881 ACATATTTCACATTAGCCATTCTGCTTTACCACATATACATATCTCAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
15359929 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
15359977 ACAT
1 ACAT
15359981 CAATTTCAGC
Statistics
Matches: 372, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
48 280 0.75
49 2 0.01
50 90 0.24
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (48 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:15359708 original size:146 final size:146
Alignment explanation
Indices: 15359541--15359980 Score: 794
Period size: 146 Copynumber: 3.0 Consensus size: 146
15359531 ACACATCGCC
*
15359541 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
15359606 CATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACCA
66 CATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACCA
15359671 CATATACATATCTCAT
131 CATATACATATCTCAT
15359687 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
* *
15359752 CATTCGGCTTTACCACATATACATATCTCATATATATATATCACATTAACCATTCGACTTTACCA
66 CATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACCA
15359817 CATATACATATCTCAT
131 CATATACATATCTCAT
*
15359833 ACATATTTCACATTAGCCATTCGGCTTTACCACAAATACATATCTCATACATATTTCACATTAGC
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
* * *
15359898 CATTCTGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGCCATTCGGCTTTACCA
66 CATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACCA
*
15359961 CATATACATATCTTAT
131 CATATACATATCTCAT
15359977 ACAT
1 ACAT
15359981 CAATTTCAGC
Statistics
Matches: 284, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
144 49 0.17
146 235 0.83
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (146 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGC
CATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTACCA
CATATACATATCTCAT
Found at i:15359768 original size:194 final size:194
Alignment explanation
Indices: 15359541--15359980 Score: 767
Period size: 194 Copynumber: 2.3 Consensus size: 194
15359531 ACACATCGCC
*
15359541 ACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT-T-TCACATTA
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATATCACATTA
* * *
15359604 GCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAACCATTCGGCTTTAC
66 ACCATTCGACTTTACCACATATACATATCTC--ATACATATTTCACATTAACCATTCGGCTTTAC
*
15359669 CACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
129 CACAAATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
15359734 T
194 T
*
15359735 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATATCACATTA
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATATCACATTA
*
15359800 ACCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCA
66 ACCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCA
*
15359865 CAAATACATATCTCATACATATTTCACATTAGCCATTCTGCTTTACCACATATACATATCTCAT
131 CAAATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
*
15359929 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTTATACAT
1 ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
15359981 CAATTTCAGC
Statistics
Matches: 234, Mismatches: 10, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
194 196 0.84
195 1 0.00
196 37 0.16
ACGTcount: A:0.33, C:0.26, G:0.05, T:0.36
Consensus pattern (194 bp):
ACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATATATCACATTA
ACCATTCGACTTTACCACATATACATATCTCATACATATTTCACATTAACCATTCGGCTTTACCA
CAAATACATATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCAT
Found at i:15371703 original size:14 final size:14
Alignment explanation
Indices: 15371680--15371714 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
15371670 TTAGGTTGAG
*
15371680 AAAATAATTTAATT
1 AAAATTATTTAATT
15371694 AAAATTATTTAATT
1 AAAATTATTTAATT
15371708 AAAATTA
1 AAAATTA
15371715 ATAACATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
AAAATTATTTAATT
Found at i:15373636 original size:31 final size:31
Alignment explanation
Indices: 15373598--15373660 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
15373588 GCCAACACTT
15373598 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
1 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
15373629 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
1 AGGCTATTTTCCAAGCCTTATATTGTCCTTA
15373660 A
1 A
15373661 TTCTTTCCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.41
Consensus pattern (31 bp):
AGGCTATTTTCCAAGCCTTATATTGTCCTTA
Found at i:15376208 original size:24 final size:24
Alignment explanation
Indices: 15376176--15376223 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
15376166 ATTTCAAGCC
15376176 AAGCTGAATCATTTTTATAACTAT
1 AAGCTGAATCATTTTTATAACTAT
15376200 AAGCTGAATCATTTTTATAACTAT
1 AAGCTGAATCATTTTTATAACTAT
15376224 GGCAGCCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (24 bp):
AAGCTGAATCATTTTTATAACTAT
Found at i:15377427 original size:4 final size:4
Alignment explanation
Indices: 15377411--15377456 Score: 65
Period size: 4 Copynumber: 11.0 Consensus size: 4
15377401 TGGTTTACCG
*
15377411 ATTT ATTT CATTT ATTT ATTT ATTT ATTT TTGTT ATTT ATTT ATTT
1 ATTT ATTT -ATTT ATTT ATTT ATTT ATTT AT-TT ATTT ATTT ATTT
15377457 TTATTCCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
4 31 0.82
5 7 0.18
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:15377435 original size:21 final size:21
Alignment explanation
Indices: 15377411--15377456 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
15377401 TGGTTTACCG
15377411 ATTTATTTCAT-TTATTTATTT
1 ATTTATTT-ATGTTATTTATTT
*
15377432 ATTTATTTTTGTTATTTATTT
1 ATTTATTTATGTTATTTATTT
15377453 ATTT
1 ATTT
15377457 TTATTCCTCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (21 bp):
ATTTATTTATGTTATTTATTT
Found at i:15377457 original size:17 final size:16
Alignment explanation
Indices: 15377411--15377458 Score: 69
Period size: 17 Copynumber: 2.9 Consensus size: 16
15377401 TGGTTTACCG
*
15377411 ATTTATTTCATTTATTT
1 ATTTATTT-ATTTTTTT
15377428 ATTTATTTATTTTTGTT
1 ATTTATTTATTTTT-TT
15377445 ATTTATTTATTTTT
1 ATTTATTTATTTTT
15377459 ATTCCTCTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
16 5 0.17
17 24 0.83
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (16 bp):
ATTTATTTATTTTTTT
Found at i:15377867 original size:10 final size:10
Alignment explanation
Indices: 15377809--15377869 Score: 52
Period size: 10 Copynumber: 5.9 Consensus size: 10
15377799 TTTTTGAAAT
15377809 TTATTAAAAA
1 TTATTAAAAA
*
15377819 TTTTATAAAAA
1 TTAT-TAAAAA
* *
15377830 ATATAAAAAA
1 TTATTAAAAA
*
15377840 TTA-TACATAA
1 TTATTA-AAAA
15377850 TTATTTAAAAA
1 TTA-TTAAAAA
15377861 TTATTAAAA
1 TTATTAAAA
15377870 TGATAATAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
9 1 0.03
10 22 0.56
11 14 0.36
12 2 0.05
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (10 bp):
TTATTAAAAA
Found at i:15386908 original size:17 final size:17
Alignment explanation
Indices: 15386876--15386909 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
15386866 TGAATGGCGG
15386876 ACACATAAACCAAGAAC
1 ACACATAAACCAAGAAC
15386893 ACACGATAAACC-AGAAC
1 ACAC-ATAAACCAAGAAC
15386910 TACGCCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.56, C:0.29, G:0.09, T:0.06
Consensus pattern (17 bp):
ACACATAAACCAAGAAC
Found at i:15394916 original size:12 final size:12
Alignment explanation
Indices: 15394899--15394923 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15394889 ATGACATTTT
15394899 GGTGTATTCTAA
1 GGTGTATTCTAA
15394911 GGTGTATTCTAA
1 GGTGTATTCTAA
15394923 G
1 G
15394924 TCTGAGGACG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.28, T:0.40
Consensus pattern (12 bp):
GGTGTATTCTAA
Found at i:15402099 original size:14 final size:15
Alignment explanation
Indices: 15402062--15402109 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
15402052 ATGATTAGTC
15402062 TATAATTATAATAAA
1 TATAATTATAATAAA
*
15402077 TATGA-TATAATAAA
1 TATAATTATAATAAA
*
15402091 TA-AATTATAGTAAAA
1 TATAATTATAAT-AAA
15402106 TATA
1 TATA
15402110 CCTGAGATTC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 1 0.04
14 16 0.59
15 9 0.33
16 1 0.04
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (15 bp):
TATAATTATAATAAA
Done.