Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 50 of 259
Found at i:15711987 original size:84 final size:85
Alignment explanation
Indices: 15711793--15712169 Score: 382
Period size: 84 Copynumber: 4.4 Consensus size: 85
15711783 TATGCTTCAG
* * * * *
15711793 TTTATCCAATGATGCACTGTGTGTGCTAGTATAGTTACTTCGATTTATTCGATGATGCGCTTTGT
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCAC-TTGT
* * ***
15711858 GTGCCAGTATAGTTGCTTTTC
65 GTGCCAGTATAATTACTTCGA
* * * * * * * *
15711879 TTTCTTCGATGATGCATTATGTGTGTCAGTATAGTTACTTGGGTTTATCCAATGAAGCAC-TGTG
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCACTTGTG
* * * *
15711943 TGTCAGTATAGTTATTTTGA
66 TGCCAGTATAATTACTTCGA
** * * * **
15711963 TTTATTTGTTGATGCACTGTGTGTGCCAGCATAGTTACTTCAAATTT-TCTGATGATGCAC-TGT
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTC-GATTTATCCAATGATGCACTTGT
15712026 GTGCCAGTATAATTACTTCGA
65 GTGCCAGTATAATTACTTCGA
* * * * * *
15712047 TTTATCCGTTGATGCATTGTGTGTGCCAGTATAGTTACTTCGGTTTCTCCAATGGTGCATCGTGT
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCA-CTTGT
15712112 GTGCCAGTATAATTACTTCGA
65 GTGCCAGTATAATTACTTCGA
*
15712133 TTTATCTGATGATGCACTGTGTGTGCCAGTATAGTTA
1 TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTA
15712170 TGGTTTCTCT
Statistics
Matches: 240, Mismatches: 47, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
83 3 0.01
84 128 0.53
85 4 0.02
86 105 0.44
ACGTcount: A:0.21, C:0.16, G:0.22, T:0.41
Consensus pattern (85 bp):
TTTATCCGATGATGCACTGTGTGTGCCAGTATAGTTACTTCGATTTATCCAATGATGCACTTGTG
TGCCAGTATAATTACTTCGA
Found at i:15712020 original size:127 final size:126
Alignment explanation
Indices: 15711787--15712240 Score: 422
Period size: 127 Copynumber: 3.6 Consensus size: 126
15711777 ACTGGTTATG
* *
15711787 CTTCAGTTTATCCAATGATGCACTGTGTGTGCTAGTATAGTTACTTCGATTTATTCGATGATGCG
1 CTTCGGTTTATCCAATGATGCACTGTGTGTGC-AGTATAGTTACTTCGATTTATTCGATGATGCA
* * * *
15711852 CTTTGTGTGCCAGTATAGTTGCTT--TTCTTTCTTCGATGATGCATTATGTGTGTCAGTATAGTT
65 CTGTGTGTGCCAGTATAGTTACTTCAAT-TTTC-T-GATGATGCA-TATGTGTGCCAGTATAGTT
15711915 A
126 A
* * * * * *
15711916 CTTGGGTTTATCCAATGAAGCACTGTGTGT-CAGTATAGTTATTTTGATTTATTTGTTGATGCAC
1 CTTCGGTTTATCCAATGATGCACTGTGTGTGCAGTATAGTTACTTCGATTTATTCGATGATGCAC
* * *
15711980 TGTGTGTGCCAGCATAGTTACTTCAAATTTTCTGATGATGCA-CTGTGTGCCAGTATAATTA
66 TGTGTGTGCCAGTATAGTTACTTC-AATTTTCTGATGATGCATATGTGTGCCAGTATAGTTA
* ** * * * * * *
15712041 CTTCGATTTATCCGTTGATGCATTGTGTGTGCCAGTATAGTTACTTCGGTTTCTCCAATGGTGCA
1 CTTCGGTTTATCCAATGATGCACTGTGTGTG-CAGTATAGTTACTTCGATTTATTCGATGATGCA
* * *
15712106 -TCGTGTGTGCCAGTATAATTACTTCGATTTATCTGATGATGCACTGTGTGTGCCAGTATAGTTA
65 CT-GTGTGTGCCAGTATAGTTACTTCAATTT-TCTGATGATGCA-TATGTGTGCCAGTATAGTTA
* ** * * *
15712170 --T-GGTTTCTCTGATGATGCACTGTGTGTGTCAATATAGTTGCTTCGATATA-TCGAATGATGC
1 CTTCGGTTTATCCAATGATGCACTGTGTGTG-CAGTATAGTTACTTCGATTTATTCG-ATGATGC
* *
15712231 GCTGCGTGTG
64 ACTGTGTGTG
15712241 TTCTAAAAAT
Statistics
Matches: 263, Mismatches: 51, Indels: 25
0.78 0.15 0.07
Matches are distributed among these distances:
125 41 0.16
126 55 0.21
127 116 0.44
128 2 0.01
129 48 0.18
130 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.23, T:0.41
Consensus pattern (126 bp):
CTTCGGTTTATCCAATGATGCACTGTGTGTGCAGTATAGTTACTTCGATTTATTCGATGATGCAC
TGTGTGTGCCAGTATAGTTACTTCAATTTTCTGATGATGCATATGTGTGCCAGTATAGTTA
Found at i:15712228 original size:83 final size:84
Alignment explanation
Indices: 15711801--15712240 Score: 358
Period size: 84 Copynumber: 5.2 Consensus size: 84
15711791 AGTTTATCCA
* * * * *
15711801 ATGATGCACTGTGTGTGCTAGTATAGTTACTTCGATTTAT-TCGATGATGCGCTTTGTGTGCCAG
1 ATGATGCACTGTGTGTGCCAGTATAGTTAC-TCGGTTTCTCT-GATGATGCACTGTGTGTGCCAG
* * *** *
15711865 TATAGTTGCTTTTCTTTCTTCG
64 TATAATTACTTCGATTT-ATCG
* * * * * ** *
15711887 ATGATGCATTATGTGTGTCAGTATAGTTACTTGGGTTTATCCAATGAAGCACTGTGTGT--CAGT
1 ATGATGCACTGTGTGTGCCAGTATAGTTAC-TCGGTTTCTCTGATGATGCACTGTGTGTGCCAGT
* * * *
15711950 ATAGTTATTTTGATTTATTTG
65 ATAATTACTTCGATTTA-TCG
* * **
15711971 TTGATGCACTGTGTGTGCCAGCATAGTTACTTCAAATTT-TCTGATGATGCAC--TGTGTGCCAG
1 ATGATGCACTGTGTGTGCCAGTATAGTTAC-TC-GGTTTCTCTGATGATGCACTGTGTGTGCCAG
15712033 TATAATTACTTCGATTTATCCG
64 TATAATTACTTCGATTTAT-CG
* * ** *
15712055 TTGATGCATTGTGTGTGCCAGTATAGTTACTTCGGTTTCTCCAATGGTGCA-TCGTGTGTGCCAG
1 ATGATGCACTGTGTGTGCCAGTATAGTTAC-TCGGTTTCTCTGATGATGCACT-GTGTGTGCCAG
15712119 TATAATTACTTCGATTTATCTG
64 TATAATTACTTCGATTTATC-G
* *
15712141 ATGATGCACTGTGTGTGCCAGTATAGTTA-T-GGTTTCTCTGATGATGCACTGTGTGTGTCAATA
1 ATGATGCACTGTGTGTGCCAGTATAGTTACTCGGTTTCTCTGATGATGCACTGTGTGTGCCAGTA
* * *
15712204 TAGTTGCTTCGATATATCG
66 TAATTACTTCGATTTATCG
* *
15712223 AATGATGCGCTGCGTGTG
1 -ATGATGCACTGTGTGTG
15712241 TTCTAAAAAT
Statistics
Matches: 290, Mismatches: 51, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
82 6 0.02
83 60 0.21
84 116 0.40
85 4 0.01
86 104 0.36
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (84 bp):
ATGATGCACTGTGTGTGCCAGTATAGTTACTCGGTTTCTCTGATGATGCACTGTGTGTGCCAGTA
TAATTACTTCGATTTATCG
Found at i:15717122 original size:26 final size:26
Alignment explanation
Indices: 15717073--15717299 Score: 231
Period size: 26 Copynumber: 8.7 Consensus size: 26
15717063 ACGGAGTTTT
* *
15717073 CCACAAAGGCATTCCTTTCATATTCCA
1 CCACAAAGG-ATTTCTTTCATATTACA
*
15717100 CCACAAAGGATTTCTTTCCTATTACA
1 CCACAAAGGATTTCTTTCATATTACA
* * * *
15717126 CAACAAAGGCTTTCTTTCATAATACG
1 CCACAAAGGATTTCTTTCATATTACA
* *
15717152 CCATAAAGGCTTTCTTTCATATTACA
1 CCACAAAGGATTTCTTTCATATTACA
* *
15717178 CCTCAAAGGTTTTCTTTCATATTACA
1 CCACAAAGGATTTCTTTCATATTACA
* * *
15717204 CCACAAACGCTTTCTTTCATATTATA
1 CCACAAAGGATTTCTTTCATATTACA
* *
15717230 CCACAAA-GACTTTCTTTTATTTTACA
1 CCACAAAGGA-TTTCTTTCATATTACA
* * **
15717256 CCATAAAGAATTTCTTTCATATTATG
1 CCACAAAGGATTTCTTTCATATTACA
* *
15717282 CCACAAAGGTTTTGTTTC
1 CCACAAAGGATTTCTTTC
15717300 TTGACTTGTT
Statistics
Matches: 165, Mismatches: 33, Indels: 5
0.81 0.16 0.02
Matches are distributed among these distances:
25 1 0.01
26 154 0.93
27 10 0.06
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.37
Consensus pattern (26 bp):
CCACAAAGGATTTCTTTCATATTACA
Found at i:15719130 original size:46 final size:46
Alignment explanation
Indices: 15719079--15719237 Score: 121
Period size: 46 Copynumber: 3.4 Consensus size: 46
15719069 GTCGATGCAA
*
15719079 GTCCCAGACATGTCTTACACAGGCT-TACATCTCGAGGCCG-GCACAT
1 GTCCCAGACATGTCTTACACAGGCTGT-CATCTCAAGGCCGAGC-CAT
* * *
15719125 GTCCCAAACATGTCATACACTA-GCTGTCATCTCAATGCCGATGCCAT
1 GTCCCAGACATGTCTTACAC-AGGCTGTCATCTCAAGGCCGA-GCCAT
* * * * **
15719172 GTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATG-CAT
1 GTCCCAGACAT-GTCTTACACAGGCTGTCAT-CTCAAGGCCGA-GCCAT
*
15719219 GTGCCAGACATGTCTTACA
1 GTCCCAGACATGTCTTACA
15719238 GTAGCACACA
Statistics
Matches: 91, Mismatches: 15, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
46 40 0.44
47 26 0.29
48 24 0.26
49 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
GTCCCAGACATGTCTTACACAGGCTGTCATCTCAAGGCCGAGCCAT
Found at i:15722051 original size:18 final size:18
Alignment explanation
Indices: 15722028--15722062 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15722018 TCCCTGGGTG
*
15722028 ATAGTCTATTATTAACTT
1 ATAGTCTATTATCAACTT
*
15722046 ATAGTCTTTTATCAACT
1 ATAGTCTATTATCAACT
15722063 CCAAACATCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (18 bp):
ATAGTCTATTATCAACTT
Found at i:15725977 original size:47 final size:47
Alignment explanation
Indices: 15725908--15726165 Score: 233
Period size: 47 Copynumber: 5.5 Consensus size: 47
15725898 TACCGATGCT
* * **
15725908 ATGTCCCAGACACGGTATTACACTGACTTACATCTCAAGTTGAAGCC
1 ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCC
* * *
15725955 ATGTCCTAGACATGGTCTTACACTGACTTACGTCTCAAGTCGAAGCC
1 ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCC
* * * * *
15726002 ATGTCCTAAACATGGTCTTATACTGAC-TATCATCTCGTAGCCGACG-C
1 ATGTCCCAGACATGGTCTTACACTGACTTA-CATCTC-AAGCCGAAGCC
* * * * * *
15726049 ATGTCCCAGACAT-TTCTTACACTGGCTTACGTCTCGAGGCGGATG-C
1 ATGTCCCAGACATGGTCTTACACTGACTTACATCTC-AAGCCGAAGCC
* *
15726095 ATGTCCCAGACAT-GTCTTACACTAGCAC-T-CATCTCAATGCTGATGCC
1 ATGTCCCAGACATGGTCTTACACT-G-ACTTACATCTCAA-GCCGAAGCC
15726142 ATGTCCCAGACATGGTCTTACACT
1 ATGTCCCAGACATGGTCTTACACT
15726166 AGCTCTCACA
Statistics
Matches: 177, Mismatches: 26, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
45 1 0.01
46 57 0.32
47 102 0.58
48 17 0.10
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCC
Found at i:15726108 original size:93 final size:93
Alignment explanation
Indices: 15725901--15726165 Score: 263
Period size: 94 Copynumber: 2.8 Consensus size: 93
15725891 GGTAAGGTAC
* * ** *
15725901 CGATGCTATGTCCCAGACACGGTATTACACTGACTTACATCTCAAGTTGAAGCCATGTCCTAGAC
1 CGATGC-ATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCCATGTCCCAGAC
*
15725966 ATGGTCTTACACTGACTTACGTCTCAAGT
65 ATGGTCTTACACTGACTTACGTCTCAAGG
* * * * * *
15725995 CGAAGCCATGTCCTAAACATGGTCTTATACTGAC-TATCATCTCGTAGCCGACG-CATGTCCCAG
1 CGATG-CATGTCCCAGACATGGTCTTACACTGACTTA-CATCTC-AAGCCGAAGCCATGTCCCAG
* * *
15726058 ACAT-TTCTTACACTGGCTTACGTCTCGAGG
63 ACATGGTCTTACACTGACTTACGTCTCAAGG
* *
15726088 CGGATGCATGTCCCAGACAT-GTCTTACACTAGCAC-T-CATCTCAATGCTGATGCCATGTCCCA
1 C-GATGCATGTCCCAGACATGGTCTTACACT-G-ACTTACATCTCAA-GCCGAAGCCATGTCCCA
15726150 GACATGGTCTTACACT
62 GACATGGTCTTACACT
15726166 AGCTCTCACA
Statistics
Matches: 139, Mismatches: 23, Indels: 18
0.77 0.13 0.10
Matches are distributed among these distances:
91 1 0.01
92 20 0.14
93 52 0.37
94 60 0.43
95 6 0.04
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (93 bp):
CGATGCATGTCCCAGACATGGTCTTACACTGACTTACATCTCAAGCCGAAGCCATGTCCCAGACA
TGGTCTTACACTGACTTACGTCTCAAGG
Found at i:15732013 original size:50 final size:47
Alignment explanation
Indices: 15731882--15732104 Score: 158
Period size: 47 Copynumber: 4.7 Consensus size: 47
15731872 ATAGGGTATA
* * *
15731882 GTGTCGATGCCATGTCCCAGACATGGTCTTGCATTGGCTCATCCATC
1 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATC
** * *
15731929 AAGTCGATGCCATGTCCCAGACATGGT-TTCACACTGACTCTTACATATCC
1 GTGTCGATGCCATGTCCCAGACATGGTCTT-ACACTGACTCAT-C-CAT-C
* * * * *
15731979 GTGTCGATGCCATGTCCCAAACATGGTCTTACACTTACACAT--TTT
1 GTGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATC
* *
15732024 GTAGCCTATG-CATGTCCCAGACAT-GTCTTACACATG-CTTACAT-C-TC
1 GT-GTCGATGCCATGTCCCAGACATGGTCTTACAC-TGAC-T-CATCCATC
* *
15732070 GAGGCCGATGCCATGTCCCAGACAT-GTCTTACACT
1 G-TGTCGATGCCATGTCCCAGACATGGTCTTACACT
15732105 AGCACACAAA
Statistics
Matches: 141, Mismatches: 23, Indels: 25
0.75 0.12 0.13
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 20 0.14
47 56 0.40
48 1 0.01
49 2 0.01
50 34 0.24
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
GTGTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCATCCATC
Found at i:15734441 original size:46 final size:46
Alignment explanation
Indices: 15734343--15734562 Score: 153
Period size: 46 Copynumber: 4.7 Consensus size: 46
15734333 TGTGAGAGCT
* * * * *
15734343 AGTGAAAGACCATGTCTGGGACATGGCATAGGCATTGAGATG--AGTCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGTAAG-CC
* *
15734390 TAGTGTAAGACGTGTTTGGGACATGCATCGACCTCGAGATGTAAGCC
1 -AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
* * * *
15734437 AGTGTAAGACATGTCTGGGACATGCGTTG-GCTACGAGATG-ATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCT-CGAGATGTA-AGCC
* * * *
15734483 AGTGTAAGACCATGTCTGGGACATGGCTTCGA-CTTGAGATATAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGAGATGTAAGCC
* * *
15734530 AGTGTAAGACTGTGTCTGAGACACGACATCGAC
1 AGTGTAAGAC-ATGTCTGGGACATG-CATCGAC
15734563 ATCGTACCCC
Statistics
Matches: 138, Mismatches: 23, Indels: 22
0.75 0.13 0.12
Matches are distributed among these distances:
45 3 0.02
46 59 0.43
47 59 0.43
48 17 0.12
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCC
Found at i:15734522 original size:47 final size:47
Alignment explanation
Indices: 15734341--15734562 Score: 163
Period size: 47 Copynumber: 4.7 Consensus size: 47
15734331 TTTGTGAGAG
* * * *
15734341 CTAGTGAAAGACCATGTCTGGGACATGGCATAGGCATTGAGATG--AGT
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGAC-TCGAGATGTAAGT
* *
15734388 CCTAGTGTAAGA-CGTGTTTGGGACATGCATCGACCTCGAGATGTAAG-
1 -CTAGTGTAAGACCATGTCTGGGACATGCATCGA-CTCGAGATGTAAGT
* * * *
15734435 CCAGTGTAAGA-CATGTCTGGGACATGCGTTGGCTACGAGATG-ATAGT
1 CTAGTGTAAGACCATGTCTGGGACATGCATCGACT-CGAGATGTA-AGT
* * *
15734482 C-AGTGTAAGACCATGTCTGGGACATGGCTTCGACTTGAGATATAAG-
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCGACTCGAGATGTAAGT
** * *
15734528 CTAGTGTAAGACTGTGTCTGAGACACGACATCGAC
1 CTAGTGTAAGACCATGTCTGGGACATG-CATCGAC
15734563 ATCGTACCCC
Statistics
Matches: 141, Mismatches: 22, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
45 3 0.02
46 58 0.41
47 61 0.43
48 19 0.13
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (47 bp):
CTAGTGTAAGACCATGTCTGGGACATGCATCGACTCGAGATGTAAGT
Found at i:15736791 original size:6 final size:6
Alignment explanation
Indices: 15736780--15736804 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15736770 TTACTACTAT
15736780 AAATTG AAATTG AAATTG AAATTG A
1 AAATTG AAATTG AAATTG AAATTG A
15736805 CTATTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (6 bp):
AAATTG
Found at i:15740034 original size:7 final size:7
Alignment explanation
Indices: 15740022--15740060 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
15740012 GATTATTCGA
15740022 TCCATCT
1 TCCATCT
15740029 TCCATCT
1 TCCATCT
15740036 TCCATCT
1 TCCATCT
15740043 TCCATCT
1 TCCATCT
15740050 TCCATCT
1 TCCATCT
15740057 TCCA
1 TCCA
15740061 CCTTTTAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.15, C:0.44, G:0.00, T:0.41
Consensus pattern (7 bp):
TCCATCT
Found at i:15740121 original size:22 final size:23
Alignment explanation
Indices: 15740078--15740123 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
15740068 ATTTTAATTT
*
15740078 TCTTTATTTATTTTTGTTTTGAA
1 TCTTTATTTATTTTTGTCTTGAA
15740101 TCTTTATTT-TTTTAT-TCTTGAA
1 TCTTTATTTATTTT-TGTCTTGAA
15740123 T
1 T
15740124 TTCTTCTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 11 0.52
23 10 0.48
ACGTcount: A:0.17, C:0.07, G:0.07, T:0.70
Consensus pattern (23 bp):
TCTTTATTTATTTTTGTCTTGAA
Found at i:15744694 original size:34 final size:34
Alignment explanation
Indices: 15744647--15744711 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
15744637 TCACACTAGG
*
15744647 GTCTATTTTCCCTTTAAAGACCTTCAGTTTTAGC
1 GTCTATTTGCCCTTTAAAGACCTTCAGTTTTAGC
15744681 GTCTATTTGCCCTTTAAAGACCTTCAGTTTT
1 GTCTATTTGCCCTTTAAAGACCTTCAGTTTT
15744712 TATTCTCTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.20, C:0.23, G:0.12, T:0.45
Consensus pattern (34 bp):
GTCTATTTGCCCTTTAAAGACCTTCAGTTTTAGC
Found at i:15756019 original size:32 final size:32
Alignment explanation
Indices: 15755983--15756052 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
15755973 AATAGGGTCC
15755983 TTAAAAGAAACAAAT-TACATACATAAATAAAT
1 TTAAAAGAAA-AAATATACATACATAAATAAAT
* * *
15756015 TTAAAAGAAAATATATATATACGTAAATAAAT
1 TTAAAAGAAAAAATATACATACATAAATAAAT
*
15756047 CTAAAA
1 TTAAAA
15756053 AATATTTACA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 3 0.09
32 30 0.91
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.27
Consensus pattern (32 bp):
TTAAAAGAAAAAATATACATACATAAATAAAT
Found at i:15758990 original size:39 final size:40
Alignment explanation
Indices: 15758895--15759156 Score: 328
Period size: 39 Copynumber: 6.7 Consensus size: 40
15758885 TTGAATGATG
*
15758895 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
15758933 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
15758974 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
15759013 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
15759052 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
15759091 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
15759130 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
15759157 AACGAGGAGC
Statistics
Matches: 201, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
39 130 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:15767005 original size:40 final size:40
Alignment explanation
Indices: 15766909--15767133 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
15766899 TTGAATGCTG
* *
15766909 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
*
15766948 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15766988 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
15767028 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
15767068 TCAGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
15767109 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
15767134 AACGAGGAGC
Statistics
Matches: 170, Mismatches: 10, Indels: 11
0.89 0.05 0.06
Matches are distributed among these distances:
39 19 0.11
40 141 0.83
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:15795689 original size:20 final size:21
Alignment explanation
Indices: 15795649--15795689 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
15795639 ACTTATATAA
* *
15795649 CTATCATCAAGCATTCAAAAT
1 CTATCATCAAACATCCAAAAT
15795670 CTATCATCAAACA-CCAAAAT
1 CTATCATCAAACATCCAAAAT
15795690 AATCATGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.46, C:0.27, G:0.02, T:0.24
Consensus pattern (21 bp):
CTATCATCAAACATCCAAAAT
Found at i:15796633 original size:39 final size:39
Alignment explanation
Indices: 15796593--15796807 Score: 335
Period size: 39 Copynumber: 5.5 Consensus size: 39
15796583 GTTCACTTTT
* *
15796593 AAGCATATATCACATTACAT-ATATAATCACATAACATTT
1 AAGCATATATCACAATAC-TCATATAATCACATAACATTC
*
15796632 AAGCATATATCACAATACTCATATAATCATATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
15796671 -AGCATATATCACAATACTCATATAATCTCATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* **
15796709 AAACATATATCACAATACTCATATAATTGCATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
*
15796748 AAGCATATATCATAATACTCATATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
15796787 AAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCA
15796808 AAAACATGTT
Statistics
Matches: 161, Mismatches: 13, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
38 37 0.23
39 124 0.77
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:15796643 original size:22 final size:22
Alignment explanation
Indices: 15796590--15796645 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 22
15796580 CATGTTCACT
*
15796590 TTTAAGCATATATCACATTACA
1 TTTAAGCATATATCACATAACA
*
15796612 --T-A-TATA-ATCACATAACA
1 TTTAAGCATATATCACATAACA
15796629 TTTAAGCATATATCACA
1 TTTAAGCATATATCACA
15796646 ATACTCATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 10
0.67 0.08 0.26
Matches are distributed among these distances:
17 10 0.38
18 3 0.12
19 2 0.08
20 2 0.08
21 3 0.12
22 6 0.23
ACGTcount: A:0.45, C:0.18, G:0.04, T:0.34
Consensus pattern (22 bp):
TTTAAGCATATATCACATAACA
Found at i:15796683 original size:77 final size:78
Alignment explanation
Indices: 15796593--15796807 Score: 335
Period size: 77 Copynumber: 2.8 Consensus size: 78
15796583 GTTCACTTTT
* *
15796593 AAGCATATATCACATTACAT-ATATAATCACATAACATTTAAGCATATATCACAATACTCATATA
1 AAGCATATATCACAATAC-TCATATAATCACATAACATTCAAGCATATATCACAATACTCATATA
*
15796657 ATCATATAACATTC
65 ATCACATAACATTC
* *
15796671 -AGCATATATCACAATACTCATATAATCTCATAACATTCAAACATATATCACAATACTCATATAA
1 AAGCATATATCACAATACTCATATAATCACATAACATTCAAGCATATATCACAATACTCATATAA
**
15796735 TTGCATAACATTC
66 TCACATAACATTC
*
15796748 AAGCATATATCATAATACTCATATAATCACATAACATTCAAGCATATATCACAATACTCA
1 AAGCATATATCACAATACTCATATAATCACATAACATTCAAGCATATATCACAATACTCA
15796808 AAAACATGTT
Statistics
Matches: 125, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
76 1 0.01
77 68 0.54
78 56 0.45
ACGTcount: A:0.46, C:0.21, G:0.03, T:0.31
Consensus pattern (78 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTCAAGCATATATCACAATACTCATATAA
TCACATAACATTC
Found at i:15796743 original size:116 final size:117
Alignment explanation
Indices: 15796596--15796807 Score: 347
Period size: 116 Copynumber: 1.8 Consensus size: 117
15796586 CACTTTTAAG
* *
15796596 CATATATCACATTACATATATAATCACATAACATTTAAGCATATATCACAATACTCATATAATCA
1 CATATATCACAATACATATATAATCACATAACATTCAAGCATATATCACAATACTCATATAATCA
*
15796661 TATAACATTC-AGCATATATCACAATACTCATATAATCTCATAACATTCAAA
66 CATAACATTCAAGCATATATCACAATACTCATATAATCTCATAACATTCAAA
** *
15796712 CATATATCACAATAC-TCATATAATTGCATAACATTCAAGCATATATCATAATACTCATATAATC
1 CATATATCACAATACAT-ATATAATCACATAACATTCAAGCATATATCACAATACTCATATAATC
15796776 ACATAACATTCAAGCATATATCACAATACTCA
65 ACATAACATTCAAGCATATATCACAATACTCA
15796808 AAAACATGTT
Statistics
Matches: 88, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
115 1 0.01
116 67 0.76
117 20 0.23
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.31
Consensus pattern (117 bp):
CATATATCACAATACATATATAATCACATAACATTCAAGCATATATCACAATACTCATATAATCA
CATAACATTCAAGCATATATCACAATACTCATATAATCTCATAACATTCAAA
Found at i:15799179 original size:27 final size:27
Alignment explanation
Indices: 15799131--15799289 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
15799121 GCGAGGCTGC
* *
15799131 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
*
15799158 TAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
15799184 CAGATATATGTGGCAGAGCCACCATAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
15799211 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
15799238 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
15799265 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
15799290 GACGCTTCCT
Statistics
Matches: 113, Mismatches: 11, Indels: 16
0.81 0.08 0.11
Matches are distributed among these distances:
26 9 0.08
27 99 0.88
28 5 0.04
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:15799231 original size:54 final size:54
Alignment explanation
Indices: 15799149--15799289 Score: 221
Period size: 54 Copynumber: 2.6 Consensus size: 54
15799139 GTGACGAAGT
* * *
15799149 CACCAGATATAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
15799203 CACCATATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
15799257 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATCGTGGCATAGCCACCAG
15799290 GACGCTTCCT
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 4 0.05
54 76 0.95
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATCGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:15799457 original size:28 final size:26
Alignment explanation
Indices: 15799395--15799457 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
15799385 AAAGTAACCC
** * *
15799395 TAGGGGTATAATGGTAATTTTGCACC
1 TAGGGGTATAACAGTAATTTTCCACA
15799421 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTTCC--ACA
15799449 TAGGGGTAT
1 TAGGGGTAT
15799458 TTAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 20 0.65
28 11 0.35
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTCCACA
Found at i:15800923 original size:26 final size:26
Alignment explanation
Indices: 15800893--15800974 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
15800883 TGAAACTCCC
15800893 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
15800919 ATCATGAAACATTTACGTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
15800945 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
15800971 ATCA
1 ATCA
15800975 ATTTGTATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.37, C:0.26, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:15804430 original size:51 final size:51
Alignment explanation
Indices: 15804354--15804458 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 51
15804344 ATTACATTTA
*
15804354 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* *
15804405 TCACTTATCACTGATCAGATAAGTGTAGCTGAGGCTACCACTTATCACTTG
1 TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
15804456 TCA
1 TCA
15804459 TTGATCAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.24, G:0.16, T:0.31
Consensus pattern (51 bp):
TCACTTATCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:15817672 original size:43 final size:41
Alignment explanation
Indices: 15817613--15817769 Score: 181
Period size: 43 Copynumber: 3.7 Consensus size: 41
15817603 ATATCGTACA
*
15817613 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATGTCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATG-AATCACAT-TCG
* * * *
15817656 ATGCCACTGTCTCAGACAG-GGTCATACACGAATCACAATTACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACATGAATCAC-ATT-CG
* *
15817699 ATGCCAATGTCCCAGACATGGTCTTACTTGAAATCACATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACATG-AATCACAT-TCG
15817742 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
15817770 CGAGAACACA
Statistics
Matches: 95, Mismatches: 13, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
42 7 0.07
43 80 0.84
44 8 0.08
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACGTGGTCTTACATGAATCACATTCG
Found at i:15817758 original size:86 final size:86
Alignment explanation
Indices: 15817613--15817772 Score: 232
Period size: 86 Copynumber: 1.9 Consensus size: 86
15817603 ATATCGTACA
* * * * *
15817613 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATGTCGATGCCACTGTCTCAGACAG-GG
1 ATGCCAACGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGTCCCAGAC-GTGG
15817677 TCATACACGAATCACAATTACG
65 TCATACACGAATCACAATTACG
* *
15817699 ATGCCAATGTCCCAGACATGGTCTTACTTGAAATCACATATCGATGCCAATGTCCCAGACGTGGT
1 ATGCCAACGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGTCCCAGACGTGGT
*
15817764 CTTACACGA
66 CATACACGA
15817773 GAACACATAT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
85 1 0.02
86 64 0.98
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (86 bp):
ATGCCAACGTCCCAGACATGGTCTTACATGAAATCACATATCGATGCCAATGTCCCAGACGTGGT
CATACACGAATCACAATTACG
Found at i:15823209 original size:16 final size:15
Alignment explanation
Indices: 15823184--15823219 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
15823174 AACATCTCAT
*
15823184 AAAAATAAAGAATAC
1 AAAAATAAAGAAAAC
15823199 AAAACATAAAGAAAAC
1 AAAA-ATAAAGAAAAC
15823215 AAAAA
1 AAAAA
15823220 AACTCCTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.78, C:0.08, G:0.06, T:0.08
Consensus pattern (15 bp):
AAAAATAAAGAAAAC
Found at i:15845310 original size:26 final size:26
Alignment explanation
Indices: 15845281--15845340 Score: 93
Period size: 26 Copynumber: 2.3 Consensus size: 26
15845271 CCCTCAGCTT
* *
15845281 AATTTTGACGATTTTACCCTTGGTAA
1 AATTTTGACGATTTTACCCCTAGTAA
*
15845307 AATTTTGACGATTTTGCCCCTAGTAA
1 AATTTTGACGATTTTACCCCTAGTAA
15845333 AATTTTGA
1 AATTTTGA
15845341 GAAAATATGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (26 bp):
AATTTTGACGATTTTACCCCTAGTAA
Found at i:15845503 original size:12 final size:12
Alignment explanation
Indices: 15845486--15845526 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
15845476 CAAATGGATT
*
15845486 ATTTTCATTTTC
1 ATTTTCATTTCC
15845498 ATTTTCATTTCC
1 ATTTTCATTTCC
* *
15845510 ATTTCCATATCC
1 ATTTTCATTTCC
15845522 ATTTT
1 ATTTT
15845527 TGGAAACCTG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.20, C:0.22, G:0.00, T:0.59
Consensus pattern (12 bp):
ATTTTCATTTCC
Found at i:15850407 original size:6 final size:6
Alignment explanation
Indices: 15850396--15850426 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
15850386 AAAGGGCACA
15850396 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT T
15850427 TAATTTTGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:15861782 original size:5 final size:5
Alignment explanation
Indices: 15861766--15861804 Score: 55
Period size: 5 Copynumber: 8.0 Consensus size: 5
15861756 CCAAAAGGAA
15861766 AAAAG -AAA- AAAAG AAAAG AAAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG -AAAAG AAAAG AAAAG AAAAG
15861805 TAAGAAAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
4 6 0.19
5 20 0.65
6 5 0.16
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:15861788 original size:21 final size:21
Alignment explanation
Indices: 15861758--15861804 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
15861748 CAACCACTCC
*
15861758 AAAAGGAAAAA-AGAAAAAAAG
1 AAAA-GAAAAAGAAAAAAAAAG
*
15861779 AAAAGAAAAAGAAAAGAAAAG
1 AAAAGAAAAAGAAAAAAAAAG
15861800 AAAAG
1 AAAAG
15861805 TAAGAAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (21 bp):
AAAAGAAAAAGAAAAAAAAAG
Found at i:15861789 original size:11 final size:11
Alignment explanation
Indices: 15861773--15861804 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
15861763 GAAAAAAGAA
15861773 AAAAAGAAAAG
1 AAAAAGAAAAG
15861784 AAAAAGAAAAG
1 AAAAAGAAAAG
15861795 -AAAAGAAAAG
1 AAAAAGAAAAG
15861805 TAAGAAAGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:15865096 original size:3 final size:3
Alignment explanation
Indices: 15865088--15865136 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
15865078 CCCGCGTTGT
15865088 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
15865136 T
1 T
15865137 AAATTTAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:15867485 original size:11 final size:10
Alignment explanation
Indices: 15867471--15867527 Score: 51
Period size: 11 Copynumber: 5.2 Consensus size: 10
15867461 ATTTATGATT
15867471 TGAATATGAAA
1 TGAA-ATGAAA
15867482 TGAAATTGAAA
1 TGAAA-TGAAA
*
15867493 TGAGAATGATA
1 TGA-AATGAAA
15867504 TGAAAATGGAAA
1 TG-AAAT-GAAA
*
15867516 TGAAACGAAA
1 TGAAATGAAA
15867526 TG
1 TG
15867528 GATGTTACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
10 7 0.18
11 24 0.62
12 8 0.21
ACGTcount: A:0.53, C:0.02, G:0.23, T:0.23
Consensus pattern (10 bp):
TGAAATGAAA
Found at i:15867516 original size:6 final size:5
Alignment explanation
Indices: 15867471--15867527 Score: 51
Period size: 5 Copynumber: 10.4 Consensus size: 5
15867461 ATTTATGATT
*
15867471 TGAATA TGAAA TGAAA TTGAAA TGAGAA TGATA TGAAAA TGGAAA TGAAA
1 TGAA-A TGAAA TGAAA -TGAAA TGA-AA TGAAA TG-AAA T-GAAA TGAAA
*
15867521 CGAAA TG
1 TGAAA TG
15867528 GATGTTACAA
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
5 21 0.49
6 21 0.49
7 1 0.02
ACGTcount: A:0.53, C:0.02, G:0.23, T:0.23
Consensus pattern (5 bp):
TGAAA
Found at i:15869233 original size:9 final size:9
Alignment explanation
Indices: 15869219--15869243 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
15869209 CTAAATTGGA
15869219 AATTAAATT
1 AATTAAATT
15869228 AATTAAATT
1 AATTAAATT
15869237 AATTAAA
1 AATTAAA
15869244 AGATGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTAAATT
Found at i:15870239 original size:57 final size:58
Alignment explanation
Indices: 15870121--15870257 Score: 179
Period size: 57 Copynumber: 2.4 Consensus size: 58
15870111 GCTAACAGGG
* * * * **
15870121 TTTAGCCTGGACTGGTAATCCTGATATAATCTCTCTTGAGCATATGTTACAATTAGGA
1 TTTAGCCTGGACTGGTAATCCTAATATAAGCTCTCTTAAGCATATATTACAAAAAGGA
* *
15870179 TTTAGCCTGGACTGATAATCCTAAT-TGAGCTCT-TCTAAGCATATATTACAAAAAGGA
1 TTTAGCCTGGACTGGTAATCCTAATATAAGCTCTCT-TAAGCATATATTACAAAAAGGA
15870236 TTTAGCCTGGACTGGTAATCCT
1 TTTAGCCTGGACTGGTAATCCT
15870258 GTTATATGTT
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
56 1 0.01
57 45 0.65
58 23 0.33
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34
Consensus pattern (58 bp):
TTTAGCCTGGACTGGTAATCCTAATATAAGCTCTCTTAAGCATATATTACAAAAAGGA
Found at i:15878420 original size:21 final size:21
Alignment explanation
Indices: 15878392--15878485 Score: 109
Period size: 21 Copynumber: 4.5 Consensus size: 21
15878382 GTACATCATC
15878392 AACAGAAGCTCAT-AGAGCTG
1 AACAGAAGCTCATGAGAGCTG
* *
15878412 ATTCAGAAGCTCGTGAGAGCTG
1 A-ACAGAAGCTCATGAGAGCTG
* *
15878434 AACAGAAGCTCGTGAGAGCCG
1 AACAGAAGCTCATGAGAGCTG
* * *
15878455 AATAGAAGCTCGTGAGAGTTG
1 AACAGAAGCTCATGAGAGCTG
15878476 AACAGAAGCT
1 AACAGAAGCT
15878486 TGTAAGAACT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
20 1 0.02
21 55 0.86
22 8 0.12
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATGAGAGCTG
Found at i:15878462 original size:42 final size:42
Alignment explanation
Indices: 15878392--15878485 Score: 136
Period size: 42 Copynumber: 2.2 Consensus size: 42
15878382 GTACATCATC
* *
15878392 AACAGAAGCTCATAGAGCTGATTCAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCATAGAGCCGAATCAGAAGCTCGTGAGAGCTG
* *
15878434 AACAGAAGCTCGTGAGAGCCGAAT-AGAAGCTCGTGAGAGTTG
1 AACAGAAGCTCAT-AGAGCCGAATCAGAAGCTCGTGAGAGCTG
15878476 AACAGAAGCT
1 AACAGAAGCT
15878486 TGTAAGAACT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
42 39 0.83
43 8 0.17
ACGTcount: A:0.35, C:0.18, G:0.30, T:0.17
Consensus pattern (42 bp):
AACAGAAGCTCATAGAGCCGAATCAGAAGCTCGTGAGAGCTG
Found at i:15880301 original size:44 final size:45
Alignment explanation
Indices: 15880213--15880301 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 45
15880203 AGAACAGAAA
*
15880213 TGAGCCATGTAAGTCCATATTAGAAATATGACTTTGGAGACAGGAT
1 TGAGCCATGTAAGTCCATATTA-AAATATGACATTGGAGACAGGAT
* *
15880259 TGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGA
1 TGAGCCATGTAAGTCCATATTAAAATATGACATTGGAGACAGGA
15880302 AAAATTCATG
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
44 19 0.47
46 21 0.52
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (45 bp):
TGAGCCATGTAAGTCCATATTAAAATATGACATTGGAGACAGGAT
Found at i:15880312 original size:44 final size:45
Alignment explanation
Indices: 15880215--15880320 Score: 124
Period size: 44 Copynumber: 2.4 Consensus size: 45
15880205 AACAGAAATG
* ***
15880215 AGCCATGTAAGTCCATATTAGAAATATGACTTTGGAGACAGGATTG
1 AGCCATGTAAGTCCATATTA-AAATATGACATTGGAGACAGGAAAA
* *
15880261 AGCCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAAAA
1 AGCCATGTAAGTCCATATTAAAATATGACATTGGAGACAGGAAAA
**
15880305 ATTCATGTAAGTCCAT
1 AGCCATGTAAGTCCAT
15880321 GTCAAAGACA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 33 0.63
46 19 0.37
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (45 bp):
AGCCATGTAAGTCCATATTAAAATATGACATTGGAGACAGGAAAA
Found at i:15884446 original size:55 final size:55
Alignment explanation
Indices: 15884374--15884536 Score: 191
Period size: 55 Copynumber: 3.0 Consensus size: 55
15884364 TCTTCTTAAT
* * * * * * *
15884374 TGTTAGAATACTGCTTCTTTTGATTTGATTTTTTATATGCTTAAATCTATTGTCA
1 TGTTGGAATACTACTTCTTTTGAATAGATTGTTTATATGTTTAAATCAATTGTCA
* *
15884429 TGTTGGAATACTACTTCTTTTGAATCGATTGTTTATATGTTTAAATCAATTGTTA
1 TGTTGGAATACTACTTCTTTTGAATAGATTGTTTATATGTTTAAATCAATTGTCA
* * * * * *
15884484 TATTGAAATACTAATTCTTTTAAATAGATTGGTTATATGTTTAAATCGATTGT
1 TGTTGGAATACTACTTCTTTTGAATAGATTGTTTATATGTTTAAATCAATTGT
15884537 TACATAGCAA
Statistics
Matches: 93, Mismatches: 15, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
55 93 1.00
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (55 bp):
TGTTGGAATACTACTTCTTTTGAATAGATTGTTTATATGTTTAAATCAATTGTCA
Found at i:15894750 original size:19 final size:17
Alignment explanation
Indices: 15894718--15894769 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
15894708 ATTCGAGAAA
*
15894718 GCCTGATAAGTGATAAT
1 GCCTGATAAATGATAAT
15894735 GCCTGAAATAAATGATAAT
1 GCCTG--ATAAATGATAAT
*
15894754 GTCTGATAAATGATAA
1 GCCTGATAAATGATAA
15894770 ATGATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 16 0.52
19 15 0.48
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.29
Consensus pattern (17 bp):
GCCTGATAAATGATAAT
Found at i:15897474 original size:40 final size:40
Alignment explanation
Indices: 15897430--15897632 Score: 295
Period size: 40 Copynumber: 5.1 Consensus size: 40
15897420 AGGATTTAAT
*
15897430 CGGATATAGCT-ACTCGCTCAAATGCCTTCGGGACTTAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
**
15897470 CGGATATAGTAGTTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
15897510 CGGATATAGTAACTCACACAAATGCCTTTGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
15897550 CGGA-ATTAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
* *
15897590 CGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCC
1 CGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
15897630 CGG
1 CGG
15897633 TTATCATCCG
Statistics
Matches: 150, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 2 0.01
40 148 0.99
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:15906891 original size:40 final size:40
Alignment explanation
Indices: 15906855--15907005 Score: 241
Period size: 40 Copynumber: 3.8 Consensus size: 40
15906845 GGATATAGCT
*
15906855 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGG-ATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTA
**
15906895 GTTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
15906935 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
*
15906975 ACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCG
15907006 ATTATCATCC
Statistics
Matches: 103, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 101 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
Found at i:15909952 original size:27 final size:27
Alignment explanation
Indices: 15909898--15909951 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 27
15909888 GCAATTAATT
15909898 AATT-TTTAAAAATTAAAAATTATAAA
1 AATTATTTAAAAATTAAAAATTATAAA
15909924 AATTATTTAAAAATT-AAAATTATAAA
1 AATTATTTAAAAATTAAAAATTATAAA
15909950 AA
1 AA
15909952 AATATTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 17 0.63
27 10 0.37
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (27 bp):
AATTATTTAAAAATTAAAAATTATAAA
Found at i:15909957 original size:27 final size:27
Alignment explanation
Indices: 15909902--15909958 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
15909892 TTAATTAATT
*
15909902 TTTAAAAATTAAAAATTATAAAAATTA
1 TTTAAAAATTAAAAATTATAAAAAATA
15909929 TTTAAAAATT-AAAATTATAAAAAAATA
1 TTTAAAAATTAAAAATTAT-AAAAAATA
15909956 TTT
1 TTT
15909959 TTTAATATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 8 0.29
27 20 0.71
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (27 bp):
TTTAAAAATTAAAAATTATAAAAAATA
Found at i:15910317 original size:9 final size:8
Alignment explanation
Indices: 15910302--15910341 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
15910292 AACAGCAATA
15910302 TTAAAAAT
1 TTAAAAAT
15910310 TCTAAAAAT
1 T-TAAAAAT
*
15910319 TTTAAAAT
1 TTAAAAAT
*
15910327 TTAAAATT
1 TTAAAAAT
15910335 TTAAAAA
1 TTAAAAA
15910342 ATAATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
8 19 0.70
9 8 0.30
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (8 bp):
TTAAAAAT
Found at i:15927497 original size:16 final size:17
Alignment explanation
Indices: 15927476--15927510 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
15927466 AATTCAGTTT
15927476 AAAAATT-ATTTAATTA
1 AAAAATTAATTTAATTA
*
15927492 AAAAATTAATTTATTTA
1 AAAAATTAATTTAATTA
15927509 AA
1 AA
15927511 TTAATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AAAAATTAATTTAATTA
Found at i:15927505 original size:21 final size:23
Alignment explanation
Indices: 15927481--15927530 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
15927471 AGTTTAAAAA
*
15927481 TTATTT-AATTAAAAAATTA-AT
1 TTATTTAAATTAAAAAATAATAT
*
15927502 TTATTTAAATTAATAAATAATAT
1 TTATTTAAATTAAAAAATAATAT
15927525 TTATTT
1 TTATTT
15927531 TGAAAAGTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 6 0.24
22 11 0.44
23 8 0.32
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
TTATTTAAATTAAAAAATAATAT
Found at i:15930553 original size:40 final size:40
Alignment explanation
Indices: 15930509--15930732 Score: 219
Period size: 40 Copynumber: 5.6 Consensus size: 40
15930499 GCTACTTGTT
*
15930509 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
15930549 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * * *
15930589 CAAATGCCTTCGGG-CATAGCCCAG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
** *
15930628 CAAATGCCTTC-GGATCTTATTCCGGATT-TAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCA
* * * * *
15930668 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
15930709 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
15930733 GCATCATTCA
Statistics
Matches: 155, Mismatches: 19, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 110 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:15930609 original size:79 final size:78
Alignment explanation
Indices: 15930509--15930732 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 78
15930499 GCTACTTGTT
15930509 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CATAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
15930574 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* * * **
15930589 CAAATGCCTTCGGGCATAGCCCAGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTATTCCGG
1 CAAATGCCTTCGGGCATAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
*
15930653 ATTTAGTATCTCGCA
64 ATTTAGTAACTCGCA
* * * * * * *
15930668 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCATAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
15930732 G
63 G
15930733 GCATCATTCA
Statistics
Matches: 121, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
78 4 0.03
79 66 0.55
80 39 0.32
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCATAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
TTAGTAACTCGCA
Found at i:15938513 original size:40 final size:40
Alignment explanation
Indices: 15938469--15938692 Score: 237
Period size: 40 Copynumber: 5.6 Consensus size: 40
15938459 GCTACTCATT
*
15938469 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
15938509 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
15938549 CAAATGCCTTCGGG-CTTAGCCCAG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* *
15938588 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGG-TTATAGTAACTCGCA
* * * * *
15938628 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
15938669 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
15938693 GCATCATTCA
Statistics
Matches: 159, Mismatches: 15, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 113 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:15938580 original size:79 final size:79
Alignment explanation
Indices: 15938469--15938692 Score: 274
Period size: 79 Copynumber: 2.8 Consensus size: 79
15938459 GCTACTCATT
* * *
15938469 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
15938534 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* * *
15938549 CAAATGCCTTCGGGCTTAGCCCAGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
15938612 GATTTAGTATCTCGCA
64 GATTTAGTAACTCGCA
* * * * *
15938628 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
15938692 G
64 G
15938693 GCATCATTCA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.03
79 65 0.53
80 42 0.34
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:15938653 original size:119 final size:120
Alignment explanation
Indices: 15938469--15938690 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
15938459 GCTACTCATT
15938469 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
15938534 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCAGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCAGAATTAGTATCTCGCA
* * * **
15938588 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
15938650 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCC
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCC
15938691 GGGCATCATT
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 65 0.73
120 18 0.20
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCAGAATTAGTATCTCGCA
Found at i:15941877 original size:40 final size:40
Alignment explanation
Indices: 15941829--15942017 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
15941819 GCAAACACAT
* *
15941829 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
15941869 TTACCTTCGGGTCTTAGTCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
15941909 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAA--CTCGCATAA
15941951 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
15941991 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
15942018 ATCCAATGCT
Statistics
Matches: 137, Mismatches: 10, Indels: 4
0.91 0.07 0.03
Matches are distributed among these distances:
40 98 0.72
42 39 0.28
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:15941973 original size:82 final size:80
Alignment explanation
Indices: 15941829--15942017 Score: 306
Period size: 82 Copynumber: 2.3 Consensus size: 80
15941819 GCAAACACAT
* * *
15941829 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTACCTTCGGGTCTTAGTCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTACCTTCGGGTCTTAGCCCGGATA
*
15941894 TATCATCTCGCATAA
66 TATCAACTCGCATAA
* *
15941909 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCTCGCATAATTGCCTTCGGGTCTTAGCCCGGA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAA--CTCGCATAATTACCTTCGGGTCTTAGCCCGGA
15941974 TATATCAACTCGCATAA
64 TATATCAACTCGCATAA
15941991 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
15942018 ATCCAATGCT
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
80 28 0.28
82 72 0.72
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (80 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTACCTTCGGGTCTTAGCCCGGATA
TATCAACTCGCATAA
Found at i:15950612 original size:42 final size:40
Alignment explanation
Indices: 15950484--15950671 Score: 306
Period size: 40 Copynumber: 4.7 Consensus size: 40
15950474 GCAAACACAT
* *
15950484 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
15950524 TT-CCTTCGGGTCTTAGTCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
15950563 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAA--CTCGCATAA
15950605 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
15950645 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
15950672 ATCCAATGCT
Statistics
Matches: 137, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
39 35 0.26
40 63 0.46
42 39 0.28
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:15950640 original size:82 final size:79
Alignment explanation
Indices: 15950484--15950671 Score: 304
Period size: 82 Copynumber: 2.3 Consensus size: 79
15950474 GCAAACACAT
* * *
15950484 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAATTCCTTCGGGTCTTAGTCCGGATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTCCTTCGGGTCTTAGCCCGGATAT
*
15950549 ATCATCTCGCATAA
66 ATCAACTCGCATAA
*
15950563 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCTCGCATAATTGCCTTCGGGTCTTAGCCCGGA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAA--CTCGCATAATT-CCTTCGGGTCTTAGCCCGGA
15950628 TATATCAACTCGCATAA
63 TATATCAACTCGCATAA
15950645 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
15950672 ATCCAATGCT
Statistics
Matches: 100, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
79 28 0.28
81 11 0.11
82 61 0.61
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.31
Consensus pattern (79 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTCCTTCGGGTCTTAGCCCGGATAT
ATCAACTCGCATAA
Found at i:15955948 original size:37 final size:36
Alignment explanation
Indices: 15955864--15955964 Score: 114
Period size: 37 Copynumber: 2.8 Consensus size: 36
15955854 ATCATAGTGG
* * *
15955864 CATGCTTAACATGCGAATCAGAATA-AAAAATTTGA
1 CATGCTTAACATGCGAATCAGAACATCAAAATTTAA
*
15955899 CATGCTTAACATGCGAATCAGAACATCAGAATATTAA
1 CATGCTTAACATGCGAATCAGAACATCAAAAT-TTAA
* ** *
15955936 CATGTTTAACATGTAAATTAGAACATCAA
1 CATGCTTAACATGCGAATCAGAACATCAA
15955965 TAACTCAATA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
35 24 0.44
36 4 0.07
37 27 0.49
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.27
Consensus pattern (36 bp):
CATGCTTAACATGCGAATCAGAACATCAAAATTTAA
Found at i:15956874 original size:25 final size:25
Alignment explanation
Indices: 15956823--15956874 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
15956813 GGTGGTCGAT
* * *
15956823 GGCGGTGGTGCGACAGTGCAACGGA
1 GGCGATGGTGCGACAGTACAACAGA
* *
15956848 GGCGATGGTGCGATAGTATAACAGA
1 GGCGATGGTGCGACAGTACAACAGA
15956873 GG
1 GG
15956875 TAGTGGTGAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.15, G:0.44, T:0.15
Consensus pattern (25 bp):
GGCGATGGTGCGACAGTACAACAGA
Found at i:15956923 original size:3 final size:3
Alignment explanation
Indices: 15956915--15956939 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15956905 GTGACCTTGA
15956915 GTG GTG GTG GTG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG G
15956940 AGTGTAGGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:15958958 original size:20 final size:20
Alignment explanation
Indices: 15958933--15958971 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
15958923 TTTTGAAAAG
15958933 CTCTGTTTT-AAGTTACGATA
1 CTCTGTTTTCAA-TTACGATA
15958953 CTCTGTTTTCAATTACGAT
1 CTCTGTTTTCAATTACGAT
15958972 TTTAAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 16 0.89
21 2 0.11
ACGTcount: A:0.23, C:0.18, G:0.13, T:0.46
Consensus pattern (20 bp):
CTCTGTTTTCAATTACGATA
Found at i:15959113 original size:40 final size:40
Alignment explanation
Indices: 15959058--15959279 Score: 205
Period size: 40 Copynumber: 5.5 Consensus size: 40
15959048 TTTTTCAAGC
* * *
15959058 TGTGTATCAGAAAAGCTCCCATGTGAGATTATGGATAAAT
1 TGTGTATCAGCAAAGCTCCCATGTGAGCTTATGGATAAGT
** * * *
15959098 TGTGTATCAGCAAAGCTTTCTTGTGAGTTTATGGATAAGC
1 TGTGTATCAGCAAAGCTCCCATGTGAGCTTATGGATAAGT
* * *
15959138 TGTGTATCAGTAAAGTTCCCTTGTGAGCTTATGGATAAGT
1 TGTGTATCAGCAAAGCTCCCATGTGAGCTTATGGATAAGT
* * * * *
15959178 TGTGTATTAGCACAGCTCCCCTGTGAGC-TAAGGACAAGT
1 TGTGTATCAGCAAAGCTCCCATGTGAGCTTATGGATAAGT
* * ** *
15959217 TGTGCATCA-AAGAAGCTCCCCACATGAGCTTAAGTGATGAAGT
1 TGTGTATCAGCA-AAGCT-CCCATGTGAGCTTATG-GAT-AAGT
15959260 TGTGTATCAGCAAAGCTCCC
1 TGTGTATCAGCAAAGCTCCC
15959280 CATGCGACTT
Statistics
Matches: 146, Mismatches: 30, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
38 1 0.01
39 20 0.14
40 98 0.67
41 4 0.03
42 5 0.03
43 17 0.12
44 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (40 bp):
TGTGTATCAGCAAAGCTCCCATGTGAGCTTATGGATAAGT
Found at i:15962027 original size:21 final size:21
Alignment explanation
Indices: 15962001--15962042 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
15961991 GTGGAAAACA
*
15962001 ATGGGCAAACCTTAGGTGATG
1 ATGGGCAAACCTCAGGTGATG
15962022 ATGGGCAAACCTCAGGTGATG
1 ATGGGCAAACCTCAGGTGATG
15962043 CTGAGTTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.33, T:0.21
Consensus pattern (21 bp):
ATGGGCAAACCTCAGGTGATG
Found at i:15969417 original size:14 final size:14
Alignment explanation
Indices: 15969381--15969419 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
15969371 TTGTTTCACT
*
15969381 GAAAATGACTTCCA
1 GAAAATGATTTCCA
**
15969395 GAAAATGATTTCTG
1 GAAAATGATTTCCA
15969409 GAAAATGATTT
1 GAAAATGATTT
15969420 ACTTTTCTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCA
Found at i:15969993 original size:20 final size:22
Alignment explanation
Indices: 15969964--15970024 Score: 63
Period size: 22 Copynumber: 2.8 Consensus size: 22
15969954 AATAAAATTG
*
15969964 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
15969984 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
* * *
15970006 TATTAATAATTTATTATTT
1 AAATAATAAATTA-TATTT
15970025 GAATAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 9 0.26
21 2 0.06
22 18 0.53
23 5 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:15972300 original size:17 final size:17
Alignment explanation
Indices: 15972280--15972331 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
15972270 TTTAAAAAAA
15972280 ATTTATG-ATCTTTTTAT
1 ATTTATGAAT-TTTTTAT
15972297 ATTTTATGAATTTTTTAT
1 A-TTTATGAATTTTTTAT
15972315 -TTT-TGAATATTTTTAT
1 ATTTATGAAT-TTTTTAT
15972331 A
1 A
15972332 ATTTTTAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
15 5 0.16
16 10 0.32
17 1 0.03
18 13 0.42
19 2 0.06
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (17 bp):
ATTTATGAATTTTTTAT
Found at i:15972304 original size:18 final size:18
Alignment explanation
Indices: 15972281--15972336 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 18
15972271 TTAAAAAAAA
*
15972281 TTTATGATCTTTTTATAT
1 TTTATGATATTTTTATAT
15972299 TTTATGA-ATTTTT-TAT
1 TTTATGATATTTTTATAT
15972315 TTT-TGAATATTTTTATAAT
1 TTTATG-ATATTTTTAT-AT
15972334 TTT
1 TTT
15972337 TAAATTATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
15 2 0.06
16 7 0.21
17 11 0.33
18 8 0.24
19 5 0.15
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTATGATATTTTTATAT
Found at i:15972315 original size:16 final size:15
Alignment explanation
Indices: 15972290--15972330 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 15
15972280 ATTTATGATC
15972290 TTTTTATATTTTATGAA
1 TTTTT-TATTTT-TGAA
15972307 TTTTTTATTTTTGAA
1 TTTTTTATTTTTGAA
15972322 TATTTTTAT
1 T-TTTTTAT
15972331 AATTTTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.22
16 13 0.57
17 5 0.22
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (15 bp):
TTTTTTATTTTTGAA
Found at i:15972540 original size:16 final size:16
Alignment explanation
Indices: 15972519--15972563 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
15972509 ATTTAGTTTA
15972519 AAAAAATTAAATTTTT
1 AAAAAATTAAATTTTT
*
15972535 AAAAAATATAAA-TATT
1 AAAAAAT-TAAATTTTT
15972551 -AAAAATTAAATTT
1 AAAAAATTAAATTT
15972564 CTCGTTATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 4 0.16
15 7 0.28
16 10 0.40
17 4 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAAAATTAAATTTTT
Found at i:15986666 original size:25 final size:25
Alignment explanation
Indices: 15986638--15986686 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
15986628 AACCCTCTCT
*
15986638 TGAGCCATATAACGGGAAGCTTATG
1 TGAGCCATATAACGAGAAGCTTATG
*
15986663 TGAGCCATGTAACGAGAAGCTTAT
1 TGAGCCATATAACGAGAAGCTTAT
15986687 TCAGGCTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (25 bp):
TGAGCCATATAACGAGAAGCTTATG
Found at i:15986774 original size:23 final size:23
Alignment explanation
Indices: 15986744--15986789 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15986734 TGAAGAACCA
15986744 TATCGGGAAGCTCACAAAGAGCC
1 TATCGGGAAGCTCACAAAGAGCC
* *
15986767 TATCGGGAAGTTCATAAAGAGCC
1 TATCGGGAAGCTCACAAAGAGCC
15986790 ATGTAACGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (23 bp):
TATCGGGAAGCTCACAAAGAGCC
Found at i:15990099 original size:17 final size:17
Alignment explanation
Indices: 15990077--15990114 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
15990067 GAATTGGACT
15990077 TGTGGGCCACATGGGCG
1 TGTGGGCCACATGGGCG
*
15990094 TGTGGGCCACATGTGCG
1 TGTGGGCCACATGGGCG
15990111 TGTG
1 TGTG
15990115 ATATATGGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.11, C:0.21, G:0.45, T:0.24
Consensus pattern (17 bp):
TGTGGGCCACATGGGCG
Found at i:15998404 original size:10 final size:10
Alignment explanation
Indices: 15998389--15998419 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
15998379 ATGACAATTT
15998389 TTTAAATATA
1 TTTAAATATA
15998399 TTTAAATATA
1 TTTAAATATA
15998409 -TTAAATATA
1 TTTAAATATA
15998418 TT
1 TT
15998420 ATTTATTATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTTAAATATA
Found at i:15998414 original size:9 final size:9
Alignment explanation
Indices: 15998390--15998420 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
15998380 TGACAATTTT
15998390 TTAAATATA
1 TTAAATATA
15998399 TTTAAATATA
1 -TTAAATATA
15998409 TTAAATATA
1 TTAAATATA
15998418 TTA
1 TTA
15998421 TTTATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
TTAAATATA
Found at i:16004542 original size:52 final size:49
Alignment explanation
Indices: 16004469--16004580 Score: 134
Period size: 52 Copynumber: 2.2 Consensus size: 49
16004459 AATGGTAAAA
* * * * *
16004469 TAAAAAATTTAATCCTTAACATTTATATATTATATCAATTTAATCGTAATTC
1 TAAAAAAATTAACCCTGAACATTTACATATTATATC--TTCAAT-GTAATTC
* *
16004521 TAAAAAAATTAACCCTGAACATTTACATATTATATCTTCAATTTGATTC
1 TAAAAAAATTAACCCTGAACATTTACATATTATATCTTCAATGTAATTC
16004570 TAAAAAAATTA
1 TAAAAAAATTA
16004581 TAAATTTCTT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
49 16 0.30
50 5 0.09
52 32 0.60
ACGTcount: A:0.45, C:0.12, G:0.03, T:0.40
Consensus pattern (49 bp):
TAAAAAAATTAACCCTGAACATTTACATATTATATCTTCAATGTAATTC
Found at i:16004654 original size:38 final size:39
Alignment explanation
Indices: 16004589--16004665 Score: 104
Period size: 38 Copynumber: 2.0 Consensus size: 39
16004579 TATAAATTTC
16004589 TTTTCTTTTTTACTTCTATTCTGTTTTCCTTCTCTTTTT
1 TTTTCTTTTTTACTTCTATTCTGTTTTCCTTCTCTTTTT
** *
16004628 TTTTCTTTTTTTTTTC-ATT-TGATTTTCCTTTTCTTTTT
1 TTTTCTTTTTTACTTCTATTCTG-TTTTCCTTCTCTTTTT
16004666 CGTCCTCACC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
37 2 0.06
38 18 0.53
39 14 0.41
ACGTcount: A:0.05, C:0.17, G:0.03, T:0.75
Consensus pattern (39 bp):
TTTTCTTTTTTACTTCTATTCTGTTTTCCTTCTCTTTTT
Found at i:16012524 original size:63 final size:63
Alignment explanation
Indices: 16012447--16012571 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
16012437 AGAGAATAAA
*
16012447 ATGAACTGTATTCATGCAAGATTAATTATCAGAAATTCCTAAAAGATACAGTTAGTTTCTTGC
1 ATGAACTGTATTCATGCAAGATTAATTATCAGAAATTCCTAAAACATACAGTTAGTTTCTTGC
16012510 ATGAACTGTATTCATGCAAGATTAATTATCAGAAATTCCTAAAACATACAGTTAGTTTCTTG
1 ATGAACTGTATTCATGCAAGATTAATTATCAGAAATTCCTAAAACATACAGTTAGTTTCTTG
16012572 GATTGCAATT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (63 bp):
ATGAACTGTATTCATGCAAGATTAATTATCAGAAATTCCTAAAACATACAGTTAGTTTCTTGC
Found at i:16013901 original size:23 final size:22
Alignment explanation
Indices: 16013875--16013924 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
16013865 ATATAAATTT
16013875 TAAAATC-TAAAAACTAAAACAA
1 TAAAATCATAAAAA-TAAAACAA
* *
16013897 CTAAATTCATAAAAATAAAATAA
1 -TAAAATCATAAAAATAAAACAA
16013920 TAAAA
1 TAAAA
16013925 ATTTTAGAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
22 4 0.17
23 13 0.57
24 6 0.26
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.22
Consensus pattern (22 bp):
TAAAATCATAAAAATAAAACAA
Found at i:16014597 original size:29 final size:31
Alignment explanation
Indices: 16014547--16014606 Score: 88
Period size: 29 Copynumber: 2.0 Consensus size: 31
16014537 TTTATGTTAA
*
16014547 TTATAAATATAATTATAATTATATTATTTTT
1 TTATAAATATAATTATAATTATATTAATTTT
*
16014578 TTATAAATA-ACTTAT-ATTATATTAATTTT
1 TTATAAATATAATTATAATTATATTAATTTT
16014607 AAAAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 13 0.48
30 5 0.19
31 9 0.33
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (31 bp):
TTATAAATATAATTATAATTATATTAATTTT
Found at i:16014854 original size:86 final size:85
Alignment explanation
Indices: 16014698--16014863 Score: 228
Period size: 86 Copynumber: 1.9 Consensus size: 85
16014688 ATTTTTAATT
* * * *
16014698 TTTTTTAAAAAAGCAATTAAGTCCTTATTTTTTTCACTCAATTGGGTACTTAAACTTTTAAAATG
1 TTTTTTAAAAAAGCAATTAAGTCCTTATTTTTTGCACTCAATTAGGTACTTAAACTTTCAAAATA
16014763 CATCAAAAAAGCCCTCAAAA
66 CATCAAAAAAGCCCTCAAAA
* *
16014783 TTTTTTAAATAAAGCAATTAAGGTCCTT-TTTTTTGCACTCAATTAGGTACTTGAA-TTGTCAAT
1 TTTTTTAAA-AAAGCAATTAA-GTCCTTATTTTTTGCACTCAATTAGGTACTTAAACTT-TCAAA
*
16014846 ATATATCAAAAAAGCCCT
63 ATACATCAAAAAAGCCCT
16014864 TTCACTGTTA
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
85 11 0.15
86 54 0.76
87 6 0.08
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.38
Consensus pattern (85 bp):
TTTTTTAAAAAAGCAATTAAGTCCTTATTTTTTGCACTCAATTAGGTACTTAAACTTTCAAAATA
CATCAAAAAAGCCCTCAAAA
Found at i:16015048 original size:20 final size:18
Alignment explanation
Indices: 16015023--16015064 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
16015013 ATATAATTAT
16015023 AAATCAGAACAAAATTATAA
1 AAATCA-AA-AAAATTATAA
*
16015043 AAATCATAAAAATTATAA
1 AAATCAAAAAAATTATAA
16015061 AAAT
1 AAAT
16015065 TTATTAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 1 0.05
20 6 0.29
ACGTcount: A:0.67, C:0.07, G:0.02, T:0.24
Consensus pattern (18 bp):
AAATCAAAAAAATTATAA
Found at i:16015061 original size:50 final size:48
Alignment explanation
Indices: 16015007--16015142 Score: 120
Period size: 50 Copynumber: 2.8 Consensus size: 48
16014997 TTAAATTTTA
* *
16015007 ATAAAAATATAATTATAAATCAGAACAAAATTATAAAAAT-CATAAAAATT
1 ATAAAAAT-T-ATTATAAATCAGAA-AAAATTATAAAAATAAAAAAAAATT
*
16015057 ATAAAAATTTATTA-AAAGC-GTAAAAAATTATAAAATATAGAAAAAAAATT
1 ATAAAAA-TTATTATAAATCAG-AAAAAATTATAAAA-ATA-AAAAAAAATT
*
16015107 AT-AAAATT-TTATAAAGTCATAAGAAAATTATAAAAA
1 ATAAAAATTATTATAAA-TCAGAA-AAAATTATAAAAA
16015143 AGGAAAGAAA
Statistics
Matches: 72, Mismatches: 5, Indels: 19
0.75 0.05 0.20
Matches are distributed among these distances:
47 16 0.22
48 13 0.18
49 12 0.17
50 30 0.42
51 1 0.01
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (48 bp):
ATAAAAATTATTATAAATCAGAAAAAATTATAAAAATAAAAAAAAATT
Found at i:16015063 original size:10 final size:10
Alignment explanation
Indices: 16015033--16015143 Score: 52
Period size: 10 Copynumber: 11.4 Consensus size: 10
16015023 AAATCAGAAC
16015033 AAAATTAT-A
1 AAAATTATAA
*
16015042 AAAATCAT-A
1 AAAATTATAA
16015051 AAAATTATAA
1 AAAATTATAA
* *
16015061 AAATTTAT-T
1 AAAATTATAA
***
16015070 AAAAGCGTAA
1 AAAATTATAA
16015080 AAAATTATAA
1 AAAATTATAA
* * *
16015090 AATATAGAAAA
1 AAAAT-TATAA
16015101 AAAATTAT--
1 AAAATTATAA
* *
16015109 AAAATTTTAT
1 AAAATTATAA
* *
16015119 AAAGTCATAA
1 AAAATTATAA
16015129 GAAAATTATAA
1 -AAAATTATAA
16015140 AAAA
1 AAAA
16015144 GGAAAGAAAT
Statistics
Matches: 71, Mismatches: 25, Indels: 11
0.66 0.23 0.10
Matches are distributed among these distances:
8 7 0.10
9 19 0.27
10 30 0.42
11 15 0.21
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.29
Consensus pattern (10 bp):
AAAATTATAA
Found at i:16015091 original size:9 final size:9
Alignment explanation
Indices: 16015033--16015065 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
16015023 AAATCAGAAC
16015033 AAAATTATA
1 AAAATTATA
*
16015042 AAAATCATA
1 AAAATTATA
16015051 AAAATTATA
1 AAAATTATA
16015060 AAAATT
1 AAAATT
16015066 TATTAAAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (9 bp):
AAAATTATA
Found at i:16015311 original size:21 final size:21
Alignment explanation
Indices: 16015262--16015304 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
16015252 CACACGCCAT
16015262 GTTGTATTGCTACACATGATG
1 GTTGTATTGCTACACATGATG
16015283 GTTGTATTGCTACACATGATG
1 GTTGTATTGCTACACATGATG
16015304 G
1 G
16015305 CTTTATTTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (21 bp):
GTTGTATTGCTACACATGATG
Found at i:16017398 original size:35 final size:35
Alignment explanation
Indices: 16017352--16017422 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
16017342 AGATTTGATC
16017352 TTCCAGGTGTTTTATTACAAGAAGATCTCTGCTAT
1 TTCCAGGTGTTTTATTACAAGAAGATCTCTGCTAT
16017387 TTCCAGGTGTTTTATTACAAGAAGATCTCTGCTAT
1 TTCCAGGTGTTTTATTACAAGAAGATCTCTGCTAT
16017422 T
1 T
16017423 ATACTCTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.41
Consensus pattern (35 bp):
TTCCAGGTGTTTTATTACAAGAAGATCTCTGCTAT
Found at i:16017809 original size:13 final size:13
Alignment explanation
Indices: 16017791--16017816 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16017781 CGTGAATAAA
16017791 TTTCTATATCCAT
1 TTTCTATATCCAT
16017804 TTTCTATATCCAT
1 TTTCTATATCCAT
16017817 CTCTATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (13 bp):
TTTCTATATCCAT
Found at i:16022651 original size:21 final size:20
Alignment explanation
Indices: 16022604--16022652 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
16022594 TAAAACAAAT
*
16022604 AAAGTAAATAAAGAATAAACA
1 AAAG-AAATAAAGAATAAAAA
16022625 AAAGAAA-AAAGAATAGAAAA
1 AAAGAAATAAAGAATA-AAAA
16022645 GAAAGAAA
1 -AAAGAAA
16022653 GAGGGGGACA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 8 0.32
20 6 0.24
21 11 0.44
ACGTcount: A:0.76, C:0.02, G:0.14, T:0.08
Consensus pattern (20 bp):
AAAGAAATAAAGAATAAAAA
Found at i:16022703 original size:12 final size:12
Alignment explanation
Indices: 16022686--16022710 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16022676 AAACAAAGAA
16022686 AGAAAGAAAAAG
1 AGAAAGAAAAAG
16022698 AGAAAGAAAAAG
1 AGAAAGAAAAAG
16022710 A
1 A
16022711 AGGAGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:16032842 original size:40 final size:40
Alignment explanation
Indices: 16032772--16033029 Score: 369
Period size: 40 Copynumber: 6.5 Consensus size: 40
16032762 AAGCCAAGTA
* * * * *
16032772 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
16032811 TCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16032851 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16032891 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
16032931 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
16032971 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
16033011 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16033030 TTATCATCCA
Statistics
Matches: 201, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 12 0.06
40 189 0.94
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:16038477 original size:40 final size:40
Alignment explanation
Indices: 16038401--16038656 Score: 320
Period size: 40 Copynumber: 6.4 Consensus size: 40
16038391 CTGTCCGCGC
* * * * * *
16038401 TAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGAT
1 TAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGT
* * * *
16038441 TAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
16038481 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
16038521 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
16038561 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* * * * *
16038601 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
16038640 TATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATT
16038657 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.18
40 153 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
Found at i:16038676 original size:79 final size:80
Alignment explanation
Indices: 16038433--16038691 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
16038423 AAGTGAATAT
* * * * * *
16038433 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
16038497 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
16038513 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
16038578 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
16038593 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
16038657 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
16038672 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
16038692 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:16044142 original size:40 final size:40
Alignment explanation
Indices: 16044072--16044289 Score: 253
Period size: 40 Copynumber: 5.5 Consensus size: 40
16044062 AAGCCAAGTA
* * * * *
16044072 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
16044111 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
16044151 CCTTCAGGACTTAGCCCAGATATAGTAACTCGCAGAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
16044191 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * *
16044231 CCTTTGGGACTTAGCCC-GAAACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
16044271 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16044290 TTATCATCCA
Statistics
Matches: 153, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
39 15 0.10
40 137 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:16052308 original size:40 final size:40
Alignment explanation
Indices: 16052238--16052495 Score: 387
Period size: 40 Copynumber: 6.5 Consensus size: 40
16052228 AAGCCAAGTA
* * * * *
16052238 CCTTCGGGATTTA-ACCGGGTATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
16052277 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16052317 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16052357 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16052397 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
16052437 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
16052477 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16052496 TTATCATCCA
Statistics
Matches: 205, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
39 13 0.06
40 192 0.94
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:16063620 original size:40 final size:39
Alignment explanation
Indices: 16063536--16063720 Score: 185
Period size: 40 Copynumber: 4.6 Consensus size: 39
16063526 TTGAATGATG
* * * *
16063536 TCCGGGCTAAGTGCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
16063576 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
16063616 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
16063655 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
16063696 -CCGGGGTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
16063721 AACAAGTAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16063742 original size:79 final size:79
Alignment explanation
Indices: 16063589--16063753 Score: 174
Period size: 79 Copynumber: 2.1 Consensus size: 79
16063579 GGACTAAGAT
* ** *
16063589 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
* *
16063654 ATCTGGGTTAAGTC
66 ATCTCGGTTAAATC
* * * *
16063668 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGGTATGTCCCGAAGGCATTTGAACAAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACAAGTTA-C
* *
16063731 TATATC-CGGTTAAATT
63 TAAATCTCGGTTAAATC
16063747 CCGAAGG
1 CCGAAGG
16063754 TATGTGATTT
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.66
80 22 0.31
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACAAGTTACTAA
ATCTCGGTTAAATC
Found at i:16082355 original size:40 final size:40
Alignment explanation
Indices: 16082164--16082348 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
16082154 TTGAATGATG
* * * * * *
16082164 TCCGGGCTAAGTGCCGAA-GCCTTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
16082204 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
16082244 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
16082283 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
16082324 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
16082349 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
39 33 0.27
40 77 0.63
41 12 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16082370 original size:79 final size:79
Alignment explanation
Indices: 16082217--16082381 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
16082207 GGACTAAGAT
* * **
16082217 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
16082282 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
16082296 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
16082359 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
16082375 CCGAAGG
1 CCGAAGG
16082382 TATGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:16085638 original size:27 final size:27
Alignment explanation
Indices: 16085608--16085785 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
16085598 ATATCGAGTC
* * * *
16085608 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
16085635 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16085662 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
16085690 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16085717 CGCACACTTAGTGC-ATCATACTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16085744 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16085771 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16085786 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16085747 original size:82 final size:81
Alignment explanation
Indices: 16085629--16085784 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
16085619 TGCTATATAA
*
16085629 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
16085694 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
16085711 TCAATTCGCACACTTAGTGC-ATCATACTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
16085775 CACTTAGTGC
65 CACTTAGTGC
16085785 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16088654 original size:27 final size:27
Alignment explanation
Indices: 16088624--16088801 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
16088614 ATATCGAGTC
* * * *
16088624 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
16088651 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16088678 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
16088706 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16088733 CGCACACTTAGTGC-ATCATACTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16088760 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16088787 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16088802 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16088763 original size:82 final size:81
Alignment explanation
Indices: 16088645--16088800 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
16088635 TGCTATATAA
*
16088645 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
16088710 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
16088727 TCAATTCGCACACTTAGTGC-ATCATACTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
16088791 CACTTAGTGC
65 CACTTAGTGC
16088801 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16104498 original size:19 final size:21
Alignment explanation
Indices: 16104461--16104501 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
16104451 TCAAGATTAA
16104461 ATTAAATTAAATATTAAATATT
1 ATTAAATTAAATA-TAAATATT
16104483 ATTAAATT-AATA-AAATATT
1 ATTAAATTAAATATAAATATT
16104502 TATCTACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
21 4 0.21
22 8 0.42
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTAAATTAAATATAAATATT
Found at i:16105667 original size:39 final size:39
Alignment explanation
Indices: 16105551--16105670 Score: 177
Period size: 39 Copynumber: 3.1 Consensus size: 39
16105541 GGATTCCATT
* * *
16105551 CCAGCACGTAGCCTGCGGACTTCAAGTCTGGATATATTT
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
*
16105590 CCAGCACATAGCCTGCGGACTTCAAGTCCAGATATATTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
* * *
16105629 CCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
16105668 CCA
1 CCA
16105671 ATATCATGCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 73 1.00
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (39 bp):
CCAGCACATAGCCTGCGGACTTCAAGTCCGGATATATTC
Found at i:16112199 original size:39 final size:39
Alignment explanation
Indices: 16112156--16112273 Score: 155
Period size: 39 Copynumber: 3.0 Consensus size: 39
16112146 CCAGATTCCA
*
16112156 TTCCAGCACGTAGCCTGCGGACTTCAAGTTAGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTTAGGATATAT
**
16112195 TTCCAGCACATAGCCTGCGGACTTCAAGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTTAGGATATAT
* * * * * *
16112234 TCCCAGCATACAGCCTGCGGACCTCATGTTTGGATATAT
1 TTCCAGCACATAGCCTGCGGACTTCAAGTTAGGATATAT
16112273 T
1 T
16112274 CCCAATATCA
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACTTCAAGTTAGGATATAT
Found at i:16117739 original size:13 final size:13
Alignment explanation
Indices: 16117717--16117750 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
16117707 ATGTTTGGAA
16117717 ATGT-ATGTTTTT
1 ATGTAATGTTTTT
16117729 ATGTAATGTTTTT
1 ATGTAATGTTTTT
16117742 ACTGTAATG
1 A-TGTAATG
16117751 CACTGTAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.20
13 9 0.45
14 7 0.35
ACGTcount: A:0.24, C:0.03, G:0.18, T:0.56
Consensus pattern (13 bp):
ATGTAATGTTTTT
Found at i:16117741 original size:14 final size:14
Alignment explanation
Indices: 16117721--16117750 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
16117711 TTGGAAATGT
16117721 ATGTTTTTA-TGTA
1 ATGTTTTTACTGTA
16117734 ATGTTTTTACTGTA
1 ATGTTTTTACTGTA
16117748 ATG
1 ATG
16117751 CACTGTAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.23, C:0.03, G:0.17, T:0.57
Consensus pattern (14 bp):
ATGTTTTTACTGTA
Found at i:16118940 original size:27 final size:26
Alignment explanation
Indices: 16118910--16118987 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 26
16118900 ACGATCCCGG
* * *
16118910 TGGAGTACTCCGTGTTTATTTTTCTGA
1 TGGACTAC-CCGTGTTTATTGTCCTGA
*
16118937 TGGACTACCCTGTGTTTATTGTCCTGT
1 TGGACTACCC-GTGTTTATTGTCCTGA
16118964 TGGACTACCCCGTGTTTATTGTCC
1 TGGACTA-CCCGTGTTTATTGTCC
16118988 CAACGAACTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.04
27 40 0.89
28 3 0.07
ACGTcount: A:0.13, C:0.22, G:0.22, T:0.44
Consensus pattern (26 bp):
TGGACTACCCGTGTTTATTGTCCTGA
Found at i:16118997 original size:27 final size:27
Alignment explanation
Indices: 16118940--16118999 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
16118930 TTTCTGATGG
* **** *
16118940 ACTACCCTGTGTTTATTGTCCTGTTGG
1 ACTACCCCGTGTTTATTGTCCCAACGA
16118967 ACTACCCCGTGTTTATTGTCCCAACGA
1 ACTACCCCGTGTTTATTGTCCCAACGA
16118994 ACTACC
1 ACTACC
16119000 AAAGGATGCC
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.30, G:0.17, T:0.35
Consensus pattern (27 bp):
ACTACCCCGTGTTTATTGTCCCAACGA
Found at i:16119126 original size:45 final size:45
Alignment explanation
Indices: 16119004--16119132 Score: 150
Period size: 45 Copynumber: 2.9 Consensus size: 45
16118994 ACTACCAAAG
* * * *
16119004 GATGCCATAGCATCTTTCAGCTATGGTCTTAATAATATTTATCAT
1 GATGCCATAACATCTTTCAGCTATGGTCTTACTAATTTTTAACAT
* * * * *
16119049 GATGCCATAACATATTTTAGCTACGGTGTTACTCATTTTTAACAT
1 GATGCCATAACATCTTTCAGCTATGGTCTTACTAATTTTTAACAT
* * *
16119094 GATGTCATAACATCTTTCAACTATGGTCTTACTTATTTT
1 GATGCCATAACATCTTTCAGCTATGGTCTTACTAATTTT
16119133 AGGCATATAG
Statistics
Matches: 68, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.42
Consensus pattern (45 bp):
GATGCCATAACATCTTTCAGCTATGGTCTTACTAATTTTTAACAT
Found at i:16125991 original size:39 final size:40
Alignment explanation
Indices: 16125946--16126117 Score: 213
Period size: 40 Copynumber: 4.3 Consensus size: 40
16125936 GCTCCTCGTT
* * *
16125946 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* *
16125986 C-AATGCCTTCGAGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
16126025 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
16126065 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
16126105 CAAATGCCTTCGG
1 CAAATGCCTTCGG
16126118 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 34 0.29
40 79 0.68
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:16126046 original size:40 final size:39
Alignment explanation
Indices: 16125948--16126170 Score: 207
Period size: 40 Copynumber: 5.6 Consensus size: 39
16125938 TCCTCGTTCA
* * * *
16125948 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
16125987 AATGCCTTCGAGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
16126026 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
16126066 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
16126106 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
16126147 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
16126171 CAGCATTCAA
Statistics
Matches: 155, Mismatches: 23, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
39 39 0.25
40 104 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:16126130 original size:80 final size:79
Alignment explanation
Indices: 16125946--16126170 Score: 231
Period size: 80 Copynumber: 2.8 Consensus size: 79
16125936 GCTCCTCGTT
* * * * * *
16125946 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGAGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
16126010 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
16126025 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
16126090 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
16126105 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
16126169 GA
63 GA
16126171 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 68 0.56
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Done.