Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 51 of 259
Found at i:16126179 original size:41 final size:41
Alignment explanation
Indices: 16126102--16126179 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
16126092 TTTGTATCTC
* * *
16126102 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
16126143 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
16126180 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:16133939 original size:39 final size:40
Alignment explanation
Indices: 16133894--16134065 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
16133884 GCTCCTCGTT
* * *
16133894 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
16133934 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
16133973 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
16134013 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
16134053 CAAATGCCTTCGG
1 CAAATGCCTTCGG
16134066 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:16133994 original size:40 final size:39
Alignment explanation
Indices: 16133896--16134118 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
16133886 TCCTCGTTCA
* * * *
16133896 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
16133935 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
16133974 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
16134014 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
16134054 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
16134095 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
16134119 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:16134078 original size:80 final size:79
Alignment explanation
Indices: 16133894--16134118 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
16133884 GCTCCTCGTT
* * * * *
16133894 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
16133958 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
16133973 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
16134038 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
16134053 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
16134117 GA
63 GA
16134119 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:16134127 original size:41 final size:41
Alignment explanation
Indices: 16134050--16134127 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
16134040 TTTGTATCTC
* * *
16134050 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
16134091 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
16134128 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:16136866 original size:39 final size:39
Alignment explanation
Indices: 16136771--16137031 Score: 311
Period size: 39 Copynumber: 6.6 Consensus size: 39
16136761 TTGAATGATG
*
16136771 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
16136809 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
16136850 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
16136889 TCCGGGCTAAG-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
16136927 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
*
16136966 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
16137005 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
16137032 AACGAGGAGC
Statistics
Matches: 198, Mismatches: 16, Indels: 15
0.86 0.07 0.07
Matches are distributed among these distances:
38 38 0.19
39 91 0.46
40 57 0.29
41 11 0.06
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:16136917 original size:77 final size:78
Alignment explanation
Indices: 16136771--16137031 Score: 311
Period size: 77 Copynumber: 3.3 Consensus size: 78
16136761 TTGAATGATG
* * *
16136771 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-ATCCGGGCTAAG-CCCGAAGGCA
16136832 TTTGTGCGAGATACTAAT
61 TTTGTGCGAGATACTAAT
* *
16136850 TCTGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGT
16136914 GCGAGATACTAAT
66 GCGAGATACTAAT
* *
16136927 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTG
16136992 TGCGA-ATTACT-AT
65 TGCGAGA-TACTAAT
* *
16137005 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
16137032 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
77 73 0.45
78 12 0.07
79 53 0.33
80 24 0.15
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGT
GCGAGATACTAAT
Found at i:16137053 original size:79 final size:79
Alignment explanation
Indices: 16136823--16137064 Score: 255
Period size: 77 Copynumber: 3.1 Consensus size: 79
16136813 GGACTAAGAT
* * **
16136823 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGAT-ACTA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TGACTA
* * *
16136887 ATTCCGGGCT-AA-G
65 AATCCGGGTTAAATC
* ** *
16136900 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
16136965 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
16136979 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
16137041 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
16137058 CCGAAGG
1 CCGAAGG
16137065 TACGTGATTT
Statistics
Matches: 145, Mismatches: 13, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
76 1 0.01
77 69 0.48
78 4 0.03
79 46 0.32
80 25 0.17
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:16141786 original size:467 final size:467
Alignment explanation
Indices: 16140914--16142164 Score: 2355
Period size: 467 Copynumber: 2.7 Consensus size: 467
16140904 CAATAGCTGA
*
16140914 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAATATATAGGCTGGAAACCTGACGGG
1 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
*
16140979 TTGCCTTATATCGAGCTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
66 TTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
*
16141044 AATCTTAAAAAATCAAGAAGAATTGAAAAAAGTTCCATCGCTATTGAATATTTATATAACCTTAA
131 AATCTTAAAAATTCAAGAAGAATTGAAAAAAGTTCCATCGCTATTGAATATTTATATAACCTTAA
16141109 TTTATTTCCAATTTACTTAT-AAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATT
196 TTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATT
16141173 ACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGTT
261 ACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGTT
*
16141238 ATAAATATTTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATGAACAAGTTT
326 ATAAATAATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATGAACAAGTTT
*
16141303 TTATATTTTGGTTCAACTTAATTATTA-TTTGATTCAACTTAAGTATGAATTAATTTTATTACCA
391 TTATATTTTCGTTCAACTTAATTATTATTTTGATTCAACTTAAGTATGAATTAATTTTATTACCA
16141367 TATATGTAGCTT
456 TATATGTAGCTT
*
16141379 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACTTGACGGG
1 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
*
16141444 TTGCCTTATATCGAGTTGCAAGATATAATAGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
66 TTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
16141509 AATCTTAAAAATTCAAGAAGAATTGAAAAAAAGTTCCATCGCTATTGAATATTTATATAACCTTA
131 AATCTTAAAAATTCAAGAAGAATTG-AAAAAAGTTCCATCGCTATTGAATATTTATATAACCTTA
16141574 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
195 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
16141639 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGT
260 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGT
*
16141704 TATAAATAATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATGAATAAGTT
325 TATAAATAATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATGAACAAGTT
16141769 TTTATATTTTCGTTCAACTTAATTATTATTTTGATTCAACTTAAGTATGAATTAATTTTATTACC
390 TTTATATTTTCGTTCAACTTAATTATTATTTTGATTCAACTTAAGTATGAATTAATTTTATTACC
16141834 ATATATGTAGCTT
455 ATATATGTAGCTT
*
16141847 GCTTGTCCATTCCTTATTTTAAGTATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
1 GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
16141912 TTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
66 TTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
**
16141977 AATCTTAAAAAATTCAAGAAGAATTG-AAAAAGTTTTATCGCTATTGAATATTTATATAACCTTA
131 AATCTT-AAAAATTCAAGAAGAATTGAAAAAAGTTCCATCGCTATTGAATATTTATATAACCTTA
16142041 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
195 ATTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAAT
*
16142106 TACTATTTTGTTATATTAATAATGTGTGATTTTAATATTTAATATTTTTAAATGTCTTT
260 TACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTT
16142165 GTATAAAAAA
Statistics
Matches: 768, Mismatches: 14, Indels: 6
0.97 0.02 0.01
Matches are distributed among these distances:
465 150 0.20
466 60 0.08
467 357 0.46
468 182 0.24
469 19 0.02
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.42
Consensus pattern (467 bp):
GCTTGTCCATTCCTTATTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACGGG
TTGCCTTATATCGAGTTGCAAGATATAATGGATCCTCCCTAGGTGTAACAACGCCACGTATGATG
AATCTTAAAAATTCAAGAAGAATTGAAAAAAGTTCCATCGCTATTGAATATTTATATAACCTTAA
TTTATTTCCAATTTACTTATAAAAATTAAACTACGATTCTTTCTTGATATTATTATATTCAAATT
ACTATTTTGTTATATTAATAATGTTTGATTTTAATATTTAATATTTTTAAATGTCTTTAAAAGTT
ATAAATAATTTTTATCAAAATAGTATTAATTATTATTTGAAGTATGAATAAGTATGAACAAGTTT
TTATATTTTCGTTCAACTTAATTATTATTTTGATTCAACTTAAGTATGAATTAATTTTATTACCA
TATATGTAGCTT
Found at i:16146519 original size:21 final size:21
Alignment explanation
Indices: 16146492--16146552 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
16146482 TATAATGAGT
16146492 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
16146513 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
16146534 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
16146553 ATAACAATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:16146551 original size:10 final size:10
Alignment explanation
Indices: 16146492--16146552 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
16146482 TATAATGAGT
16146492 ATATCATAG-C
1 ATATCAT-GTC
16146502 ATATCATGTGC
1 ATATCATGT-C
* **
16146513 ATCTCATAAC
1 ATATCATGTC
16146523 ATATCATGTGC
1 ATATCATGT-C
16146534 ATATCATGTC
1 ATATCATGTC
16146544 ATATCATGT
1 ATATCATGT
16146553 ATAACAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:16147144 original size:258 final size:258
Alignment explanation
Indices: 16146687--16147203 Score: 1007
Period size: 258 Copynumber: 2.0 Consensus size: 258
16146677 CAAATATCAA
16146687 GGTTTTCTATGTTCATTAACAATTATCAATATTTCTGAGTGTTTAAACAATGATCTTTAACCCAC
1 GGTTTTCTATGTTCATTAACAATTATCAATATTTCTGAGTGTTTAAACAATGATCTTTAACCCAC
*
16146752 TTTATCAAATTCGGCCTTTTGGGCCCAAATCCCTTAATGGGCCCTACGAATGCCGATTTAGCCCA
66 TTTATCAAATTCGACCTTTTGGGCCCAAATCCCTTAATGGGCCCTACGAATGCCGATTTAGCCCA
16146817 TTAAGCCCACTTAACCCAAATTTTACAACAGTACTAACCATGTTAACATGCAATATTTCCAAATT
131 TTAAGCCCACTTAACCCAAATTTTACAACAGTACTAACCATGTTAACATGCAATATTTCCAAATT
*
16146882 CCATTTTCTATCAATTTTAGACAAATGTGCTCGAAAGCCCATTGGTCTAAATTCCAGCCCATT
196 CCATTTTCTATCAATTTTAGACAAATGTGCCCGAAAGCCCATTGGTCTAAATTCCAGCCCATT
16146945 GGTTTTCTATGTTCATTAACAATTATCAATATTTCTGAGTGTTTAAACAATGATCTTTAACCCAC
1 GGTTTTCTATGTTCATTAACAATTATCAATATTTCTGAGTGTTTAAACAATGATCTTTAACCCAC
16147010 TTTATCAAATTCGACCTTTTGGGCCCAAATCCCTTAATGGGCCCTACGAATGCCGATTTAGCCCA
66 TTTATCAAATTCGACCTTTTGGGCCCAAATCCCTTAATGGGCCCTACGAATGCCGATTTAGCCCA
*
16147075 TTAAGCCCACTTAACCCAAATTTTACAACAGTACTAACCGTGTTAACATGCAATATTTCCAAATT
131 TTAAGCCCACTTAACCCAAATTTTACAACAGTACTAACCATGTTAACATGCAATATTTCCAAATT
16147140 CCATTTTCTATCAATTTTAGACAAATGTGCCCGAAAGCCCATTGGTCTAAATTCCAGCCCATT
196 CCATTTTCTATCAATTTTAGACAAATGTGCCCGAAAGCCCATTGGTCTAAATTCCAGCCCATT
16147203 G
1 G
16147204 AGGCCCAACT
Statistics
Matches: 256, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
258 256 1.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.33
Consensus pattern (258 bp):
GGTTTTCTATGTTCATTAACAATTATCAATATTTCTGAGTGTTTAAACAATGATCTTTAACCCAC
TTTATCAAATTCGACCTTTTGGGCCCAAATCCCTTAATGGGCCCTACGAATGCCGATTTAGCCCA
TTAAGCCCACTTAACCCAAATTTTACAACAGTACTAACCATGTTAACATGCAATATTTCCAAATT
CCATTTTCTATCAATTTTAGACAAATGTGCCCGAAAGCCCATTGGTCTAAATTCCAGCCCATT
Found at i:16147634 original size:27 final size:27
Alignment explanation
Indices: 16147560--16147626 Score: 98
Period size: 27 Copynumber: 2.5 Consensus size: 27
16147550 GGGGTATTAT
**
16147560 GGTCACTTTACCCAACAGGGGCTTTAC
1 GGTCACTTTACCTTACAGGGGCTTTAC
16147587 GGTCACTTTACCTTACAGGGGCTTTAC
1 GGTCACTTTACCTTACAGGGGCTTTAC
**
16147614 GGTCTTTTTACCT
1 GGTCACTTTACCT
16147627 ATTAGGGGTA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (27 bp):
GGTCACTTTACCTTACAGGGGCTTTAC
Found at i:16147709 original size:27 final size:27
Alignment explanation
Indices: 16147679--16147776 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
16147669 GTAAATCTAC
16147679 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
16147706 AAACCAATGGTATTTCTA-TAA-TTTGT
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* * *
16147732 AGAAAGTCAAGCGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* *
16147762 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
16147777 TGATAATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
26 5 0.09
27 28 0.48
28 7 0.12
29 13 0.22
30 5 0.09
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:16147783 original size:27 final size:27
Alignment explanation
Indices: 16147744--16147865 Score: 108
Period size: 27 Copynumber: 4.5 Consensus size: 27
16147734 AAAGTCAAGC
**
16147744 GTATTTCTG-TAATTTTGTAAATCAGGG
1 GTATTT-TGATAATTTTACAAATCAGGG
*
16147771 GTATTTTGATAATTTTACAAAT-TGAGG
1 GTATTTTGATAATTTTACAAATCAG-GG
* * *
16147798 GTATTTT-AGTAATTTCACAAACCAGTG
1 GTATTTTGA-TAATTTTACAAATCAGGG
*
16147825 GTATTTTGGTAATTTTACAAA-CTAGGG
1 GTATTTTGATAATTTTACAAATC-AGGG
*
16147852 GTATTTTGGTAATT
1 GTATTTTGATAATT
16147866 CTACCCTACA
Statistics
Matches: 79, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
26 5 0.06
27 73 0.92
28 1 0.01
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (27 bp):
GTATTTTGATAATTTTACAAATCAGGG
Found at i:16147884 original size:27 final size:27
Alignment explanation
Indices: 16147767--16147869 Score: 111
Period size: 27 Copynumber: 3.8 Consensus size: 27
16147757 TTTGTAAATC
* *
16147767 AGGGGTATTTTGATAATTTTACAAA-T
1 AGGGGTATTTTGGTAATTCTACAAACT
* * *
16147793 TGAGGGTATTTTAGTAATT-TCACAAACC
1 AG-GGGTATTTTGGTAATTCT-ACAAACT
* *
16147821 AGTGGTATTTTGGTAATTTTACAAACT
1 AGGGGTATTTTGGTAATTCTACAAACT
16147848 AGGGGTATTTTGGTAATTCTAC
1 AGGGGTATTTTGGTAATTCTAC
16147870 CCTACAGGGG
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.03
27 59 0.94
28 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTTGGTAATTCTACAAACT
Found at i:16147905 original size:27 final size:26
Alignment explanation
Indices: 16147763--16147905 Score: 94
Period size: 27 Copynumber: 5.3 Consensus size: 26
16147753 TAATTTTGTA
*
16147763 AATCAGGGGTATTTT-GATAATTTTAC
1 AATCAGGGGTATTTTAG-TAATTTCAC
*
16147789 AAAT-TGAGGGTATTTTAGTAATTTCAC
1 -AATCAG-GGGTATTTTAGTAATTTCAC
* * * *
16147816 AAACCAGTGGTATTTTGGTAATTTTAC
1 -AATCAGGGGTATTTTAGTAATTTCAC
* *
16147843 AAACTAGGGGTATTTTGGTAA-TTCTAC
1 AATC-AGGGGTATTTTAGTAATTTC-AC
** *
16147870 CCTACAGGGGTATTTAAGTAATTTCAC
1 AAT-CAGGGGTATTTTAGTAATTTCAC
16147897 AATCGAGGG
1 AATC-AGGG
16147906 TAAAATGATA
Statistics
Matches: 91, Mismatches: 17, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
26 7 0.08
27 78 0.86
28 6 0.07
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (26 bp):
AATCAGGGGTATTTTAGTAATTTCAC
Found at i:16148053 original size:27 final size:27
Alignment explanation
Indices: 16147897--16148042 Score: 213
Period size: 27 Copynumber: 5.4 Consensus size: 27
16147887 GTAATTTCAC
* *
16147897 AATCGAGGGTAAAAT-GATAATTTTGTA
1 AATCGAGGGTAAAATAG-TAATTCTATA
16147924 AATCGAGGGTAAAATAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
*
16147951 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTCTATA
*
16147978 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
* **
16148005 AATTGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATAGTAATTCTATA
16148032 AATCGAGGGTA
1 AATCGAGGGTA
16148043 CTTTGGTAAT
Statistics
Matches: 110, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
27 109 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATAGTAATTCTATA
Found at i:16148065 original size:81 final size:80
Alignment explanation
Indices: 16147886--16148067 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 80
16147876 GGGGTATTTA
* * * * *
16147886 AGTAATTTCACAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTAAAATAGTAATTCTATA
1 AGTAATTTTACAATCGAGGGTAAAAAGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
16147951 AATCGAGGGTAAAAT
66 AATCGAGGGTAAAAT
* *
16147966 AGTAATTCTGTA-AATCGAGGGTAAAACAG-TAATTCTATAAATTGAGGGTAAAACGGTAATTCT
1 AGTAATT-T-TACAATCGAGGGTAAAA-AGATAATTCTATAAATCGAGGGTAAAACAGTAATTCT
***
16148029 ATAAATCGAGGGTACTTT
63 ATAAATCGAGGGTAAAAT
*
16148047 GGTAATTTTACAAGTCGAGGG
1 AGTAATTTTACAA-TCGAGGG
16148068 CATTTCAGTA
Statistics
Matches: 86, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
79 2 0.02
80 10 0.12
81 72 0.84
82 2 0.02
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (80 bp):
AGTAATTTTACAATCGAGGGTAAAAAGATAATTCTATAAATCGAGGGTAAAACAGTAATTCTATA
AATCGAGGGTAAAAT
Found at i:16150467 original size:21 final size:21
Alignment explanation
Indices: 16150440--16150500 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
16150430 TATAATGAGT
16150440 ATATCATAGCATATCATGTGC
1 ATATCATAGCATATCATGTGC
* *
16150461 ATCTCATAACATATCATGTGC
1 ATATCATAGCATATCATGTGC
16150482 ATATCAT-GTCATATCATGT
1 ATATCATAG-CATATCATGT
16150501 ATACAATATC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (21 bp):
ATATCATAGCATATCATGTGC
Found at i:16150499 original size:10 final size:10
Alignment explanation
Indices: 16150440--16150500 Score: 61
Period size: 10 Copynumber: 5.9 Consensus size: 10
16150430 TATAATGAGT
16150440 ATATCATAG-C
1 ATATCAT-GTC
16150450 ATATCATGTGC
1 ATATCATGT-C
* **
16150461 ATCTCATAAC
1 ATATCATGTC
16150471 ATATCATGTGC
1 ATATCATGT-C
16150482 ATATCATGTC
1 ATATCATGTC
16150492 ATATCATGT
1 ATATCATGT
16150501 ATACAATATC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
9 1 0.02
10 24 0.57
11 17 0.40
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (10 bp):
ATATCATGTC
Found at i:16151236 original size:27 final size:28
Alignment explanation
Indices: 16151198--16151276 Score: 94
Period size: 27 Copynumber: 2.9 Consensus size: 28
16151188 TATTCGACAT
*
16151198 TTTA-CCATACAGGGG-TATTATGGTCAC
1 TTTACCCATACAGGGGCT-TTACGGTCAC
16151225 TTTACCCA-ACAGGGGCTTTACGGTCAC
1 TTTACCCATACAGGGGCTTTACGGTCAC
* *
16151252 TTTA-CCTTGCAGGGGCTTTACGGTC
1 TTTACCCATACAGGGGCTTTACGGTC
16151277 TTTTTACCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.04
27 40 0.87
28 4 0.09
ACGTcount: A:0.20, C:0.24, G:0.24, T:0.32
Consensus pattern (28 bp):
TTTACCCATACAGGGGCTTTACGGTCAC
Found at i:16151293 original size:27 final size:27
Alignment explanation
Indices: 16151219--16151285 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
16151209 GGGGTATTAT
***
16151219 GGTCACTTTACCCAACAGGGGCTTTAC
1 GGTCACTTTACCTTGCAGGGGCTTTAC
16151246 GGTCACTTTACCTTGCAGGGGCTTTAC
1 GGTCACTTTACCTTGCAGGGGCTTTAC
**
16151273 GGTCTTTTTACCT
1 GGTCACTTTACCT
16151286 ATTAGGGGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.16, C:0.27, G:0.22, T:0.34
Consensus pattern (27 bp):
GGTCACTTTACCTTGCAGGGGCTTTAC
Found at i:16151368 original size:27 final size:27
Alignment explanation
Indices: 16151342--16151469 Score: 109
Period size: 27 Copynumber: 4.7 Consensus size: 27
16151332 ATCTACAAAC
*
16151342 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTGTAAAT
*
16151369 CAATGGTATTTCTA-TAATTTT-TAGAAAGT
1 CAAGGGTATTTC-AGTAATTTTGT--AAA-T
* *
16151398 CAAGCGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
** **
16151425 C-AGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTCAGTAATTTTGTAAAT
**
16151451 TGAGGGTATTTCAGTAATT
1 CAAGGGTATTTCAGTAATT
16151470 CACAAACAGT
Statistics
Matches: 81, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
26 21 0.26
27 35 0.43
28 7 0.09
29 17 0.21
30 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTGTAAAT
Found at i:16151440 original size:26 final size:25
Alignment explanation
Indices: 16151403--16151562 Score: 108
Period size: 26 Copynumber: 6.1 Consensus size: 25
16151393 AAAGTCAAGC
**
16151403 GTATTTCT-GTAATTTTGTAAATCAGG
1 GTATTT-TGGTAATTTTACAAA-CAGG
*
16151429 GTATTTTGGTAATTTTACAAATTGAGG
1 GTATTTTGGTAATTTTACAAA--CAGG
** *
16151456 GTATTTCAGTAA-TTCACAAACAGTG
1 GTATTTTGGTAATTTTACAAACAG-G
16151481 GTATTTTGGTAATTTTACAAACTAGGG
1 GTATTTTGGTAATTTTACAAAC-A-GG
* **
16151508 GTATTTTGGTAATTCTACCTACAGGG
1 GTATTTTGGTAATTTTACAAACA-GG
** * *
16151534 GTATTTCAGTAATTTCACAATCGAGG
1 GTATTTTGGTAATTTTACAAAC-AGG
16151560 GTA
1 GTA
16151563 AAACAATAAT
Statistics
Matches: 107, Mismatches: 20, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
24 2 0.02
25 12 0.11
26 56 0.52
27 36 0.34
28 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (25 bp):
GTATTTTGGTAATTTTACAAACAGG
Found at i:16151492 original size:52 final size:53
Alignment explanation
Indices: 16151427--16151562 Score: 152
Period size: 52 Copynumber: 2.6 Consensus size: 53
16151417 TTGTAAATCA
16151427 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTC-ACAAACAG
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTCTACAAACAG
* * ** **
16151479 TGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTCTACCTACAG
1 GGGTATTTTGGTAATTTTACAAATTGA-GGGTATTTCAGTAATTCTACAAACAG
** * *
16151532 GGGTATTTCAGTAATTTCAC-AATCGAGGGTA
1 GGGTATTTTGGTAATTTTACAAATTGAGGGTA
16151563 AAACAATAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
51 1 0.01
52 45 0.65
53 23 0.33
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTCTACAAACAG
Found at i:16151512 original size:27 final size:26
Alignment explanation
Indices: 16151427--16151553 Score: 121
Period size: 26 Copynumber: 4.8 Consensus size: 26
16151417 TTGTAAATCA
**
16151427 GGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTTTGGTAATTTTACAAACAG
** *
16151453 AGGGTATTTCAGTAA-TTCACAAACAG
1 -GGGTATTTTGGTAATTTTACAAACAG
*
16151479 TGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
* **
16151506 GGGTATTTTGGTAATTCTACCTACAG
1 GGGTATTTTGGTAATTTTACAAACAG
** *
16151532 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
16151554 TCGAGGGTAA
Statistics
Matches: 79, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
25 11 0.14
26 34 0.43
27 34 0.43
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:16151582 original size:27 final size:27
Alignment explanation
Indices: 16151552--16151694 Score: 173
Period size: 27 Copynumber: 5.3 Consensus size: 27
16151542 GTAATTTCAC
* *
16151552 AATCGAGGGTAAAACAATAATTCTGTA
1 AATCGAGGGTAAAACAGTAATTCTATA
*
16151579 AATCGAGGGTAAAACAGTAAATTCAATA
1 AATCGAGGGTAAAACAGT-AATTCTATA
*
16151607 AATCGA-GGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* * *
16151633 AATCGATGGTAAAGCAGTACTTCTATA
1 AATCGAGGGTAAAACAGTAATTCTATA
* *
16151660 AATCGAAGGTAAAAC-GATTATTCTATA
1 AATCGAGGGTAAAACAG-TAATTCTATA
16151687 AATCGAGG
1 AATCGAGG
16151695 TACTTTGTAT
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
26 15 0.15
27 72 0.72
28 13 0.13
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (27 bp):
AATCGAGGGTAAAACAGTAATTCTATA
Found at i:16174621 original size:40 final size:40
Alignment explanation
Indices: 16174543--16174726 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
16174533 ACCCAAGTAT
* *
16174543 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
16174582 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
16174622 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
16174662 CTTCGGGACTTAGCCCGGGA-ATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCC-GGATATAGTC-ACTA---GCACAAATGC
* *
16174705 CTTCGGGACTTAACCCGAATAT
1 CTTCGGGACTTAGCCCGGATAT
16174727 CATCCGAATA
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
39 12 0.09
40 82 0.65
41 4 0.03
42 2 0.02
43 27 0.21
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:16182781 original size:40 final size:40
Alignment explanation
Indices: 16182718--16182901 Score: 246
Period size: 40 Copynumber: 4.5 Consensus size: 40
16182708 ACCCAAGTAT
* * *
16182718 CTTCGAGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
* * **
16182757 CTTCGGGTCTTAGCCCGGATATAGCCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
16182797 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGC
*
16182837 CTTCGGGACTTAGCCCGGGTATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGCAACTA---GCACAAATGC
16182880 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
16182902 CATCCGAATA
Statistics
Matches: 127, Mismatches: 12, Indels: 8
0.86 0.08 0.05
Matches are distributed among these distances:
39 11 0.09
40 84 0.66
41 1 0.01
43 31 0.24
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:16186391 original size:21 final size:21
Alignment explanation
Indices: 16186366--16186408 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
16186356 TTATCTTTTA
16186366 GTCATTCCACACCAATTTCAT
1 GTCATTCCACACCAATTTCAT
16186387 GTCATTCCACACCAATTTCAT
1 GTCATTCCACACCAATTTCAT
16186408 G
1 G
16186409 GTTTACCATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.33
Consensus pattern (21 bp):
GTCATTCCACACCAATTTCAT
Found at i:16189934 original size:87 final size:87
Alignment explanation
Indices: 16189788--16189959 Score: 335
Period size: 87 Copynumber: 2.0 Consensus size: 87
16189778 ATCTAACATT
16189788 AAAATATTTACTTTATGATTATTATGAGGCCTAGAATATGAGTATATACATGTGTTAAAATTTCA
1 AAAATATTTACTTTATGATTATTATGAGGCCTAGAATATGAGTATATACATGTGTTAAAATTTCA
*
16189853 TGAAGAAATTTTTCGAGTAATC
66 TGAAGAAATTCTTCGAGTAATC
16189875 AAAATATTTACTTTATGATTATTATGAGGCCTAGAATATGAGTATATACATGTGTTAAAATTTCA
1 AAAATATTTACTTTATGATTATTATGAGGCCTAGAATATGAGTATATACATGTGTTAAAATTTCA
16189940 TGAAGAAATTCTTCGAGTAA
66 TGAAGAAATTCTTCGAGTAA
16189960 CGTGTAAAAT
Statistics
Matches: 84, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (87 bp):
AAAATATTTACTTTATGATTATTATGAGGCCTAGAATATGAGTATATACATGTGTTAAAATTTCA
TGAAGAAATTCTTCGAGTAATC
Found at i:16200616 original size:9 final size:9
Alignment explanation
Indices: 16200602--16200635 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
16200592 ATTGGATTTC
16200602 AAATTTACA
1 AAATTTACA
16200611 AAATTTACAA
1 AAATTTAC-A
16200621 AAATTTACA
1 AAATTTACA
*
16200630 GAATTT
1 AAATTT
16200636 TTAACCGACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.53, C:0.09, G:0.03, T:0.35
Consensus pattern (9 bp):
AAATTTACA
Found at i:16203850 original size:27 final size:27
Alignment explanation
Indices: 16203820--16203997 Score: 214
Period size: 27 Copynumber: 6.6 Consensus size: 27
16203810 ATATCGAGTC
* * * *
16203820 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
16203847 CGCACACTTAGTGCTACATAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16203874 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
16203902 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16203929 CGCACACTTAGTGC-ATCATACTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16203956 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16203983 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16203998 GTACAATTTA
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
27 108 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16203959 original size:82 final size:81
Alignment explanation
Indices: 16203841--16203996 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
16203831 TGCTATATAA
*
16203841 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
16203906 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
16203923 TCAATTCGCACACTTAGTGC-ATCATACTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
16203987 CACTTAGTGC
65 CACTTAGTGC
16203997 TGTACAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.24
82 52 0.76
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16212167 original size:108 final size:108
Alignment explanation
Indices: 16211978--16212192 Score: 421
Period size: 108 Copynumber: 2.0 Consensus size: 108
16211968 ATGCTCTCTA
16211978 CATTTCTACCTATATTTCATGCTAGGGTTCATGTTTAAAAATTTACCCATGCATGAGTTGCTTTT
1 CATTTCTACCTATATTTCATGCTAGGGTTCATGTTTAAAAATTTACCCATGCATGAGTTGCTTTT
*
16212043 ATTTTGATGTATTATGGAGGAATATGAAAGATGACTGTGTATC
66 ATTTTGATGTATTATGGAGGAATATGAAAGATGAATGTGTATC
16212086 CATTTCTACCTATATTTCATGCTAGGGTTCATGTTTAAAAATTTACCCATGCATGAGTTGCTTTT
1 CATTTCTACCTATATTTCATGCTAGGGTTCATGTTTAAAAATTTACCCATGCATGAGTTGCTTTT
16212151 ATTTTGATGTATTATGGAGGAATATGAAAGATGAATGTGTAT
66 ATTTTGATGTATTATGGAGGAATATGAAAGATGAATGTGTAT
16212193 TTTGCAAAAG
Statistics
Matches: 106, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 106 1.00
ACGTcount: A:0.28, C:0.12, G:0.19, T:0.41
Consensus pattern (108 bp):
CATTTCTACCTATATTTCATGCTAGGGTTCATGTTTAAAAATTTACCCATGCATGAGTTGCTTTT
ATTTTGATGTATTATGGAGGAATATGAAAGATGAATGTGTATC
Found at i:16216504 original size:17 final size:17
Alignment explanation
Indices: 16216484--16216517 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
16216474 TGGTCTTGAT
16216484 TTTTTTTTTGTTTTTAA
1 TTTTTTTTTGTTTTTAA
16216501 TTTTTTTTTGTTTTTAA
1 TTTTTTTTTGTTTTTAA
16216518 ATATTTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (17 bp):
TTTTTTTTTGTTTTTAA
Found at i:16216524 original size:18 final size:17
Alignment explanation
Indices: 16216486--16216524 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
16216476 GTCTTGATTT
*
16216486 TTTTTTTGTTTTTAATT
1 TTTTTTTGTTTTTAATA
16216503 TTTTTTTGTTTTTAAATA
1 TTTTTTTGTTTTT-AATA
16216521 TTTT
1 TTTT
16216525 AAACTTAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.15, C:0.00, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTTTTGTTTTTAATA
Found at i:16219192 original size:21 final size:21
Alignment explanation
Indices: 16219167--16219206 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
16219157 TTAGTGGTTG
*
16219167 AATTCTGATTAGTTGGATTTC
1 AATTCTGATTAGTTAGATTTC
*
16219188 AATTCTGTTTAGTTAGATT
1 AATTCTGATTAGTTAGATT
16219207 GGACCTGACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.25, C:0.07, G:0.17, T:0.50
Consensus pattern (21 bp):
AATTCTGATTAGTTAGATTTC
Found at i:16220662 original size:22 final size:21
Alignment explanation
Indices: 16220637--16220691 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
16220627 TACAGGGCTC
**
16220637 ACACGCCCGTGTGGTCCAAGGG
1 ACACGCCCGTGTGACCCAA-GG
* * *
16220659 ACACTCCCGTCTGACCCTAGG
1 ACACGCCCGTGTGACCCAAGG
16220680 ACACGCCCGTGT
1 ACACGCCCGTGT
16220692 TGGAGTCTGT
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 12 0.46
22 14 0.54
ACGTcount: A:0.18, C:0.38, G:0.27, T:0.16
Consensus pattern (21 bp):
ACACGCCCGTGTGACCCAAGG
Found at i:16230391 original size:40 final size:40
Alignment explanation
Indices: 16230200--16230384 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
16230190 TCGAATGATG
* * * *
16230200 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
16230240 TCCGGACTAAGAT-CCGAAGGCATTGGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
16230280 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
16230319 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
16230360 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
16230385 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 35 0.28
40 81 0.65
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:16234454 original size:20 final size:20
Alignment explanation
Indices: 16234429--16234467 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
16234419 AATATTCAAA
16234429 ATACCATAATCACAA-CCAAG
1 ATACCATAA-CACAAGCCAAG
16234449 ATACCATAACACAAGCCAA
1 ATACCATAACACAAGCCAA
16234468 ATCATATGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.51, C:0.31, G:0.05, T:0.13
Consensus pattern (20 bp):
ATACCATAACACAAGCCAAG
Found at i:16248120 original size:40 final size:40
Alignment explanation
Indices: 16248022--16248284 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
16248012 TCCTCGTTCA
* * * * *
16248022 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
16248061 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
16248101 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
16248141 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * *
16248181 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGTACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
16248221 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
16248261 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
16248285 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 154 0.78
41 7 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:16256069 original size:40 final size:40
Alignment explanation
Indices: 16255971--16256232 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
16255961 TCCTCGTTCA
* * * * *
16255971 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
16256010 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
16256050 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
16256090 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCG-ACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
16256129 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
16256169 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
16256209 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
16256233 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 74 0.37
40 116 0.59
41 8 0.04
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:16256165 original size:119 final size:119
Alignment explanation
Indices: 16255971--16256232 Score: 323
Period size: 119 Copynumber: 2.2 Consensus size: 119
16255961 TCCTCGTTCA
* * *
16255971 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
* * * *
16256036 TAACAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
66 TAACAACTCGCACAAAGGCCTTC-GGATCTTAACCCGGATATAATAACTTAGCAC
* * *
16256089 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGAC-GAATGCCTTCGGGACTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAATAACTC-ACACAATGCCTTCGGGACATAACCCGGA
** * * * *
16256153 TTTAGTATCTCGCACAAAGGCCTTCGGATCTTAATCCGGATATATTCACTTAGCAC
64 TTTAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
*
16256209 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
16256233 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
118 3 0.02
119 112 0.92
120 7 0.06
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAATAACTCACACAATGCCTTCGGGACATAACCCGGATT
TAACAACTCGCACAAAGGCCTTCGGATCTTAACCCGGATATAATAACTTAGCAC
Found at i:16256186 original size:79 final size:79
Alignment explanation
Indices: 16255971--16256232 Score: 316
Period size: 79 Copynumber: 3.3 Consensus size: 79
16255961 TCCTCGTTCA
* * * * *
16255971 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
16256036 TAACAACTCGCACG
66 TAACAACTCGCACG
*
16256050 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGAT
*
16256115 TTAATAACTCG-ACG
65 TTAACAACTCGCACG
* * *
16256129 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC-AATGCCTTCGGGA-CTTAACCCGGA
* * *
16256193 TATATTC-ACTTAGCAC-
64 TTTA-ACAAC-TCGCACG
* *
16256209 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
16256233 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 18, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
78 3 0.02
79 97 0.61
80 58 0.36
81 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGATT
TAACAACTCGCACG
Found at i:16265476 original size:38 final size:38
Alignment explanation
Indices: 16265402--16265476 Score: 105
Period size: 38 Copynumber: 2.0 Consensus size: 38
16265392 GATGTGATGA
* * *
16265402 ATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCG
1 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCG
* *
16265440 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCC
1 ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCC
16265477 AACGTGATGG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (38 bp):
ATGTGAAAGTGTATATATGTGACAAGGCCGAATGGCCG
Found at i:16265707 original size:37 final size:37
Alignment explanation
Indices: 16265631--16265709 Score: 90
Period size: 37 Copynumber: 2.1 Consensus size: 37
16265621 CCGAGCTCTA
* *
16265631 AAGACCCGATGACTATGTGTGGGAATTTTGTCCGAGT
1 AAGACCCGATAACTATGTGTGGGAATTATGTCCGAGT
* *
16265668 AAGACCCGATAACT-TCGTGT-GGAGATTATGTCTGGGT
1 AAGACCCGATAACTAT-GTGTGGGA-ATTATGTCCGAGT
16265705 AAGAC
1 AAGAC
16265710 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 4 0.11
37 32 0.89
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (37 bp):
AAGACCCGATAACTATGTGTGGGAATTATGTCCGAGT
Found at i:16274425 original size:21 final size:19
Alignment explanation
Indices: 16274394--16274436 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
16274384 CTTTCATTTC
*
16274394 TTAATTCTTTTGTTTTATT
1 TTAATTCTTTTCTTTTATT
*
16274413 TTAATTCCTTTTTCTTTTGTT
1 TTAATT-C-TTTTCTTTTATT
16274434 TTA
1 TTA
16274437 TTTTACTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 6 0.30
20 1 0.05
21 13 0.65
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.72
Consensus pattern (19 bp):
TTAATTCTTTTCTTTTATT
Found at i:16274451 original size:26 final size:26
Alignment explanation
Indices: 16274398--16274451 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
16274388 CATTTCTTAA
*
16274398 TTCTTTTGTTTTATTTTAATTCCTTT
1 TTCTTTTGTTTTATTTTAATTCCATT
* *
16274424 TTCTTTTGTTTTATTTTACTTTCATT
1 TTCTTTTGTTTTATTTTAATTCCATT
16274450 TT
1 TT
16274452 AATATAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.11, C:0.11, G:0.04, T:0.74
Consensus pattern (26 bp):
TTCTTTTGTTTTATTTTAATTCCATT
Found at i:16277287 original size:82 final size:81
Alignment explanation
Indices: 16277168--16277323 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
16277158 AAATTGTACA
* * * * *
16277168 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
16277232 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
16277249 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
16277314 TGCGAGTTGA
65 TGCGAATTGA
16277324 TTGTATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:16277307 original size:55 final size:54
Alignment explanation
Indices: 16277168--16277344 Score: 189
Period size: 54 Copynumber: 3.3 Consensus size: 54
16277158 AAATTGTACA
* * * *
16277168 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGATGAATATGAT
* * * *
16277222 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAT-GAATATGAT
* * *
16277276 GGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTG-AT-TGTAT
1 -GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGATGAATATG-AT
*
16277330 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
16277345 GGCTCAATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 54 0.53
55 45 0.44
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGATGAATATGAT
Found at i:16277325 original size:27 final size:27
Alignment explanation
Indices: 16277168--16277323 Score: 170
Period size: 27 Copynumber: 5.7 Consensus size: 27
16277158 AAATTGTACA
* * *
16277168 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
16277195 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
16277222 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
16277249 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
16277277 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
16277304 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
16277324 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:16277334 original size:27 final size:27
Alignment explanation
Indices: 16277168--16277344 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 27
16277158 AAATTGTACA
* * * *
16277168 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAGTTGATTATGTG
* ** *
16277195 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAGTTGATTATG-TG
* ** *
16277222 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATTATGTG
* *
16277249 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGAG-TTGATTATGTG
* *
16277277 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTATGTG
* * *
16277304 GCACTAAGTGTGCGAGTTGATTGTATA
1 GCACTAAGTGTGCGAGTTGATTATGTG
*
16277331 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
16277345 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTATGTG
Found at i:16277335 original size:82 final size:81
Alignment explanation
Indices: 16277160--16277344 Score: 192
Period size: 82 Copynumber: 2.3 Consensus size: 81
16277150 GCGGGATTAA
* * * * * *
16277160 ATTGTACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCA
16277225 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
16277241 ACCATGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-G
*
16277305 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
16277323 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
16277345 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 22, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
81 18 0.22
82 62 0.77
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:16280828 original size:29 final size:29
Alignment explanation
Indices: 16280776--16281169 Score: 326
Period size: 29 Copynumber: 13.5 Consensus size: 29
16280766 ACTGCGTATC
*
16280776 GACGATCATCGATTAATGAAAAGGGATGGT
1 GACGACCATCGATT-ATGAAAAGGGATGGT
*** *
16280806 TTTGACCATCGATTATGAAAAGGGATAGT
1 GACGACCATCGATTATGAAAAGGGATGGT
* * * *
16280835 -TCTGACTATCGACTATGAAAAGGGATGAT
1 GAC-GACCATCGATTATGAAAAGGGATGGT
* *
16280864 GACGACCATCAACTATGAAAAGGGATGGT
1 GACGACCATCGATTATGAAAAGGGATGGT
* * *
16280893 GACAACCATCAACTATGAAAAGGGATGGT
1 GACGACCATCGATTATGAAAAGGGATGGT
* * *
16280922 GACAACCATCAACTATGAAAAGGGATGGT
1 GACGACCATCGATTATGAAAAGGGATGGT
* *** *
16280951 GACAACCATCG-TATATGAAAATAAATAGT
1 GACGACCATCGAT-TATGAAAAGGGATGGT
** * * *
16280980 TTCAACTATCGATTATGAAAAGAGATGGT
1 GACGACCATCGATTATGAAAAGGGATGGT
* *
16281009 GACGACTATCGACTATGAAAAGGGATGGT
1 GACGACCATCGATTATGAAAAGGGATGGT
* * * *
16281038 GATGACTATCGAATATGGAAAGGGATGGT
1 GACGACCATCGATTATGAAAAGGGATGGT
* ** *
16281067 GACAACCATTAATTAATTAAAAGGGATGGT
1 GACGACCATCGATT-ATGAAAAGGGATGGT
*
16281097 GACGACCATCGATTAATGAAAAGGGATAGT
1 GACGACCATCGATT-ATGAAAAGGGATGGT
* * * *
16281127 GATGAACATCAAATATGAAAAGGGATGGT
1 GACGACCATCGATTATGAAAAGGGATGGT
**
16281156 TTCGACCATC-ATTA
1 GACGACCATCGATTA
16281170 GCACACTTCA
Statistics
Matches: 301, Mismatches: 58, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
28 4 0.01
29 237 0.79
30 60 0.20
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.24
Consensus pattern (29 bp):
GACGACCATCGATTATGAAAAGGGATGGT
Found at i:16280937 original size:87 final size:87
Alignment explanation
Indices: 16280776--16281155 Score: 361
Period size: 87 Copynumber: 4.3 Consensus size: 87
16280766 ACTGCGTATC
* * **** * * *
16280776 GACGATCATCGATTAATGAAAAGGGATGGTTTTGACCATCGATTATGAAAAGGGATAGT-TCTGA
1 GACGACCATCGAAT-ATGAAAAGGGATGGTGACAACCATCAATTATGAAAAGGGATGGTGAC-GA
*
16280840 CTATCGACTATGAAAAGGGATGAT
64 CCATCGACTATGAAAAGGGATGAT
* *
16280864 GACGACCATC-AACTATGAAAAGGGATGGTGACAACCATCAACTATGAAAAGGGATGGTGACAAC
1 GACGACCATCGAA-TATGAAAAGGGATGGTGACAACCATCAATTATGAAAAGGGATGGTGACGAC
* *
16280928 CATCAACTATGAAAAGGGATGGT
65 CATCGACTATGAAAAGGGATGAT
* * *** * ** * * * *
16280951 GACAACCATCGTATATGAAAATAAATAGTTTCAACTATCGATTATGAAAAGAGATGGTGACGACT
1 GACGACCATCGAATATGAAAAGGGATGGTGACAACCATCAATTATGAAAAGGGATGGTGACGACC
*
16281016 ATCGACTATGAAAAGGGATGGT
66 ATCGACTATGAAAAGGGATGAT
* * * * *
16281038 GATGACTATCGAATATGGAAAGGGATGGTGACAACCATTAATTAATTAAAAGGGATGGTGACGAC
1 GACGACCATCGAATATGAAAAGGGATGGTGACAACCATCAATT-ATGAAAAGGGATGGTGACGAC
*
16281103 CATCGATTAATGAAAAGGGAT-AGT
65 CATCGACT-ATGAAAAGGGATGA-T
* * *
16281127 GATGAACATCAAATATGAAAAGGGATGGT
1 GACGACCATCGAATATGAAAAGGGATGGT
16281156 TTCGACCATC
Statistics
Matches: 234, Mismatches: 52, Indels: 11
0.79 0.18 0.04
Matches are distributed among these distances:
87 159 0.68
88 37 0.16
89 38 0.16
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.23
Consensus pattern (87 bp):
GACGACCATCGAATATGAAAAGGGATGGTGACAACCATCAATTATGAAAAGGGATGGTGACGACC
ATCGACTATGAAAAGGGATGAT
Found at i:16283014 original size:34 final size:34
Alignment explanation
Indices: 16282971--16283035 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
16282961 AATAGTTAAT
* *
16282971 TTGGTTTATTTCCGCATTTAAAGAGCTTGTTATA
1 TTGGGTTATTTCCGCACTTAAAGAGCTTGTTATA
*
16283005 TTGGGTTATTTCTGCACTTAAAGAGCTTGTT
1 TTGGGTTATTTCCGCACTTAAAGAGCTTGTT
16283036 TTCTACGCAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.22, C:0.12, G:0.20, T:0.46
Consensus pattern (34 bp):
TTGGGTTATTTCCGCACTTAAAGAGCTTGTTATA
Found at i:16284183 original size:23 final size:24
Alignment explanation
Indices: 16284155--16284213 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
16284145 ATAATGACAA
*
16284155 TTGTAATAAAA-ATAT-TGGTACAT
1 TTGTAATAAAAGATATAT-GTACAC
16284178 TTGTAATAAATAGATATATGTACAC
1 TTGTAATAAA-AGATATATGTACAC
*
16284203 TTGTTATAAAA
1 TTGTAATAAAA
16284214 TAATTTATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
23 10 0.32
24 2 0.06
25 18 0.58
26 1 0.03
ACGTcount: A:0.44, C:0.05, G:0.12, T:0.39
Consensus pattern (24 bp):
TTGTAATAAAAGATATATGTACAC
Found at i:16287384 original size:46 final size:46
Alignment explanation
Indices: 16287334--16287509 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
16287324 TGGTTGAGCA
*
16287334 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
16287380 TCCGAACTCATTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
16287425 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
16287473 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
16287510 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 62 0.58
47 28 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:16287490 original size:93 final size:93
Alignment explanation
Indices: 16287331--16287501 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
16287321 GGATGGTTGA
* * *
16287331 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAATGTCCGAACTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
16287396 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* *
16287424 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
16287489 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
16287502 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:16289077 original size:18 final size:16
Alignment explanation
Indices: 16289054--16289093 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
16289044 AAATACTTTC
16289054 ATATATTAGTATCTTCAT
1 ATATATTAGTAT-TT-AT
*
16289072 ATATATTATTATTTAT
1 ATATATTAGTATTTAT
16289088 ATATAT
1 ATATAT
16289094 CATTAATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.38
17 2 0.10
18 11 0.52
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.55
Consensus pattern (16 bp):
ATATATTAGTATTTAT
Found at i:16289089 original size:16 final size:18
Alignment explanation
Indices: 16289054--16289098 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
16289044 AAATACTTTC
*
16289054 ATATATTAGTATCTTCAT
1 ATATATTATTATCTTCAT
16289072 ATATATTATTAT-TT-AT
1 ATATATTATTATCTTCAT
*
16289088 ATATATCATTA
1 ATATATTATTA
16289099 ATTAAATCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.48
17 2 0.08
18 11 0.44
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (18 bp):
ATATATTATTATCTTCAT
Found at i:16290694 original size:27 final size:27
Alignment explanation
Indices: 16290664--16291092 Score: 236
Period size: 27 Copynumber: 15.9 Consensus size: 27
16290654 AATATCCTAA
* *
16290664 ATTTGTAAAATTACCAAAGTACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* * ****
16290691 ATTTATAGAATTATCGTTTTACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* * ***
16290718 ATTTATAGAATTACTATTTTACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* * **** *
16290745 ATTTATAGAATTATCGTTTTACCTTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* ***
16290772 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* ***
16290799 ATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* * ***
16290826 ATTTACAGAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* ****
16290853 ATTTACAAAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
* * *
16290880 ATTTACAAAATTACCGAAATACCCTTG
1 ATTTATAAAATTACCAAAATACCCTCG
* *
16290907 GTTTACAAAATTACCAAAATACCCTCG
1 ATTTATAAAATTACCAAAATACCCTCG
*
16290934 A-TCAGTAAAATTACCAAAATACCC-CTG
1 ATTTA-TAAAATTACCAAAATACCCTC-G
* * * *
16290961 GTTTGTAAAATTACTAAAATACCCTTG
1 ATTTATAAAATTACCAAAATACCCTCG
* *
16290988 GTTTGTAAAATTACCAAAATACCC-CTG
1 ATTTATAAAATTACCAAAATACCCTC-G
** * * *
16291015 GCTTGTAAAATTACTAAAATACCCTTG
1 ATTTATAAAATTACCAAAATACCCTCG
*** * * *
16291042 ATTTGCGAAATTATCAAAATACTCTCA
1 ATTTATAAAATTACCAAAATACCCTCG
* *
16291069 ATTTGTAAAA-TATCAAAATACCCT
1 ATTTATAAAATTACCAAAATACCCT
16291093 TGTAGGTTAG
Statistics
Matches: 344, Mismatches: 52, Indels: 13
0.84 0.13 0.03
Matches are distributed among these distances:
26 16 0.05
27 327 0.95
28 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (27 bp):
ATTTATAAAATTACCAAAATACCCTCG
Found at i:16290904 original size:54 final size:54
Alignment explanation
Indices: 16290683--16290894 Score: 334
Period size: 54 Copynumber: 3.9 Consensus size: 54
16290673 ATTACCAAAG
* * *
16290683 TACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
* * *
16290737 TACCCTCGATTTATAGAATTATCGTTTTACCTTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
*
16290791 TACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
* * *
16290845 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACC
16290895 GAAATACCCT
Statistics
Matches: 148, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 148 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTACAGAATTACCATTT
Found at i:16290912 original size:54 final size:54
Alignment explanation
Indices: 16290664--16290974 Score: 270
Period size: 54 Copynumber: 5.8 Consensus size: 54
16290654 AATATCCTAA
* * *
16290664 ATTTGTAAAATTACCA-AAGTACCCTCGATTTATAGAATTATCGTTTTACCCTCG
1 ATTTATAAAATTACCATAA-TACCCTCGATTTATAAAATTACCGTTTTACCCTCG
* * ** * * *
16290718 ATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTATCGTTTTACCTTCG
1 ATTTATAAAATTACCATAATACCCTCGATTTATAAAATTACCGTTTTACCCTCG
* ** * *
16290772 ATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCG
1 ATTTATAAAATTACCATAATACCCTCGATTTATAAAATTACCGTTTTACCCTCG
* * ** *
16290826 ATTTACAGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCG
1 ATTTATAAAATTACCATAATACCCTCGATTTATAAAATTACCGTTTTACCCTCG
* * * * ****
16290880 ATTTACAAAATTACCGA-AATACCCTTGGTTTACAAAATTACCAAAATACCCTCG
1 ATTTATAAAATTACC-ATAATACCCTCGATTTATAAAATTACCGTTTTACCCTCG
* * * *
16290934 A-TCAGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTAC
1 ATTTA-TAAAATTACCATAATACCCTC-GATTTATAAAATTAC
16290975 TAAAATACCC
Statistics
Matches: 224, Mismatches: 28, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
53 3 0.01
54 220 0.98
55 1 0.00
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (54 bp):
ATTTATAAAATTACCATAATACCCTCGATTTATAAAATTACCGTTTTACCCTCG
Found at i:16290922 original size:81 final size:81
Alignment explanation
Indices: 16290683--16290894 Score: 325
Period size: 81 Copynumber: 2.6 Consensus size: 81
16290673 ATTACCAAAG
* *
16290683 TACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
* * *
16290748 TATAGAATTATCGTTT
66 TACAGAATTACCATTT
* *
16290764 TACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
16290829 TACAGAATTACCATTT
66 TACAGAATTACCATTT
* * * *
16290845 TACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACC
1 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACC
16290895 GAAATACCCT
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 118 1.00
ACGTcount: A:0.29, C:0.22, G:0.08, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATT
TACAGAATTACCATTT
Found at i:16290930 original size:81 final size:81
Alignment explanation
Indices: 16290670--16291011 Score: 267
Period size: 81 Copynumber: 4.2 Consensus size: 81
16290660 CTAAATTTGT
* * * * * *
16290670 AAAATTACCAAAGTACCCTCGATTTATAGAATTATCGTTTTACCCTCGATTTATAGAATTACTAT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACCAT
** *
16290735 TTTACCCTCGATTTAT
66 AATACCCTCGATTTAC
* * **** * * *
16290751 AGAATTATCGTTTTACCTTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCAT
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACCAT
**
16290816 TTTACCCTCGATTTAC
66 AATACCCTCGATTTAC
* *** * * *
16290832 AGAATTACCATTTTACCCTCGATTTACAAAATTACCGTTTTACCCTCGATTTACAAAATTACCGA
1 AAAATTACCAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACC-A
* *
16290897 -AATACCCTTGGTTTAC
65 TAATACCCTCGATTTAC
* *** * * *
16290913 AAAATTACCAAAATACCCTCGA-TCAGTAAAATTACCAAAATACCC-CTGGTTTGTAAAATTACT
1 AAAATTACCAAAATACCCTCGATTTA-TAAAATTACCATTTTACCCTC-GATTTATAAAATTACC
* * * **
16290976 AAAATACCCTTGGTTTGT
64 ATAATACCCTCGATTTAC
16290994 AAAATTACCAAAATACCC
1 AAAATTACCAAAATACCC
16291012 CTGGCTTGTA
Statistics
Matches: 218, Mismatches: 39, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
80 4 0.02
81 213 0.98
82 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.35
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCGATTTATAAAATTACCATTTTACCCTCGATTTATAAAATTACCAT
AATACCCTCGATTTAC
Found at i:16291125 original size:27 final size:27
Alignment explanation
Indices: 16291084--16291270 Score: 250
Period size: 27 Copynumber: 6.9 Consensus size: 27
16291074 TAAAATATCA
* *
16291084 AAATACCCTTGTAGGTTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
16291111 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
16291138 AAATACCCTTATAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
16291165 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
* *
16291192 AAATTCCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACTG
*
16291219 AAATACCCCTGTAGGGTAGAATTA-TC
1 AAATACCCCTGTAGGGTAGAATTACTG
* * *
16291245 AAGATACCCTTGTGGGGTAAAATTAC
1 AA-ATACCCCTGTAGGGTAGAATTAC
16291271 CATTTTGCCC
Statistics
Matches: 144, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
26 2 0.01
27 142 0.99
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACTG
Found at i:16291498 original size:24 final size:25
Alignment explanation
Indices: 16291422--16291491 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
16291412 ATGAAGTGCT
* * * *
16291422 AAAAGGGCTATGCTCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
16291447 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
16291472 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
16291492 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:16291504 original size:24 final size:24
Alignment explanation
Indices: 16291447--16291518 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
16291437 CAGTTTACCG
16291447 AAAAG-GGCTTTGCCCCAGTTTATC
1 AAAAGAGGCTTTGCCCCAG-TTATC
*
16291471 AAAA-AGGGCTTTGCCCCAGTTATT
1 AAAAGA-GGCTTTGCCCCAGTTATC
**
16291495 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAGAGGCTTTGCC-CCAGTTAT
16291519 ATGATAAAGC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
24 19 0.46
25 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.26
Consensus pattern (24 bp):
AAAAGAGGCTTTGCCCCAGTTATC
Found at i:16293988 original size:31 final size:31
Alignment explanation
Indices: 16293945--16294059 Score: 205
Period size: 31 Copynumber: 3.7 Consensus size: 31
16293935 TTAGTCTTGA
*
16293945 CATAT-ACTGGGCCGAAGCCTTTCCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
16293975 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
16294006 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
16294037 CATTTCACTGGGCCGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
16294060 ACTGTAAACG
Statistics
Matches: 82, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
30 5 0.06
31 77 0.94
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:16294166 original size:42 final size:42
Alignment explanation
Indices: 16294083--16294174 Score: 112
Period size: 42 Copynumber: 2.2 Consensus size: 42
16294073 TGGCCCATAG
* ** *
16294083 GCCCATTTCAATATCACAAGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACAAGAAATACCAATGAATGTATGCAA
* * * *
16294125 GCCCATTTCAATATCATATGAAATACCGATGAATGTTTGCAA
1 GCCCATTTCAATATCACAAGAAATACCAATGAATGTATGCAA
16294167 GCCCATTT
1 GCCCATTT
16294175 GGGGAGACTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (42 bp):
GCCCATTTCAATATCACAAGAAATACCAATGAATGTATGCAA
Found at i:16294391 original size:26 final size:26
Alignment explanation
Indices: 16294307--16294442 Score: 181
Period size: 26 Copynumber: 5.3 Consensus size: 26
16294297 CTGGAGGCCT
*
16294307 AGCCTCTTTT-AAT-AACTAGGGCA-A
1 AGCC-CTTTTCAATAAACTGGGGCATA
**
16294331 AGCCCTTTTCGGTAAACTGGGGCA-A
1 AGCCCTTTTCAATAAACTGGGGCATA
16294356 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
16294382 AGCCCTTTTCGGTAAATTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
16294408 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
16294434 AGCCCTTTT
1 AGCCCTTTT
16294443 GCACTTCCTC
Statistics
Matches: 98, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
23 5 0.05
24 5 0.05
25 32 0.33
26 56 0.57
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:16294430 original size:52 final size:51
Alignment explanation
Indices: 16294307--16294442 Score: 215
Period size: 52 Copynumber: 2.7 Consensus size: 51
16294297 CTGGAGGCCT
*
16294307 AGCCTCTTTT-AAT-AACTAGGGCA-AAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
*
16294356 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAATTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCA-A
16294408 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTT
16294443 GCACTTCCTC
Statistics
Matches: 81, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
48 5 0.06
49 7 0.09
50 9 0.11
51 24 0.30
52 36 0.44
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (51 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCAA
Found at i:16294518 original size:20 final size:20
Alignment explanation
Indices: 16294493--16294578 Score: 129
Period size: 20 Copynumber: 4.3 Consensus size: 20
16294483 TATGAATACG
*
16294493 TCATGTGCATTTCATTCATA
1 TCATGTGCATTTCATACATA
16294513 TCATGTGCATTTCATACATA
1 TCATGTGCATTTCATACATA
*
16294533 TCATGTGCATTTTATACATA
1 TCATGTGCATTTCATACATA
*
16294553 TCATGTGCATATCATATCA-A
1 TCATGTGCATTTCATA-CATA
16294573 TCATGT
1 TCATGT
16294579 ATATCATATC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
20 59 0.97
21 2 0.03
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (20 bp):
TCATGTGCATTTCATACATA
Found at i:16294565 original size:11 final size:11
Alignment explanation
Indices: 16294493--16294567 Score: 54
Period size: 11 Copynumber: 7.4 Consensus size: 11
16294483 TATGAATACG
*
16294493 TCATGTGCATT
1 TCATGTGCATA
16294504 TCAT-T-CATA
1 TCATGTGCATA
*
16294513 TCATGTGCATT
1 TCATGTGCATA
*
16294524 TCA--TACATA
1 TCATGTGCATA
16294533 TCATGTGCAT-
1 TCATGTGCATA
* * *
16294543 T-TTATACATA
1 TCATGTGCATA
16294553 TCATGTGCATA
1 TCATGTGCATA
16294564 TCAT
1 TCAT
16294568 ATCAATCATG
Statistics
Matches: 47, Mismatches: 11, Indels: 12
0.67 0.16 0.17
Matches are distributed among these distances:
9 19 0.40
10 4 0.09
11 24 0.51
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.43
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:16294584 original size:9 final size:10
Alignment explanation
Indices: 16294493--16294585 Score: 52
Period size: 9 Copynumber: 9.4 Consensus size: 10
16294483 TATGAATACG
*
16294493 TCATGTGCATT
1 TCATGT-CATA
16294504 TCAT-TCATA
1 TCATGTCATA
*
16294513 TCATGTGCATT
1 TCATGT-CATA
*
16294524 TCAT-ACATA
1 TCATGTCATA
*
16294533 TCATGTGCATT
1 TCATGT-CATA
* *
16294544 TTAT-ACATA
1 TCATGTCATA
16294553 TCATGTGCATA
1 TCATGT-CATA
*
16294564 TCATATCA-A
1 TCATGTCATA
16294573 TCATGT-ATA
1 TCATGTCATA
16294582 TCAT
1 TCAT
16294586 ATCCCACGTA
Statistics
Matches: 62, Mismatches: 13, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
8 1 0.02
9 31 0.50
10 4 0.06
11 26 0.42
ACGTcount: A:0.30, C:0.18, G:0.10, T:0.42
Consensus pattern (10 bp):
TCATGTCATA
Found at i:16295348 original size:27 final size:27
Alignment explanation
Indices: 16295287--16295350 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
16295277 GGCGTATTCA
16295287 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCATACAAGGGTATTACGG
* * *
16295314 TCACTTTACCCTACAGGGGCT-TTACGG
1 TCATTTTACCATACAAGGG-TATTACGG
*
16295341 TCTTTTTACC
1 TCATTTTACC
16295351 TATTAGGGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAAGGGTATTACGG
Found at i:16295471 original size:54 final size:54
Alignment explanation
Indices: 16295389--16295593 Score: 150
Period size: 54 Copynumber: 3.8 Consensus size: 54
16295379 TACAAGAGTG
* * * *** *
16295389 TTTTGGTAAATCTACAAATCAAGGGTATTTCTGTAATTTTTTAAATCAGAGGTA
1 TTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAACCAGAGGTA
* *
16295443 TTTTGGTAATTTTACAAATTGAA-GGTATTTCGGTAATTTCACAAACCAGTGGTA
1 TTTTGGTAATTTTACAAA-TCAAGGGTATTTCGGTAATTTCACAAACCAGAGGTA
** * * * *
16295497 TTTTGGTAA-TTTATGAA-CTAGGGGTATTTTGGTAATTTTACAAACTA-AGGGTA
1 TTTTGGTAATTTTACAAATC-AAGGGTATTTCGGTAATTTCACAAACCAGA-GGTA
* * ** * *
16295550 TTATGGTAATTCTATCCTAT-AGGGGTATTTCAGTAATTTCACAA
1 TTTTGGTAATTTTA-CAAATCAAGGGTATTTCGGTAATTTCACAA
16295594 TCGAGGGTAA
Statistics
Matches: 119, Mismatches: 25, Indels: 14
0.75 0.16 0.09
Matches are distributed among these distances:
52 1 0.01
53 40 0.34
54 74 0.62
55 4 0.03
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (54 bp):
TTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTCACAAACCAGAGGTA
Found at i:16295556 original size:27 final size:27
Alignment explanation
Indices: 16295389--16295560 Score: 140
Period size: 27 Copynumber: 6.4 Consensus size: 27
16295379 TACAAGAGTG
* *
16295389 TTTTGGTAAATCTACAAA-TCAAGGGTA
1 TTTTGGTAATTTTACAAACT-AAGGGTA
** *
16295416 TTTCT-GTAATTTTTTAAA-TCAGAGGTA
1 TTT-TGGTAATTTTACAAACTAAG-GGTA
*
16295443 TTTTGGTAATTTTACAAATTGAA-GGTA
1 TTTTGGTAATTTTACAAACT-AAGGGTA
* * *
16295470 TTTCGGTAATTTCACAAAC-CAGTGGTA
1 TTTTGGTAATTTTACAAACTAAG-GGTA
** *
16295497 TTTTGGTAA-TTTATGAACTAGGGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTA
16295523 TTTTGGTAATTTTACAAACTAAGGGTA
1 TTTTGGTAATTTTACAAACTAAGGGTA
*
16295550 TTATGGTAATT
1 TTTTGGTAATT
16295561 CTATCCTATA
Statistics
Matches: 114, Mismatches: 22, Indels: 18
0.74 0.14 0.12
Matches are distributed among these distances:
25 1 0.01
26 22 0.19
27 88 0.77
28 2 0.02
29 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.41
Consensus pattern (27 bp):
TTTTGGTAATTTTACAAACTAAGGGTA
Found at i:16295601 original size:53 final size:52
Alignment explanation
Indices: 16295466--16295602 Score: 150
Period size: 53 Copynumber: 2.6 Consensus size: 52
16295456 ACAAATTGAA
* * *
16295466 GGTATTTCGGTAATTTCACAAACCAGTGGTATTTTGGTAATTTATGAACTAGG
1 GGTATTTCGGTAATTTCACAAACAAG-GGTATTATGGTAATTTATCAACTAGG
* * *
16295519 GGTATTTTGGTAATTTTACAAACTAAGGGTATTATGGTAATTCTATCCTA-TAGG
1 GGTATTTCGGTAATTTCACAAAC-AAGGGTATTATGGTAATT-TAT-CAACTAGG
* * *
16295573 GGTATTTCAGTAATTTCACAATCGAGGGTA
1 GGTATTTCGGTAATTTCACAAACAAGGGTA
16295603 AAACGGTAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
53 41 0.59
54 28 0.40
55 1 0.01
ACGTcount: A:0.29, C:0.11, G:0.22, T:0.38
Consensus pattern (52 bp):
GGTATTTCGGTAATTTCACAAACAAGGGTATTATGGTAATTTATCAACTAGG
Found at i:16295626 original size:27 final size:27
Alignment explanation
Indices: 16295592--16295735 Score: 155
Period size: 27 Copynumber: 5.3 Consensus size: 27
16295582 GTAATTTCAC
* *
16295592 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
16295619 AA-CTGAGGGTAAAATGGTAATTCTATA
1 AATC-GAGGGTAAAATGGTAATTTTATA
** *
16295646 AATCGAGGGTAAAATAATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTATA
* * * * *
16295673 AATTGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
16295700 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTATA
*
16295727 AATAGAGGG
1 AATCGAGGG
16295736 CATTTCAGTA
Statistics
Matches: 95, Mismatches: 20, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
26 1 0.01
27 93 0.98
28 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTATA
Found at i:16295667 original size:54 final size:54
Alignment explanation
Indices: 16295592--16295723 Score: 201
Period size: 54 Copynumber: 2.4 Consensus size: 54
16295582 GTAATTTCAC
* * *
16295592 AATCGAGGGTAAAACGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAACGATAATTCTATA
** * *
16295646 AATCGAGGGTAAAATAATAATTTTGTAAATTGAGGGTGAAACGATAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAACGATAATTCTATA
16295700 AATCGAGGGTAAAATGGTAATTTT
1 AATCGAGGGTAAAATGGTAATTTT
16295724 ACAAATAGAG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.40, C:0.06, G:0.23, T:0.31
Consensus pattern (54 bp):
AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAACGATAATTCTATA
Found at i:16297506 original size:54 final size:54
Alignment explanation
Indices: 16297434--16297749 Score: 350
Period size: 54 Copynumber: 5.9 Consensus size: 54
16297424 TACTGAAATG
* * * **
16297434 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCGTTTTA
1 CCCTCGATTTATAGAATTACCAATTTACCCTCGATTTACAGAATTACCGTTTTA
* * * * *
16297488 CCCTTGATTTACAGAATTACCATTTTACCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAGAATTACCAATTTACCCTCGATTTACAGAATTACCGTTTTA
* ** * *
16297542 CCCTCGATTTATAGAA-TATCGTTTTACCCTCGATTTACAGAATTATCGTTTTT
1 CCCTCGATTTATAGAATTACCAATTTACCCTCGATTTACAGAATTACCGTTTTA
* * * *
16297595 CCCTCGATTTATAGAATTA-GAATTTTACCATCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCAA-TTTACCCTCGATTTACAGAATTACCGTTTTA
* * * *
16297649 CGCTCGATTTATAGAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAGAATTACCAATTTACCCTCGATTTACAGAATTACCGTTTTA
* ** *
16297703 CCCTCAATTTATAGAATTA-CAATTTTACCCTTAATTTACAAAATTAC
1 CCCTCGATTTATAGAATTACCAA-TTTACCCTCGATTTACAGAATTAC
16297750 TGAAATACCC
Statistics
Matches: 223, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
53 51 0.23
54 171 0.77
55 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (54 bp):
CCCTCGATTTATAGAATTACCAATTTACCCTCGATTTACAGAATTACCGTTTTA
Found at i:16297749 original size:27 final size:27
Alignment explanation
Indices: 16297459--16297733 Score: 381
Period size: 27 Copynumber: 10.2 Consensus size: 27
16297449 ATTACCAAAG
* *
16297459 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
16297486 TACCCTTGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
16297513 TACCCTCGATTTATAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
16297540 TACCCTCGATTTATAGAA-TATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
16297566 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
16297593 TTCCCTCGATTTATAGAATTAGAATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
16297620 TACCATCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
16297647 TACGCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
16297674 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
16297701 TACCCTCAATTTATAGAATTACAATTT
1 TACCCTCGATTTATAGAATTACCATTT
16297728 TACCCT
1 TACCCT
16297734 TAATTTACAA
Statistics
Matches: 226, Mismatches: 21, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 25 0.11
27 201 0.89
ACGTcount: A:0.29, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:16297853 original size:54 final size:53
Alignment explanation
Indices: 16297737--16297923 Score: 171
Period size: 54 Copynumber: 3.5 Consensus size: 53
16297727 TTACCCTTAA
* ** * ** *
16297737 TTTACAAAATTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCG
1 TTTATAAAATTACCAAAATACCCCTGGTTTGTAAATTTACCAAAATACCCTCG
* * * *
16297790 ATCAGTAAAATTACCAAAATACCCCTGGTTTGTAAATTTACTAAAATACCCCTGG
1 TTTA-TAAAATTACCAAAATACCCCTGGTTTGTAAATTTACCAAAATA-CCCTCG
* * *
16297845 TTTATAAAATTACCAAAATACCCCTGATTTGTGAAA-TTATCAAAATACTCTCG
1 TTTATAAAATTACCAAAATACCCCTGGTTTGT-AAATTTACCAAAATACCCTCG
* * *
16297898 ATTTGTAAAA-TATCGAAATACCCCTG
1 -TTTATAAAATTACCAAAATACCCCTG
16297924 TAGGGTAGAA
Statistics
Matches: 109, Mismatches: 21, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
53 20 0.18
54 79 0.72
55 10 0.09
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (53 bp):
TTTATAAAATTACCAAAATACCCCTGGTTTGTAAATTTACCAAAATACCCTCG
Found at i:16297868 original size:27 final size:27
Alignment explanation
Indices: 16297737--16297892 Score: 161
Period size: 27 Copynumber: 5.8 Consensus size: 27
16297727 TTACCCTTAA
* ** *
16297737 TTTACAAAATTACTGAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTGG
* *
16297764 TTTACAAAATTACCAAAATA-CCCTCG
1 TTTATAAAATTACCAAAATACCCCTGG
* *
16297790 ATCAGTAAAATTACCAAAATACCCCTGG
1 TTTA-TAAAATTACCAAAATACCCCTGG
* * *
16297818 TTTGTAAATTTACTAAAATACCCCTGG
1 TTTATAAAATTACCAAAATACCCCTGG
*
16297845 TTTATAAAATTACCAAAATACCCCTGA
1 TTTATAAAATTACCAAAATACCCCTGG
* * *
16297872 TTTGTGAAATTATCAAAATAC
1 TTTATAAAATTACCAAAATAC
16297893 TCTCGATTTG
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 6 0.06
27 95 0.89
28 6 0.06
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTGG
Found at i:16297900 original size:27 final size:26
Alignment explanation
Indices: 16297770--16297950 Score: 127
Period size: 27 Copynumber: 6.8 Consensus size: 26
16297760 TTGGTTTACA
* **
16297770 AAATTACCAAAATA-CCCTCGATCAGT
1 AAATTATCAAAATACCCCT-GATTTGT
* *
16297796 AAAATTACCAAAATACCCCTGGTTTGT
1 -AAATTATCAAAATACCCCTGATTTGT
* *
16297823 AAATT-TACTAAAATACCCCTGGTTTAT
1 AAATTAT-C-AAAATACCCCTGATTTGT
*
16297850 AAAATTACCAAAATACCCCTGATTTGT
1 -AAATTATCAAAATACCCCTGATTTGT
*
16297877 GAAATTATCAAAATA-CTCTCGATTTGT
1 -AAATTATCAAAATACCCCT-GATTTGT
* * **
16297904 AAAATATCGAAATACCCCTG-TAGGGT
1 AAATTATCAAAATACCCCTGAT-TTGT
*
16297930 AGAATTATCGAAATACCCCTG
1 A-AATTATCAAAATACCCCTG
16297951 TAGGGTAGAA
Statistics
Matches: 128, Mismatches: 17, Indels: 18
0.79 0.10 0.11
Matches are distributed among these distances:
25 1 0.01
26 25 0.20
27 92 0.72
28 10 0.08
ACGTcount: A:0.39, C:0.21, G:0.11, T:0.29
Consensus pattern (26 bp):
AAATTATCAAAATACCCCTGATTTGT
Found at i:16297903 original size:81 final size:81
Alignment explanation
Indices: 16297746--16297906 Score: 209
Period size: 81 Copynumber: 2.0 Consensus size: 81
16297736 ATTTACAAAA
* *
16297746 TTACTGAAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA
1 TTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA
*
16297811 CCCCTGGTTTGTAAAT
66 CCCCTGATTTGTAAAT
* ** * *
16297827 TTACTAAAATACCCCTGGTTTATAAAATTACCAAAATACCC-CTGATTTGTGAAATTATCAAAAT
1 TTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTC-GATCAGTAAAATTACCAAAAT
*
16297891 A-CTCTCGATTTGTAAA
65 ACCCCT-GATTTGTAAA
16297907 ATATCGAAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
80 4 0.06
81 65 0.94
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (81 bp):
TTACTAAAATACCCCTGGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA
CCCCTGATTTGTAAAT
Found at i:16297951 original size:27 final size:27
Alignment explanation
Indices: 16297908--16297990 Score: 130
Period size: 27 Copynumber: 3.1 Consensus size: 27
16297898 ATTTGTAAAA
16297908 TATCGAAATACCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
16297935 TATCGAAATACCCCTGTAGGGTAGAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
* * * *
16297962 TATCGAGATACCCTTGTGGGGTAAAAT
1 TATCGAAATACCCCTGTAGGGTAGAAT
16297989 TA
1 TA
16297991 CCATTTTGCC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.28
Consensus pattern (27 bp):
TATCGAAATACCCCTGTAGGGTAGAAT
Found at i:16298276 original size:24 final size:25
Alignment explanation
Indices: 16298194--16298263 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 25
16298184 ATGAAGTGCT
* * * *
16298194 AAAAGGGCTATGCCCCAGCTTACCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
16298219 AGAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
*
16298244 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
16298264 ATTAAAAGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:16300962 original size:19 final size:19
Alignment explanation
Indices: 16300938--16300978 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
16300928 CTTTCTTTCT
16300938 TTTGCATT-CATTCCATGCA
1 TTTGCATTGCATTCCAT-CA
*
16300957 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTCCATCA
16300976 TTT
1 TTT
16300979 CTATTAGATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.46
Consensus pattern (19 bp):
TTTGCATTGCATTCCATCA
Found at i:16304753 original size:16 final size:16
Alignment explanation
Indices: 16304732--16304774 Score: 86
Period size: 16 Copynumber: 2.7 Consensus size: 16
16304722 GTAGATCGGC
16304732 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
16304748 AAAAGCTGAAATGCCG
1 AAAAGCTGAAATGCCG
16304764 AAAAGCTGAAA
1 AAAAGCTGAAA
16304775 GTTTGATGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (16 bp):
AAAAGCTGAAATGCCG
Found at i:16304758 original size:8 final size:8
Alignment explanation
Indices: 16304732--16304774 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
16304722 GTAGATCGGC
16304732 AAAAGCTG
1 AAAAGCTG
* *
16304740 AAATGCCG
1 AAAAGCTG
16304748 AAAAGCTG
1 AAAAGCTG
* *
16304756 AAATGCCG
1 AAAAGCTG
16304764 AAAAGCTG
1 AAAAGCTG
16304772 AAA
1 AAA
16304775 GTTTGATGAC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (8 bp):
AAAAGCTG
Found at i:16305071 original size:28 final size:28
Alignment explanation
Indices: 16304987--16305076 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 28
16304977 TGAGCATGAC
*
16304987 TATAACTGTGAATTGGGCCT-GATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
* * *
16305016 TATAAATGTAATTCGGGCCTAATAGGCCA
1 TATAAATGTGATT-GGGCCTAGTGGGCCA
16305045 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
16305073 TATA
1 TATA
16305077 CAGGTATGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
28 20 0.38
29 32 0.62
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.29
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:16305387 original size:26 final size:27
Alignment explanation
Indices: 16305358--16305408 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
16305348 CGTAATTCAA
*
16305358 GGAAAAA-TTACCAAAATACCCCTAAG
1 GGAAAAAGTGACCAAAATACCCCTAAG
**
16305384 GGAAAAAGTGACTGAAATACCCCTA
1 GGAAAAAGTGACCAAAATACCCCTA
16305409 GGTGAAGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 7 0.33
27 14 0.67
ACGTcount: A:0.47, C:0.22, G:0.16, T:0.16
Consensus pattern (27 bp):
GGAAAAAGTGACCAAAATACCCCTAAG
Found at i:16305447 original size:11 final size:11
Alignment explanation
Indices: 16305431--16305460 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
16305421 TGGATGTGAC
*
16305431 ATGCATATCTG
1 ATGCATACCTG
16305442 ATGCATACCTG
1 ATGCATACCTG
16305453 ATGCATAC
1 ATGCATAC
16305461 ATATGATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (11 bp):
ATGCATACCTG
Found at i:16309032 original size:64 final size:64
Alignment explanation
Indices: 16308959--16309147 Score: 351
Period size: 64 Copynumber: 3.0 Consensus size: 64
16308949 TCATTCATAA
* *
16308959 CACATCTAGTTAGGAGCATTTGATTCATTTCGAGCATAGCATCCTAATTATTTGACATAAGTGT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGTGT
16309023 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGTGT
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGTGT
*
16309087 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGGCATAAG
1 CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAG
16309148 CATAGATACA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 122 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGTGT
Found at i:16309626 original size:173 final size:173
Alignment explanation
Indices: 16309443--16309939 Score: 549
Period size: 173 Copynumber: 2.8 Consensus size: 173
16309433 AAAGATTGCA
* *
16309443 AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAAGTTG
1 AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTAAAGTAG
* *
16309508 C-AGTGGAGCAGGCT-CAATATACAAGTCTTAT-TTCCCTGAGGTTGC-AGTGGAGCAGACTGAA
66 CAAG-GGAGCAGGCTGCAAT-T-CAAGTCTTATCTT-CCTGAGGTAGCAAG-GAAGCAGACTGAA
* * *
16309569 GATTCAAGATTTTATCTCCCTAAGCATTTGTGGAGCAGATCGAAGA-G
126 GATTCAAGATCTTATCTCCCTAAGCAGTTGTGGAGAAGATCGAAGAGG
* * * *
16309616 AATCTTATCTCCATGTAT-TGACAATGGAGCAGA-TTATAGCCACTAGCCTTGTCTCTCTGAGGT
1 AATCTTATCTCCATGTATCAG-CAATGGAGCAGATTTA-AGCCACTAGCCTTATCTCTCTAAAGT
* * * **
16309679 AGCAAGGGAGTAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
64 AGCAAGGGAGCAGGCT-GCAATTCAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGA
* **
16309744 TTGAAGATCTTATCTCCCTAAGCAGTTGTGGAGAATTTCGAAGATGGCG
128 TTCAAGATCTTATCTCCCTAAGCAGTTGTGGAGAAGATCGAAGA--G-G
* * * *
16309793 AATCTTATCTCCATGTATCAACAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAG
1 AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTAAAGTAG
** * * **
16309858 CAAAAGAGCAGGTTGACTATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGGGAGCAGGCTG-CAATTCAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
** *
16309923 GTAGATCTTATTTCCCT
130 CAAGATCTTATCTCCCT
16309940 GATGTAGCAG
Statistics
Matches: 281, Mismatches: 29, Indels: 24
0.84 0.09 0.07
Matches are distributed among these distances:
172 4 0.01
173 132 0.47
174 7 0.02
175 3 0.01
176 1 0.00
177 132 0.47
178 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (173 bp):
AATCTTATCTCCATGTATCAGCAATGGAGCAGATTTAAGCCACTAGCCTTATCTCTCTAAAGTAG
CAAGGGAGCAGGCTGCAATTCAAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTC
AAGATCTTATCTCCCTAAGCAGTTGTGGAGAAGATCGAAGAGG
Found at i:16309856 original size:177 final size:175
Alignment explanation
Indices: 16309400--16309939 Score: 635
Period size: 177 Copynumber: 3.1 Consensus size: 175
16309390 AAGTGACAGG
** * * * * *
16309400 TCTTATCTCCCTGAAGTTGTAGTGGAGAAGACCAAAGATTGCAAATCTTATCTCCATGTATCAGC
1 TCTTATCTCCCT-AAGCAGTTGTGGAGAAGATCGAAGA-TGCGAATCTTATCTCCATGTATCAAC
* * * * * *
16309465 AATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTAAAGTTGC-AGTGGAGCAGGCT-CAATAT
64 AATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAG-GGAGCAGGTTGCAAT-T
** * * *
16309528 ACAAGTCTTAT-TTCCCTGAGGTTGC-AGTGGAGCAGACTGAAGATTCAAGA
127 -GTAGTCTTATCTT-CCTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGA
* * * **
16309578 TTTTATCTCCCTAAGCATTTGTGGAGCAGATCGAAGA---GAATCTTATCTCCATGTATTGACAA
1 TCTTATCTCCCTAAGCAGTTGTGGAGAAGATCGAAGATGCGAATCTTATCTCCATGTATCAACAA
* * * *
16309640 TGGAGCAGATTATAGCCACTAGCCTTGTCTCTCTGAGGTAGCAAGGGAGTAGGTTGGCGATTGTA
66 TGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGGGAGCAGGTT-GCAATTGTA
16309705 GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
130 GTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
**
16309751 TCTTATCTCCCTAAGCAGTTGTGGAGAATTTCGAAGATGGCGAATCTTATCTCCATGTATCAACA
1 TCTTATCTCCCTAAGCAGTTGTGGAGAAGATCGAAGAT-GCGAATCTTATCTCCATGTATCAACA
** *
16309816 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAAAGAGCAGGTTGACTATTGT
65 ATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGGGAGCAGGTTG-CAATTGT
*
16309881 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGTAGA
129 AGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
*
16309928 TCTTATTTCCCT
1 TCTTATCTCCCT
16309940 GATGTAGCAG
Statistics
Matches: 310, Mismatches: 42, Indels: 21
0.83 0.11 0.06
Matches are distributed among these distances:
173 134 0.43
174 7 0.02
175 3 0.01
176 1 0.00
177 154 0.50
178 11 0.04
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (175 bp):
TCTTATCTCCCTAAGCAGTTGTGGAGAAGATCGAAGATGCGAATCTTATCTCCATGTATCAACAA
TGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAGGTAGCAAGGGAGCAGGTTGCAATTGTAG
TCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGA
Found at i:16309912 original size:44 final size:45
Alignment explanation
Indices: 16309840--16309948 Score: 109
Period size: 44 Copynumber: 2.4 Consensus size: 45
16309830 AGCCACTAGC
** **
16309840 CTTATC-TCTCTGAGGTAGCAAAAGAGCAGGTTGACTATTGTAG-T
1 CTTATCTTC-CTGAGGTAGCAAAAGAGCAGACTGAAGATTGTAGAT
*
16309884 CTTATCTTCCTGAGGTAGC-AAGGAAGCAGACTGAAGATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAAAG-AGCAGACTGAAGATTGTAGAT
*
16309929 CTTAT-TTCCCTGATGTAGCA
1 CTTATCTT-CCTGAGGTAGCA
16309949 GTGGAGCAGA
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
43 3 0.06
44 33 0.61
45 18 0.33
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (45 bp):
CTTATCTTCCTGAGGTAGCAAAAGAGCAGACTGAAGATTGTAGAT
Found at i:16311968 original size:39 final size:39
Alignment explanation
Indices: 16311851--16312060 Score: 325
Period size: 39 Copynumber: 5.3 Consensus size: 39
16311841 GCTCCTCGTT
* *
16311851 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
16311891 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
16311931 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
16311970 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
16312009 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
16312048 CAAATGCCTTCGG
1 CAAATGCCTTCGG
16312061 ATCTTAGTCT
Statistics
Matches: 162, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
39 114 0.70
40 46 0.28
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:16312096 original size:78 final size:78
Alignment explanation
Indices: 16311851--16312112 Score: 311
Period size: 78 Copynumber: 3.3 Consensus size: 78
16311841 GCTCCTCGTT
* * *
16311851 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
* * *
16311914 GGATTTAGTAACTCGCA
62 GGAATTAGTATCTAGCA
16311931 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
*
16311996 TTAGTATCTCGCA
66 TTAGTATCTAGCA
* * *
16312009 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCTGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGGA
16312074 TATT-GTCA-CTTAGCA
65 -ATTAGT-ATC-TAGCA
16312089 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
16312113 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
78 85 0.51
79 57 0.34
80 24 0.14
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
TTAGTATCTAGCA
Found at i:16331422 original size:40 final size:40
Alignment explanation
Indices: 16331355--16331600 Score: 340
Period size: 40 Copynumber: 6.2 Consensus size: 40
16331345 CCTTCGGAGT
* *
16331355 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
*
16331394 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* ** *
16331433 TTAGCCCGGTTATAGTAACTCATACAAGTGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
16331473 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
16331513 TTATCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
16331552 TTAGCCC-GAAATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
16331592 TTAGCCCGG
1 TTAGCCCGG
16331601 TTATCAATCC
Statistics
Matches: 186, Mismatches: 15, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 3 0.02
39 72 0.39
40 110 0.59
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:16331476 original size:79 final size:80
Alignment explanation
Indices: 16331378--16331604 Score: 343
Period size: 79 Copynumber: 2.9 Consensus size: 80
16331368 GCTACTAGCT
*
16331378 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
16331442 TTATAGTAACTCATA
66 TTATAGTAACTCACA
* *
16331457 CAAGTGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTATCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
16331522 ATATAGTAACTCGCA
66 TTATAGTAACTCACA
* * *
16331537 CAAATGCCTTCGGG-CTTAGCCC-GAAATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
16331600 GTTAT
65 GTTAT
16331605 CAATCCGAAT
Statistics
Matches: 134, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
78 3 0.02
79 94 0.70
80 37 0.28
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
TTATAGTAACTCACA
Found at i:16331549 original size:119 final size:119
Alignment explanation
Indices: 16331355--16331600 Score: 347
Period size: 119 Copynumber: 2.1 Consensus size: 119
16331345 CCTTCGGAGT
* *
16331355 TTAG-CCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
** * *
16331419 AAATGCCTTCGGACTTAGCCCG-GTTATAGTAACTCA-TACAAGTGCCTTCGGGAC
66 AAATGCCTTCGGACTTAGCCCGAAAT-TAGTAACT-AGCACAAATGCCTTCGGGAC
* *
16331473 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTATCCCGGATATAGTAACTCGCA
1 TTAGCCCGGATATAGCT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
16331537 CAAATGCCTTCGGGCTTAGCCCGAAATTAGTCACTAGCACAAATGCCTTCGGGAC
65 CAAATGCCTTCGGACTTAGCCCGAAATTAGTAACTAGCACAAATGCCTTCGGGAC
16331592 TTAGCCCGG
1 TTAGCCCGG
16331601 TTATCAATCC
Statistics
Matches: 114, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
118 6 0.05
119 107 0.94
120 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC
AAATGCCTTCGGACTTAGCCCGAAATTAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:16332325 original size:1 final size:1
Alignment explanation
Indices: 16332319--16332368 Score: 64
Period size: 1 Copynumber: 50.0 Consensus size: 1
16332309 ACTAAAAGCT
* ***
16332319 AAAAAAAAAAAAAAAAAAAACATGGAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
16332369 CATTTCATTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.92, C:0.02, G:0.04, T:0.02
Consensus pattern (1 bp):
A
Found at i:16332697 original size:52 final size:51
Alignment explanation
Indices: 16332618--16332744 Score: 220
Period size: 52 Copynumber: 2.5 Consensus size: 51
16332608 ATTTCCTCAA
* *
16332618 AGCTCTTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
16332669 AGCTTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGC-TTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
16332721 AGCTTTTTTTCTTTCTTTTT-TTTC
1 AGCTTTTTTTCTTTCTTTTTCTTTC
16332745 ATCATCATTT
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
50 4 0.05
51 20 0.27
52 49 0.67
ACGTcount: A:0.17, C:0.22, G:0.10, T:0.51
Consensus pattern (51 bp):
AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
Found at i:16349640 original size:48 final size:46
Alignment explanation
Indices: 16349537--16349661 Score: 148
Period size: 48 Copynumber: 2.7 Consensus size: 46
16349527 AGATGTAAGC
* * *
16349537 CAGTATAAGA-CATGTCTGGGACAT-GCATCGGTTATGAGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGATATGAGAGGTGT
*
16349581 CACTGTAAGACCATGTCTGGGACATGGCATCGGCACATAT-AGAGGTGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG---ATATGAGAGGTGT
* *
16349629 CAGTGTAAGACCATGTCTGAGACATGGAATCGG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG
16349662 TACAAATATG
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
44 8 0.12
45 14 0.20
46 7 0.10
48 37 0.54
49 3 0.04
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (46 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGATATGAGAGGTGT
Found at i:16349703 original size:50 final size:48
Alignment explanation
Indices: 16349579--16349705 Score: 141
Period size: 48 Copynumber: 2.6 Consensus size: 48
16349569 TATGAGATGT
* * *
16349579 GTCACTGTAAGACCATGTCTGGGACATGGCATCGGCACATATAGAGGT
1 GTCACTGTAAGACCATGTCTGGGACATGGAATCGGCACAAATAGAGGA
* * * *
16349627 GTCAGTGTAAGACCATGTCTGAGACATGGAATCGGTACAAATATGTGAGA
1 GTCACTGTAAGACCATGTCTGGGACATGGAATCGGCACAAATA-GAG-GA
16349677 G-CTACTGTAAGACCATGT-TCGGGACATGG
1 GTC-ACTGTAAGACCATGTCT-GGGACATGG
16349706 TGTTGGCTTC
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
48 38 0.58
49 4 0.06
50 24 0.36
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (48 bp):
GTCACTGTAAGACCATGTCTGGGACATGGAATCGGCACAAATAGAGGA
Found at i:16350929 original size:21 final size:20
Alignment explanation
Indices: 16350903--16350942 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
16350893 GTTATAATGA
16350903 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGTGTG-TGCCCTT
16350924 CCACACGGGTGTGTGCCCT
1 CCACACGGGTGTGTGCCCT
16350943 GTTTTAAGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.10, C:0.35, G:0.30, T:0.25
Consensus pattern (20 bp):
CCACACGGGTGTGTGCCCTT
Found at i:16361149 original size:51 final size:51
Alignment explanation
Indices: 16361094--16361191 Score: 126
Period size: 51 Copynumber: 1.9 Consensus size: 51
16361084 CTTGTAGTGA
* *
16361094 AAGCTACCTTATT-CACAAAGTGGCCTTCACATAGTACCACACTTGTGACCC
1 AAGCTACCTT-TTACACAAAGTGGCCTGCACATAGTACCACACATGTGACCC
** * *
16361145 AAGCTATGTTTTACACATAGTGGCCTGCACTTAGTACCACACATGTG
1 AAGCTACCTTTTACACAAAGTGGCCTGCACATAGTACCACACATGTG
16361192 TTCGAAGCTA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
50 2 0.05
51 38 0.95
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.28
Consensus pattern (51 bp):
AAGCTACCTTTTACACAAAGTGGCCTGCACATAGTACCACACATGTGACCC
Found at i:16361200 original size:51 final size:51
Alignment explanation
Indices: 16361107--16361240 Score: 144
Period size: 51 Copynumber: 2.6 Consensus size: 51
16361097 CTACCTTATT
* * * * **
16361107 CACAAAGTGGCCTTCACATAGTACCACACTTGTGACCCAAGCTAT-GTTTTA
1 CACATAGTGGCCTGCACTTAGTACCACACATGTGACCCAAGCTATCG-GGTA
** *
16361158 CACATAGTGGCCTGCACTTAGTACCACACATGTGTTCGAAGCTATCGGGTA
1 CACATAGTGGCCTGCACTTAGTACCACACATGTGACCCAAGCTATCGGGTA
* * *
16361209 CGCATAGTAGCCTGCACTTAGTACTACACATG
1 CACATAGTGGCCTGCACTTAGTACCACACATG
16361241 CTACCTAACC
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
51 69 0.99
52 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (51 bp):
CACATAGTGGCCTGCACTTAGTACCACACATGTGACCCAAGCTATCGGGTA
Found at i:16365718 original size:25 final size:25
Alignment explanation
Indices: 16365689--16365745 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
16365679 TACCCAGAAT
16365689 AACATCAAAATCATCAAATGGTAAC
1 AACATCAAAATCATCAAATGGTAAC
*
16365714 AACATCAAACTCATCAAATGGTAAC
1 AACATCAAAATCATCAAATGGTAAC
16365739 AACATCA
1 AACATCA
16365746 GATTGTCAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.07, T:0.19
Consensus pattern (25 bp):
AACATCAAAATCATCAAATGGTAAC
Found at i:16369257 original size:25 final size:25
Alignment explanation
Indices: 16369229--16369307 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 25
16369219 CTAATGGCCG
16369229 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* * * *
16369254 ATGTGAT-AAGGCCGAATG-GCA-A-
1 ATGTGATGAATG-TGAAAGTGTATAT
16369276 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
16369301 ATGTGAT
1 ATGTGAT
16369308 AAGGCCTAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
22 11 0.27
23 6 0.15
24 6 0.15
25 18 0.44
ACGTcount: A:0.35, C:0.04, G:0.29, T:0.32
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:16369257 original size:47 final size:47
Alignment explanation
Indices: 16369204--16369357 Score: 263
Period size: 47 Copynumber: 3.3 Consensus size: 47
16369194 ACAAGATATG
16369204 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* **
16369251 TATATGTGATAAGGCCGAATGGCAAATGTGATGAATGTGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
* *
16369298 TATATGTGATAAGGCCTAATGGCCGTTGTGATGAATGGGAAAGTGTA
1 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
16369345 TATATGTGATAAG
1 TATATGTGATAAG
16369358 TCCCGAAGGA
Statistics
Matches: 99, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 99 1.00
ACGTcount: A:0.33, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
Found at i:16371388 original size:28 final size:28
Alignment explanation
Indices: 16371356--16371439 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
16371346 AACTGTGATC
16371356 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * *
16371384 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
16371406 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
16371434 ACGTGT
1 ACGTGT
16371440 ACCAGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 16
0.66 0.09 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.19
23 2 0.05
24 3 0.07
25 6 0.14
26 3 0.07
27 2 0.05
28 14 0.33
29 2 0.05
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.30
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:16371474 original size:49 final size:49
Alignment explanation
Indices: 16371308--16371545 Score: 314
Period size: 49 Copynumber: 4.8 Consensus size: 49
16371298 TGAGGTCGCA
* * * *
16371308 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGGTCACG
* * **
16371359 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACG
*
16371409 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* * *
16371458 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* * *
16371507 TGTGTAGTACTATGTACAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
16371546 GCTTTGGCTA
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 88 0.53
50 46 0.28
51 33 0.20
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
Found at i:16371489 original size:99 final size:100
Alignment explanation
Indices: 16371301--16371545 Score: 332
Period size: 99 Copynumber: 2.5 Consensus size: 100
16371291 TCTATTGTGA
* * *
16371301 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAG
* **
16371366 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
16371401 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTA
* *
16371464 GTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
16371500 GGTCGCATGTGTAGTACTATGTACAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
16371546 GCTTTGGCTA
Statistics
Matches: 126, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
98 40 0.32
99 44 0.35
100 1 0.01
101 41 0.33
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Done.