Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 59 of 259
Found at i:18844869 original size:27 final size:27
Alignment explanation
Indices: 18844828--18844952 Score: 121
Period size: 27 Copynumber: 4.6 Consensus size: 27
18844818 TAGAAAGTCA
**
18844828 AGGGTATTTCT-GTAATTTTGTAAATTG
1 AGGGTATTT-TGGTAATTTTACAAATTG
*
18844855 GGGGTATTTTGGTAATTTTACAAATTG
1 AGGGTATTTTGGTAATTTTACAAATTG
* * * **
18844882 AGGGTATTTCGATAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTACAAATTG
*
18844908 AGTGGTATTTTGGTAATTTTACAAACT-
1 AG-GGTATTTTGGTAATTTTACAAATTG
18844935 ATGGGTATTTTGGTAATT
1 A-GGGTATTTTGGTAATT
18844953 CTATCCTACA
Statistics
Matches: 81, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
26 3 0.04
27 77 0.95
28 1 0.01
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTACAAATTG
Found at i:18845018 original size:27 final size:27
Alignment explanation
Indices: 18844984--18845053 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
18844974 GTAATTTCAC
*
18844984 AATCGAGGGTAAAACGGTAGTTTTGTA
1 AATCGAGGGTAAAACGGTAATTTTGTA
*
18845011 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTTTGTA
18845038 AATCGAGGGTAAAACG
1 AATCGAGGGTAAAACG
18845054 ATAACTCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 1 0.03
27 36 0.95
28 1 0.03
ACGTcount: A:0.37, C:0.07, G:0.29, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTTTGTA
Found at i:18845098 original size:54 final size:53
Alignment explanation
Indices: 18844974--18845100 Score: 130
Period size: 54 Copynumber: 2.4 Consensus size: 53
18844964 GGGTATTTCA
* * ** * *
18844974 GTAATTTCACAATCGAGGGTAAAACGGTAGTTTTGTAAACTGAGGGTAAAATG
1 GTAATTTTACAATCGAGGGTAAAACGATAACTCTATAAACTGAGGGTAAAATG
* ***
18845027 GTAATTTTGTA-AATCGAGGGTAAAACGATAACTCTATAAATTGAGGGTACTTTG
1 GTAA-TTT-TACAATCGAGGGTAAAACGATAACTCTATAAACTGAGGGTAAAATG
18845081 GTAATTTTACAAGTCGAGGG
1 GTAATTTTACAA-TCGAGGG
18845101 CATTTCAATA
Statistics
Matches: 60, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
52 2 0.03
53 9 0.15
54 48 0.80
55 1 0.02
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (53 bp):
GTAATTTTACAATCGAGGGTAAAACGATAACTCTATAAACTGAGGGTAAAATG
Found at i:18847579 original size:43 final size:43
Alignment explanation
Indices: 18847532--18847652 Score: 104
Period size: 42 Copynumber: 2.8 Consensus size: 43
18847522 CCTCGATTGA
*
18847532 GATTTACGTATAAGACCATGTTTGGGACATCGGCATC-ATATTT
1 GATTTACGTATAAGACCATGTATGGGACATCGGCATCGATA-TT
* * * **
18847575 GATTT-CGTGTAAGACCCTATATGGGACAGAGGCATCGATATT
1 GATTTACGTATAAGACCATGTATGGGACATCGGCATCGATATT
* * * * *
18847617 GAATTA-GATTTAAGACCACGTCTGGGACGTCGGCAT
1 GATTTACG-TATAAGACCATGTATGGGACATCGGCAT
18847653 TGTACTTGTT
Statistics
Matches: 60, Mismatches: 15, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
42 32 0.53
43 28 0.47
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
GATTTACGTATAAGACCATGTATGGGACATCGGCATCGATATT
Found at i:18853537 original size:24 final size:24
Alignment explanation
Indices: 18853510--18853558 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
18853500 GAATAGGAGG
18853510 ATACTACTGACGCATCAAATTCTT
1 ATACTACTGACGCATCAAATTCTT
* * **
18853534 ATACTGCTGATGCATTGAATTCTT
1 ATACTACTGACGCATCAAATTCTT
18853558 A
1 A
18853559 GGTTCCCACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (24 bp):
ATACTACTGACGCATCAAATTCTT
Found at i:18860347 original size:40 final size:39
Alignment explanation
Indices: 18860288--18860452 Score: 190
Period size: 40 Copynumber: 4.2 Consensus size: 39
18860278 AAACAAAGTA
* * **
18860288 CCTTCGGGATTTA-ACCGGATATAGCTACTCGTTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TACTCGCACAAATG
* * *
18860327 CCTTCGAGACTTAGCCCGGATATAATAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTA-CTCGCACAAATG
*
18860367 CCTTCGGGACTTAGCTCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGT-ACTCGCACAAATG
*
18860407 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGT-ACTCGCACAAATG
18860447 CCTTCG
1 CCTTCG
18860453 TTGTCATCCG
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 14 0.13
40 93 0.86
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGTACTCGCACAAATG
Found at i:18868617 original size:40 final size:40
Alignment explanation
Indices: 18868555--18868799 Score: 309
Period size: 40 Copynumber: 6.2 Consensus size: 40
18868545 AAACCAAGTA
* * *
18868555 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
18868594 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
18868634 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
18868674 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
18868714 CCTTCGGGACTTAGCCC-GAAATTATTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
* * *
18868754 CCTTCGCGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
18868794 CCTTCG
1 CCTTCG
18868800 TTGTCATCCG
Statistics
Matches: 185, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.09
40 167 0.90
41 2 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:18880162 original size:44 final size:47
Alignment explanation
Indices: 18880052--18880173 Score: 146
Period size: 44 Copynumber: 2.6 Consensus size: 47
18880042 GATAAGATGA
* *
18880052 CGACGCCATGTCCCAGACATGGTCTTACGCTGGATAGCACATCAAAGT
1 CGACGCCATGTCCCAGACA-GGTCTTACACTGGACAGCACATCAAAGT
*
18880100 CGATGCCATGTCCCAGACAGGTCTTACACT-GACACGCA-A-C-AAG-
1 CGACGCCATGTCCCAGACAGGTCTTACACTGGACA-GCACATCAAAGT
*
18880143 CTGACGCCATGTCCCAGACAGGTTTTACACT
1 C-GACGCCATGTCCCAGACAGGTCTTACACT
18880174 AGCTTGTATA
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
43 1 0.01
44 30 0.45
45 1 0.01
46 4 0.06
47 13 0.19
48 18 0.27
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.20
Consensus pattern (47 bp):
CGACGCCATGTCCCAGACAGGTCTTACACTGGACAGCACATCAAAGT
Found at i:18880703 original size:46 final size:48
Alignment explanation
Indices: 18880587--18880711 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 48
18880577 ACCTGATTTT
* * *
18880587 GCTGATGCATGTCCCAAACATGTCTCACACTGGCTGGTATATCTCGAG
1 GCTGATGCATGTCCCAAACATGTCTTACACTGGCTGCTATATATCGAG
* * *
18880635 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-CTCA-ATAT-GTG
1 GCTGATGCATGTCCCAAACATGTCTTACACTGGCTGCT-ATATATCGAG
*
18880681 GCTGATGCATGTCCTAAACATGTCTTACACT
1 GCTGATGCATGTCCCAAACATGTCTTACACT
18880712 AGCACACATA
Statistics
Matches: 67, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 30 0.45
47 4 0.06
48 33 0.49
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (48 bp):
GCTGATGCATGTCCCAAACATGTCTTACACTGGCTGCTATATATCGAG
Found at i:18884183 original size:47 final size:47
Alignment explanation
Indices: 18884130--18884754 Score: 1097
Period size: 47 Copynumber: 13.2 Consensus size: 47
18884120 AATTCTAAAT
18884130 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884177 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884224 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884271 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884318 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884365 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884412 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884460 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884508 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
18884555 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATA
1 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*
18884603 TATGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATA
18884652 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
*** * * * * * * *
18884699 TGTGACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
18884746 TGTGATAAG
1 TGTGATAAG
18884755 TCCCGAAGGG
Statistics
Matches: 557, Mismatches: 17, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
47 372 0.67
48 140 0.25
49 45 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:18884718 original size:143 final size:142
Alignment explanation
Indices: 18884130--18884754 Score: 1094
Period size: 143 Copynumber: 4.4 Consensus size: 142
18884120 AATTCTAAAT
18884130 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
18884194 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
18884259 AAAGTGTATATA
131 AAAGTGTATATA
18884271 TGTG-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
18884335 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
66 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
18884400 AAAGTGTATATA
131 AAAGTGTATATA
18884412 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAATAAGGCCTAAT
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAAGGCCTAAT
18884477 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
65 GGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
18884542 GAAAGTGTATATA
130 GAAAGTGTATATA
* *
18884555 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAAATATATGATAAGGCCTAATG
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
18884620 GCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
66 GCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATG
18884685 TGAAAGTGTATATA
129 TGAAAGTGTATATA
*** * * * * * * *
18884699 TGTG-ACGGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
18884755 TCCCGAAGGG
Statistics
Matches: 466, Mismatches: 14, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
141 145 0.31
142 84 0.18
143 180 0.39
144 57 0.12
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (142 bp):
TGTGAATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATA
Found at i:18884930 original size:38 final size:37
Alignment explanation
Indices: 18884873--18884951 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
18884863 CTGAGCTCTA
* *
18884873 AAGACCCGATGACTACGTGTGG-GAATTTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-A-TTATGTCCGGGT
*
18884911 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
18884948 AAGA
1 AAGA
18884952 TTTCGTAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 15 0.41
38 21 0.57
39 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:18887488 original size:42 final size:42
Alignment explanation
Indices: 18887434--18887578 Score: 136
Period size: 42 Copynumber: 3.4 Consensus size: 42
18887424 TGCCAACATC
*
18887434 CCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGT
1 CCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGT
* * * * *
18887476 CCAGACAG-GGTCTTACACGAAAACATATAT-AATGCCAATGT
1 CCAGAC-GTGGTCTTACACGTAATCAAATATCGATGCCACTGT
* *
18887517 CCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC-GTT
1 -CCAGACGTGGTCTTACACGT-AATC-AAATATCGATGCC-ACTG-T
18887562 CCAGACGTGGTCTTACA
1 CCAGACGTGGTCTTACA
18887579 TGATAACTCA
Statistics
Matches: 81, Mismatches: 14, Indels: 14
0.74 0.13 0.13
Matches are distributed among these distances:
41 9 0.11
42 41 0.51
43 6 0.07
44 23 0.28
45 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.25
Consensus pattern (42 bp):
CCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGT
Found at i:18891354 original size:31 final size:31
Alignment explanation
Indices: 18891319--18891384 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 31
18891309 GGGACACGCC
18891319 GTGTGGGTAGGCCGTGTGGTCACACAAGCCT
1 GTGTGGGTAGGCCGTGTGGTCACACAAGCCT
*
18891350 GTGTGGGTAGGCCGTGTGGTCACACACGCCT
1 GTGTGGGTAGGCCGTGTGGTCACACAAGCCT
18891381 GTGT
1 GTGT
18891385 CCCTAACCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.14, C:0.23, G:0.39, T:0.24
Consensus pattern (31 bp):
GTGTGGGTAGGCCGTGTGGTCACACAAGCCT
Found at i:18892598 original size:42 final size:42
Alignment explanation
Indices: 18892492--18892613 Score: 138
Period size: 43 Copynumber: 2.9 Consensus size: 42
18892482 TACCATACCA
* * *
18892492 ATGCCATATCCTAGATATGGTCTTACATGTAATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* * *
18892534 ATGCCAATAGCCCAGATGTGGTCTTACACG-AAGTCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
* * *
18892577 ATGTCATATCCCAGACATGGTCTTACATGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
18892614 GTAACCCTAA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
42 32 0.48
43 34 0.52
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:18892951 original size:16 final size:16
Alignment explanation
Indices: 18892930--18892975 Score: 83
Period size: 16 Copynumber: 2.9 Consensus size: 16
18892920 AATTCAACCC
18892930 AAAAATTACATTTTGG
1 AAAAATTACATTTTGG
18892946 AAAAATTACATTTTGG
1 AAAAATTACATTTTGG
*
18892962 GAAAATTACATTTT
1 AAAAATTACATTTT
18892976 ACCCCTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.39
Consensus pattern (16 bp):
AAAAATTACATTTTGG
Found at i:18915525 original size:42 final size:42
Alignment explanation
Indices: 18915413--18915532 Score: 145
Period size: 43 Copynumber: 2.8 Consensus size: 42
18915403 TACCATACCA
* *
18915413 ATGCCATATCCTAGATATGGTCTTACATGTAATCTAGTGTCG
1 ATGCCATATCCTAGATATGGTCTTACAAGTAATCTAGTATCG
* * * *
18915455 ATGACAATAGCCCAGCTATGGTCTTACAAG-AAGTCTCA-TATCG
1 ATG-CCATATCCTAGATATGGTCTTACAAGTAA-TCT-AGTATCG
18915498 ATGCCATATCCTAGATATGGTCTTACAAGTAATCT
1 ATGCCATATCCTAGATATGGTCTTACAAGTAATCT
18915533 TAACAACCCT
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
42 30 0.47
43 33 0.52
44 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCTAGATATGGTCTTACAAGTAATCTAGTATCG
Found at i:18918186 original size:21 final size:20
Alignment explanation
Indices: 18918157--18918198 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
18918147 CGAAATGCAA
18918157 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
18918178 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
18918198 T
1 T
18918199 AAACATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.45, C:0.14, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:18919069 original size:22 final size:22
Alignment explanation
Indices: 18919041--18919084 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
18919031 GAAAGTAATC
18919041 AAAATTAATCAAGAATT-ATTAT
1 AAAATTAATCAA-AATTCATTAT
*
18919063 AAAATTAATTAAAATTCATTAT
1 AAAATTAATCAAAATTCATTAT
18919085 GTTAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (22 bp):
AAAATTAATCAAAATTCATTAT
Found at i:18920282 original size:53 final size:53
Alignment explanation
Indices: 18920215--18920340 Score: 182
Period size: 53 Copynumber: 2.4 Consensus size: 53
18920205 TTGGCGGACA
* *
18920215 ACCCCATTTTTATTGTCCTAGCAGACTATCCATGTTTAAT-GTCCTGGCAAACT
1 ACCCTATTTTTATTGTCCTAGCAGACTATCCATGTTT-ATCATCCTGGCAAACT
* *
18920268 ACCCTATTTTTATTGTCCTAGCAGACTATTCATGTTTATCATCCTGGCAGACT
1 ACCCTATTTTTATTGTCCTAGCAGACTATCCATGTTTATCATCCTGGCAAACT
* *
18920321 ACCCTGTGTTTATTGTCCTA
1 ACCCTATTTTTATTGTCCTA
18920341 ATAGACTCCA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
52 2 0.03
53 64 0.97
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.39
Consensus pattern (53 bp):
ACCCTATTTTTATTGTCCTAGCAGACTATCCATGTTTATCATCCTGGCAAACT
Found at i:18920285 original size:27 final size:26
Alignment explanation
Indices: 18920217--18920340 Score: 122
Period size: 26 Copynumber: 4.7 Consensus size: 26
18920207 GGCGGACAAC
*
18920217 CCCATTTTTATTGTCCTAGCAGACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
* * * *
18920243 TCCATGTTTAATGTCCTGGCAAACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
*
18920269 CCCTATTTTTATTGTCCTAGCAGACTA
1 CCC-ATGTTTATTGTCCTAGCAGACTA
** ** *
18920296 TTCATGTTTATCATCCTGGCAGACTA
1 CCCATGTTTATTGTCCTAGCAGACTA
*
18920322 CCCTGTGTTTATTGTCCTA
1 CCC-ATGTTTATTGTCCTA
18920341 ATAGACTCCA
Statistics
Matches: 74, Mismatches: 22, Indels: 3
0.75 0.22 0.03
Matches are distributed among these distances:
26 43 0.58
27 31 0.42
ACGTcount: A:0.22, C:0.25, G:0.14, T:0.40
Consensus pattern (26 bp):
CCCATGTTTATTGTCCTAGCAGACTA
Found at i:18925396 original size:26 final size:27
Alignment explanation
Indices: 18925367--18925418 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
18925357 GTGATTTTTA
*
18925367 TAGATTCACAGTGG-TTTTTTTTTTGG
1 TAGATTCACAGTGGATTTTTTATTTGG
*
18925393 TAGATTCATAGTGGATTTTTTATTTG
1 TAGATTCACAGTGGATTTTTTATTTG
18925419 AGATTTAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.19, C:0.06, G:0.21, T:0.54
Consensus pattern (27 bp):
TAGATTCACAGTGGATTTTTTATTTGG
Found at i:18926415 original size:28 final size:28
Alignment explanation
Indices: 18926375--18926431 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
18926365 TCAAGTTTTT
18926375 CCTACCTAACCTTAGCTACTTGATACTA
1 CCTACCTAACCTTAGCTACTTGATACTA
18926403 CCTACCTAACCTTAGCTACTTGATACTA
1 CCTACCTAACCTTAGCTACTTGATACTA
18926431 C
1 C
18926432 ATCTTTATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.28, C:0.33, G:0.07, T:0.32
Consensus pattern (28 bp):
CCTACCTAACCTTAGCTACTTGATACTA
Found at i:18931181 original size:28 final size:28
Alignment explanation
Indices: 18931141--18931210 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
18931131 ATAGTAAGTC
*
18931141 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTAT-ACAATCAAACT
*
18931169 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
18931197 CGCACACTTAGTGC
1 CGCACACTTAGTGC
18931211 CAATCTCATT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 38 0.97
29 1 0.03
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:18936468 original size:30 final size:30
Alignment explanation
Indices: 18936432--18936513 Score: 137
Period size: 30 Copynumber: 2.7 Consensus size: 30
18936422 TGAGAAAATG
*
18936432 ACATTTACATGTCCATACGGTATGTTTACA
1 ACATTTACATGTCCATACGGTAAGTTTACA
**
18936462 ACATTTACATGTCCATACGGTAAGTTTATG
1 ACATTTACATGTCCATACGGTAAGTTTACA
18936492 ACATTTACATGTCCATACGGTA
1 ACATTTACATGTCCATACGGTA
18936514 CGTTGACTTA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (30 bp):
ACATTTACATGTCCATACGGTAAGTTTACA
Found at i:18947650 original size:24 final size:22
Alignment explanation
Indices: 18947623--18947680 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
18947613 TTTCAATTTG
*
18947623 TTTTTCATTTTATTTTATTTTTA
1 TTTTTCATTTT-TTTTATCTTTA
18947646 TTTTTGCATTTCTTTTTATCTTTA
1 TTTTT-CATTT-TTTTTATCTTTA
*
18947670 TTTATCATTTT
1 TTTTTCATTTT
18947681 CTTAAAAGAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 1 0.03
23 10 0.32
24 19 0.61
25 1 0.03
ACGTcount: A:0.16, C:0.09, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTTCATTTTTTTTATCTTTA
Found at i:18961538 original size:23 final size:23
Alignment explanation
Indices: 18961484--18961587 Score: 79
Period size: 23 Copynumber: 4.4 Consensus size: 23
18961474 GAGCAATATT
* *
18961484 CGGTAAGCTCCTCTTGAACTGATGAA
1 CGGTAAGCT-CTATTGAGCTGA--AA
*
18961510 CAGTAAGCTCTATTGAGCTGAAA
1 CGGTAAGCTCTATTGAGCTGAAA
18961533 CGGTAAGCTCT-TTCGAGCTG-AA
1 CGGTAAGCTCTATT-GAGCTGAAA
* * *
18961555 CAGTATGCTC-ATACGAGCTGAAA
1 CGGTAAGCTCTAT-TGAGCTGAAA
*
18961578 TGGTAAGCTC
1 CGGTAAGCTC
18961588 CAATGAGATA
Statistics
Matches: 64, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
22 19 0.30
23 27 0.42
25 10 0.16
26 8 0.12
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (23 bp):
CGGTAAGCTCTATTGAGCTGAAA
Found at i:18961571 original size:22 final size:21
Alignment explanation
Indices: 18961506--18961576 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 21
18961496 CTTGAACTGA
*
18961506 TGAACAGTAAGCTCTATTGAGC
1 TGAACAGTAAGCTCTA-CGAGC
* *
18961528 TGAAACGGTAAGCTCTTTCGAGC
1 TG-AACAGTAAGCTC-TACGAGC
*
18961551 TGAACAGTATGCTCATACGAGC
1 TGAACAGTAAGCTC-TACGAGC
18961573 TGAA
1 TGAA
18961577 ATGGTAAGCT
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
22 22 0.55
23 17 0.43
24 1 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (21 bp):
TGAACAGTAAGCTCTACGAGC
Found at i:18965585 original size:43 final size:43
Alignment explanation
Indices: 18965524--18965672 Score: 135
Period size: 42 Copynumber: 3.5 Consensus size: 43
18965514 CAATGTCAAC
*
18965524 GTCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCT
1 GTCCCAGACAG-GGTCTTACATGTAATTCAATATCGATGCCTAT
** * * *
18965567 GTCCCAGACAGGGTCTTACA-CAAAATC-ATATACGATACCAAT
1 GTCCCAGACAGGGTCTTACATGTAATTCAATAT-CGATGCCTAT
* * *
18965609 GTCCCAGACATGGTCTTACATGTAAATCTCAA-ATCGAAGCCTGT
1 GTCCCAGACAGGGTCTTACATGT-AAT-TCAATATCGATGCCTAT
* *
18965653 GTCCCAGATACGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
18965673 CGATATTTCA
Statistics
Matches: 84, Mismatches: 16, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
41 4 0.05
42 30 0.36
43 18 0.21
44 27 0.32
45 4 0.05
46 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
GTCCCAGACAGGGTCTTACATGTAATTCAATATCGATGCCTAT
Found at i:18974072 original size:99 final size:100
Alignment explanation
Indices: 18973891--18974130 Score: 313
Period size: 99 Copynumber: 2.4 Consensus size: 100
18973881 TCTATTGTGA
* * *
18973891 GGTCGCATGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
* **
18973956 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * ** * *
18973991 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAA-T-TGGTCACGTGTGTA
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTA
*
18974054 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
65 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
18974090 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACC
18974131 AAATAGCTTT
Statistics
Matches: 120, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 35 0.29
99 45 0.38
100 1 0.01
101 39 0.32
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (100 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCGAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:18974130 original size:49 final size:49
Alignment explanation
Indices: 18973898--18974122 Score: 297
Period size: 49 Copynumber: 4.5 Consensus size: 49
18973888 TGAGGTCGCA
* * * * * *
18973898 TGTGTAGTACTAAGTGCTGGCTACTATGCGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-T-TGGTCACG
* * **
18973949 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCACG
*
18973999 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
* *
18974048 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
*
18974097 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
18974123 TGCGTACCAA
Statistics
Matches: 155, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 79 0.51
50 44 0.28
51 32 0.21
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACG
Found at i:18977697 original size:46 final size:46
Alignment explanation
Indices: 18977638--18977811 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
18977628 ACCTCTAGTA
* * *
18977638 GCCGATGCATGTCCCAAACATGTCTTACACTAGC-TTACGTCTCGAG
1 GCCGAAGCATGTCCCAAACATGTCTTACACTAGCACT-CGTCTCAAG
* * * *
18977684 GCTGAAGCATGTCCTAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGAAGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAAG
* *
18977730 GCCGATGCCATGTCCCAAACATGGTCTTACACT-GC-CTC-TCATAATATG
1 GCCGAAG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTC-TCA-A-G
* *
18977778 GCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GCCGAAGCATGTCCCAAACATGTCTTACACTAGC
18977812 TAACAGAAGT
Statistics
Matches: 107, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
45 2 0.02
46 57 0.53
47 31 0.29
48 17 0.16
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (46 bp):
GCCGAAGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAAG
Found at i:18989298 original size:17 final size:17
Alignment explanation
Indices: 18989276--18989311 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
18989266 AAATACTCGG
18989276 ATATCTTTATTAAGACC
1 ATATCTTTATTAAGACC
18989293 ATATCTTTATTAAGACC
1 ATATCTTTATTAAGACC
18989310 AT
1 AT
18989312 CCTAGAACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (17 bp):
ATATCTTTATTAAGACC
Found at i:18997940 original size:28 final size:28
Alignment explanation
Indices: 18997899--18997963 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
18997889 CGTGTCCCTG
**
18997899 ACCCGTGTCCTTCACACGACTTAGACAC
1 ACCCGTGTCCTTCACACGACCAAGACAC
*
18997927 GCCCGTGTCCTTCACACGACCAAGACAC
1 ACCCGTGTCCTTCACACGACCAAGACAC
18997955 ACCCGTGTC
1 ACCCGTGTC
18997964 GTTGCCCGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.23, C:0.42, G:0.17, T:0.18
Consensus pattern (28 bp):
ACCCGTGTCCTTCACACGACCAAGACAC
Found at i:19003361 original size:15 final size:15
Alignment explanation
Indices: 19003343--19003386 Score: 70
Period size: 15 Copynumber: 2.9 Consensus size: 15
19003333 GAAGCCCAGA
19003343 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
19003358 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
*
19003373 ATAAGGAAATCCAA
1 ATAAAGAAATCCAA
19003387 TTTACAGCAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.57, C:0.14, G:0.14, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:19009847 original size:40 final size:40
Alignment explanation
Indices: 19009799--19010025 Score: 409
Period size: 40 Copynumber: 5.7 Consensus size: 40
19009789 GCAAACACAT
* *
19009799 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
19009839 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
19009879 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
19009919 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
19009959 TTGCCTTCGGGTCTTAGCCCAGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
19009999 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
19010026 ATCCAATGCT
Statistics
Matches: 179, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:19025448 original size:40 final size:40
Alignment explanation
Indices: 19025365--19025627 Score: 307
Period size: 40 Copynumber: 6.6 Consensus size: 40
19025355 TTGAATGCTG
* * * * * *
19025365 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
19025405 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
19025445 TCCGGGTTAAGTCCCGAAGGCATTCGTGTGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
19025485 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
19025525 TCCGGGTCAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
19025565 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
19025604 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
19025628 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.18
40 154 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:19025647 original size:79 final size:80
Alignment explanation
Indices: 19025404--19025662 Score: 240
Period size: 80 Copynumber: 3.3 Consensus size: 80
19025394 AAGTGAATAT
* * * * * *
19025404 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTCAAGTCCCGAAGGCAT
*** * *
19025468 TCGTGTGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* *
19025484 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTCAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTCAAGTCCCGAAGGCATT
** ** *
19025549 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
19025564 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGG-CTATGTCCCGAAGGCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTC-AAGTCCCGAAGGCAT
* *
19025627 TTGAACGAGGAGCTAT
65 TCGAACGAGGAGCTAA
*
19025643 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
19025663 TACGTGATTT
Statistics
Matches: 154, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
78 15 0.10
79 47 0.31
80 92 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTCAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:19032873 original size:40 final size:40
Alignment explanation
Indices: 19032790--19033052 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
19032780 TTGAATGCTG
* * * * * *
19032790 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
19032830 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
19032870 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
19032910 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
19032950 TCCGGGTCAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
19032990 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
19033029 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
19033053 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:19033072 original size:79 final size:80
Alignment explanation
Indices: 19032829--19033087 Score: 249
Period size: 80 Copynumber: 3.3 Consensus size: 80
19032819 AAGTGAATAT
* * * * * *
19032829 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTCAAGTCCCGAAGGCAT
** * *
19032893 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* *
19032909 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTCAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTCAAGTCCCGAAGGCATT
** ** *
19032974 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
19032989 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGG-CTATGTCCCGAAGGCAT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTC-AAGTCCCGAAGGCAT
* *
19033052 TTGAACGAGGAGCTAT
65 TCGAACGAGGAGCTAA
*
19033068 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
19033088 TACGTGATTT
Statistics
Matches: 155, Mismatches: 21, Indels: 8
0.84 0.11 0.04
Matches are distributed among these distances:
78 15 0.10
79 47 0.30
80 93 0.60
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTCAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:19041276 original size:219 final size:219
Alignment explanation
Indices: 19040897--19041331 Score: 852
Period size: 219 Copynumber: 2.0 Consensus size: 219
19040887 ATATTCTACA
19040897 ATCAAACATCAAAATACATGCATACAATTCATGGGTAAATTTTTAAACATAAACCCTAACTCGAA
1 ATCAAACATCAAAATACATGCATACAATTCATGGGTAAATTTTTAAACATAAACCCTAACTCGAA
19040962 ATAATGGTACAAATAGGTAGACCGAGCTACGAGGATTTCAAAAATGTAAAGAACATTAAAAACGG
66 ATAATGGTACAAATAGGTAGACCGAGCTACGAGGATTTCAAAAATGTAAAGAACATTAAAAACGG
19041027 GGCTTGAATGCACTTACTATTGAGCTTGAAAGCTTGGAAAAACCCTAGCTATGGTGAACATACAA
131 GGCTTGAATGCACTTACTATTGAGCTTGAAAGCTTGGAAAAACCCTAGCTATGGTGAACATACAA
*
19041092 GTTTCGGCCAAGGAAGAAGATAGC
196 GTTTCAGCCAAGGAAGAAGATAGC
*
19041116 ATCAAACATCAAAATACATGCATACCATTCATGGGTAAATTTTTAAACATAAACCCTAACTCGAA
1 ATCAAACATCAAAATACATGCATACAATTCATGGGTAAATTTTTAAACATAAACCCTAACTCGAA
19041181 ATAATGGTACAAATAGGTAGACCGAGCTACGAGGATTTCAAAAATGTAAAGAACATTAAAAACGG
66 ATAATGGTACAAATAGGTAGACCGAGCTACGAGGATTTCAAAAATGTAAAGAACATTAAAAACGG
19041246 GGCTTGAATGCACTTACTATTGAGCTTGAAAGCTTGGAAAAACCCTAGCTATGGTGAACATACAA
131 GGCTTGAATGCACTTACTATTGAGCTTGAAAGCTTGGAAAAACCCTAGCTATGGTGAACATACAA
19041311 GTTTCAGCCAAGGAAGAAGAT
196 GTTTCAGCCAAGGAAGAAGAT
19041332 GGATGGTTAA
Statistics
Matches: 214, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
219 214 1.00
ACGTcount: A:0.41, C:0.17, G:0.18, T:0.23
Consensus pattern (219 bp):
ATCAAACATCAAAATACATGCATACAATTCATGGGTAAATTTTTAAACATAAACCCTAACTCGAA
ATAATGGTACAAATAGGTAGACCGAGCTACGAGGATTTCAAAAATGTAAAGAACATTAAAAACGG
GGCTTGAATGCACTTACTATTGAGCTTGAAAGCTTGGAAAAACCCTAGCTATGGTGAACATACAA
GTTTCAGCCAAGGAAGAAGATAGC
Found at i:19045830 original size:23 final size:23
Alignment explanation
Indices: 19045796--19045900 Score: 115
Period size: 23 Copynumber: 4.6 Consensus size: 23
19045786 TGAGCTGATG
19045796 AACAGTAAGCTCTATTGAGCTAA
1 AACAGTAAGCTCTATTGAGCTAA
* * *
19045819 AACGGTAAGCTCTTTTGAGCT-G
1 AACAGTAAGCTCTATTGAGCTAA
*
19045841 AACAGTAAGCTC-ATATGAGCTGA
1 AACAGTAAGCTCTAT-TGAGCTAA
* * *
19045864 AACGGTAAGCTCCAATGAGCTGAA
1 AACAGTAAGCTCTATTGAGCT-AA
19045888 AACAGTAAGCTCT
1 AACAGTAAGCTCT
19045901 TACGAGCTGA
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
21 1 0.01
22 17 0.25
23 36 0.54
24 13 0.19
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (23 bp):
AACAGTAAGCTCTATTGAGCTAA
Found at i:19045847 original size:45 final size:46
Alignment explanation
Indices: 19045794--19045908 Score: 146
Period size: 45 Copynumber: 2.5 Consensus size: 46
19045784 CCTGAGCTGA
***
19045794 TGAACAGTAAGCTCTAT-TGAGCTAAAACGGTAAGCTCTTTTGAGC
1 TGAACAGTAAGCTCTATATGAGCTAAAACGGTAAGCTCCAATGAGC
*
19045839 TGAACAGTAAGCTC-ATATGAGCTGAAACGGTAAGCTCCAATGAGC
1 TGAACAGTAAGCTCTATATGAGCTAAAACGGTAAGCTCCAATGAGC
*
19045884 TGAAAACAGTAAGCTCT-TACGAGCT
1 TG--AACAGTAAGCTCTATATGAGCT
19045909 GATATATTAG
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
44 2 0.03
45 40 0.66
47 19 0.31
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (46 bp):
TGAACAGTAAGCTCTATATGAGCTAAAACGGTAAGCTCCAATGAGC
Found at i:19046572 original size:21 final size:21
Alignment explanation
Indices: 19046530--19046572 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
19046520 GAACTTGTAT
* *
19046530 ATCTACCATTAAACTTTCAAA
1 ATCTACCATTAAACATTAAAA
*
19046551 ATCTTCCATTAAACATTAAAA
1 ATCTACCATTAAACATTAAAA
19046572 A
1 A
19046573 ACTCAAGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.21, G:0.00, T:0.33
Consensus pattern (21 bp):
ATCTACCATTAAACATTAAAA
Found at i:19060240 original size:21 final size:21
Alignment explanation
Indices: 19060214--19060265 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
19060204 ATTTGAGTAC
*
19060214 TTTTTTATTTCA-TTTTTTTA
1 TTTTTTATTTCAGTTTTTATA
*
19060234 TTATTTTAATTTTAGTTTTTATA
1 TT-TTTT-ATTTCAGTTTTTATA
19060257 TTTTTTATT
1 TTTTTTATT
19060266 GAATAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 2 0.07
21 7 0.26
22 9 0.33
23 9 0.33
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (21 bp):
TTTTTTATTTCAGTTTTTATA
Found at i:19068893 original size:22 final size:22
Alignment explanation
Indices: 19068868--19068912 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
19068858 TTGCGATTTC
*
19068868 TGTTAGTACACATTCTTGGTCA
1 TGTTAGTACACACTCTTGGTCA
19068890 TGTTAGTACACACTCTTGGTCA
1 TGTTAGTACACACTCTTGGTCA
19068912 T
1 T
19068913 ATTTGCTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (22 bp):
TGTTAGTACACACTCTTGGTCA
Found at i:19069084 original size:18 final size:18
Alignment explanation
Indices: 19069058--19069092 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
19069048 ACTCCCAATC
19069058 AATCCGATCTCTCGGCAA
1 AATCCGATCTCTCGGCAA
* *
19069076 AATCTGATCTCTTGGCA
1 AATCCGATCTCTCGGCA
19069093 TTTCAAGTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (18 bp):
AATCCGATCTCTCGGCAA
Found at i:19072805 original size:45 final size:45
Alignment explanation
Indices: 19072737--19072848 Score: 172
Period size: 45 Copynumber: 2.5 Consensus size: 45
19072727 TGAACATACT
* *
19072737 TCATTTGAATTCAT-CATTTCCTTTCCATGAATATAGGATATAGC
1 TCATTTGAATACATACATTTCCTTTCCATGAATACAGGATATAGC
* *
19072781 TCATTTGAATACTTACATTTCCTTTCCATGAATACAGGATATAGT
1 TCATTTGAATACATACATTTCCTTTCCATGAATACAGGATATAGC
*
19072826 TCATTGGAATACATACATTTCCT
1 TCATTTGAATACATACATTTCCT
19072849 CTTCTTTTCC
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
44 12 0.20
45 49 0.80
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (45 bp):
TCATTTGAATACATACATTTCCTTTCCATGAATACAGGATATAGC
Found at i:19075104 original size:26 final size:26
Alignment explanation
Indices: 19075075--19075182 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
19075065 TGATACAAAT
*
19075075 TGATAATGGGTTAAGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
19075101 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
19075127 TGTTAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19075153 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
19075179 TGAT
1 TGAT
19075183 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:19079320 original size:40 final size:40
Alignment explanation
Indices: 19079265--19079347 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
19079255 TTTGGCTACG
* *
19079265 GGCCATGATATAGGTA-TTCATAGAGGAGTTACCTTGGTTT
1 GGCCATGATATAGGTACTTCA-AAAGGAGTTACCTTGATTT
* *
19079305 GGCCATGGTATAGGTACTTCAAAATGAGTTACCTTGATTT
1 GGCCATGATATAGGTACTTCAAAAGGAGTTACCTTGATTT
19079345 GGC
1 GGC
19079348 TTCGGGCCAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 34 0.89
41 4 0.11
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (40 bp):
GGCCATGATATAGGTACTTCAAAAGGAGTTACCTTGATTT
Found at i:19080607 original size:43 final size:43
Alignment explanation
Indices: 19080511--19080608 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
19080501 ATGGCTTAAG
* *
19080511 ACACAGGCGTGTCTAGTGGCTGTGTGAGGCAGATGGTCTATTC
1 ACACAGGCGTGTCTAGTGGCCGTGTGAGGCACATGGTCTATTC
* * * * *
19080554 ATACGGGCGTGTCTGGTGGCCGTGTGAGGTACATGGTCTGTTC
1 ACACAGGCGTGTCTAGTGGCCGTGTGAGGCACATGGTCTATTC
*
19080597 ACACATGCGTGT
1 ACACAGGCGTGT
19080609 GACCCTTGAA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.16, C:0.19, G:0.36, T:0.29
Consensus pattern (43 bp):
ACACAGGCGTGTCTAGTGGCCGTGTGAGGCACATGGTCTATTC
Found at i:19086679 original size:28 final size:27
Alignment explanation
Indices: 19086603--19086681 Score: 97
Period size: 28 Copynumber: 2.9 Consensus size: 27
19086593 ATAACAGTAT
19086603 CGTGGCAAAGCCACCAGTATCA-AAATA
1 CGTGGCAAAGCCACCAGTA-CAGAAATA
* * *
19086630 TGTGGCTAAGCCACCAGAACAGCAAATA
1 CGTGGCAAAGCCACCAGTACAG-AAATA
*
19086658 CGTGGCAAAGCCACTAGTACAGAA
1 CGTGGCAAAGCCACCAGTACAGAA
19086682 CTTCCTCCAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 2 0.05
27 18 0.42
28 23 0.53
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.14
Consensus pattern (27 bp):
CGTGGCAAAGCCACCAGTACAGAAATA
Found at i:19091554 original size:49 final size:49
Alignment explanation
Indices: 19091498--19091628 Score: 147
Period size: 49 Copynumber: 2.7 Consensus size: 49
19091488 TATTGTGTGT
* *
19091498 CAGTGTAAGACCTATCTGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC-CTCGATAGATGAAAGA
* * ** * * * *
19091547 CAGTGTAAGACCTGTCTGGGACAAGAAATTGGCCTTGATATATGAAAGA
1 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGA
*
19091596 CAGTGTAAGACCTACCTGGGACATGGCATCGAC
1 CAGTGTAAGACCTATCTGGGACATGGCATCGAC
19091629 TTTAATGTGC
Statistics
Matches: 64, Mismatches: 17, Indels: 2
0.77 0.20 0.02
Matches are distributed among these distances:
48 1 0.02
49 63 0.98
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (49 bp):
CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATAGATGAAAGA
Found at i:19095543 original size:48 final size:48
Alignment explanation
Indices: 19095459--19095635 Score: 221
Period size: 48 Copynumber: 3.7 Consensus size: 48
19095449 ATATTGATGA
* * *
19095459 CATGTCCTAGACATGGTCTTACA-GGAAATCATATATCGATGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGG-GATCACATATCGATGCCAATGC
* * * * * * *
19095507 GATATCCCAGATATGGTTTTACATTGGATCACATATCAATGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
* *
19095555 CATGTCCTAGACATGGTCTAACATGGGATCACATATCGATGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
*
19095603 CATGTCCCATACATGGTCTTACATGGGATCACA
1 CATGTCCCAGACATGGTCTTACATGGGATCACA
19095636 CATAATTATG
Statistics
Matches: 106, Mismatches: 22, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
48 105 0.99
49 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGC
Found at i:19095594 original size:96 final size:96
Alignment explanation
Indices: 19095459--19095635 Score: 257
Period size: 96 Copynumber: 1.8 Consensus size: 96
19095449 ATATTGATGA
* * * *
19095459 CATGTCCTAGACATGGTCTTACAGGAAATCATATATCGATGCCAATGCGATATCCCAGATATGGT
1 CATGTCCTAGACATGGTCTAACAGGAAATCACATATCGATGCCAATGCCATATCCCAGACATGGT
* *
19095524 TTTACATTGGATCACATATCAATGCCAACGC
66 CTTACATGGGATCACATATCAATGCCAACGC
* * *
19095555 CATGTCCTAGACATGGTCTAACATGG-GATCACATATCGATGCCAATGCCATGTCCCATACATGG
1 CATGTCCTAGACATGGTCTAACA-GGAAATCACATATCGATGCCAATGCCATATCCCAGACATGG
19095619 TCTTACATGGGATCACA
65 TCTTACATGGGATCACA
19095636 CATAATTATG
Statistics
Matches: 71, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
96 69 0.97
97 2 0.03
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (96 bp):
CATGTCCTAGACATGGTCTAACAGGAAATCACATATCGATGCCAATGCCATATCCCAGACATGGT
CTTACATGGGATCACATATCAATGCCAACGC
Found at i:19121339 original size:43 final size:42
Alignment explanation
Indices: 19121287--19121407 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 42
19121277 ATGTTATCAC
* * *
19121287 ATATCGATGCCATTGTCCTAGACATGGTCTTATACGAAAT-CA
1 ATAT-GATGCCAATGTCCCAGACATGGTCTTACACGAAATCCA
*
19121329 TATAATGATGCCAATGTCCCAGACATGGTCTTACACGTAATCGCA
1 -AT-ATGATGCCAATGTCCCAGACATGGTCTTACACGAAATC-CA
*
19121374 ATATGATGACAATGTCCCAGACATGGTCTTACAC
1 ATATGATGCCAATGTCCCAGACATGGTCTTACAC
19121408 ACAATCACGT
Statistics
Matches: 70, Mismatches: 5, Indels: 6
0.86 0.06 0.07
Matches are distributed among these distances:
43 64 0.91
44 4 0.06
45 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (42 bp):
ATATGATGCCAATGTCCCAGACATGGTCTTACACGAAATCCA
Found at i:19125396 original size:50 final size:50
Alignment explanation
Indices: 19125342--19125443 Score: 132
Period size: 50 Copynumber: 2.0 Consensus size: 50
19125332 TAACACCATG
* * *
19125342 TAAATACTTACCTATACAACCGAATATACAAGGTCCAATATATCATCTCA
1 TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
*** * *
19125392 TAAATACTTACATATATGGCCGAATACACAAGGTTCATTATATCATCACA
1 TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
19125442 TA
1 TA
19125444 TGGCCTAATA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (50 bp):
TAAATACTTACATATACAACCGAATACACAAGGTCCAATATATCATCACA
Found at i:19129555 original size:44 final size:44
Alignment explanation
Indices: 19129495--19129617 Score: 142
Period size: 44 Copynumber: 2.8 Consensus size: 44
19129485 ATATGTGTTG
* * *
19129495 ATGCATGTCCCGGACATGTCTTACACTAGCACAAATCTTA-GCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGCACAAATC-GAGGCCA
** *
19129539 ATGCATGTCCCAGACATGTCTTACACTGGCTATCCTTATCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-A--CAAATCGAGGCCA
19129586 ATGCATG-CCCAGACATGTCTTACACTGGCACA
1 ATGCATGTCCCAGACATGTCTTACACTGGCACA
19129618 CAAGAAATTC
Statistics
Matches: 68, Mismatches: 7, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
43 1 0.01
44 28 0.41
45 2 0.03
46 23 0.34
47 14 0.21
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACAAATCGAGGCCA
Found at i:19132600 original size:68 final size:64
Alignment explanation
Indices: 19132490--19132742 Score: 219
Period size: 68 Copynumber: 3.9 Consensus size: 64
19132480 ATATAGATGG
** * * * * *
19132490 TATGTAGCTAGGTCACATGTTTGGTGCTGA-GTGCACATCATGT-GTAAAAGAGAGCTACAAGAC
1 TATGTAGCTAGGTCACATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCTAC--GAG
19132553 ATTA
62 A-TA
* *
19132557 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGATACGAGATA
1 T-ATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
* * * * *
19132622 TATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCACATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
19132687 TA
63 TA
* * *
19132689 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAGC
19132743 CAAAATTTTG
Statistics
Matches: 154, Mismatches: 24, Indels: 20
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 25 0.16
65 3 0.02
66 25 0.16
67 33 0.21
68 47 0.31
69 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:19139301 original size:55 final size:55
Alignment explanation
Indices: 19139181--19139290 Score: 150
Period size: 55 Copynumber: 2.0 Consensus size: 55
19139171 GCCCATCTGA
* * *
19139181 AACACTGACTTTAAAGCAAGGCCATGACACACGCCCGTGTGGTCTGCCCGTGTAC
1 AACACTGACTTTAAAGCAAGGCCATGACACACACCCGTGTGGCCTACCCGTGTAC
* **
19139236 AACACTGACTTTATAA-CACGGCCATGACACACACCTTTGTGGCCTACCCGTGTAC
1 AACACTGACTTTA-AAGCAAGGCCATGACACACACCCGTGTGGCCTACCCGTGTAC
19139291 TCAACTGACT
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
55 46 0.96
56 2 0.04
ACGTcount: A:0.26, C:0.32, G:0.20, T:0.22
Consensus pattern (55 bp):
AACACTGACTTTAAAGCAAGGCCATGACACACACCCGTGTGGCCTACCCGTGTAC
Found at i:19140393 original size:47 final size:47
Alignment explanation
Indices: 19140191--19140508 Score: 249
Period size: 47 Copynumber: 6.7 Consensus size: 47
19140181 TGGATAAATT
* * *
19140191 GCCGATGCCATGTCCCAGACAAGGTCTCACACAGGCTATCATCATCGAG
1 GCCGATG-CATGTCCCAGAC-ATGTCTTACACTGGCTATCATCATCGAG
* * * * *
19140240 GCCGATGCCATGTCCCAGACATGGTCTTATACTAGCTCTCATATATAC-AT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCAT-CAT-CGAG
* * * *
19140290 GCTGATGCATGTCCCGGACATGTCTTACACTAGC-A-CGA-C-TCTTA-
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATC-ATCATC-GAG
** *
19140334 GTTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAG
* * *
19140381 GCCGATGCATGTCCCAGACATGTCTTACATTGGC-ACTCATC-TCTAC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTA-TCATCATCGAG
* * * * * *
19140427 GCCGATTCCATCTCCCAGACATTGTCTTACACTGGCTCTAATAAT-GTG
1 GCCGA-TGCATGTCCCAGACA-TGTCTTACACTGGCTATCATCATCGAG
*
19140475 GCCGATGCAAGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC
19140509 ACACGAGAAA
Statistics
Matches: 217, Mismatches: 36, Indels: 35
0.75 0.12 0.12
Matches are distributed among these distances:
43 1 0.00
44 31 0.14
45 3 0.01
46 27 0.12
47 63 0.29
48 34 0.16
49 48 0.22
50 9 0.04
51 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCATCGAG
Found at i:19140482 original size:141 final size:140
Alignment explanation
Indices: 19140191--19140508 Score: 345
Period size: 141 Copynumber: 2.2 Consensus size: 140
19140181 TGGATAAATT
* * *
19140191 GCCGATGCCATGTCCCAGACAAGGTCTCACACAGGCTATCATCATCGAGGCCGATGCCATGTCCC
1 GCCGATG-CATGTCCCAGAC-ACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCC
* * * * * *
19140256 AGACATGGTCTTATACTAGCTCTCATATATACATGCTGATGCATGTCCCGGACATGTCTTACACT
64 AGACATGGTCTTACACTAGCACTCATATATACA-GCCGATCCATCTCCCAGACATGTCTTACACT
* *
19140321 AGCACGACTCTTA
128 AGCACGAATATTA
**
19140334 GTTGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATG-CATGTCCCAG
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAG
* * * * *
19140398 ACAT-GTCTTACATTGGCACTCATCTCTAC-GCCGATTCCATCTCCCAGACATTGTCTTACACTG
66 ACATGGTCTTACACTAGCACTCATATATACAGCCGA-TCCATCTCCCAGACA-TGTCTTACACTA
* * *
19140461 GCTCTAATAATGTG
129 GCACGAAT-AT-TA
* *
19140475 GCCGATGCAAGTCCCAGACATGTCTTACACTGGC
1 GCCGATGCATGTCCCAGACACGTCTTACACTGGC
19140509 ACACGAGAAA
Statistics
Matches: 146, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
137 4 0.03
138 12 0.08
139 35 0.24
140 15 0.10
141 63 0.43
142 12 0.08
143 5 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (140 bp):
GCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAG
ACATGGTCTTACACTAGCACTCATATATACAGCCGATCCATCTCCCAGACATGTCTTACACTAGC
ACGAATATTA
Found at i:19160184 original size:40 final size:39
Alignment explanation
Indices: 19160100--19160284 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
19160090 TTGAATGATG
* * * *
19160100 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
19160140 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
19160180 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
19160219 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
19160260 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
19160285 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 34 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:19160236 original size:79 final size:81
Alignment explanation
Indices: 19160100--19160282 Score: 214
Period size: 79 Copynumber: 2.3 Consensus size: 81
19160090 TTGAATGATG
* *
19160100 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
*
19160164 TGTGCGAGATACTA-A
66 TGTGCAAGATACTATA
* * * **
19160179 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
19160241 TTTGTGCAAGTTACTATA
64 TTTGTGCAAGATACTATA
* *
19160259 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
19160283 TGAACGAGGA
Statistics
Matches: 88, Mismatches: 11, Indels: 8
0.82 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCAAGATACTATA
Found at i:19160306 original size:79 final size:79
Alignment explanation
Indices: 19160153--19160317 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
19160143 GGACTAAGAT
* * ** *
19160153 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
*
19160218 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
19160232 CCGAAGGCATTTGTGCAAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCAAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
* *
19160295 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
19160311 CCGAAGG
1 CCGAAGG
19160318 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 46 0.64
80 24 0.33
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:19168180 original size:39 final size:40
Alignment explanation
Indices: 19168082--19168306 Score: 251
Period size: 40 Copynumber: 5.7 Consensus size: 40
19168072 TTGAATGATG
* * * * * *
19168082 TCCGGGCTAAGTCCCGAAGTC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
19168122 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
19168162 TTCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
19168201 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
19168241 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
19168282 -CCGGGCTATGTTCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
19168307 AACGAGGAGC
Statistics
Matches: 161, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
39 33 0.20
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:19171957 original size:42 final size:42
Alignment explanation
Indices: 19171898--19171981 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
19171888 CGTACAGGGC
*
19171898 TTTTGGACGTCGTAACTCGGTCGAAACAAATTTGTACGCATA
1 TTTTGGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
*
19171940 TTTTGGATGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
1 TTTTGGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
19171982 GCTTCCAAGC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (42 bp):
TTTTGGACGTCGTAACTCGGTCGAAACAAATTTGTAAGCATA
Found at i:19173815 original size:29 final size:28
Alignment explanation
Indices: 19173780--19173858 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
19173770 GGGTATTTTA
19173780 ACGATTTGGCTTTAGGCCATGCATATCGG
1 ACGATTTGGCTTT-GGCCATGCATATCGG
* *
19173809 ATGATTTGGCTTTGAGCCATGCATATTGG
1 ACGATTTGGCTTTG-GCCATGCATATCGG
*
19173838 ACGATTTGGCTTCGGGCCATG
1 ACGATTTGGCTT-TGGCCATG
19173859 ATAATAGTTC
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
28 1 0.02
29 42 0.95
30 1 0.02
ACGTcount: A:0.19, C:0.19, G:0.29, T:0.33
Consensus pattern (28 bp):
ACGATTTGGCTTTGGCCATGCATATCGG
Found at i:19181729 original size:16 final size:16
Alignment explanation
Indices: 19181708--19181742 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
19181698 ATGAATTAAG
19181708 TTATTCACCTATGAGC
1 TTATTCACCTATGAGC
19181724 TTATTCACCTATGAGC
1 TTATTCACCTATGAGC
19181740 TTA
1 TTA
19181743 CTAAGCTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.11, T:0.40
Consensus pattern (16 bp):
TTATTCACCTATGAGC
Found at i:19181751 original size:16 final size:16
Alignment explanation
Indices: 19181714--19181761 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
19181704 TAAGTTATTC
* *
19181714 ACCTATGAGCTTATTC
1 ACCTATGAGCTTACTA
19181730 ACCTATGAGCTTACTA
1 ACCTATGAGCTTACTA
*
19181746 AGCTATGAAGCTTACT
1 ACCTATG-AGCTTACT
19181762 TTGTGTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 20 0.71
17 8 0.29
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (16 bp):
ACCTATGAGCTTACTA
Found at i:19182830 original size:28 final size:28
Alignment explanation
Indices: 19182810--19182865 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
19182800 GATTTATGAG
19182810 AATGAATGTTTTATGTTTGATAAATGTA
1 AATGAATGTTTTATGTTTGATAAATGTA
19182838 AATGAATGTTTTATGTTTGATAAATGTA
1 AATGAATGTTTTATGTTTGATAAATGTA
19182866 TGCTATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (28 bp):
AATGAATGTTTTATGTTTGATAAATGTA
Found at i:19183926 original size:20 final size:20
Alignment explanation
Indices: 19183901--19183938 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19183891 AAAGTGAGAA
*
19183901 TTTATTTTCTAAGTATAAAT
1 TTTATTTTCTAAGAATAAAT
*
19183921 TTTATTTTTTAAGAATAA
1 TTTATTTTCTAAGAATAA
19183939 CAAATTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.03, G:0.05, T:0.55
Consensus pattern (20 bp):
TTTATTTTCTAAGAATAAAT
Found at i:19187816 original size:30 final size:33
Alignment explanation
Indices: 19187780--19187857 Score: 99
Period size: 35 Copynumber: 2.4 Consensus size: 33
19187770 CATTCATTCA
19187780 TAATTTATTT-TTA-ATGCTTTA-TTTTTTATG
1 TAATTTATTTGTTATATGCTTTATTTTTTTATG
* *
19187810 TAATTTATTTGTTATGTGTGTTTTATTTTTTTATG
1 TAATTTATTTGTTA--TATGCTTTATTTTTTTATG
19187845 TAATTTATTTGTT
1 TAATTTATTTGTT
19187858 GTGTGTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
30 10 0.24
31 3 0.07
34 6 0.15
35 22 0.54
ACGTcount: A:0.21, C:0.01, G:0.10, T:0.68
Consensus pattern (33 bp):
TAATTTATTTGTTATATGCTTTATTTTTTTATG
Found at i:19187861 original size:33 final size:34
Alignment explanation
Indices: 19187797--19187867 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 34
19187787 TTTTTAATGC
19187797 TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
1 TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
19187831 TTTATTTTTTTATGTAATTTATTTG-T-TGTGTGT
1 TTTA-TTTTTTATGTAATTTATTTGTTATGTGTGT
19187864 TTTA
1 TTTA
19187868 GGTTGGTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
33 11 0.31
34 5 0.14
35 20 0.56
ACGTcount: A:0.17, C:0.00, G:0.14, T:0.69
Consensus pattern (34 bp):
TTTATTTTTTATGTAATTTATTTGTTATGTGTGT
Found at i:19189814 original size:43 final size:42
Alignment explanation
Indices: 19189758--19189870 Score: 111
Period size: 43 Copynumber: 2.6 Consensus size: 42
19189748 AGCTCATACA
* * * ** *
19189758 ATGCCATATCCCAGATATGGTCTTACATGTTATC-ACATATCG
1 ATGCCATGTCCCAGACATGGTCTTACAAGAAATCGA-ATAACG
* * *
19189800 ATGCCACTGTCCCAGGCAGGGTCTTACAAGAAATCGATTAACG
1 ATGCCA-TGTCCCAGACATGGTCTTACAAGAAATCGAATAACG
19189843 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCC-ATGTCCCAGACATGGTCTTACA
19189871 CATAATCTCA
Statistics
Matches: 57, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
42 6 0.11
43 49 0.86
44 2 0.04
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACAAGAAATCGAATAACG
Found at i:19190395 original size:119 final size:120
Alignment explanation
Indices: 19190175--19190416 Score: 459
Period size: 119 Copynumber: 2.0 Consensus size: 120
19190165 CTAAATCTGA
19190175 TTTCTTTCATTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
1 TTTCTTTCATTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
19190240 CATCCAAAACACACAATTTGGGACATTTTACACATTAACCCCTATAATTTCACAT
66 CATCCAAAACACACAATTTGGGACATTTTACACATTAACCCCTATAATTTCACAT
*
19190295 TTTC-TTCGTTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
1 TTTCTTTCATTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
*
19190359 CATGCAAAACACACAATTTGGGACATTTTACACATTAACCCCTATAATTTCACAT
66 CATCCAAAACACACAATTTGGGACATTTTACACATTAACCCCTATAATTTCACAT
19190414 TTT
1 TTT
19190417 TTCAATTTAG
Statistics
Matches: 120, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
119 116 0.97
120 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.05, T:0.41
Consensus pattern (120 bp):
TTTCTTTCATTCTTGATCTATATGAATTCAAAATTAACTCTTTTATTCCTCAATTCATTCAATTT
CATCCAAAACACACAATTTGGGACATTTTACACATTAACCCCTATAATTTCACAT
Found at i:19193583 original size:47 final size:48
Alignment explanation
Indices: 19193529--19193644 Score: 144
Period size: 47 Copynumber: 2.4 Consensus size: 48
19193519 CACAATCGAT
* *
19193529 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTTATC-CCG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
* * * * * *
19193576 AAGTACCTACACCATAGTCCATAGCCAAATCAAGGTAACTCCTCTATG
1 AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
*
19193624 AAATACCTATACCATGGCCCG
1 AAGTACCTATACCATGGCCCG
19193645 CAGTCAAGTT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
47 38 0.69
48 17 0.31
ACGTcount: A:0.34, C:0.30, G:0.15, T:0.22
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCCGTAGCCAAATCAAGGTAACTCATCTACG
Found at i:19195495 original size:14 final size:14
Alignment explanation
Indices: 19195476--19195510 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
19195466 GACATTTTTT
*
19195476 TTCTAATGATACTA
1 TTCTAACGATACTA
19195490 TTCTAACGATACTA
1 TTCTAACGATACTA
*
19195504 TTTTAAC
1 TTCTAAC
19195511 ATTTAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:19196777 original size:47 final size:47
Alignment explanation
Indices: 19196714--19196804 Score: 130
Period size: 47 Copynumber: 1.9 Consensus size: 47
19196704 CAACAATACA
* *
19196714 ACATTAAAACACT-AAAATTGGAACAAAATTTGTAATATAAATTAAAT
1 ACATTAAAACACTAAAAATTCGAA-AAAACTTGTAATATAAATTAAAT
* *
19196761 ACATTACAACATTAAAAATTCGAAAAAACTTGTAATATAAATTA
1 ACATTAAAACACTAAAAATTCGAAAAAACTTGTAATATAAATTA
19196805 GGCACATTGG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
47 30 0.77
48 9 0.23
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (47 bp):
ACATTAAAACACTAAAAATTCGAAAAAACTTGTAATATAAATTAAAT
Found at i:19199588 original size:40 final size:40
Alignment explanation
Indices: 19199533--19199680 Score: 233
Period size: 40 Copynumber: 3.7 Consensus size: 40
19199523 ACTTGATATC
19199533 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
19199573 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* * * * *
19199613 TCGCACACTAAGTGTCATATATAGCCGAAGTTATGTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
* *
19199653 TCGCACACTAAGTGCCACAAATAGCCGA
1 TCGCACACTAAGTGCCATACATAGCCGA
19199681 TTTATCGTCA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAA
Found at i:19201047 original size:30 final size:30
Alignment explanation
Indices: 19201012--19201079 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
19201002 ACACCAAGGG
19201012 ACACACGGCTACGTAACCTAACCGTGTGTC
1 ACACACGGCTACGTAACCTAACCGTGTGTC
19201042 ACACACGGCTACGTAACCTAACCGTGTGTC
1 ACACACGGCTACGTAACCTAACCGTGTGTC
19201072 ACACACGG
1 ACACACGG
19201080 ATGAGACACA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.28, C:0.34, G:0.21, T:0.18
Consensus pattern (30 bp):
ACACACGGCTACGTAACCTAACCGTGTGTC
Found at i:19205361 original size:27 final size:27
Alignment explanation
Indices: 19205331--19205508 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
19205321 ATATTGAGTC
* * * *
19205331 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
19205358 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
19205385 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
19205413 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
19205440 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
19205467 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
19205494 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
19205509 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:19205470 original size:82 final size:81
Alignment explanation
Indices: 19205352--19205507 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
19205342 TGCTATATAA
* *
19205352 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
19205417 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
19205434 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
19205498 CACTTAGTGC
65 CACTTAGTGC
19205508 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:19219924 original size:13 final size:13
Alignment explanation
Indices: 19219906--19219930 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19219896 ATATTCTGCC
19219906 TAACATATATAAT
1 TAACATATATAAT
19219919 TAACATATATAA
1 TAACATATATAA
19219931 AAAAATATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.00, T:0.36
Consensus pattern (13 bp):
TAACATATATAAT
Found at i:19220180 original size:15 final size:15
Alignment explanation
Indices: 19220160--19220209 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
19220150 ATAGTACAAT
19220160 TATACAATTTTACTA
1 TATACAATTTTACTA
* * *
19220175 TATACATAGTATAAT-
1 TATACA-ATTTTACTA
19220190 TATACAATTTTACTA
1 TATACAATTTTACTA
19220205 TATAC
1 TATAC
19220210 CAAATCACAT
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
14 5 0.19
15 17 0.63
16 5 0.19
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (15 bp):
TATACAATTTTACTA
Found at i:19220182 original size:30 final size:30
Alignment explanation
Indices: 19220148--19220209 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
19220138 AACATTCAAG
19220148 ACATAGTACAATTATACAATTTTACTATAT
1 ACATAGTACAATTATACAATTTTACTATAT
*
19220178 ACATAGTATAATTATACAATTTTACTATAT
1 ACATAGTACAATTATACAATTTTACTATAT
19220208 AC
1 AC
19220210 CAAATCACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.44, C:0.13, G:0.03, T:0.40
Consensus pattern (30 bp):
ACATAGTACAATTATACAATTTTACTATAT
Found at i:19221571 original size:31 final size:31
Alignment explanation
Indices: 19221528--19221643 Score: 171
Period size: 31 Copynumber: 3.8 Consensus size: 31
19221518 TCAATCTCAG
* *
19221528 CATAT-ACTGGGCCGAAGCCTTTACATTATC
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
19221558 CATGTCACTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
*
19221589 CATATCATTGGGCCGAAGCCTTTTCATTATT
1 CATATCACTGGGCCGAAGCCTTTTCATTATT
* *
19221620 CATATCACTAGGCCGAAGCTTTTT
1 CATATCACTGGGCCGAAGCCTTTT
19221644 ACTGTAACAA
Statistics
Matches: 77, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 4 0.05
31 73 0.95
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.34
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATTATT
Found at i:19221878 original size:25 final size:26
Alignment explanation
Indices: 19221850--19221958 Score: 138
Period size: 26 Copynumber: 4.3 Consensus size: 26
19221840 CTGGAGGCCT
19221850 AGCCTCTTTT-GAT-AACTGGGGCAAA
1 AGCC-CTTTTCGATAAACTGGGGCAAA
*
19221875 AGCCCTTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTCGATAAACTGGGGCAAA
*
19221901 AGCCCTTTTCGGTAAACTGGGGC-AA
1 AGCCCTTTTCGATAAACTGGGGCAAA
* *
19221926 AGCCCTTTTCGGT-AACTGGGGC-AT
1 AGCCCTTTTCGATAAACTGGGGCAAA
19221950 AGCCCTTTT
1 AGCCCTTTT
19221959 GCACTTCCTC
Statistics
Matches: 79, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
24 24 0.30
25 22 0.28
26 33 0.42
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (26 bp):
AGCCCTTTTCGATAAACTGGGGCAAA
Found at i:19221899 original size:26 final size:24
Alignment explanation
Indices: 19221836--19221958 Score: 131
Period size: 26 Copynumber: 4.9 Consensus size: 24
19221826 GCTTTATCAT
**
19221836 ATAACTGGAGGCCTAGCCTCTTTT-G
1 ATAACTGG-GGCAAAGCC-CTTTTCG
*
19221861 ATAACTGGGGCAAAAGCCCTTTTTG
1 ATAACTGGGGC-AAAGCCCTTTTCG
19221886 ATAAACTGGGGCAAAAGCCCTTTTCG
1 AT-AACTGGGGC-AAAGCCCTTTTCG
*
19221912 GTAAACTGGGGCAAAGCCCTTTTCG
1 AT-AACTGGGGCAAAGCCCTTTTCG
* *
19221937 GTAACTGGGGCATAGCCCTTTT
1 ATAACTGGGGCAAAGCCCTTTT
19221959 GCACTTCCTC
Statistics
Matches: 90, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
24 27 0.30
25 30 0.33
26 33 0.37
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCAAAGCCCTTTTCG
Found at i:19222128 original size:25 final size:25
Alignment explanation
Indices: 19222091--19222138 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
19222081 ATAATTAAAC
* * *
19222091 CCTAGGGGTAAAATGGTTATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
19222116 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
19222139 CATATTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:19224347 original size:43 final size:42
Alignment explanation
Indices: 19224204--19224351 Score: 115
Period size: 43 Copynumber: 3.5 Consensus size: 42
19224194 CAATGTAACA
* * * * *
19224204 TCCCATACGTGGTCTTACATAC-AATCACATATCGATGTCACTA
1 TCCCAAACGTGGTCTTAC--ACGAATCAAATATCGATGCCAATG
* * *
19224247 TCCCAGACAG-GGTCTTACACGAATCAAATA-CAATTCCAATG
1 TCCCAAAC-GTGGTCTTACACGAATCAAATATCGATGCCAATG
* * * * *
19224288 T-CCTAGCATGGTCTTACAGGTAATCATATATCGATGCCAATG
1 TCCCAAACGTGGTCTTACACG-AATCAAATATCGATGCCAATG
19224330 TCCCAAACGTGGTCTTACACGA
1 TCCCAAACGTGGTCTTACACGA
19224352 GAACAGATAT
Statistics
Matches: 80, Mismatches: 19, Indels: 13
0.71 0.17 0.12
Matches are distributed among these distances:
40 13 0.16
41 17 0.21
42 19 0.24
43 30 0.38
44 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (42 bp):
TCCCAAACGTGGTCTTACACGAATCAAATATCGATGCCAATG
Found at i:19224897 original size:15 final size:15
Alignment explanation
Indices: 19224874--19224903 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19224864 TCAAAAATTC
19224874 TAATACAAAACATAT
1 TAATACAAAACATAT
*
19224889 TAATCCAAAACATAT
1 TAATACAAAACATAT
19224904 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:19228494 original size:46 final size:45
Alignment explanation
Indices: 19228427--19228591 Score: 154
Period size: 46 Copynumber: 3.6 Consensus size: 45
19228417 TGTGCTAGTA
* *
19228427 TAAGACATGTCTGAGACATGCATCAGCCACAGCATGAAAGCCAGTG
1 TAAGACATGTCTGCGACATGCATCAGCCAGAG-ATGAAAGCCAGTG
* **
19228473 TAAGACATGTCTGCGACATGCATCGGTCTTGAGAT-ATTTAAGCCAGTG
1 TAAGACATGTCTGCGACATGCATCAG-CCAGAGATGA---AAGCCAGTG
* * * * *
19228521 TAAGACATGTTTGCGACATGCATC-GGCATTGAGACGAGAGCTAGTG
1 TAAGACATGTCTGCGACATGCATCAGCCA--GAGATGAAAGCCAGTG
*
19228567 TAAGACATGTCTGGGACATGCATCA
1 TAAGACATGTCTGCGACATGCATCA
19228592 TCCTCGCAAT
Statistics
Matches: 97, Mismatches: 14, Indels: 15
0.77 0.11 0.12
Matches are distributed among these distances:
45 1 0.01
46 55 0.57
47 4 0.04
48 36 0.37
49 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (45 bp):
TAAGACATGTCTGCGACATGCATCAGCCAGAGATGAAAGCCAGTG
Found at i:19228761 original size:49 final size:49
Alignment explanation
Indices: 19228563--19228762 Score: 130
Period size: 49 Copynumber: 4.2 Consensus size: 49
19228553 GACGAGAGCT
* * * * *
19228563 AGTGTAAGACATGTCTGGGACAT-GCATCATCCTCGCAATAT-ACAAGCT
1 AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGA-AAGCC
* * * * *** *
19228611 AGTGTAAGACCTGTCTAAGACATGGCATAAG-CT---TGT-TGTCTGTC
1 AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
* ** * *
19228655 AGTGTAAGACTTGTCTGGGACATGGCATC-GACAC-CAATAGATGAGAGCC
1 AGTGTAAGACTTGTCTAGGACATGGCATCAG-C-CTCGCTATATGAAAGCC
* *
19228704 AATATAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
1 AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
19228753 AGTGTAAGAC
1 AGTGTAAGAC
19228763 CATGTTTGGG
Statistics
Matches: 110, Mismatches: 31, Indels: 21
0.68 0.19 0.13
Matches are distributed among these distances:
43 1 0.01
44 27 0.25
45 1 0.01
46 1 0.01
48 24 0.22
49 55 0.50
50 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.25
Consensus pattern (49 bp):
AGTGTAAGACTTGTCTAGGACATGGCATCAGCCTCGCTATATGAAAGCC
Found at i:19235993 original size:12 final size:12
Alignment explanation
Indices: 19235976--19236000 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
19235966 ACAACACATA
19235976 TTCAGAAAAATC
1 TTCAGAAAAATC
19235988 TTCAGAAAAATC
1 TTCAGAAAAATC
19236000 T
1 T
19236001 GATATCTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (12 bp):
TTCAGAAAAATC
Found at i:19237769 original size:72 final size:72
Alignment explanation
Indices: 19237652--19237796 Score: 281
Period size: 72 Copynumber: 2.0 Consensus size: 72
19237642 TTGTAAGTGG
19237652 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
1 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
19237717 TTGGATT
66 TTGGATT
*
19237724 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAATTAAT
1 AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
19237789 TTGGATT
66 TTGGATT
19237796 A
1 A
19237797 TCGTAGATAG
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 72 1.00
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (72 bp):
AAATGGAAGCATGTCACTATGGATTTTCTTTCAAGGTTGCCATTGACTTTGAAAAAAAAAATAAT
TTGGATT
Found at i:19241294 original size:58 final size:58
Alignment explanation
Indices: 19241230--19241381 Score: 157
Period size: 57 Copynumber: 2.6 Consensus size: 58
19241220 CTATTGACCT
* * * *
19241230 TGTTACAAAAAGGATTTAGCCCGGA-TGGGTAATCCTGATTTAATCCC-TCTCGATCATA
1 TGTTACAAAAAGGATTTAGCCTGGACT-GGTAATCCTGAATTAAGCCCTTCT-GAGCATA
** * * * *
19241288 TGTTACAATTAGGGTTTAACCTGGACTGGTAATCCT-AATTGAGCTCTTCTGAGCATA
1 TGTTACAAAAAGGATTTAGCCTGGACTGGTAATCCTGAATTAAGCCCTTCTGAGCATA
* *
19241345 CGTTACATAAAGGATTTAGCCTGGACTGGTAATCCTG
1 TGTTACAAAAAGGATTTAGCCTGGACTGGTAATCCTG
19241382 TAATACAACC
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
57 42 0.56
58 32 0.43
59 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (58 bp):
TGTTACAAAAAGGATTTAGCCTGGACTGGTAATCCTGAATTAAGCCCTTCTGAGCATA
Found at i:19254209 original size:4 final size:4
Alignment explanation
Indices: 19254200--19254228 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
19254190 TTACTACTAA
19254200 TATG TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG TATG T
19254229 TTTTTTTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:19255427 original size:13 final size:13
Alignment explanation
Indices: 19255409--19255433 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19255399 ATAAAAGTGA
19255409 AAAAAATAAAAAT
1 AAAAAATAAAAAT
19255422 AAAAAATAAAAA
1 AAAAAATAAAAA
19255434 GTCTTTAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:19262571 original size:19 final size:20
Alignment explanation
Indices: 19262498--19262581 Score: 68
Period size: 19 Copynumber: 4.3 Consensus size: 20
19262488 TTTTACTTAT
* *
19262498 TTATTTCATTCTTATTAGTA
1 TTATTTCATTATTATTATTA
*
19262518 TTATTTC-TTATTATTCTTA
1 TTATTTCATTATTATTATTA
19262537 TTTATTT-ATTTATTATT-TTA
1 -TTATTTCA-TTATTATTATTA
* * *
19262557 CTATTTCATTCTTATTGTT-
1 TTATTTCATTATTATTATTA
19262576 TTATTT
1 TTATTT
19262582 TGTTTTAGTG
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
19 26 0.49
20 19 0.36
21 8 0.15
ACGTcount: A:0.21, C:0.08, G:0.02, T:0.68
Consensus pattern (20 bp):
TTATTTCATTATTATTATTA
Found at i:19262572 original size:40 final size:40
Alignment explanation
Indices: 19262493--19262572 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
19262483 TCCATTTTTA
* *
19262493 CTTATTTATTTCATTCTTATTAGTATTATTTCTTATTATT
1 CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
* *
19262533 CTTATTTATTT-ATTTATTATT-TTACTATTTCATTCTTATT
1 CTTATTTATTTCA-TTATTATTAGTACTATTTC-TTATTATT
19262573 GTTTTATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
39 9 0.26
40 25 0.74
ACGTcount: A:0.23, C:0.10, G:0.01, T:0.66
Consensus pattern (40 bp):
CTTATTTATTTCATTATTATTAGTACTATTTCTTATTATT
Found at i:19274747 original size:41 final size:40
Alignment explanation
Indices: 19274620--19274764 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
19274610 CTCGCACAAG
* * ** * * *
19274620 GCCTTCGGGTCTTAACCCAAATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
19274660 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
19274700 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
19274741 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
19274765 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 57 0.63
41 27 0.30
42 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:19275995 original size:38 final size:38
Alignment explanation
Indices: 19275953--19276028 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
19275943 CAAGAACTCC
19275953 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
19275991 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
19276029 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:19294699 original size:40 final size:40
Alignment explanation
Indices: 19294644--19294861 Score: 318
Period size: 40 Copynumber: 5.5 Consensus size: 40
19294634 CGGATGATAA
*
19294644 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATA-T
*
19294684 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
19294724 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGACTATAT
* * *
19294764 CCGGGCTAGGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
*
19294804 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT-AGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGA-CTATAT
*
19294844 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
19294862 TACTTGGTTT
Statistics
Matches: 164, Mismatches: 10, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
39 17 0.10
40 145 0.88
41 2 0.01
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTATAT
Found at i:19294777 original size:80 final size:80
Alignment explanation
Indices: 19294640--19294861 Score: 351
Period size: 80 Copynumber: 2.8 Consensus size: 80
19294630 TATCCGGATG
*
19294640 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTG-CTATA-TCCGGGCTAAGTCCCGAAGG
19294703 CATTTGTGCGAGTTACT
64 CATTTGTGCGAGTTACT
* *
19294720 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAGGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
19294785 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
19294800 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATATCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGG
19294862 TACTTGGTTT
Statistics
Matches: 132, Mismatches: 8, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
79 14 0.11
80 115 0.87
81 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:19299263 original size:30 final size:30
Alignment explanation
Indices: 19299229--19299290 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
19299219 ATCATTAACT
*
19299229 TAAACTTTGGAAAAATTATAATTTTTCCCC
1 TAAACTTTGGAAAAATTATAATTTTGCCCC
* * * *
19299259 TAAACTTTTGCATATTTATAATTTTGCCCC
1 TAAACTTTGGAAAAATTATAATTTTGCCCC
19299289 TA
1 TA
19299291 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.06, T:0.44
Consensus pattern (30 bp):
TAAACTTTGGAAAAATTATAATTTTGCCCC
Found at i:19304948 original size:48 final size:47
Alignment explanation
Indices: 19304788--19304956 Score: 162
Period size: 48 Copynumber: 3.6 Consensus size: 47
19304778 TGATATGTGT
* * * * *
19304788 GCTAGTGCAAGACATGTATGGGACATGCATCAGCCACAGC-AT-GAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTC-GCGATATAAA
* * * * * * *
19304834 GCTAGTGTAAGACACGTCCGGGACATACATCGGCCTTGAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATA-TAAA
*
19304882 GCCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATATA-AA
* *
19304930 GCTAGTGTAAGACCTGTCTTGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
19304957 GTGGCAGCTT
Statistics
Matches: 96, Mismatches: 23, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
45 1 0.01
46 31 0.32
47 1 0.01
48 63 0.66
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATATAAA
Found at i:19316077 original size:17 final size:19
Alignment explanation
Indices: 19316035--19316078 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
19316025 ATGAAATTTT
*
19316035 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
19316054 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
19316072 AA-TATTA
1 AATTATTA
19316079 CTGTATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:19324388 original size:49 final size:49
Alignment explanation
Indices: 19324316--19324437 Score: 183
Period size: 49 Copynumber: 2.5 Consensus size: 49
19324306 GGATGTTAAA
*
19324316 GTAAGACCTGTCTGGGACATGGCATCGAAAC-CGATAGATGAGAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATC-AAACTCGATAGATGAAAGCCAGT
* * *
19324365 GTAAGACCTGTCTGGGACATGGCATCAACCTCGCTATATGAAAGCCAGT
1 GTAAGACCTGTCTGGGACATGGCATCAAACTCGATAGATGAAAGCCAGT
19324414 GTAAGACCATGTCTGGGACATGGC
1 GTAAGACC-TGTCTGGGACATGGC
19324438 GTCGGCATCT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
48 3 0.04
49 49 0.73
50 15 0.22
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (49 bp):
GTAAGACCTGTCTGGGACATGGCATCAAACTCGATAGATGAAAGCCAGT
Found at i:19327388 original size:7 final size:7
Alignment explanation
Indices: 19327371--19327406 Score: 63
Period size: 7 Copynumber: 5.0 Consensus size: 7
19327361 ATGCAAAATA
19327371 AAAGAAAG
1 AAAG-AAG
19327379 AAAGAAG
1 AAAGAAG
19327386 AAAGAAG
1 AAAGAAG
19327393 AAAGAAG
1 AAAGAAG
19327400 AAAGAAG
1 AAAGAAG
19327407 GAAGGAAGCA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 24 0.86
8 4 0.14
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (7 bp):
AAAGAAG
Found at i:19329913 original size:30 final size:30
Alignment explanation
Indices: 19329879--19329936 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
19329869 CTTTAACTAT
19329879 AACTTTGGCAAAATTACAATTTTTCCCCTA
1 AACTTTGGCAAAATTACAATTTTTCCCCTA
* * *
19329909 AACTTTTGCAAATTTACACTTTTTCCCC
1 AACTTTGGCAAAATTACAATTTTTCCCC
19329937 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTGGCAAAATTACAATTTTTCCCCTA
Found at i:19338964 original size:42 final size:42
Alignment explanation
Indices: 19338852--19338971 Score: 152
Period size: 43 Copynumber: 2.8 Consensus size: 42
19338842 TACCGTACCA
* * * *
19338852 ATGCCATATCCCAGATATAGTCTTACATGTAATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
* *
19338894 ATGCCAATAGCCCAGCTATGGTCTTACACG-AAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TCTCATATCG
*
19338937 ATGCCATATCCTAGATATGGTCTTACACGTAATCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAATCT
19338972 TGGTAACCGT
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
42 31 0.47
43 35 0.53
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATCTCATATCG
Found at i:19363041 original size:12 final size:12
Alignment explanation
Indices: 19363024--19363057 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
19363014 CAACCCACCC
19363024 ATATTAATTTTT
1 ATATTAATTTTT
*
19363036 ATATTATTTTTT
1 ATATTAATTTTT
19363048 ATA-TAATTTT
1 ATATTAATTTT
19363058 AAAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:19363100 original size:17 final size:18
Alignment explanation
Indices: 19363059--19363098 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
19363049 TATAATTTTA
*
19363059 AAAAATATATAAACTATC
1 AAAAATATAAAAACTATC
19363077 AAAAATACTAAAAAC-ATC
1 AAAAATA-TAAAAACTATC
19363095 AAAA
1 AAAA
19363099 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATATAAAAACTATC
Found at i:19363665 original size:26 final size:26
Alignment explanation
Indices: 19363614--19363665 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
19363604 AATGGTAATT
* *
19363614 AAATGTTAAATTTATATGCTGTTATG
1 AAATGTTAAATTTATATGATGCTATG
*
19363640 AAATGTTAGAATTTGTAT-ATGCTATG
1 AAATGTTA-AATTTATATGATGCTATG
19363666 GCCGAACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.35, C:0.04, G:0.17, T:0.44
Consensus pattern (26 bp):
AAATGTTAAATTTATATGATGCTATG
Found at i:19365596 original size:46 final size:46
Alignment explanation
Indices: 19365546--19365718 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
19365536 TGGTTGAGCA
19365546 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
19365592 TCCGAACTCGTTGAGTTGAGCCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
19365637 CATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
19365685 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
19365719 GGGGCAGTTA
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 5 0.05
46 57 0.55
47 27 0.26
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:19365702 original size:93 final size:93
Alignment explanation
Indices: 19365543--19365713 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
19365533 GGATGGTTGA
*
19365543 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
19365608 TGAGCCCGAGTTCGTGAAATGTAACTAG
66 TGAGCCCGAGTTCGTGAAATGTAACTAG
* *
19365636 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTTACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
*
19365700 TTGAGTCCGAGTTC
65 TTGAGCCCGAGTTC
19365714 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGCCCGAGTTCGTGAAATGTAACTAG
Found at i:19368703 original size:15 final size:15
Alignment explanation
Indices: 19368680--19368735 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
19368670 GTATCTTGGG
19368680 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
19368695 TTCCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
19368710 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
19368725 TTTCTTTATTC
1 TTTCTTTATTC
19368736 GATTTGCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.12, C:0.18, G:0.11, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:19371186 original size:46 final size:46
Alignment explanation
Indices: 19371136--19371308 Score: 215
Period size: 46 Copynumber: 3.7 Consensus size: 46
19371126 TGGTTGAGCA
*
19371136 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * * * *
19371182 TCCGAACTCGTTGAATTGAGTCCGAGTTC-GTGAAATGTAT-CTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACG
19371229 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* *
19371275 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
19371309 GGGGCGGTTA
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
45 1 0.01
46 68 0.65
47 35 0.33
48 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:19371294 original size:93 final size:93
Alignment explanation
Indices: 19371133--19371303 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
19371123 GGATGGTTGA
* *
19371133 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAAT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAAT
19371198 TGAGTCCGAGTTCGTGAAATGTATCTAG
66 TGAGTCCGAGTTCGTGAAATGTATCTAG
* *
19371226 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAAT
19371291 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
19371304 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAAT
TGAGTCCGAGTTCGTGAAATGTATCTAG
Done.