Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 68 of 259
Found at i:21938373 original size:52 final size:52
Alignment explanation
Indices: 21938291--21938414 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
21938281 GAGGAAGTGC
* *
21938291 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTG
21938343 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTG
21938395 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
21938415 ATTAAAGAGG
Statistics
Matches: 70, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
51 10 0.14
52 60 0.86
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:21938624 original size:42 final size:42
Alignment explanation
Indices: 21938559--21938650 Score: 123
Period size: 42 Copynumber: 2.2 Consensus size: 42
21938549 TAGTCTCCCC
* ** *
21938559 AAATAGGCTTGCATACATTCATTGGTATT-TCATGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTAT-AGGTGATATTG
*
21938601 AAATGGGCTTGCATACATCCATTGACATTATAGGTGATATTG
1 AAATAGGCTTGCATACATCCATTGACATTATAGGTGATATTG
21938643 AAATAGGC
1 AAATAGGC
21938651 CTAAGGGCCA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 42 0.98
43 1 0.02
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.35
Consensus pattern (42 bp):
AAATAGGCTTGCATACATCCATTGACATTATAGGTGATATTG
Found at i:21938751 original size:31 final size:31
Alignment explanation
Indices: 21938674--21938752 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
21938664 CGTTTACAGT
* *
21938674 AAAGGCTTCGGCCCAATGATTTGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
21938705 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
21938736 AAAGACTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
21938753 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:21940773 original size:43 final size:43
Alignment explanation
Indices: 21940690--21940857 Score: 135
Period size: 43 Copynumber: 3.9 Consensus size: 43
21940680 GTACAATGTC
**
21940690 ATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCA
1 ATATCCCAGATATGGTCTTACATGAAATCACATATCGATGCCA
* * *
21940733 CTATCCCAGATAGGGTCTTACATGAAATCGA-TTAAT-GATGCCA
1 ATATCCCAGATATGGTCTTACATGAAATC-ACAT-ATCGATGCCA
* * * * * * *
21940776 ATGTCCCAGACATGGTCTTACACGTATTCTCAATAT-AATGCCA
1 ATATCCCAGATATGGTCTTACATGAAATCAC-ATATCGATGCCA
* * * * *
21940819 ATTTCCCAGACATGGTCTTACAAGTAATCACATCTCGAT
1 ATATCCCAGATATGGTCTTACATGAAATCACATATCGAT
21940858 AACCTAATGT
Statistics
Matches: 99, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 3 0.03
43 92 0.93
44 4 0.04
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (43 bp):
ATATCCCAGATATGGTCTTACATGAAATCACATATCGATGCCA
Found at i:21946072 original size:57 final size:57
Alignment explanation
Indices: 21946011--21946128 Score: 159
Period size: 57 Copynumber: 2.1 Consensus size: 57
21946001 TGTCCAAATG
*
21946011 GACAGCTTGAAAAACGTTAATTTGGACAACATTT-TGACTC-AATTAAACATCAATATA
1 GACAGCTTGAAAAACCTTAATTTGGACAAC-TTTATGA-TCGAATTAAACATCAATATA
* * * *
21946068 GACAGCTTGAATAACCTTATTTTGGACAGCTTTATGATCGAATTTAACATCAATATA
1 GACAGCTTGAAAAACCTTAATTTGGACAACTTTATGATCGAATTAAACATCAATATA
21946125 GACA
1 GACA
21946129 AATCAAGTTT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
56 5 0.09
57 49 0.91
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (57 bp):
GACAGCTTGAAAAACCTTAATTTGGACAACTTTATGATCGAATTAAACATCAATATA
Found at i:21954802 original size:13 final size:13
Alignment explanation
Indices: 21954784--21954808 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21954774 AATCACAAAT
21954784 AAATACACATATC
1 AAATACACATATC
21954797 AAATACACATAT
1 AAATACACATAT
21954809 TTTTTTTTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.20, G:0.00, T:0.24
Consensus pattern (13 bp):
AAATACACATATC
Found at i:21956142 original size:14 final size:14
Alignment explanation
Indices: 21956123--21956166 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
21956113 CACAACTTAT
21956123 ATTATATACATATA
1 ATTATATACATATA
* *
21956137 ATTATATACATTTT
1 ATTATATACATATA
21956151 ATTATTATAACATATA
1 ATTA-TAT-ACATATA
21956167 TATATTGTAC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 16 0.67
15 3 0.12
16 5 0.21
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (14 bp):
ATTATATACATATA
Found at i:21958884 original size:43 final size:42
Alignment explanation
Indices: 21958836--21958954 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 42
21958826 CGAGATGTAT
21958836 TTACGTGTAAGACCATGTCTGGGACATTGACAT-TGTAT-TGAGA
1 TTACGTGTAAGACCATGTCTGGGACATTGACATAT-TATAT--GA
* * *
21958879 TTACGTGTAAGACCATGTCTAGGACAGTGGCATCATTATATGA
1 TTACGTGTAAGACCATGTCTGGGACATTGACAT-ATTATATGA
* * *
21958922 TTTCATGTAAGACCATCTCTGGGACATTGACAT
1 TTACGTGTAAGACCATGTCTGGGACATTGACAT
21958955 CGATAAGTGA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
43 59 0.92
44 3 0.05
45 2 0.03
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATTGACATATTATATGA
Found at i:21961929 original size:55 final size:54
Alignment explanation
Indices: 21961773--21961969 Score: 175
Period size: 55 Copynumber: 3.6 Consensus size: 54
21961763 TTTCCTTTTT
* * * * *
21961773 AAACTTACCATTGCCATGTCTTGACATGGTCTTACGTG-GTATCCTTGCCTTATGA
1 AAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAG-ATCATTGCCTTAT-A
* * * * *
21961828 ACAC--ACCATTCCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATA
1 AAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCATTGCCTTATA
* ** * * * ** *
21961880 GTAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCATTGCCTTGTA
1 -AAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCATTGCCTTATA
21961935 AAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
1 AAACTTACCAATGCCATGCCTTGGCATGGTCTTAC
21961970 CTGGTATCCT
Statistics
Matches: 112, Mismatches: 26, Indels: 9
0.76 0.18 0.06
Matches are distributed among these distances:
52 1 0.01
53 40 0.36
54 30 0.27
55 41 0.37
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.36
Consensus pattern (54 bp):
AAACTTACCAATGCCATGCCTTGGCATGGTCTTACATGAGATCATTGCCTTATA
Found at i:21968605 original size:37 final size:37
Alignment explanation
Indices: 21968544--21968622 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
21968534 TTATTACGAA
* * *
21968544 GTCTTACCCGAACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
* *
21968581 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
21968618 GTCTT
1 GTCTT
21968623 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCCCCACACGAAGTCATCGG
Found at i:21968910 original size:47 final size:48
Alignment explanation
Indices: 21968740--21968959 Score: 374
Period size: 47 Copynumber: 4.6 Consensus size: 48
21968730 GCCCTTCGGG
21968740 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
21968790 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
*
21968839 AC-TTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
*
21968885 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
21968932 ACTTTCACATTCATCACATCGGCCATTA
1 ACTTTCACATTCATCACATCGGCCATTA
21968960 AGCCATACTA
Statistics
Matches: 168, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
46 10 0.06
47 72 0.43
48 35 0.21
49 47 0.28
50 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
Found at i:21968922 original size:95 final size:95
Alignment explanation
Indices: 21968740--21968959 Score: 372
Period size: 95 Copynumber: 2.3 Consensus size: 95
21968730 GCCCTTCGGG
21968740 ACTTATCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATC
21968805 ACATCGGCCATTAGGCCCTATCACATATATATAC
64 ACATCGGCCATTAGGCCCTATCAC--ATATATAC
*
21968839 AC-TTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
*
21968902 ATCGGCCATTAGGCCTTATCACATATATAC
66 ATCGGCCATTAGGCCCTATCACATATATAC
21968932 ACTTTCACATTCATCACATCGGCCATTA
1 ACTTTCACATTCATCACATCGGCCATTA
21968960 AGCCATACTA
Statistics
Matches: 118, Mismatches: 2, Indels: 7
0.93 0.02 0.06
Matches are distributed among these distances:
93 10 0.08
94 25 0.21
95 46 0.39
97 34 0.29
98 1 0.01
99 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (95 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCCTATCACATATATAC
Found at i:21972435 original size:53 final size:54
Alignment explanation
Indices: 21972350--21972553 Score: 214
Period size: 53 Copynumber: 3.8 Consensus size: 54
21972340 TTCCTTTTTA
** *
21972350 AACTTACCATTGCCATGTTTTGACATGGTCTTACGTGGTATCTTTGCCTTAT-G
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * *
21972403 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
** * * * * * * *
21972457 TAGTTTATCAATT-CCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTA-CCATTGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
* * *
21972512 AACTTACCAATGCCATGCCTTGGCATGGTCTTACCTGGTATC
1 AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATC
21972554 CTTAAACCCT
Statistics
Matches: 120, Mismatches: 27, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
53 49 0.41
54 30 0.25
55 37 0.31
56 4 0.03
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.38
Consensus pattern (54 bp):
AACTTACCATTGCCATGCCTTGACATGGTCTTACATGGTATCTTTGCCTTATAG
Found at i:21976418 original size:13 final size:13
Alignment explanation
Indices: 21976400--21976426 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21976390 CACAAATGAT
21976400 AAAATTTTCACAC
1 AAAATTTTCACAC
21976413 AAAATTTTCACAC
1 AAAATTTTCACAC
21976426 A
1 A
21976427 TGTCAATTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:21979212 original size:21 final size:21
Alignment explanation
Indices: 21979174--21979214 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21979164 AAATTTAACA
*
21979174 TCAATTTAATCTATTTCATAC
1 TCAATTTAATCTAATTCATAC
21979195 TCAATTTAAT-TCAATTCATA
1 TCAATTTAATCT-AATTCATA
21979215 TATTAGGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.46
Consensus pattern (21 bp):
TCAATTTAATCTAATTCATAC
Found at i:21984817 original size:44 final size:44
Alignment explanation
Indices: 21984763--21984849 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
21984753 AAAATACATT
* * * *
21984763 CTCTTTTTAAGAATGTAACGT-GTCTTATCGTTACATCTAAAATC
1 CTCTTCTTAAGAATGTAAC-TAGTATTATCGTTAAACCTAAAATC
*
21984807 CTCTTCTTAAGAATTTAACTAGTATTATCGTTAAACCTAAAAT
1 CTCTTCTTAAGAATGTAACTAGTATTATCGTTAAACCTAAAAT
21984850 TTTAAAAGGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 1 0.03
44 36 0.97
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.40
Consensus pattern (44 bp):
CTCTTCTTAAGAATGTAACTAGTATTATCGTTAAACCTAAAATC
Found at i:21985784 original size:11 final size:11
Alignment explanation
Indices: 21985768--21985794 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
21985758 TCAAAAAACG
21985768 ATAAAATAGAT
1 ATAAAATAGAT
21985779 ATAAAATAGAT
1 ATAAAATAGAT
21985790 ATAAA
1 ATAAA
21985795 TTACCAAGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (11 bp):
ATAAAATAGAT
Found at i:21988600 original size:18 final size:19
Alignment explanation
Indices: 21988577--21988616 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
21988567 TTTTAATGAG
*
21988577 TAAATTTAACT-AAAAATA
1 TAAATTAAACTAAAAAATA
*
21988595 TAAATTAAATTAAAAAATA
1 TAAATTAAACTAAAAAATA
21988614 TAA
1 TAA
21988617 GTATTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAATTAAACTAAAAAATA
Found at i:21991564 original size:45 final size:45
Alignment explanation
Indices: 21991492--21991615 Score: 149
Period size: 45 Copynumber: 2.8 Consensus size: 45
21991482 TGCTTTCACC
* * * * *
21991492 TAATGCCATAGCTTCTTTCAGCAATGGTCTTACTCATTTTTATCA
1 TAATGCCATAACATCTTTCAACTATGGTCTTACTCATCTTTATCA
* *
21991537 TGATGCCATAACATCTTTCAACTATGGTTTTACTCATCTTTATCA
1 TAATGCCATAACATCTTTCAACTATGGTCTTACTCATCTTTATCA
** **
21991582 TAATGTAATATTATCTTTCAACTATGGTCTTACT
1 TAATGCCATAACATCTTTCAACTATGGTCTTACT
21991616 TATGTTAGGC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 66 1.00
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44
Consensus pattern (45 bp):
TAATGCCATAACATCTTTCAACTATGGTCTTACTCATCTTTATCA
Found at i:21993776 original size:108 final size:108
Alignment explanation
Indices: 21993585--21993800 Score: 414
Period size: 108 Copynumber: 2.0 Consensus size: 108
21993575 TTTACCAACA
21993585 AATATATACACTTTGACATACCAAAACCTATTTACATGCCACATAACCAAGACAAGAATGATTGG
1 AATATATACACTTTGACATACCAAAACCTATTTACATGCCACATAACCAAGACAAGAATGATTGG
*
21993650 AAGTCTACTAAGATAGAAGCTGAATAGTGTAAGATCAGGGGAT
66 AAGTCTACTAAGACAGAAGCTGAATAGTGTAAGATCAGGGGAT
21993693 AATATATACACTTTGACATACCAAAACCTATTTACATGCCACATAACCAAGACAAGAATGATTGG
1 AATATATACACTTTGACATACCAAAACCTATTTACATGCCACATAACCAAGACAAGAATGATTGG
*
21993758 AAGTCTACTAAGACAGAAGCTGAATATTGTAAGATCAGGGGAT
66 AAGTCTACTAAGACAGAAGCTGAATAGTGTAAGATCAGGGGAT
21993801 GATCCAATAG
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 106 1.00
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.24
Consensus pattern (108 bp):
AATATATACACTTTGACATACCAAAACCTATTTACATGCCACATAACCAAGACAAGAATGATTGG
AAGTCTACTAAGACAGAAGCTGAATAGTGTAAGATCAGGGGAT
Found at i:21995686 original size:8 final size:8
Alignment explanation
Indices: 21995675--21995701 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
21995665 TGTGTCCCAT
21995675 TTCTCTAG
1 TTCTCTAG
21995683 TTCTCTAG
1 TTCTCTAG
21995691 TTCTCTAG
1 TTCTCTAG
21995699 TTC
1 TTC
21995702 CCAATTTCGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.11, C:0.26, G:0.11, T:0.52
Consensus pattern (8 bp):
TTCTCTAG
Found at i:21995769 original size:31 final size:31
Alignment explanation
Indices: 21995731--21995794 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
21995721 AAATTGGTTT
*
21995731 AGGATTTTGGCTTCTATGCATTTAAAGACTA
1 AGGATTTTGGCTTCTATGCATTTAAAGAATA
*
21995762 AGGATTTTGGCTTCTATGCATTTAGAGAATA
1 AGGATTTTGGCTTCTATGCATTTAAAGAATA
21995793 AG
1 AG
21995795 AATACCTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.38
Consensus pattern (31 bp):
AGGATTTTGGCTTCTATGCATTTAAAGAATA
Found at i:22001901 original size:39 final size:39
Alignment explanation
Indices: 22001849--22002228 Score: 472
Period size: 39 Copynumber: 9.7 Consensus size: 39
22001839 ATTTGATGTA
*
22001849 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
*
22001888 TATCCGGACTTAAGGTCTGCAGGCTTCGTACTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
* *
22001927 TATCCGGACTTAAGGTCCCCAGGCTTCATACTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
* ** *
22001966 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTACTGGAATTG
* * * *
22002006 TATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
*
22002045 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
* ** *
22002084 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTACTGGAATTG
* * * * *
22002124 TATCCGGACTTAAGATCCGCAGGCTTTGTACTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
* * * *
22002163 TATCCGGACTTAAGGTCCGCAGGCTTCGTATTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
* * *
22002202 TATCCGGGCTTAAAGTACCGTAGGCTT
1 TATCCGGACTTAAGGT-CCGCAGGCTT
22002229 TGTGTTGGTG
Statistics
Matches: 300, Mismatches: 38, Indels: 5
0.87 0.11 0.01
Matches are distributed among these distances:
39 222 0.74
40 78 0.26
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTG
Found at i:22002079 original size:118 final size:118
Alignment explanation
Indices: 22001865--22002216 Score: 587
Period size: 118 Copynumber: 3.0 Consensus size: 118
22001855 GACTTAAGGT
* * * * *
22001865 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAGGCTTCGTACTGGAATTGTAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
* *
22001930 CCGGACTTAAGGTCCCCAGGCTTCATACTGGAATTGTATCCGGGCTTAAAGAC
66 CCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTGTATCCGGGCTTAAAGAC
22001983 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
*
22002048 CCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
66 CCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTGTATCCGGGCTTAAAGAC
*
22002101 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTTGTACTGGTACTATAT
1 CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
* * * *
22002166 CCGGACTTAAGGTCCGCAGGCTTCGTATTGGTACTATATCCGGGCTTAAAG
66 CCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTGTATCCGGGCTTAAAG
22002217 TACCGTAGGC
Statistics
Matches: 220, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
118 220 1.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (118 bp):
CCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATAT
CCGGACTTAAGGTCCGCAGGCTTCGTACTGGAATTGTATCCGGGCTTAAAGAC
Found at i:22002144 original size:157 final size:157
Alignment explanation
Indices: 22001847--22002228 Score: 532
Period size: 157 Copynumber: 2.4 Consensus size: 157
22001837 ATATTTGATG
* * * * *
22001847 TATATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGACTTAAGGTCTGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGC
* * *
22001912 TTCGTACTGGAATTGTATCCGGACTTAAGGTCCCCAGGCTTCATACTGGAATTGTATCCGGGCTT
66 TTCGTACTGGAATTGTATCCGGACTTAAAGACCCCAGGCTTCATACTGGAATTGTATCCGGACTT
* *
22001977 AAAGACCCGCAGGCTTCGTGCTGGAAT
131 AAAGACCCGCAGGCTTCGTACTGGAAC
* *
22002004 TGTATCCGGACTTAAGATCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGC
* * * *
22002069 TTCGTGCTGGAATTGTATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTATCCGGACT
66 TTCGTACTGGAATTGTATCCGGACTTAAAGACCC-CAGGCTTCATACTGGAATTGTATCCGGACT
* * *
22002134 T-AAGATCCGCAGGCTTTGTACTGGTAC
130 TAAAGACCCGCAGGCTTCGTACTGGAAC
* * * *
22002161 TATATCCGGACTTAAGGTCCGCAGGCTTCGTATTGGTACTATATCCGGGCTTAAAGTACCGTAGG
1 TATATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGT-CCGCAGG
22002226 CTT
65 CTT
22002229 TGTGTTGGTG
Statistics
Matches: 198, Mismatches: 25, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
157 161 0.81
158 37 0.19
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.29
Consensus pattern (157 bp):
TATATCCGGACTTAAGGTCCGCAGGCTTCGTACTGGTACTATATCCGGACTTAAGGTCCGCAGGC
TTCGTACTGGAATTGTATCCGGACTTAAAGACCCCAGGCTTCATACTGGAATTGTATCCGGACTT
AAAGACCCGCAGGCTTCGTACTGGAAC
Found at i:22004479 original size:48 final size:48
Alignment explanation
Indices: 22004403--22004681 Score: 353
Period size: 48 Copynumber: 5.8 Consensus size: 48
22004393 ATCGTGCTAA
22004403 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
* * *
22004451 ATGTTCCTGTGTAAGACCATGCCTGGGACATGGCATCGGCGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
* * * *
22004499 ATGTGCCTGTGTAAGACCATGTTTGGGACATGGCATCGGTGTTGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
* * * *
22004547 ATGTGCCTGTGTAAGACCATGTTTGAGACATGGCATAGGCAATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
* * * * *
22004595 GTGTGCCAGTGTAAGACCATGTCTGGGACACGGTATTGACGATGATAT
1 ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
* ** * *
22004643 GTG-GATTCATGTAAGACCATGTCGGGGACATGGCATTGG
1 ATGTGCCT-GTGTAAGACCATGTCTGGGACATGGCATTGG
22004682 TACTTTATTT
Statistics
Matches: 200, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
47 1 0.00
48 199 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (48 bp):
ATGTGCCTGTGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
Found at i:22007106 original size:46 final size:46
Alignment explanation
Indices: 22007051--22007217 Score: 155
Period size: 46 Copynumber: 3.6 Consensus size: 46
22007041 CTCGTAGCCA
* * *
22007051 ATGCATGTCCTAGACACGTCTTACACTGGCTTACTTCT-AGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGC-TACTTCTAAGAGGCTG
* * * *
22007097 ATGCATGTCCCAGACATGTCGTACACTAGC-ACTCGTCTCA-ATGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTACT--TCTAAGAGGCTG
* *
22007143 ATGCCATGTCCTAGACATGGTCTTACACTGGCT-C-TCATAATGTGGCTG
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTACTTC-TAA-GAGGCTG
22007191 ATGCATGTCCCAGACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
22007218 AGCTCACAAT
Statistics
Matches: 99, Mismatches: 13, Indels: 18
0.76 0.10 0.14
Matches are distributed among these distances:
44 3 0.03
45 2 0.02
46 48 0.48
47 27 0.27
48 19 0.19
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTACTTCTAAGAGGCTG
Found at i:22010010 original size:79 final size:81
Alignment explanation
Indices: 22009877--22010058 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 81
22009867 AATGATGTCT
*
22009877 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
*
22009941 GCGAGATACTA-ATTCC
66 GCGAGATACTATA-ACC
* * * **
22009957 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
*
22010019 TGCGAGTTACTATAACC
65 TGCGAGATACTATAACC
*
22010036 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
22010059 AACGAGGAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
GCGAGATACTATAACC
Found at i:22010072 original size:40 final size:40
Alignment explanation
Indices: 22009877--22010058 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 40
22009867 AATGATGTCT
* * * *
22009877 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACC
* * *
22009917 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-ACC
22009957 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
*
22009996 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
*
22010036 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
22010059 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACC
Found at i:22010080 original size:79 final size:79
Alignment explanation
Indices: 22009927--22010081 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
22009917 GGACTAAGAT
* ** *
22009927 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
22009992 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
22010006 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-C
*
22010069 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
22010082 ATTTCGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.59
80 25 0.38
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:22017450 original size:30 final size:30
Alignment explanation
Indices: 22017414--22017473 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
22017404 TTCCCGAGCC
22017414 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGCAAAATG-GTAATTATGCAAAAGTT
* *
22017444 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGCAAAATGGTAATTATGCAAAAGTT
22017474 CATATTAAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTAATTATGCAAAAGTT
Found at i:22018199 original size:49 final size:50
Alignment explanation
Indices: 22018121--22018366 Score: 307
Period size: 49 Copynumber: 4.9 Consensus size: 50
22018111 AGCTATTGTG
22018121 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * ** *
22018171 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * * **
22018221 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
22018271 AGGTCACGTTTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
22018321 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
22018367 GCTTCGGCTA
Statistics
Matches: 164, Mismatches: 30, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
49 81 0.49
50 46 0.28
51 37 0.23
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:22018625 original size:16 final size:17
Alignment explanation
Indices: 22018604--22018642 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
22018594 TTAGTAGTAA
22018604 AACAGTGT-TGGACAGC
1 AACAGTGTCTGGACAGC
22018620 AACAGT-TCTGGACAGC
1 AACAGTGTCTGGACAGC
22018636 AACAGTG
1 AACAGTG
22018643 CATGAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 1 0.05
16 20 0.95
ACGTcount: A:0.33, C:0.21, G:0.28, T:0.18
Consensus pattern (17 bp):
AACAGTGTCTGGACAGC
Found at i:22021160 original size:16 final size:15
Alignment explanation
Indices: 22021122--22021160 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
22021112 TGGATTCTCG
*
22021122 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
22021137 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
22021152 TATTCTTGG
1 TA-TCTTGG
22021161 CTTCTCTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.15, C:0.13, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:22023239 original size:30 final size:30
Alignment explanation
Indices: 22023205--22023265 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
22023195 TTCCCGAGCC
22023205 TAGGGGAAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGGAAAAATG-GTAATTATGCAAAAGTT
* * *
22023235 TAGGGGCAAAATGGTAATTTTGCCAAAGTT
1 TAGGGGAAAAATGGTAATTATGCAAAAGTT
22023265 T
1 T
22023266 GTATTAAAGG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.38, C:0.07, G:0.26, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAATGGTAATTATGCAAAAGTT
Found at i:22024083 original size:50 final size:49
Alignment explanation
Indices: 22023913--22024156 Score: 310
Period size: 49 Copynumber: 4.9 Consensus size: 49
22023903 GCTATTGTGA
22023913 GGTCACG-GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * *
22023961 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTAGCTGATAACTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT
* * * **
22024011 CGATCACGTGTGTAGTAATAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
*
22024061 AGGTCACGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
22024111 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
22024157 GCTTCAGCTA
Statistics
Matches: 165, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
48 5 0.03
49 76 0.46
50 47 0.28
51 37 0.22
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:22033104 original size:42 final size:42
Alignment explanation
Indices: 22033050--22033178 Score: 156
Period size: 42 Copynumber: 3.0 Consensus size: 42
22033040 CTCATAGCAC
* * *
22033050 CATACCAATGCCATATCCCAGATATGGCCTTACAT-AGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATGAAG-TCT
* *
22033092 CATATCGATGCCAATAGCCCA-ACTATGGTCTTACATGAAGTCT
1 CATATCAATGCC-ATATCCCAGA-TATGGTCTTACATGAAGTCT
22033135 CATATCAATGCCATATCCCAGATATGGTCTTACATGTAA-TCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACATG-AAGTCT
22033177 CA
1 CA
22033179 AATACCCCTA
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
42 37 0.49
43 36 0.48
44 2 0.03
ACGTcount: A:0.31, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACATGAAGTCT
Found at i:22052593 original size:46 final size:46
Alignment explanation
Indices: 22052526--22052697 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
22052516 AACCCGCCCC
22052526 TAAGTGAACTCGGACTCAACTCAATGA-TCTCGGGCATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAATGAGT-TCGGGCATTCGCATCCA
* *
22052572 TAAGTGAACTCGGACTCAACTCAATGAGTTTGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGG--G-C-A-TTCGCATCCA
* * * * *
22052620 TCA-CGATCTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCATCCA
*
22052665 TAGGTGAACTCGGACTCAACTCAATGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAATGAGTTCGG
22052698 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 1 0.01
46 56 0.55
47 26 0.25
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAATGAGTTCGGGCATTCGCATCCA
Found at i:22053156 original size:30 final size:30
Alignment explanation
Indices: 22053122--22053183 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
22053112 GCATTTAATA
22053122 TAAACTTTGGAAAAATTACACTTTTGCCCC
1 TAAACTTTGGAAAAATTACACTTTTGCCCC
* * *
22053152 TAAACTTTTGCATAATTACACTTTTGCCCC
1 TAAACTTTGGAAAAATTACACTTTTGCCCC
22053182 TA
1 TA
22053184 GGCTCGAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.37
Consensus pattern (30 bp):
TAAACTTTGGAAAAATTACACTTTTGCCCC
Found at i:22061027 original size:27 final size:27
Alignment explanation
Indices: 22060997--22061173 Score: 113
Period size: 27 Copynumber: 6.5 Consensus size: 27
22060987 ATATTGAGCC
* * * *
22060997 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCCACACAATCAAAT
**
22061024 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
22061051 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACACAAT-CAAAT
* *** *
22061079 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
22061106 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CACAATCAAAT
* * * *
22061133 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
*
22061160 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
22061174 TGTACAATTT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACACAATCAAAT
Found at i:22061089 original size:55 final size:55
Alignment explanation
Indices: 22060997--22061173 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
22060987 ATATTGAGCC
* * * * *
22060997 CGCACACTCAGTGCTATACA-AT-CAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
22061051 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
22061106 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
22061160 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
22061174 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.55
55 43 0.42
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:22061136 original size:82 final size:81
Alignment explanation
Indices: 22061018--22061173 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
22061008 TGCTATACAA
* * * **
22061018 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCA
22061083 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22061100 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
22061164 CCCTTAGTGC
65 CACTTAGTGC
22061174 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22069064 original size:27 final size:27
Alignment explanation
Indices: 22069034--22069210 Score: 113
Period size: 27 Copynumber: 6.5 Consensus size: 27
22069024 ATATTGAGCC
* * * *
22069034 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCCACACAATCAAAT
**
22069061 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
22069088 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACACAAT-CAAAT
* *** *
22069116 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
22069143 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CACAATCAAAT
* * * *
22069170 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
*
22069197 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
22069211 TGTACAATTT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACACAATCAAAT
Found at i:22069126 original size:55 final size:55
Alignment explanation
Indices: 22069034--22069210 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
22069024 ATATTGAGCC
* * * * *
22069034 CGCACACTCAGTGCTATACA-AT-CAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
22069088 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
22069143 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
22069197 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
22069211 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.55
55 43 0.42
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:22069173 original size:82 final size:81
Alignment explanation
Indices: 22069055--22069210 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
22069045 TGCTATACAA
* * * **
22069055 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCA
22069120 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22069137 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
22069201 CCCTTAGTGC
65 CACTTAGTGC
22069211 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22075096 original size:15 final size:14
Alignment explanation
Indices: 22075078--22075125 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
22075068 TTTTGAATGA
22075078 AAATTTTCCGATCTG
1 AAATTTT-CGATCTG
* *
22075093 AAATTTTGGA-ATG
1 AAATTTTCGATCTG
22075106 AAATTTTTCGATCTG
1 AAA-TTTTCGATCTG
22075121 AAATT
1 AAATT
22075126 CAGTCTCCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
13 5 0.19
14 10 0.37
15 12 0.44
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.42
Consensus pattern (14 bp):
AAATTTTCGATCTG
Found at i:22075109 original size:28 final size:29
Alignment explanation
Indices: 22075067--22075125 Score: 93
Period size: 28 Copynumber: 2.1 Consensus size: 29
22075057 CTTTTGCACT
*
22075067 TTTTTGAATGAAAATTTTCCGATCTGAAA
1 TTTTGGAATGAAAATTTTCCGATCTGAAA
*
22075096 TTTTGGAATG-AAATTTTTCGATCTGAAA
1 TTTTGGAATGAAAATTTTCCGATCTGAAA
22075124 TT
1 TT
22075126 CAGTCTCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 19 0.68
29 9 0.32
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.44
Consensus pattern (29 bp):
TTTTGGAATGAAAATTTTCCGATCTGAAA
Found at i:22075113 original size:29 final size:28
Alignment explanation
Indices: 22075067--22075125 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
22075057 CTTTTGCACT
*
22075067 TTTTTGAATGAAAATTTTCCGATCTGAAA
1 TTTTGGAATGAAAATTTT-CGATCTGAAA
*
22075096 TTTTGGAATGAAATTTTTCGATCTGAAA
1 TTTTGGAATGAAAATTTTCGATCTGAAA
22075124 TT
1 TT
22075126 CAGTCTCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
28 12 0.43
29 16 0.57
ACGTcount: A:0.32, C:0.08, G:0.15, T:0.44
Consensus pattern (28 bp):
TTTTGGAATGAAAATTTTCGATCTGAAA
Found at i:22079806 original size:27 final size:26
Alignment explanation
Indices: 22079766--22079871 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 26
22079756 AGGAAGCGTC
*
22079766 CTGGTGGCTATGCCACAATCATCTGAT
1 CTGGTGGCTCTGCCACAAT-ATCTGAT
* *
22079793 CTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTCTGCCACA-ATATCTGAT
* * *
22079820 CTGGTGGCTCTACCACGATTATCTATAT
1 CTGGTGGCTCTGCCAC-AATATCT-GAT
* * *
22079848 CTGGTGACTCTGTCACATTATCTG
1 CTGGTGGCTCTGCCACAATATCTG
22079872 TTCTAGCAGC
Statistics
Matches: 64, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
27 47 0.73
28 17 0.27
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACAATATCTGAT
Found at i:22089443 original size:9 final size:9
Alignment explanation
Indices: 22089424--22089452 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
22089414 CAAAAAGACC
22089424 TCTTC-TTT
1 TCTTCTTTT
22089432 TCTTCTTTT
1 TCTTCTTTT
22089441 TCTTCTTTT
1 TCTTCTTTT
22089450 TCT
1 TCT
22089453 CCTTGCTTAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (9 bp):
TCTTCTTTT
Found at i:22094047 original size:68 final size:63
Alignment explanation
Indices: 22093900--22094047 Score: 174
Period size: 63 Copynumber: 2.3 Consensus size: 63
22093890 ATATAGTTCG
* *
22093900 GCTCTCTTGTACACATGGTGAACACTTAGTACCACCCATGTGACCTAGCCAGTTTATCTCGTA
1 GCTCTCTTGTACACATGGTGAACACATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
* * *
22093963 GCTCTCTTGT-CTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACA-TCATAATGTC
1 GCTCTCTTGTAC-ACATGGTGAACACATAGTACCACCCATGCGACCTAGC--CAGT--T--TATC
22094026 TCGTA
59 TCGTA
22094031 GCTCTCTTGTACACATG
1 GCTCTCTTGTACACATG
22094048 ATGTGCACTC
Statistics
Matches: 72, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
62 1 0.01
63 43 0.60
64 1 0.01
65 2 0.03
66 1 0.01
68 23 0.32
69 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (63 bp):
GCTCTCTTGTACACATGGTGAACACATAGTACCACCCATGCGACCTAGCCAGTTTATCTCGTA
Found at i:22094076 original size:68 final size:68
Alignment explanation
Indices: 22093956--22094084 Score: 163
Period size: 68 Copynumber: 1.9 Consensus size: 68
22093946 AGCCAGTTTA
* * * *
22093956 TCTCGTAGCTCTCTTGTCTACATGGTGTACACATAGTATCACCCATGCGACCTAGCTACATCATA
1 TCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATCATA
22094021 ATG
66 ATG
* * *
22094024 TCTCGTAGCTCTCTTGTAC-ACATGATGTGCAC-TCAGCACCATACATGTGACCTAGCTACAT
1 TCTCGTAGCTCTCTTGT-CTACATGATGTACACAT-AGCACCACACATGCGACCTAGCTACAT
22094085 ACCATCTGTA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
67 1 0.02
68 50 0.96
69 1 0.02
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (68 bp):
TCTCGTAGCTCTCTTGTCTACATGATGTACACATAGCACCACACATGCGACCTAGCTACATCATA
ATG
Found at i:22095949 original size:40 final size:40
Alignment explanation
Indices: 22095777--22095942 Score: 253
Period size: 40 Copynumber: 4.2 Consensus size: 40
22095767 AACCCAAGTA
* * *
22095777 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22095816 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
**
22095856 CCTTCGGGACTTAGCCTAGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
22095896 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
22095936 CCTTCGG
1 CCTTCGG
22095943 ATCTTAGTCC
Statistics
Matches: 115, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 12 0.10
40 103 0.90
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22098063 original size:29 final size:28
Alignment explanation
Indices: 22098027--22098082 Score: 67
Period size: 29 Copynumber: 2.0 Consensus size: 28
22098017 TCATTAACTC
*
22098027 AAACTTTGGAAAATTACAATTTTGCCCT
1 AAACTTTGCAAAATTACAATTTTGCCCT
* * *
22098055 AAACTTTTGCATATTTACACTTTTGCCC
1 AAAC-TTTGCAAAATTACAATTTTGCCC
22098083 CTAGGCTCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 4 0.17
29 19 0.83
ACGTcount: A:0.30, C:0.21, G:0.09, T:0.39
Consensus pattern (28 bp):
AAACTTTGCAAAATTACAATTTTGCCCT
Found at i:22101032 original size:11 final size:11
Alignment explanation
Indices: 22101006--22101038 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22100996 GGGATTGATT
22101006 TGTAAAAA-TA
1 TGTAAAAATTA
22101016 -GTAAAAATTA
1 TGTAAAAATTA
22101026 TGTAAAAATTA
1 TGTAAAAATTA
22101037 TG
1 TG
22101039 AAATAAGGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 7 0.33
10 2 0.10
11 12 0.57
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (11 bp):
TGTAAAAATTA
Found at i:22101561 original size:38 final size:38
Alignment explanation
Indices: 22101491--22101579 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 38
22101481 TTTATGCCGA
* *
22101491 TGTTATTTAGGCTTTGTGCCTAGTAGGATTTGTGCCAC
1 TGTTATTTAGGCTCTGTGCCTAATAGGATTTGTGCCAC
* *
22101529 TGTTATTTAGGCTCTGTGTCTAATA-GACTTTGTGCCAG
1 TGTTATTTAGGCTCTGTGCCTAATAGGA-TTTGTGCCAC
* *
22101567 TATTATGTAGGCT
1 TGTTATTTAGGCT
22101580 TTTTGCTGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
37 2 0.05
38 42 0.95
ACGTcount: A:0.18, C:0.15, G:0.25, T:0.43
Consensus pattern (38 bp):
TGTTATTTAGGCTCTGTGCCTAATAGGATTTGTGCCAC
Found at i:22102035 original size:23 final size:23
Alignment explanation
Indices: 22102009--22102058 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
22101999 GTAAGTAATG
22102009 AGATATAATGCTTGATTTGTGAT
1 AGATATAATGCTTGATTTGTGAT
22102032 AGATATAATGCTTGATTTGTGAT
1 AGATATAATGCTTGATTTGTGAT
22102055 AGAT
1 AGAT
22102059 TTTTGACATG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.32, C:0.04, G:0.22, T:0.42
Consensus pattern (23 bp):
AGATATAATGCTTGATTTGTGAT
Found at i:22102391 original size:12 final size:12
Alignment explanation
Indices: 22102374--22102399 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22102364 GCAGTTACAC
22102374 GGCCTAGCACAT
1 GGCCTAGCACAT
22102386 GGCCTAGCACAT
1 GGCCTAGCACAT
22102398 GG
1 GG
22102400 GCGTGTGAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (12 bp):
GGCCTAGCACAT
Found at i:22117139 original size:37 final size:37
Alignment explanation
Indices: 22117080--22117188 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
22117070 AGCTCAGATG
* *
22117080 AAATCTCCACACGAAGTTATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
*
22117117 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
*
22117154 TAATCTCCACACGTAGTCATCGGGTCTTACCCAGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGA
22117189 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
Found at i:22117459 original size:48 final size:48
Alignment explanation
Indices: 22117334--22117767 Score: 726
Period size: 48 Copynumber: 9.0 Consensus size: 48
22117324 ACACATCGCC
*
22117334 TACATATTTCACAGTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
22117384 TATATATTTCACATT-GACCATTTGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
22117432 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* *
22117482 TATATATTTCACATTAACCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
22117530 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* *
22117578 TACATATTTCACATTAGCCATCCGGCTTTACCACATATACATATCTCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
22117626 TACATATTTCACATTAGCCATCCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
22117674 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
22117722 TACATATTTCACATTAGCCATTCGGCTTTACCACGTATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
22117768 AATGCATCAA
Statistics
Matches: 364, Mismatches: 16, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
48 275 0.76
49 2 0.01
50 87 0.24
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:22120230 original size:29 final size:30
Alignment explanation
Indices: 22120141--22120237 Score: 87
Period size: 28 Copynumber: 3.4 Consensus size: 30
22120131 TCTCATTTCA
* *
22120141 CACACTTAGTGCC-C-ACTGACCGATCTCG
1 CACACATAGTGCCTCAATTGACCGATCTCG
** * *
22120169 CACACATAGTG-CTCGGTTGA-AGAACTCG
1 CACACATAGTGCCTCAATTGACCGATCTCG
* *
22120197 TACACACAGTGCCTCAATT-ACCGATCTCG
1 CACACATAGTGCCTCAATTGACCGATCTCG
22120226 CACACATAGTGC
1 CACACATAGTGC
22120238 TCGGTTAAAG
Statistics
Matches: 52, Mismatches: 13, Indels: 7
0.72 0.18 0.10
Matches are distributed among these distances:
27 1 0.02
28 27 0.52
29 24 0.46
ACGTcount: A:0.27, C:0.33, G:0.19, T:0.22
Consensus pattern (30 bp):
CACACATAGTGCCTCAATTGACCGATCTCG
Found at i:22120459 original size:43 final size:43
Alignment explanation
Indices: 22120398--22120705 Score: 472
Period size: 43 Copynumber: 7.2 Consensus size: 43
22120388 CCTTGCTCGA
* *
22120398 ATCACCGGCACTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
22120441 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
22120484 ATCACCTGCACGAAGCCTGCTAGGCACGAAGGCCTGAATACAT
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* *
22120527 ATCATCGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* ** *
22120570 ATAATTGGCACGAAGCCTGCTAGGCACGAAGGCCCGAGTACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
* * *
22120613 ATCATCAGCACGAAGCCTGCTAGGCACGAAGGCCCGAGTACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
*
22120656 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCCAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
22120699 ATCACCG
1 ATCACCG
22120706 AGTTTCATGC
Statistics
Matches: 244, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 244 1.00
ACGTcount: A:0.31, C:0.33, G:0.24, T:0.12
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCGAATACAC
Found at i:22123604 original size:35 final size:35
Alignment explanation
Indices: 22123556--22123625 Score: 104
Period size: 35 Copynumber: 2.0 Consensus size: 35
22123546 AGAGGCCAAT
22123556 GAAGCCTTCTTCCAAATAATGAAAGAATAGTTTAC
1 GAAGCCTTCTTCCAAATAATGAAAGAATAGTTTAC
* ** *
22123591 GAAGCCTTTTTCCAGGTAATGAAAGAATGGTTTAC
1 GAAGCCTTCTTCCAAATAATGAAAGAATAGTTTAC
22123626 TGAGTATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Consensus pattern (35 bp):
GAAGCCTTCTTCCAAATAATGAAAGAATAGTTTAC
Found at i:22127582 original size:120 final size:119
Alignment explanation
Indices: 22127370--22127602 Score: 358
Period size: 120 Copynumber: 1.9 Consensus size: 119
22127360 AAGATATGCT
* * * *
22127370 TCGTTGTTGTGTTTTAAAGTTTGAAGGTAATCGGGAAAATATTTATCTTTTGTTGAATTTGCATA
1 TCGTTGTTGTGTTTTAAAGTTTGAAGGTAACCGGGAAAATATTTACCTTTAGTTGAATTCGCATA
* **
22127435 TAATAATAATTTTCAATCGAGCATAAAGATGGCGTCGTATGAAGCATTGTATCG
66 TAATAATAATTTTCAATCAAGCATAAAGATGGCACCGTATGAAGCATTGTATCG
**
22127489 TCGTTGTTGTGTTTTAGGGTTTGAAGGTAACCGGGAAAAATATTTACCTTTAGTTGAATTCGCAT
1 TCGTTGTTGTGTTTTAAAGTTTGAAGGTAACCGGG-AAAATATTTACCTTTAGTTGAATTCGCAT
* *
22127554 ATAATAATATTTTTCGATCAAGCATAAAGATGGCACCGTATGAAGCATT
65 ATAATAATAATTTTCAATCAAGCATAAAGATGGCACCGTATGAAGCATT
22127603 AGATGGTTGT
Statistics
Matches: 102, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
119 32 0.31
120 70 0.69
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (119 bp):
TCGTTGTTGTGTTTTAAAGTTTGAAGGTAACCGGGAAAATATTTACCTTTAGTTGAATTCGCATA
TAATAATAATTTTCAATCAAGCATAAAGATGGCACCGTATGAAGCATTGTATCG
Found at i:22130213 original size:57 final size:57
Alignment explanation
Indices: 22130106--22130244 Score: 147
Period size: 57 Copynumber: 2.4 Consensus size: 57
22130096 TATAGACAAT
* *
22130106 AGGATTACTAGTCCATGCTAAATCCTGTCTACAATATATACTCAATAGAGCTTAGTC
1 AGGATTACTAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGTC
* * * * *
22130163 AGGATTACTAGTCTAGGCTAAATCCTTTTTACGACATATGCTCTAA-AGAGCTT-GATC
1 AGGATTACTAGTCCAGGCTAAATCCTGTCTACAACATATACTC-AATAGAGCTTAG-TC
* * **
22130220 TGGATTTCCCGTCCAGGCTAAATCC
1 AGGATTACTAGTCCAGGCTAAATCC
22130245 AATCCATAAC
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
56 1 0.01
57 65 0.96
58 2 0.03
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (57 bp):
AGGATTACTAGTCCAGGCTAAATCCTGTCTACAACATATACTCAATAGAGCTTAGTC
Found at i:22132022 original size:46 final size:48
Alignment explanation
Indices: 22131854--22132078 Score: 237
Period size: 47 Copynumber: 4.7 Consensus size: 48
22131844 CATAGGGTAT
* * *
22131854 AATGCTGATGCCATGTCCCAAACATGGTCTTACACTTGCTCTCACAT-T-
1 AATGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATCTC
* * * *
22131902 AA-GTCGATTCCATGTCCCAGACATCGTCTTACACTGACTCTCACATATC
1 AATGCCGATGCCATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATCTC
* * *
22131951 CATGTCGAAGCCATGTCCCAGACATGTCTTACACTGGCT-TACATCTC
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTC
* * * *
22131998 GAGGCCGATG-CATGTCCCAGACATGTCTTACAATAGCTCT-CATCTC
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTC
*
22132044 AATCCCGATGCCATGTCCCAGACATGTCTTACACT
1 AATGCCGATGCCATGTCCCAGACATGTCTTACACT
22132079 AGCGTACAAA
Statistics
Matches: 150, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
46 39 0.26
47 73 0.49
48 4 0.03
49 14 0.09
50 20 0.13
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.28
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGTCTTACACTGGCTCTACATCTC
Found at i:22132076 original size:93 final size:95
Alignment explanation
Indices: 22131860--22132078 Score: 243
Period size: 93 Copynumber: 2.3 Consensus size: 95
22131850 GTATAATGCT
* * *
22131860 GATGCCATGTCCCAAACATGGTCTTACACTTGCTCTCACATTAAGTCGATTCCATGTCCCAGACA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGGCTCTCACATTAAGCCGATTCCATGTCCCAGACA
* * **
22131925 TCGTCTTACACTGACTCTCACATATCCATGTC
65 TCGTCTTACAATGACTCT-ACATATCAATCCC
* * *
22131957 GAAGCCATGTCCCAGACATGTCTTACACTGGCT-T-ACATCTCGAGGCCGA-TGCATGTCCCAGA
1 GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCACAT-T--AAGCCGATTCCATGTCCCAGA
*
22132019 CAT-GTCTTACAAT-AGCTCT-CATCTCAATCCC
63 CATCGTCTTACAATGA-CTCTACATATCAATCCC
22132050 GATGCCATGTCCCAGACATGTCTTACACT
1 GATGCCATGTCCCAGACATGTCTTACACT
22132079 AGCGTACAAA
Statistics
Matches: 106, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
93 36 0.34
94 5 0.05
95 15 0.14
96 28 0.26
97 22 0.21
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.28
Consensus pattern (95 bp):
GATGCCATGTCCCAGACATGTCTTACACTGGCTCTCACATTAAGCCGATTCCATGTCCCAGACAT
CGTCTTACAATGACTCTACATATCAATCCC
Found at i:22134979 original size:46 final size:46
Alignment explanation
Indices: 22134929--22135094 Score: 196
Period size: 46 Copynumber: 3.6 Consensus size: 46
22134919 TGGTTGAGCA
22134929 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
22134975 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
22135020 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
22135068 CCCGAGCTCGTTGAGTTGAGTCCGAGT
1 TCCGAACTCGTTGAGTTGAGTCCGAGT
22135095 GTACTTAGGG
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 54 0.53
47 29 0.29
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22135085 original size:93 final size:93
Alignment explanation
Indices: 22134926--22135094 Score: 302
Period size: 93 Copynumber: 1.8 Consensus size: 93
22134916 GGATGGTTGA
* * *
22134926 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
22134991 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22135019 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
22135084 TGAGTCCGAGT
66 TGAGTCCGAGT
22135095 GTACTTAGGG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22150964 original size:82 final size:81
Alignment explanation
Indices: 22150845--22151000 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
22150835 AAATTGTACA
* * * * *
22150845 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
22150909 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
22150926 GCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGGGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
22150991 TGCGAGTTGA
65 TGCGAATTGA
22151001 TTGTATAGCA
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 15 0.24
82 48 0.76
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (81 bp):
GCACTAAGGGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22150984 original size:55 final size:54
Alignment explanation
Indices: 22150845--22151021 Score: 189
Period size: 54 Copynumber: 3.3 Consensus size: 54
22150835 AAATTGTACA
* * * *
22150845 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGATGAATATGAT
* * * *
22150899 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGAT-GAATATGAT
* * *
22150953 GGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTG-AT-TGTAT
1 -GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGATGAATATG-AT
*
22151007 AGCACTGAGTGTGCG
1 -GCACTAAGTGTGCG
22151022 GGCTCAATAT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 54 0.53
55 45 0.44
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGATGAATATGAT
Found at i:22151002 original size:27 final size:27
Alignment explanation
Indices: 22150845--22151000 Score: 170
Period size: 27 Copynumber: 5.7 Consensus size: 27
22150835 AAATTGTACA
* * *
22150845 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
22150872 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
22150899 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
22150926 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
22150954 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
22150981 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
22151001 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 18, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:22151011 original size:27 final size:27
Alignment explanation
Indices: 22150845--22151021 Score: 149
Period size: 27 Copynumber: 6.5 Consensus size: 27
22150835 AAATTGTACA
* * * *
22150845 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAGTTGATTATGTG
* ** *
22150872 GCACTCAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAGTTGATTATG-TG
* ** *
22150899 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATTATGTG
* *
22150926 GCACTAAGTGTGCGAGATGGACTATGTG
1 GCACTAAGTGTGCGAG-TTGATTATGTG
* *
22150954 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTATGTG
* * *
22150981 GCACTAAGTGTGCGAGTTGATTGTATA
1 GCACTAAGTGTGCGAGTTGATTATGTG
*
22151008 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
22151022 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 99 0.80
28 24 0.20
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTATGTG
Found at i:22151012 original size:82 final size:81
Alignment explanation
Indices: 22150837--22151021 Score: 192
Period size: 82 Copynumber: 2.3 Consensus size: 81
22150827 GCGGGATTAA
* * * * * *
22150837 ATTGTACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCA
22150902 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
22150918 ACCATGCGGCACTAAGTGTGCGAGATGGACTATGTGGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGA-ATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGAT-G
*
22150982 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
22151000 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
22151022 GGCTCAATAT
Statistics
Matches: 80, Mismatches: 22, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
81 18 0.22
82 62 0.77
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAATGGACTATGTGGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:22155799 original size:49 final size:47
Alignment explanation
Indices: 22155680--22156041 Score: 235
Period size: 46 Copynumber: 7.7 Consensus size: 47
22155670 GGTATAATGT
* * * *
22155680 CGATGCCATGTCCTAGACATGGTCTTACACTGGCTCATC-CATCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACT-ATCAAATCAAGC
*
22155727 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATC-AAATC-AAGC
* ** * *
22155776 CGACGCCATGTCCTGGACATGGTCTTACACT-AGCTCTCATATATCCATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCA-A-AT-CAAGC
* ***
22155826 CGATGCCATGTCCCAGACATGGTCTTACGCTGAC-A-CATCGCATAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCA-AGC
* * * ** *
22155872 CGAT-ACATGTCCCAGGCAT-GTCTTACACTGGCT-TACATCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTAT-CAAATC-AAGC
* * * ***
22155918 TGATG-CATGTCCTAGACAT-GTCTTACACT-AGCTCTCGTCTCAATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCAAATCAA-GC
* * ***
22155964 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-AATCAAGC
*
22156012 TGATG-CATGTCCCAGACAT-GTCTTACACTG
1 CGATGCCATGTCCCAGACATGGTCTTACACTG
22156042 GCACACAAGT
Statistics
Matches: 253, Mismatches: 41, Indels: 43
0.75 0.12 0.13
Matches are distributed among these distances:
44 11 0.04
45 16 0.06
46 65 0.26
47 62 0.25
48 28 0.11
49 36 0.14
50 33 0.13
51 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAATCAAGC
Found at i:22155989 original size:94 final size:96
Alignment explanation
Indices: 22155675--22156041 Score: 330
Period size: 94 Copynumber: 3.9 Consensus size: 96
22155665 CACAAGGTAT
* * * * *
22155675 AATGTCGATGCCATGTCCTAGACATGGTCTTACACTGG--CTCATCCATCAAGTC-GATGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-AATCGAGGCTGATGCCATG
* **
22155737 TCCCAGACATGGTCTTACACTGACTATCGAAATC
65 TCCCAGACATGGTCTTACACTG-CTCTCG-TCTC
* * * ** * * * *
22155771 GAGGCCGACGCCATGTCCTGGACATGGTCTTACACTAGCTCTCATATATCCATGCCGATGCCATG
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-ATCGAGGCTGATGCCATG
* * * * *
22155836 TCCCAGACATGGTCTTACGCTG-ACACATCGC
65 TCCCAGACATGGTCTTACACTGCTCTCGTCTC
* * *
22155867 -ATAGCCGAT-ACATGTCCCAGGCAT-GTCTTACACTGGCT-TACAT-CTCGAGGCTGATG-CAT
1 AAT-GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAATCGAGGCTGATGCCAT
*
22155926 GTCCTAGACAT-GTCTTACACTAGCTCTCGTCTC
64 GTCCCAGACATGGTCTTACACT-GCTCTCGTCTC
*
22155959 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCTGATG-CATGT
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGAGGCTGATGCCATGT
22156022 CCCAGACAT-GTCTTACACTG
66 CCCAGACATGGTCTTACACTG
22156042 GCACACAAGT
Statistics
Matches: 218, Mismatches: 40, Indels: 29
0.76 0.14 0.10
Matches are distributed among these distances:
90 9 0.04
91 14 0.06
92 20 0.09
93 17 0.08
94 65 0.30
95 14 0.06
96 38 0.17
97 1 0.00
98 10 0.05
99 30 0.14
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (96 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATCGAGGCTGATGCCATGT
CCCAGACATGGTCTTACACTGCTCTCGTCTC
Found at i:22163197 original size:43 final size:43
Alignment explanation
Indices: 22163060--22163223 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
22163050 ATTGGATTTC
* * **
22163060 CGATATGTGATTTTGTGTAAGACCACATCTGGGAC-GTTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAG-TGGCAT
* * * * * *
22163103 TGAT-TTGAGATTTACGTGTAAGACAATGTCTAGGACA-TCAGAAT
1 CGATATT-TGATTT-CGTGTAAGACCATGTCTGGGACAGT-GGCAT
*
22163147 CG-TATTTGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCAT
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
* * *
22163189 CGATATTTGATTACATGTAAGACCATGTTTGGGAC
1 CGATATTTGATTTCGTGTAAGACCATGTCTGGGAC
22163224 GTTGGTATTG
Statistics
Matches: 93, Mismatches: 21, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
42 26 0.28
43 44 0.47
44 23 0.25
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
CGATATTTGATTTCGTGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:22166239 original size:40 final size:40
Alignment explanation
Indices: 22166192--22166436 Score: 352
Period size: 40 Copynumber: 6.1 Consensus size: 40
22166182 CGGGCTTTAA
* * *
22166192 CCGGATATAGCCACTCGCTCAATTGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* *
22166232 CCGGATATAGT-AGTTCGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTCA-CTCGCACAAATGCCTTCGGGACTTAGC
*
22166272 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
22166312 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
*
22166352 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
* *
22166392 CTGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGC
22166432 CCGGA
1 CCGGA
22166437 ATTATCATCC
Statistics
Matches: 191, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 2 0.01
40 188 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTCACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22174202 original size:40 final size:40
Alignment explanation
Indices: 22173994--22174198 Score: 322
Period size: 40 Copynumber: 5.1 Consensus size: 40
22173984 CGGGCTTTAA
** *
22173994 CCGGATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
** *
22174034 CCGGATATAGTAGTTCGCACAAATGTCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
22174074 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
22174114 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22174154 CCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGC
22174194 CCGGA
1 CCGGA
22174199 ATTATCATCC
Statistics
Matches: 153, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 152 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22176857 original size:79 final size:78
Alignment explanation
Indices: 22176721--22176938 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
22176711 TTGAATGATG
* * * * *
22176721 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGG-TTAAG-TCCGAAGGCAAT
*
22176785 TGTGTGAGATACTA-A
63 TGTGCGAGATACTATA
*
22176800 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGTTAAGTCCCGAAGGCAAT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCG-GTTAAGT-CCGAAGGCAAT
*
22176864 TGTGCGAGTTACTATA
63 TGTGCGAGATACTATA
* * * *
22176880 ACCGGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGTT-AAGTCCGAAGG
22176939 TACGTGATTT
Statistics
Matches: 118, Mismatches: 13, Indels: 15
0.81 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 67 0.57
80 50 0.42
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGTTAAGTCCGAAGGCAATTGT
GCGAGATACTATA
Found at i:22176919 original size:40 final size:40
Alignment explanation
Indices: 22176722--22176912 Score: 194
Period size: 40 Copynumber: 4.8 Consensus size: 40
22176712 TGAATGATGT
* * * *
22176722 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * * *
22176762 CCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
22176802 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* * *
22176840 TCCGAGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
22176881 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
22176913 AGCTATATCC
Statistics
Matches: 126, Mismatches: 18, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 33 0.26
40 84 0.67
41 9 0.07
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:22179950 original size:27 final size:27
Alignment explanation
Indices: 22179919--22180096 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
22179909 TAAATTGTAC
*
22179919 AGCACTAAGTGTGTGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22179946 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22179972 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22180000 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22180028 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22180055 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22180082 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22180097 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22180033 original size:82 final size:81
Alignment explanation
Indices: 22179920--22180075 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
22179910 AAATTGTACA
* * *
22179920 GCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22179984 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22180001 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22180066 TGCGAGTTGA
65 TGCGAATTGA
22180076 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22180087 original size:82 final size:81
Alignment explanation
Indices: 22179916--22180096 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
22179906 GATTAAATTG
* * *
22179916 TACAGCACTAAGTGTGTGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22179981 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
22179997 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22180061 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22180079 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22180097 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22188130 original size:27 final size:27
Alignment explanation
Indices: 22188099--22188276 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
22188089 TAAATTGTAC
*
22188099 AGCACTAAGTGTTCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22188126 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22188152 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22188180 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22188208 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22188235 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22188262 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22188277 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22188213 original size:82 final size:81
Alignment explanation
Indices: 22188100--22188255 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
22188090 AAATTGTACA
* * *
22188100 GCACTAAGTGTTCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22188164 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
22188181 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
22188246 TGCGAGTTGA
65 TGCGAATTGA
22188256 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 14 0.21
82 51 0.77
83 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:22188267 original size:82 final size:81
Alignment explanation
Indices: 22188096--22188276 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
22188086 GATTAAATTG
* * *
22188096 TACAGCACTAAGTGTTCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
22188161 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
22188177 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
22188241 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
22188259 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
22188277 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 17 0.20
82 66 0.80
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:22196252 original size:26 final size:26
Alignment explanation
Indices: 22196216--22196277 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 26
22196206 TTAGCTCGTA
*
22196216 TGAGCATCCCGATTAAA-GCCTCTTTG
1 TGAGCTTCCCG-TTAAATGCCTCTTTG
*
22196242 TGAGCTTCCCGTTAAATTGGCTCTTTG
1 TGAGCTTCCCGTTAAA-TGCCTCTTTG
22196269 TGAGCTTCC
1 TGAGCTTCC
22196278 TGATAGTGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 5 0.16
26 10 0.31
27 17 0.53
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (26 bp):
TGAGCTTCCCGTTAAATGCCTCTTTG
Found at i:22198266 original size:43 final size:43
Alignment explanation
Indices: 22198205--22198418 Score: 222
Period size: 43 Copynumber: 5.0 Consensus size: 43
22198195 GAGCTTCCGA
* *
22198205 GATATATGATATCGTGTAAGACCCTATCTGGGACAGTGGCATC
1 GATATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
*
22198248 GATATATGATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATC
1 GATATATGATTTCGTGTAAGACC-CTGTCTGGGACAG-TGGCATC
* * *
22198291 GATTTGA-GATTTTCGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATAT-ATGA-TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * *
22198335 -ATATTTAATTTCGTGTAAGACCCTGTCTGGGACAATGGCATC
1 GATATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
* * * * *
22198377 GATATTTGATTACATGTAAGACCAC-GTCTAGGACATTGGCAT
1 GATATATGATTTCGTGTAAGACC-CTGTCTGGGACAGTGGCAT
22198419 TGTACGAGTT
Statistics
Matches: 145, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
42 33 0.23
43 80 0.55
44 32 0.22
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
GATATATGATTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
Found at i:22201031 original size:28 final size:27
Alignment explanation
Indices: 22200980--22201032 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
22200970 TGAATTTGAG
*
22200980 AATTAGGGCTAAATTGTAGAAATAATA
1 AATTAGGGCTAAAATGTAGAAATAATA
22201007 AATTGAGGGACTAAAATGTA-AAATAA
1 AATT-AGGG-CTAAAATGTAGAAATAA
22201033 ATGAAATGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 10 0.43
29 9 0.39
ACGTcount: A:0.51, C:0.04, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTAGGGCTAAAATGTAGAAATAATA
Found at i:22201595 original size:43 final size:43
Alignment explanation
Indices: 22201534--22201847 Score: 466
Period size: 43 Copynumber: 7.3 Consensus size: 43
22201524 CATAAAATTT
*
22201534 TCGATGTGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * *
22201577 TCGATATGTGATTACGTGTAAGACAACGTCTAGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
*
22201620 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* *
22201663 TCGATATGTGATTACGTGTAAGACCATGTCTGGGATGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* *
22201706 TCAATATGTGATTACGTGTAAGACCACGTTTGGGACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * *
22201749 TCGATATGTGATTACGTGTAAGATCATGTCTGGGACATTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * ***
22201792 TCGGTATGTGATTACGAGTAAGACCACGTTTAATACGTTGGCA
1 TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
22201835 TCGATATGTGATT
1 TCGATATGTGATT
22201848 CTGATATGTG
Statistics
Matches: 243, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 243 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
TCGATATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:22201882 original size:56 final size:56
Alignment explanation
Indices: 22201796--22201928 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
22201786 TTGGCATCGG
*
22201796 TATGTGAT-TACGAGTAAGACCACGTTTAATACGTTGGCATCGATAT-GTGATTCTGA
1 TATGTG-TGTACGAGTAAGACCACGTTTAATACGTTGGCATCAAT-TGGTGATTCTGA
* * * * *
22201852 TATGTGTGTGCGAGCAAGACCACGTTTAATACTTTGGTATCAATTGGTGATTTTGA
1 TATGTGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCAATTGGTGATTCTGA
*
22201908 TATGTGTTTACGAGTAAGACC
1 TATGTGTGTACGAGTAAGACC
22201929 CTTTCTAAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
55 2 0.03
56 64 0.97
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (56 bp):
TATGTGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCAATTGGTGATTCTGA
Found at i:22204722 original size:27 final size:27
Alignment explanation
Indices: 22204680--22204803 Score: 144
Period size: 27 Copynumber: 4.6 Consensus size: 27
22204670 ACCTCACAAC
* *
22204680 AGGGGTATTACCGTCATTTTACCCTAT
1 AGGGGTATTTCGGTCATTTTACCCTAT
* * *
22204707 AGGGGTATTTCAGTCATTTTATCCAAT
1 AGGGGTATTTCGGTCATTTTACCCTAT
*
22204734 -GAGGGTATTTCGGTCATTTAACCCTAT
1 AG-GGGTATTTCGGTCATTTTACCCTAT
**
22204761 TTGGGTATTTCGGTCATTTTACCCTAT
1 AGGGGTATTTCGGTCATTTTACCCTAT
*
22204788 GGGGGTATTT-GGTCAT
1 AGGGGTATTTCGGTCAT
22204804 CATTTCAGCC
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.08
27 76 0.92
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (27 bp):
AGGGGTATTTCGGTCATTTTACCCTAT
Found at i:22204750 original size:54 final size:54
Alignment explanation
Indices: 22204659--22204803 Score: 157
Period size: 54 Copynumber: 2.6 Consensus size: 54
22204649 GTAGGACAAA
** * * *
22204659 TCAGTCATTTTACCTCACAACAGGGGTATTACCGTCATTTTACCCTATAGGGGTATT
1 TCAGTCATTTTACC-CA-ATGA-GGGTATTTCGGTCATTTAACCCTATAGGGGTATT
* **
22204716 TCAGTCATTTTATCCAATGAGGGTATTTCGGTCATTTAACCCTATTTGGGTATT
1 TCAGTCATTTTACCCAATGAGGGTATTTCGGTCATTTAACCCTATAGGGGTATT
* * *
22204770 TCGGTCATTTTACCCTATGGGGGTATTT-GGTCAT
1 TCAGTCATTTTACCCAATGAGGGTATTTCGGTCAT
22204804 CATTTCAGCC
Statistics
Matches: 76, Mismatches: 12, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 6 0.08
54 53 0.70
55 2 0.03
56 2 0.03
57 13 0.17
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.39
Consensus pattern (54 bp):
TCAGTCATTTTACCCAATGAGGGTATTTCGGTCATTTAACCCTATAGGGGTATT
Found at i:22209711 original size:17 final size:17
Alignment explanation
Indices: 22209685--22209719 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
22209675 TTATGATTCA
22209685 TTTTTCTTCTCTT-CTC
1 TTTTTCTTCTCTTGCTC
22209701 TTTTTCATTCTCTTGCTC
1 TTTTTC-TTCTCTTGCTC
22209719 T
1 T
22209720 CTTAATTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 7 0.41
18 4 0.24
ACGTcount: A:0.03, C:0.29, G:0.03, T:0.66
Consensus pattern (17 bp):
TTTTTCTTCTCTTGCTC
Found at i:22211073 original size:20 final size:20
Alignment explanation
Indices: 22211030--22211077 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
22211020 GCTGTTTTGT
22211030 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
22211050 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
22211069 TAT-GGCCAA
1 TATGGGCCAA
22211078 GACCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:22213958 original size:17 final size:19
Alignment explanation
Indices: 22213916--22213959 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
22213906 ACGAAATTTT
*
22213916 AATTAGTATTATGAGATAA
1 AATTATTATTATGAGATAA
*
22213935 AATTATTATTATTAGA-AA
1 AATTATTATTATGAGATAA
22213953 AA-TATTA
1 AATTATTA
22213960 CTACATGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 4 0.17
19 14 0.61
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
AATTATTATTATGAGATAA
Found at i:22214073 original size:15 final size:15
Alignment explanation
Indices: 22214055--22214083 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
22214045 ATATTTATAA
22214055 AATTATTATTATTAT
1 AATTATTATTATTAT
22214070 AATTATTATTATTA
1 AATTATTATTATTA
22214084 GATAGGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
AATTATTATTATTAT
Found at i:22215687 original size:16 final size:15
Alignment explanation
Indices: 22215658--22215691 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
22215648 ACTAGATCGG
22215658 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
*
22215673 CAAAATGCCGGAAAGC
1 CAAAA-GCCGAAAAGC
22215689 CAA
1 CAA
22215692 CATTTTGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.50, C:0.26, G:0.21, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:22216344 original size:20 final size:20
Alignment explanation
Indices: 22216301--22216348 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
22216291 GCTATTTTGT
22216301 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
22216321 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
22216340 TAT-GGCCAA
1 TATGGGCCAA
22216349 GGCCTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:22218474 original size:25 final size:25
Alignment explanation
Indices: 22218446--22218522 Score: 83
Period size: 25 Copynumber: 3.3 Consensus size: 25
22218436 AAAAAATTGA
22218446 TAAAAAAGTCAAATAAGGATTATAT
1 TAAAAAAGTCAAATAAGGATTATAT
* *
22218471 TAAAAAA-T-AGA-AA--ATTTTAT
1 TAAAAAAGTCAAATAAGGATTATAT
* *
22218491 AAAAAAAGTCAAATAGGGATTATAT
1 TAAAAAAGTCAAATAAGGATTATAT
22218516 TAAAAAA
1 TAAAAAA
22218523 TAGAAAATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 10
0.70 0.12 0.18
Matches are distributed among these distances:
20 12 0.30
21 1 0.03
22 4 0.10
23 3 0.08
24 1 0.03
25 19 0.47
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (25 bp):
TAAAAAAGTCAAATAAGGATTATAT
Found at i:22218485 original size:26 final size:25
Alignment explanation
Indices: 22218456--22218530 Score: 65
Period size: 26 Copynumber: 3.2 Consensus size: 25
22218446 TAAAAAAGTC
22218456 AAATAAGGATTATATTAAAAAATAGA
1 AAAT-AGGATTATATTAAAAAATAGA
*
22218482 AAAT----TT-TA-TAAAAAA-AGTC
1 AAATAGGATTATATTAAAAAATAG-A
22218501 AAATAGGGATTATATTAAAAAATAGA
1 AAATA-GGATTATATTAAAAAATAGA
22218527 AAAT
1 AAAT
22218531 TTTACATGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 18
0.66 0.03 0.31
Matches are distributed among these distances:
18 2 0.05
19 11 0.29
20 2 0.05
21 2 0.05
24 2 0.05
25 2 0.05
26 15 0.39
27 2 0.05
ACGTcount: A:0.60, C:0.01, G:0.11, T:0.28
Consensus pattern (25 bp):
AAATAGGATTATATTAAAAAATAGA
Found at i:22218502 original size:45 final size:45
Alignment explanation
Indices: 22218447--22218534 Score: 167
Period size: 45 Copynumber: 2.0 Consensus size: 45
22218437 AAAAATTGAT
22218447 AAAAAAGTCAAATAAGGATTATATTAAAAAATAGAAAATTTTATA
1 AAAAAAGTCAAATAAGGATTATATTAAAAAATAGAAAATTTTATA
*
22218492 AAAAAAGTCAAATAGGGATTATATTAAAAAATAGAAAATTTTA
1 AAAAAAGTCAAATAAGGATTATATTAAAAAATAGAAAATTTTA
22218535 CATGGTGAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.59, C:0.02, G:0.10, T:0.28
Consensus pattern (45 bp):
AAAAAAGTCAAATAAGGATTATATTAAAAAATAGAAAATTTTATA
Found at i:22220583 original size:55 final size:53
Alignment explanation
Indices: 22220472--22220666 Score: 187
Period size: 55 Copynumber: 3.6 Consensus size: 53
22220462 ATTAGGGTTT
* * * * ** *
22220472 AAGGATACCATGTAAGACCATGCCAAGGCAAGCCAATTGGTAAGGTTTC-TACGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTAATAA-G-TTCATAAGGC
* *
22220527 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTAATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATAAGTT-C-ATAAGGC
* * * ** *
22220582 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATAAGTTCATAAGGC
22220635 AAGGATACCATGTAAGACCATGTCAAGACATG
1 AAGGATACCATGTAAGACCATGTCAAGACATG
22220667 ACAATGGTAA
Statistics
Matches: 115, Mismatches: 20, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
52 6 0.05
53 33 0.29
54 7 0.06
55 65 0.57
56 4 0.03
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCATTAATAAGTTCATAAGGC
Found at i:22220821 original size:23 final size:24
Alignment explanation
Indices: 22220795--22220839 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
22220785 AAGGTAAGGT
*
22220795 AAGGTAAGACGAGTT-ATGCTAAA
1 AAGGTAAGACAAGTTCATGCTAAA
22220818 AAGGTAAGACAAGTTCATGCTA
1 AAGGTAAGACAAGTTCATGCTA
22220840 GAAGAGCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.42, C:0.11, G:0.24, T:0.22
Consensus pattern (24 bp):
AAGGTAAGACAAGTTCATGCTAAA
Found at i:22220939 original size:16 final size:16
Alignment explanation
Indices: 22220918--22220948 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22220908 ATAAATTTGA
22220918 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
22220934 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
22220949 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:22225188 original size:39 final size:39
Alignment explanation
Indices: 22225131--22225242 Score: 179
Period size: 39 Copynumber: 2.9 Consensus size: 39
22225121 ATATATATGT
* *
22225131 GAGAATTATATCCTGACTTCAGGTCCGTAGGCTATAAGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
* *
22225170 GAGAATTATATCCGGACTTCATGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
*
22225209 AAGAATTATATCCGGACTTCAGGTCCGCAGGCTA
1 GAGAATTATATCCGGACTTCAGGTCCGCAGGCTA
22225243 CGTGCTGGAC
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Consensus pattern (39 bp):
GAGAATTATATCCGGACTTCAGGTCCGCAGGCTATAAGC
Found at i:22225489 original size:15 final size:16
Alignment explanation
Indices: 22225464--22225498 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
22225454 GTATGTATAG
22225464 ATATACGTATCGATGA
1 ATATACGTATCGATGA
*
22225480 ATAT-CGTATCTATGA
1 ATATACGTATCGATGA
22225495 ATAT
1 ATAT
22225499 GAAAATAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (16 bp):
ATATACGTATCGATGA
Found at i:22235748 original size:34 final size:34
Alignment explanation
Indices: 22235708--22235805 Score: 142
Period size: 34 Copynumber: 2.9 Consensus size: 34
22235698 GTGAAAACAT
* * * *
22235708 TCTGGGCCTAAGCCCATATCAGTGACAGTAGTAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
*
22235742 TTTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
*
22235776 TCTGGGCTTTAGCCCATTTCAGTAACAGTA
1 TCTGGGCCTTAGCCCATTTCAGTAACAGTA
22235806 ATCAGTGCAG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 57 1.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (34 bp):
TCTGGGCCTTAGCCCATTTCAGTAACAGTAGCAG
Found at i:22235818 original size:18 final size:18
Alignment explanation
Indices: 22235795--22235844 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
22235785 TAGCCCATTT
* *
22235795 CAGTAACAGTAATCAGTG
1 CAGTAACAGTAATCAATA
*
22235813 CAGTAACCA-TGATCAATA
1 CAGTAA-CAGTAATCAATA
22235831 CAGTAACAGTAATC
1 CAGTAACAGTAATC
22235845 GGTGTAATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 2 0.08
18 22 0.85
19 2 0.08
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (18 bp):
CAGTAACAGTAATCAATA
Found at i:22236235 original size:27 final size:27
Alignment explanation
Indices: 22236193--22236252 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
22236183 GAATAAATCT
*
22236193 GTCATTTTACCTTACAAGGGTATTACA
1 GTCATTTTACCCTACAAGGGTATTACA
* **
22236220 GTCATTTTACCCTACAATGGTATTTTA
1 GTCATTTTACCCTACAAGGGTATTACA
22236247 GTCATT
1 GTCATT
22236253 CCACCCTATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTACA
Found at i:22236258 original size:27 final size:27
Alignment explanation
Indices: 22236205--22236260 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
22236195 CATTTTACCT
**
22236205 TACAAGGGTATTACAGTCATTTTACCC
1 TACAAGGGTATTACAGTCATTCCACCC
* **
22236232 TACAATGGTATTTTAGTCATTCCACCC
1 TACAAGGGTATTACAGTCATTCCACCC
22236259 TA
1 TA
22236261 TGGGGGTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (27 bp):
TACAAGGGTATTACAGTCATTCCACCC
Found at i:22236278 original size:27 final size:27
Alignment explanation
Indices: 22236248--22236306 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
22236238 GGTATTTTAG
* *
22236248 TCATTCCACCCTATGGGGGTATTTCGA
1 TCATTCCACCCTATGAGGGAATTTCGA
** *
22236275 TCATTTTACCTTATGAGGGAATTTCGA
1 TCATTCCACCCTATGAGGGAATTTCGA
22236302 TCATT
1 TCATT
22236307 TGATCACATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (27 bp):
TCATTCCACCCTATGAGGGAATTTCGA
Found at i:22236467 original size:81 final size:80
Alignment explanation
Indices: 22236302--22236530 Score: 334
Period size: 81 Copynumber: 2.9 Consensus size: 80
22236292 GGAATTTCGA
* * *
22236302 TCATTTGATCACATAAGGGAAAAATCAACATTTTATCACA-CGGGTAAAATCATCATTTTATCAC
1 TCATTTTATCACATAAGGGAAAAATCATCATTTTATCACATAGGGTAAAATCATCATTTTATCAC
* * *
22236366 ATAAGGGCCAAATCG
66 ATGAGGACAAAATCG
* *
22236381 TCATTTTATCACATAAGGGAAAAATCATCATTTTATCACATGAGGGAAAAATCATTATTTTATCA
1 TCATTTTATCACATAAGGGAAAAATCATCATTTTATCACAT-AGGGTAAAATCATCATTTTATCA
22236446 CATGAGGACAAAATCG
65 CATGAGGACAAAATCG
* * *
22236462 TCATTTTATCACATGAGGGCAAAATCATCATTTTATCACATAAGGGTAAAATCGTCATTTTATCA
1 TCATTTTATCACATAAGGGAAAAATCATCATTTTATCACAT-AGGGTAAAATCATCATTTTATCA
22236527 CATG
65 CATG
22236531 TGGGTTCAGG
Statistics
Matches: 134, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
79 38 0.28
81 96 0.72
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.31
Consensus pattern (80 bp):
TCATTTTATCACATAAGGGAAAAATCATCATTTTATCACATAGGGTAAAATCATCATTTTATCAC
ATGAGGACAAAATCG
Found at i:22236535 original size:27 final size:27
Alignment explanation
Indices: 22236301--22236529 Score: 293
Period size: 27 Copynumber: 8.6 Consensus size: 27
22236291 GGGAATTTCG
*
22236301 ATCATTTGATCACATAAGGGAAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
* * *
22236328 AACATTTTATCAC--ACGGGTAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
**
22236353 ATCATTTTATCACATAAGGGCCAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
*
22236380 GTCATTTTATCACATAAGGGAAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
*
22236407 ATCATTTTATCACATGAGGGAAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
* *
22236434 ATTATTTTATCACATGA-GGACAAAATC
1 ATCATTTTATCACATAAGGGA-AAAATC
* * *
22236461 GTCATTTTATCACATGAGGGCAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
*
22236488 ATCATTTTATCACATAAGGGTAAAATC
1 ATCATTTTATCACATAAGGGAAAAATC
*
22236515 GTCATTTTATCACAT
1 ATCATTTTATCACAT
22236530 GTGGGTTCAG
Statistics
Matches: 177, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
25 22 0.12
26 3 0.02
27 150 0.85
28 2 0.01
ACGTcount: A:0.39, C:0.17, G:0.13, T:0.31
Consensus pattern (27 bp):
ATCATTTTATCACATAAGGGAAAAATC
Found at i:22238521 original size:93 final size:93
Alignment explanation
Indices: 22238409--22238580 Score: 294
Period size: 93 Copynumber: 1.8 Consensus size: 93
22238399 CGCCCATAAG
*
22238409 CGAACTCGGACTCAACTCAACGAGCTT--GAGCGTTCGCATCCATAAGTGAACTCGGACTCAACT
1 CGAACTCGGACTCAACTCAACGAG-TTCGGA-CATTCGCATCCATAAGTGAACTCGGACTCAACT
22238472 CAACGAGTTCGGATGCCTAGTTACATCTCA
64 CAACGAGTTCGGATGCCTAGTTACATCTCA
*
22238502 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTTGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22238567 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
22238581 TCAACCATCC
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
92 2 0.03
93 71 0.95
94 2 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:22238576 original size:46 final size:47
Alignment explanation
Indices: 22238402--22238577 Score: 204
Period size: 46 Copynumber: 3.8 Consensus size: 47
22238392 TGTAACCCGC
*
22238402 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT--GAGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAG-TTCGGAGCATTCGCAT
* *
22238448 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA-G-C-A-TTCGCAT
*
22238498 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
* *
22238541 CCATAAGTGAACTTGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
22238578 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.52
47 31 0.28
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (47 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGAGCATTCGCAT
Found at i:22238596 original size:46 final size:44
Alignment explanation
Indices: 22238410--22238596 Score: 132
Period size: 46 Copynumber: 4.0 Consensus size: 44
22238400 GCCCATAAGC
* * * *
22238410 GAACTCGGACTCAACTCAACGAGCTT-GAGCGTTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAG-TTCG-G-ATGC-CAACCATCTAGT
*
22238456 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTCA-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT-AGT
* * *
22238503 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AAGT
1 GAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTAGT
*
22238549 GAACTTGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCTAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CTAGT
22238595 GA
1 GA
22238597 CATTTCACTT
Statistics
Matches: 113, Mismatches: 14, Indels: 28
0.73 0.09 0.18
Matches are distributed among these distances:
43 1 0.01
44 12 0.11
45 4 0.04
46 59 0.52
47 31 0.27
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (44 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTAGT
Found at i:22240265 original size:125 final size:125
Alignment explanation
Indices: 22240019--22240256 Score: 395
Period size: 125 Copynumber: 1.9 Consensus size: 125
22240009 TCACTTACCC
* * **
22240019 AAAACGCAGAGTCTAGATTTAGGAGGGAAGAACAATCGGCTCTTACCCATACAAGTTGAGAGTAC
1 AAAACGCAGAGTCCAGATTTAGGAGGGAAGAACAATCAGCTCTTACCCATACAAGTCAAGAGTAC
*
22240084 AAAAAGAATGATAGGGGCGCCCCCAATATCAAAGAACACTTGCAAAAGCCAAAAACACTG
66 AAAAAGAATGATAGAGGCGCCCCCAATATCAAAGAACACTTGCAAAAGCCAAAAACACTG
*
22240144 AAAACGCAGAGTCCAGATTTAGGAGGGAAGAACAATCAGCTCTTGCCCATACAAGTCAAGAGTAC
1 AAAACGCAGAGTCCAGATTTAGGAGGGAAGAACAATCAGCTCTTACCCATACAAGTCAAGAGTAC
* * *
22240209 ATATAGAATGATAGAGGCGCCCCCAATATCAGAGAACACTTGCAAAAG
66 AAAAAGAATGATAGAGGCGCCCCCAATATCAAAGAACACTTGCAAAAG
22240257 TTGAAAACAG
Statistics
Matches: 104, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
125 104 1.00
ACGTcount: A:0.41, C:0.21, G:0.22, T:0.16
Consensus pattern (125 bp):
AAAACGCAGAGTCCAGATTTAGGAGGGAAGAACAATCAGCTCTTACCCATACAAGTCAAGAGTAC
AAAAAGAATGATAGAGGCGCCCCCAATATCAAAGAACACTTGCAAAAGCCAAAAACACTG
Found at i:22242835 original size:18 final size:18
Alignment explanation
Indices: 22242812--22242867 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
22242802 TAGCCCATTT
22242812 CAGTAACAGTAATTAGTG
1 CAGTAACAGTAATTAGTG
* * * *
22242830 CAGTAACCA-TGATCAATA
1 CAGTAA-CAGTAATTAGTG
*
22242848 CAGTAACAGTAATTGGTG
1 CAGTAACAGTAATTAGTG
22242866 CA
1 CA
22242868 ATATGCAACC
Statistics
Matches: 27, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
17 2 0.07
18 23 0.85
19 2 0.07
ACGTcount: A:0.39, C:0.16, G:0.20, T:0.25
Consensus pattern (18 bp):
CAGTAACAGTAATTAGTG
Done.