Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 69 of 259
Found at i:22243178 original size:23 final size:23
Alignment explanation
Indices: 22243129--22243178 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
22243119 ACCCTATGCA
*
22243129 ATGCAACGTAATATCATACATGG
1 ATGCAACATAATATCATACATGG
22243152 ATGCAACATACATAT-A-ACATGG
1 ATGCAACATA-ATATCATACATGG
22243174 CATGC
1 -ATGC
22243179 TCAAATGCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 6 0.25
23 14 0.58
24 4 0.17
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (23 bp):
ATGCAACATAATATCATACATGG
Found at i:22243255 original size:27 final size:27
Alignment explanation
Indices: 22243213--22243278 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
22243203 GAACAAATCT
* *
22243213 GTCATTTTAACTTACAAGGGTATTATA
1 GTCATTTTACCCTACAAGGGTATTATA
* *
22243240 GTCATTTTACCCTACAGGGGTATTTTA
1 GTCATTTTACCCTACAAGGGTATTATA
*
22243267 GTCATTCTACCC
1 GTCATTTTACCC
22243279 CATGGGGGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTATA
Found at i:22243286 original size:27 final size:27
Alignment explanation
Indices: 22243230--22243305 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
22243220 TAACTTACAA
* *
22243230 GGGTATTATAGTCATTTTACCCTACAG
1 GGGTATTTTAGTCATTTTACCCCACAG
* **
22243257 GGGTATTTTAGTCATTCTACCCCATGG
1 GGGTATTTTAGTCATTTTACCCCACAG
**
22243284 GGGTATTTCGGTCATTTTACCC
1 GGGTATTTTAGTCATTTTACCC
22243306 TATGAGGGAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (27 bp):
GGGTATTTTAGTCATTTTACCCCACAG
Found at i:22243318 original size:27 final size:27
Alignment explanation
Indices: 22243240--22243327 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
22243230 GGGTATTATA
* **
22243240 GTCATTTTACCCTA-CAGGGGTATTTTA
1 GTCATTTTACCCTATGA-GGGTATTTCG
* * *
22243267 GTCATTCTACCCCATGGGGGTATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
22243294 GTCATTTTACCCTATGAGGGAATTTCG
1 GTCATTTTACCCTATGAGGGTATTTCG
*
22243321 ATCATTT
1 GTCATTT
22243328 GATCATATAA
Statistics
Matches: 49, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTATGAGGGTATTTCG
Found at i:22243405 original size:27 final size:27
Alignment explanation
Indices: 22243322--22243579 Score: 317
Period size: 27 Copynumber: 9.7 Consensus size: 27
22243312 GGAATTTCGA
* *
22243322 TCATTTGATCATATAA-GGCAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
22243348 TCATTTTATCACATAA-GGTAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
22243374 TCATTTTATCATATAAGGGCAAAATCT
1 TCATTTTATCACATAAGGGCAAAATCG
*
22243401 TCATTTTATCACATAAGGGAAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* * *
22243428 TCATTTTATCATATGAGGGCAAAATTG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
22243455 TCATTTTATCACATGAGGGTAAAATCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
22243482 TCATTTTATCAC--AAGGACAAAATCA
1 TCATTTTATCACATAAGGGCAAAATCG
* *
22243507 TCATTTTATCACATAAGGGCGAAACCG
1 TCATTTTATCACATAAGGGCAAAATCG
* *
22243534 TTATTTTATCACATAAGGGCAAAACCG
1 TCATTTTATCACATAAGGGCAAAATCG
*
22243561 TCATTTTATCACATGAGGG
1 TCATTTTATCACATAAGGG
22243580 TTCAGGTACG
Statistics
Matches: 199, Mismatches: 30, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
25 21 0.11
26 37 0.19
27 141 0.71
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (27 bp):
TCATTTTATCACATAAGGGCAAAATCG
Found at i:22243503 original size:106 final size:106
Alignment explanation
Indices: 22243322--22243580 Score: 351
Period size: 106 Copynumber: 2.4 Consensus size: 106
22243312 GGAATTTCGA
* * * *
22243322 TCATTTGATCATATAAGGCAAAATCGTCATTTTATCACAT-AAGGTAAAATTGTCATTTTATCAT
1 TCATTTTATCATATAGGGCAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATCA-
* * * *
22243386 ATAAGGGCAAAATCTTCATTTTATCACATAAGGGAAAAATCG
65 ACAAGGACAAAATCATCATTTTATCACATAAGGGAAAAACCG
*
22243428 TCATTTTATCATATGAGGGCAAAATTGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATC-
1 TCATTTTATCATAT-AGGGCAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATCA
**
22243492 ACAAGGACAAAATCATCATTTTATCACATAAGGGCGAAACCG
65 ACAAGGACAAAATCATCATTTTATCACATAAGGGAAAAACCG
* * *
22243534 TTATTTTATCACATAAGGGCAAAACCGTCATTTTATCACATGAGGGT
1 TCATTTTATCATAT-AGGGCAAAATCGTCATTTTATCACATGAGGGT
22243581 TCAGGTACGC
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
106 91 0.67
107 24 0.18
108 20 0.15
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (106 bp):
TCATTTTATCATATAGGGCAAAATCGTCATTTTATCACATGAGGGTAAAATCGTCATTTTATCAA
CAAGGACAAAATCATCATTTTATCACATAAGGGAAAAACCG
Found at i:22247021 original size:43 final size:43
Alignment explanation
Indices: 22246877--22247024 Score: 124
Period size: 43 Copynumber: 3.4 Consensus size: 43
22246867 GTGATTTCAT
* * * *
22246877 GTCTGGGATGTTGGCATCGAT-TTGAGATTTACGTGTAAGACCAT
1 GTCTGGGACGTTGGCATTGATATT-TGA-TTACGTGTAAGACCAC
* * * ** *
22246921 GTCTGGGACATGGGCA-TCATATTTGATTTTGTGTAAAACC-C
1 GTCTGGGACGTTGGCATTGATATTTGATTACGTGTAAGACCAC
* *
22246962 TGTCTGGGA-TTGTGGCATTGATATTTGATTACATGTAAGACCAC
1 -GTCTGGGACGT-TGGCATTGATATTTGATTACGTGTAAGACCAC
22247006 GTCTGGGACGTTGGCATTG
1 GTCTGGGACGTTGGCATTG
22247025 TACGAGCTTT
Statistics
Matches: 80, Mismatches: 18, Indels: 13
0.72 0.16 0.12
Matches are distributed among these distances:
41 1 0.01
42 23 0.29
43 39 0.49
44 17 0.21
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.34
Consensus pattern (43 bp):
GTCTGGGACGTTGGCATTGATATTTGATTACGTGTAAGACCAC
Found at i:22255310 original size:8 final size:8
Alignment explanation
Indices: 22255293--22255322 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
22255283 GAGGAACAGC
22255293 AAAAGCTG
1 AAAAGCTG
*
22255301 AAAAGTTG
1 AAAAGCTG
22255309 AAAAGCTG
1 AAAAGCTG
22255317 AAAAGC
1 AAAAGC
22255323 CAAAAGCCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.53, C:0.10, G:0.23, T:0.13
Consensus pattern (8 bp):
AAAAGCTG
Found at i:22264045 original size:49 final size:49
Alignment explanation
Indices: 22263824--22264377 Score: 875
Period size: 47 Copynumber: 11.6 Consensus size: 49
22263814 CCCTTCGGGA
* * * * *
22263824 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22263871 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22263918 CTTATGAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22263965 CTTATCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22264012 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22264061 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22264108 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22264157 CTTATCACATATATATACACTTTCACATTCACCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22264206 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22264253 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22264302 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22264349 CTTATCACACATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
22264378 TATTCAAATA
Statistics
Matches: 477, Mismatches: 20, Indels: 18
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 272 0.57
49 204 0.43
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22264053 original size:96 final size:96
Alignment explanation
Indices: 22263824--22264377 Score: 872
Period size: 96 Copynumber: 5.8 Consensus size: 96
22263814 CCCTTCGGGA
* * * * * * *
22263824 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22263887 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
22263918 CTTATGAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
22263981 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
22264012 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22264077 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
22264108 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
22264173 ACACTTTCACATTCACCACATCGGCTATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
22264206 CTTATCACATATATAT--ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
* *
22264269 ACACTTTCACATTCATCACATTGGCCATTCGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
22264302 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACACATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT--CACATATAT
22264365 ACACTTTCACATT
64 ACACTTTCACATT
22264378 TATTCAAATA
Statistics
Matches: 432, Mismatches: 18, Indels: 18
0.92 0.04 0.04
Matches are distributed among these distances:
93 1 0.00
94 95 0.22
96 280 0.65
98 56 0.13
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22268425 original size:40 final size:40
Alignment explanation
Indices: 22268379--22268655 Score: 353
Period size: 40 Copynumber: 6.9 Consensus size: 40
22268369 CCGAATACAC
* * * *
22268379 ATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * ** *
22268419 AACACCAGCACAAATGCTCTTCGGGGTTTAGCACGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
* * * *
22268459 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCTGGATAC
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
22268499 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
22268539 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
*
22268579 ATCACTAGCACGAATGCTCTTC-GGATCTTAGTCCGGATAT
1 ATCACTAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT
* *
22268619 GGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 -ATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
22268656 CATCATTCGA
Statistics
Matches: 207, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
39 3 0.01
40 187 0.90
41 11 0.05
42 6 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
Found at i:22268590 original size:120 final size:120
Alignment explanation
Indices: 22268377--22268655 Score: 391
Period size: 120 Copynumber: 2.3 Consensus size: 120
22268367 GCCCGAATAC
* * * *
22268377 ACATCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
** *
22268442 GGGTTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCTGGAT
66 GGACTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
* * *
22268497 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCG
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
* *
22268562 GGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGATCTTAGTCCGGAT
66 GGACTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
** *
22268617 ATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 A-CATCAC-TAGCACGAATGCTCTTCGGGACTTAGCCCGGA
22268656 CATCATTCGA
Statistics
Matches: 142, Mismatches: 15, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
120 128 0.90
121 8 0.06
122 6 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACAAATGCTCTTCG
GGACTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGAT
Found at i:22269002 original size:29 final size:29
Alignment explanation
Indices: 22268963--22269041 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
22268953 CTTAATAATC
*
22268963 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
22268993 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
22269022 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22269042 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:22269084 original size:43 final size:43
Alignment explanation
Indices: 22269023--22269125 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
22269013 TGCATTTCAA
22269023 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
22269066 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
22269109 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
22269126 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:22270624 original size:47 final size:47
Alignment explanation
Indices: 22270546--22270858 Score: 473
Period size: 47 Copynumber: 6.6 Consensus size: 47
22270536 CCCTTCGGGA
* ** * * * *
22270546 CTTATCACATTTATACACTTTCACACCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22270593 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22270640 CTTATCACATATATACACTTTCACAATCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22270687 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22270734 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22270783 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22270830 CTTATCACATATATATACACTTTCACATT
1 CTTATCAC--ATATATACACTTTCACATT
22270859 TATTCAAATA
Statistics
Matches: 244, Mismatches: 18, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
47 180 0.74
49 64 0.26
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22270780 original size:96 final size:96
Alignment explanation
Indices: 22270546--22270858 Score: 490
Period size: 96 Copynumber: 3.3 Consensus size: 96
22270536 CCCTTCGGGA
** * * * * * *
22270546 CTTATCACAT-T-TATACACTTTCACACCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
22270609 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
22270640 CTTATCAC--ATATATACACTTTCACAATCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
22270703 ACTTTCACATTCATCACATCGACCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
22270734 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
22270799 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
22270830 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
22270859 TATTCAAATA
Statistics
Matches: 202, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
93 1 0.00
94 90 0.45
96 111 0.55
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.33
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22274771 original size:17 final size:17
Alignment explanation
Indices: 22274731--22274773 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
22274721 CAGAATTATG
*
22274731 GGCCCATATGCCCATGT
1 GGCCCACATGCCCATGT
**
22274748 GGCCCCACATGCCTGTGT
1 GG-CCCACATGCCCATGT
22274766 GGCCCACA
1 GGCCCACA
22274774 CGCTCAGATT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.16, C:0.40, G:0.26, T:0.19
Consensus pattern (17 bp):
GGCCCACATGCCCATGT
Found at i:22289957 original size:32 final size:32
Alignment explanation
Indices: 22289921--22290009 Score: 79
Period size: 32 Copynumber: 2.8 Consensus size: 32
22289911 ATGCGGCTCT
* *
22289921 AAGCCTTCAGTAGCGGTATTATAATTGGCACA
1 AAGCCATCAGTAACGGTATTATAATTGGCACA
* * **
22289953 AAGCCATCGGTAACTGTATTATGTTTGGCACA
1 AAGCCATCAGTAACGGTATTATAATTGGCACA
* * ** *
22289985 TAGCCATTAGCGACGGTAATATAAT
1 AAGCCATCAGTAACGGTATTATAAT
22290010 CGATACACAG
Statistics
Matches: 42, Mismatches: 15, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTATTATAATTGGCACA
Found at i:22290260 original size:50 final size:50
Alignment explanation
Indices: 22290183--22290356 Score: 258
Period size: 50 Copynumber: 3.5 Consensus size: 50
22290173 GTCCATCGGC
* * *
22290183 CCACAGTCGTCTCGTGCGACCCATGTGACCTTAACAGATAAATACTAGAT
1 CCACAGTCGTCTCGTACGACCCGTGTGACCTTAACAGATAAATACTGGAT
* *
22290233 CCACAGCCGTCTCATACGACCCGTGTGACCTTAACAGATAAATACTGGAT
1 CCACAGTCGTCTCGTACGACCCGTGTGACCTTAACAGATAAATACTGGAT
* *
22290283 CCACAGTCGTCTTGTACGACCCGTGTGACCTTAATAGATAAATACTGGAT
1 CCACAGTCGTCTCGTACGACCCGTGTGACCTTAACAGATAAATACTGGAT
* * *
22290333 CCACAATCGTCTCGTGCGGCCCGT
1 CCACAGTCGTCTCGTACGACCCGT
22290357 ACAATCCTAT
Statistics
Matches: 111, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 111 1.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (50 bp):
CCACAGTCGTCTCGTACGACCCGTGTGACCTTAACAGATAAATACTGGAT
Found at i:22290633 original size:26 final size:27
Alignment explanation
Indices: 22290604--22290664 Score: 106
Period size: 26 Copynumber: 2.3 Consensus size: 27
22290594 CAAAACAGTC
*
22290604 ATTTTACCCTACAAGGGTA-TTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
22290630 ATTTTACACTACAAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
22290657 ATTTTACA
1 ATTTTACA
22290665 AATTGGGAGT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 18 0.55
27 15 0.45
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:22290676 original size:27 final size:27
Alignment explanation
Indices: 22290643--22290801 Score: 157
Period size: 27 Copynumber: 5.9 Consensus size: 27
22290633 TTACACTACA
22290643 AGGGTATTTC-GATAATTTTACAAATTG
1 AGGGTATTTCAG-TAATTTTACAAATTG
* * *
22290670 -GGAGTATTTTAGTAATTTTACAAGTAG
1 AGG-GTATTTCAGTAATTTTACAAATTG
* *
22290697 -GGGTATTTCAGTAATTTCAAAAATTG
1 AGGGTATTTCAGTAATTTTACAAATTG
* *
22290723 AGGGTATTTCAATAATTTCACAAA-TG
1 AGGGTATTTCAGTAATTTTACAAATTG
* * *
22290749 AGGGGTATTTC-GATAATTTTGCAACTCG
1 A-GGGTATTTCAG-TAATTTTACAAATTG
22290777 AGGGTATTTCAGTAATTTTACAAAT
1 AGGGTATTTCAGTAATTTTACAAAT
22290802 CAGGGGTCTT
Statistics
Matches: 108, Mismatches: 17, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
26 24 0.22
27 80 0.74
28 4 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATTG
Found at i:22290780 original size:54 final size:53
Alignment explanation
Indices: 22290644--22290808 Score: 199
Period size: 54 Copynumber: 3.1 Consensus size: 53
22290634 TACACTACAA
* *
22290644 GGGTATTTCGATAATTTTACAAATTG-GGAGTATTTTAGTAATTTTACAAGTAG
1 GGGTATTTCGATAATTTTACAAATTGAGG-GTATTTCAGTAATTTTACAAATAG
* * * *
22290697 GGGTATTTC-AGTAATTTCAAAAATTGAGGGTATTTCAATAATTTCACAAATGAG
1 GGGTATTTCGA-TAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAAT-AG
* * *
22290751 GGGTATTTCGATAATTTTGCAACTCGAGGGTATTTCAGTAATTTTACAAATCAG
1 GGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAAT-AG
22290805 GGGT
1 GGGT
22290809 CTTCAACTGA
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
52 1 0.01
53 40 0.43
54 52 0.55
55 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (53 bp):
GGGTATTTCGATAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAAATAG
Found at i:22299776 original size:79 final size:81
Alignment explanation
Indices: 22299641--22299821 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 81
22299631 ATGATGTCCG
* *
22299641 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTTGTG
*
22299705 CGAGATACTAATTA-CA
66 CGAGATACT-ATAACCA
* * * **
22299721 GGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCAAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCAAAGGCATTTGT
* *
22299783 GCGAGTTACTATAACCG
65 GCGAGATACTATAACCA
*
22299800 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
22299822 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 4 0.05
79 54 0.63
80 28 0.33
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
GGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCAAAGGCATTTGTG
CGAGATACTATAACCA
Found at i:22299828 original size:40 final size:40
Alignment explanation
Indices: 22299637--22299821 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
22299627 TTGAATGATG
* * * *
22299637 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22299677 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22299717 TACAGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22299756 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22299797 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22299822 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 33 0.27
40 78 0.64
41 10 0.08
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22299843 original size:79 final size:79
Alignment explanation
Indices: 22299693--22299844 Score: 193
Period size: 79 Copynumber: 1.9 Consensus size: 79
22299683 CTAAGATCCG
* **
22299693 AAGGCATTTGTGCGAGATACTAATTACAGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGATACTAATAACAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
22299758 CGGGTTAAGTCCCA
66 CGGGTTAAGTCCCA
* * * *
22299772 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTAT
1 AAGGCATTTGTGCGAGATACTAATAA-CAGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTAA
22299835 ATCC-GGTTAA
63 ATCCGGGTTAA
22299845 ATTCTGAAGG
Statistics
Matches: 63, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.05
79 35 0.56
80 25 0.40
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATACTAATAACAGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAAATC
CGGGTTAAGTCCCA
Found at i:22307827 original size:39 final size:40
Alignment explanation
Indices: 22307723--22307907 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
22307713 TTGAATGATG
* * *
22307723 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
22307762 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22307803 TCCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22307842 TCGGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22307881 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
22307908 AACAAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22307929 original size:79 final size:79
Alignment explanation
Indices: 22307724--22307930 Score: 210
Period size: 79 Copynumber: 2.6 Consensus size: 79
22307714 TGAATGATGT
* *
22307724 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGT-GACCATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTAG-CTATATCCGG-TTAAGATCCGAAGGCATT
*
22307787 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
* * * *
22307804 CCGGGCTAAG-CCCAAAGGCATTTGTGCGAGTTA-CTAAATCGGGGTTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATC-CGGTTAAGAT-CCGAAGGCATT
*
22307866 TGTGCGAGTTACT-ATAA
63 TGTGCGAGATACTAAT-A
* **
22307883 CCGGGCTATGTCCCGAAGGCATTTGAACAAGTAGCTATATCCGGTTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTTAA
22307931 ATTACGAAGG
Statistics
Matches: 104, Mismatches: 15, Indels: 17
0.76 0.11 0.12
Matches are distributed among these distances:
78 3 0.03
79 59 0.57
80 42 0.40
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATCCGGTTAAGATCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:22310445 original size:56 final size:56
Alignment explanation
Indices: 22310380--22310505 Score: 180
Period size: 56 Copynumber: 2.2 Consensus size: 56
22310370 TCCTAGACAG
* * *
22310380 GGTCTTACTCGTAAACACATATCGGAATCACCTATCGATACCAACGCATTAAACGT
1 GGTCTTACTCATAAACACATATCAGAATCACATATCGATACCAACGCATTAAACGT
* * **
22310436 GGTCTTACTCATACACACATATCAGAATCACATATCGATGCCAACTTATTAAACGT
1 GGTCTTACTCATAAACACATATCAGAATCACATATCGATACCAACGCATTAAACGT
*
22310492 GGTTTTACTCATAA
1 GGTCTTACTCATAA
22310506 TAACATGTCG
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 61 1.00
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCATAAACACATATCAGAATCACATATCGATACCAACGCATTAAACGT
Found at i:22310535 original size:43 final size:43
Alignment explanation
Indices: 22310461--22310730 Score: 310
Period size: 43 Copynumber: 6.3 Consensus size: 43
22310451 CACATATCAG
* *** * * *
22310461 AATCACATATCGATGCCAACTTATTAAACGTGGTTTTACTCAT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACAT
* * * *
22310504 AATAACATGTCGATGCCAACGTCCCAGACGTGCTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACAT
* * * *
22310547 AATCAAATATCGATGTCAACGTCCTAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACAT
*
22310590 ACTCACATA-CTGATGCCAACGTCCCAGACGTGGTCTTACACAT
1 AATCACATATC-GATGCCAACGTCCCAGACGTGGTCTTACACAT
* * *
22310633 AATCACATATC-ATGCCAACGTCCCAAATGTGGTCTTACACGT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACAT
* * * *
22310675 CATCACATATCGATGCCAACATCCCAAATGTGGTCTTACACAT
1 AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACAT
22310718 AATCACATATCGA
1 AATCACATATCGA
22310731 AAATCCTATG
Statistics
Matches: 194, Mismatches: 30, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
42 39 0.20
43 154 0.79
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (43 bp):
AATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACAT
Found at i:22310708 original size:128 final size:129
Alignment explanation
Indices: 22310488--22310726 Score: 327
Period size: 128 Copynumber: 1.9 Consensus size: 129
22310478 AACTTATTAA
* * * *
22310488 ACGTGGTTTTACTCATAATAACATGTCGATGCCAACGTCCCAGACGTGCTCTTACACGTAATCAA
1 ACGTGGTCTTACACATAATAACATATCGATGCCAACGTCCCAAACGTGCTCTTACACGTAATCAA
* * * * * *
22310553 ATATCGATGTCAACGTCCTAGACGTGGTCTTACACGTACTCACATACTGATGCCAACGTCCCAG
66 ATATCGATGCCAACATCCCAAACGTGGTCTTACACATAATCACATACTGATGCCAACGTCCCAG
* * * * *
22310617 ACGTGGTCTTACACATAATCACATATC-ATGCCAACGTCCCAAATGTGGTCTTACACGTCATCAC
1 ACGTGGTCTTACACATAATAACATATCGATGCCAACGTCCCAAACGTGCTCTTACACGTAATCAA
*
22310681 ATATCGATGCCAACATCCCAAATGTGGTCTTACACATAATCACATA
66 ATATCGATGCCAACATCCCAAACGTGGTCTTACACATAATCACATA
22310727 TCGAAAATCC
Statistics
Matches: 94, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
128 71 0.76
129 23 0.24
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (129 bp):
ACGTGGTCTTACACATAATAACATATCGATGCCAACGTCCCAAACGTGCTCTTACACGTAATCAA
ATATCGATGCCAACATCCCAAACGTGGTCTTACACATAATCACATACTGATGCCAACGTCCCAG
Found at i:22319529 original size:13 final size:14
Alignment explanation
Indices: 22319492--22319531 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
22319482 TTTAAATTTA
22319492 TAAATAATATATATT
1 TAAATAATAT-TATT
22319507 TGAAATAATATTATT
1 T-AAATAATATTATT
22319522 TAAA-AATATT
1 TAAATAATATT
22319532 CAAATATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 6 0.25
14 3 0.12
15 6 0.25
16 9 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
TAAATAATATTATT
Found at i:22331761 original size:46 final size:45
Alignment explanation
Indices: 22331711--22331878 Score: 173
Period size: 46 Copynumber: 3.6 Consensus size: 45
22331701 TGATTGAGCA
*
22331711 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCAT-GATGCGAATG
* * *
22331757 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGATGCGAA-T--G
* *
22331802 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCAT-GATGCGAATG
*
22331850 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTC
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTC
22331879 GCTTATGGGC
Statistics
Matches: 103, Mismatches: 9, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 53 0.51
47 29 0.28
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGATGCGAATG
Found at i:22331867 original size:93 final size:93
Alignment explanation
Indices: 22331708--22331879 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
22331698 GGATGATTGA
* * *
22331708 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTCATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATAGATGCGAACGTCCGAACTCGTTGAGT
22331773 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
22331801 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATAGATGCGAACGTCC-GAACTCGTTGAG
22331865 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
22331880 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATAGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22336902 original size:40 final size:40
Alignment explanation
Indices: 22336858--22337121 Score: 361
Period size: 40 Copynumber: 6.6 Consensus size: 40
22336848 TCCTCGTTCA
* * *
22336858 AATGCCTTCGGGACATAGCCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
22336898 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22336938 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22336978 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22337018 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
22337058 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
22337098 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22337122 CAGCATTCAA
Statistics
Matches: 205, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
39 3 0.01
40 194 0.95
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22342252 original size:46 final size:47
Alignment explanation
Indices: 22342202--22342375 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 47
22342192 GTTGAGCATC
22342202 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-TT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTT
* * * *
22342248 CGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATC
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--GC-TT
*
22342295 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTT
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG-CTT
* *
22342343 --AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22342376 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 58 0.54
47 28 0.26
48 4 0.04
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (47 bp):
CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCTT
Found at i:22342356 original size:93 final size:92
Alignment explanation
Indices: 22342197--22342368 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 92
22342187 GGATGGTTGA
*
22342197 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTC-AACTCGTTGAGT
22342262 TGAGTCCGAGTTCGTGAGATGTAACTAG
65 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22342290 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTT-AGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG--TTCAACTCGTTGAG
22342354 TTGAGTCCGAGTTCG
64 TTGAGTCCGAGTTCG
22342369 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
93 73 0.97
95 2 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTCAACTCGTTGAGTT
GAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22352882 original size:24 final size:24
Alignment explanation
Indices: 22352855--22352925 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
22352845 CTAGATTTCC
**
22352855 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
22352879 TCCCTTATCAACTCCTTAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
22352903 TCCCTTATCAACTCCTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
22352926 CTCCTGACAG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 43 1.00
ACGTcount: A:0.24, C:0.38, G:0.01, T:0.37
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:22356043 original size:43 final size:43
Alignment explanation
Indices: 22355982--22356194 Score: 216
Period size: 43 Copynumber: 5.0 Consensus size: 43
22355972 GTACAGGTTA
* * *
22355982 TACTTTGGTATATTCGATGATGCATTGTGTGTGCCAGTATAGT
1 TACTTCGGGATATTCGATGATGCACTGTGTGTGCCAGTATAGT
* * *
22356025 TACTTCAGAATATTCGATGATGCATTGTGTGTGCCAGTATAGT
1 TACTTCGGGATATTCGATGATGCACTGTGTGTGCCAGTATAGT
* * * *
22356068 TACTTTGGGATA-TCTGATGATGCACTATTTGTGCCAGTATAAT
1 TACTTCGGGATATTC-GATGATGCACTGTGTGTGCCAGTATAGT
** * * *
22356111 TGTTTCGGGATATTTGATGATGCACTGTGTGTACCTGTATAGT
1 TACTTCGGGATATTCGATGATGCACTGTGTGTGCCAGTATAGT
* * *
22356154 TGCTT--TGATATATCTAATGATGCACTGTGTGTGCCAGTATA
1 TACTTCGGGATAT-TC-GATGATGCACTGTGTGTGCCAGTATA
22356195 TGTGATTCGG
Statistics
Matches: 141, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
41 5 0.04
42 3 0.02
43 132 0.94
44 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (43 bp):
TACTTCGGGATATTCGATGATGCACTGTGTGTGCCAGTATAGT
Found at i:22356130 original size:86 final size:86
Alignment explanation
Indices: 22355982--22356194 Score: 266
Period size: 86 Copynumber: 2.5 Consensus size: 86
22355972 GTACAGGTTA
* *
22355982 TACTTTGGTATAT-TCGATGATGCATTGTGTGTGCCAGTATAGTTACTTCAGAATATTCGATGAT
1 TACTTTGGTATATCT-GATGATGCACTGTGTGTGCCAGTATAATTACTTCAGAATATTCGATGAT
* *
22356046 GCATTGTGTGTGCCAGTATAGT
65 GCACTGTGTGTACCAGTATAGT
* * * ** * * *
22356068 TACTTTGGGATATCTGATGATGCACTATTTGTGCCAGTATAATTGTTTCGGGATATTTGATGATG
1 TACTTTGGTATATCTGATGATGCACTGTGTGTGCCAGTATAATTACTTCAGAATATTCGATGATG
*
22356133 CACTGTGTGTACCTGTATAGT
66 CACTGTGTGTACCAGTATAGT
* * *
22356154 TGCTTTGATATATCTAATGATGCACTGTGTGTGCCAGTATA
1 TACTTTGGTATATCTGATGATGCACTGTGTGTGCCAGTATA
22356195 TGTGATTCGG
Statistics
Matches: 107, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
86 106 0.99
87 1 0.01
ACGTcount: A:0.23, C:0.13, G:0.24, T:0.40
Consensus pattern (86 bp):
TACTTTGGTATATCTGATGATGCACTGTGTGTGCCAGTATAATTACTTCAGAATATTCGATGATG
CACTGTGTGTACCAGTATAGT
Found at i:22356204 original size:86 final size:86
Alignment explanation
Indices: 22355998--22356223 Score: 249
Period size: 86 Copynumber: 2.6 Consensus size: 86
22355988 GGTATATTCG
* * * * *
22355998 ATGATGCATTGTGTGTGCCAGTATA-GTTACTTCAGAATATTCGATGATGCATTGTGTGTGCCAG
1 ATGATGCACTGTGTGTGCCAGTATATGTGA-TTCGGAATATTCGATGATGCACTGTGTGTACCAG
* *
22356062 TATAGTTACTTTGGGATATCTG
65 TATAGTTACTTTGAGATATCTA
* * * * * *
22356084 ATGATGCACTATTTGTGCCAGTATAAT-TGTTTCGGGATATTTGATGATGCACTGTGTGTACCTG
1 ATGATGCACTGTGTGTGCCAGTAT-ATGTGATTCGGAATATTCGATGATGCACTGTGTGTACCAG
* *
22356148 TATAGTTGCTTTGATATATCTA
65 TATAGTTACTTTGAGATATCTA
** *
22356170 ATGATGCACTGTGTGTGCCAGTATATGTGATTCGGTTTCATCCGATGATGCACT
1 ATGATGCACTGTGTGTGCCAGTATATGTGATTCGGAAT-ATTCGATGATGCACT
22356224 TACGTGCCAG
Statistics
Matches: 114, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
85 2 0.02
86 97 0.85
87 15 0.13
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.39
Consensus pattern (86 bp):
ATGATGCACTGTGTGTGCCAGTATATGTGATTCGGAATATTCGATGATGCACTGTGTGTACCAGT
ATAGTTACTTTGAGATATCTA
Found at i:22356231 original size:129 final size:129
Alignment explanation
Indices: 22355991--22356235 Score: 291
Period size: 129 Copynumber: 1.9 Consensus size: 129
22355981 ATACTTTGGT
* * * *
22355991 ATATTCGATGATGCATTGTGTGTGCCAGTATAGTTACTTCAGAATATTCGATGATGCATTGTGTG
1 ATATTCGATGATGCACTGTGTGTACCAGTATAGTTACTTCAGAATATTCAATGATGCACTGTGTG
* * * **
22356056 TGCCAGTATAGTTACTTTGGGATATCTGATGATGCACTATTTGTGCCAGTATAATTGTTTCGGG
66 TGCCAGTATAGTGACTTCGGGATATCCGATGATGCACTATACGTGCCAGTATAATTGTTTCGGG
* * * *
22356120 ATATTTGATGATGCACTGTGTGTACCTGTATAGTTGCTT-TG-ATATATCTAATGATGCACTGTG
1 ATATTCGATGATGCACTGTGTGTACCAGTATAGTTACTTCAGAATAT-TC-AATGATGCACTGTG
**
22356183 TGTGCCAGTATATGTGA-TTCGGTTTCATCCGATGATGCACT-TACGTGCCAGTA
64 TGTGCCAGTATA-GTGACTTCGGGAT-ATCCGATGATGCACTATACGTGCCAGTA
22356236 CATGTGTGTC
Statistics
Matches: 97, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
127 4 0.04
128 3 0.03
129 73 0.75
130 17 0.18
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.38
Consensus pattern (129 bp):
ATATTCGATGATGCACTGTGTGTACCAGTATAGTTACTTCAGAATATTCAATGATGCACTGTGTG
TGCCAGTATAGTGACTTCGGGATATCCGATGATGCACTATACGTGCCAGTATAATTGTTTCGGG
Found at i:22358662 original size:34 final size:34
Alignment explanation
Indices: 22358601--22358691 Score: 132
Period size: 34 Copynumber: 2.7 Consensus size: 34
22358591 ACACTCGTAG
* *
22358601 TGCCATAACCCAG-TTTTGGTCTTATCATTAGGA
1 TGCCATAGCCCAGCTTATGGTCTTATCATTAGGA
*
22358634 TGCCATAGCCCAGCTTATAGTCTTATCATTAGGA
1 TGCCATAGCCCAGCTTATGGTCTTATCATTAGGA
*
22358668 TGTCATAGCCCAGC-TATGGTCTTA
1 TGCCATAGCCCAGCTTATGGTCTTA
22358692 CAAGTATATT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
33 21 0.40
34 31 0.60
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (34 bp):
TGCCATAGCCCAGCTTATGGTCTTATCATTAGGA
Found at i:22358756 original size:33 final size:33
Alignment explanation
Indices: 22358719--22358794 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
22358709 TGGTCCAACC
* *
22358719 ATGGTCTTACGTTCAC-AGTGCCATAACCCAGTT
1 ATGGTCTTAC-TTCACAAATGCCATAACCCAGCT
22358752 ATGGTCTT--TTCACTAAAATGCCATAACCCAGCT
1 ATGGTCTTACTTCAC--AAATGCCATAACCCAGCT
22358785 ATGGTCTTAC
1 ATGGTCTTAC
22358795 ATTTAAACAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
30 5 0.14
33 31 0.86
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (33 bp):
ATGGTCTTACTTCACAAATGCCATAACCCAGCT
Found at i:22362830 original size:40 final size:40
Alignment explanation
Indices: 22362730--22362992 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
22362720 TCCTCGTTCA
* * * * *
22362730 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
22362769 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
22362809 AATGCCTTCGGGACTTGACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22362849 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22362889 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
22362929 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
22362969 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22362993 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22370260 original size:40 final size:40
Alignment explanation
Indices: 22370160--22370422 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
22370150 TCCTCGTTCA
* * * * *
22370160 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
22370199 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
22370239 AATGCCTTCGGGACTTGACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22370279 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22370319 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
22370359 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
22370399 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22370423 CAGCATTCAA
Statistics
Matches: 198, Mismatches: 22, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 37 0.19
40 153 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22373183 original size:17 final size:17
Alignment explanation
Indices: 22373163--22373198 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
22373153 TTTATCATTT
22373163 TTACGTTTTTCCAATTG
1 TTACGTTTTTCCAATTG
*
22373180 TTACGTTTTTCTAATTG
1 TTACGTTTTTCCAATTG
22373197 TT
1 TT
22373199 GTTTAGTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.14, G:0.11, T:0.58
Consensus pattern (17 bp):
TTACGTTTTTCCAATTG
Found at i:22383000 original size:46 final size:47
Alignment explanation
Indices: 22382761--22383076 Score: 231
Period size: 46 Copynumber: 6.8 Consensus size: 47
22382751 TTTGTGTGTG
*** *
22382761 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGA-GATGTA
*** * ** *
22382806 GAGCCAACATAAGACCATGTCTGGGACATCGCATCAACATTGAGACG-A
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTGAGATGTA
* * * * * * * **
22382854 GTGCTAGTGTAAGA-CATGTCTAGAATAT-GCATCAGCCTCGAGACATA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATC-GGCTTGAGATGTA
* * *
22382901 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCGTCAGCTTCGAGACGTA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTT-GAGATGTA
*
22382947 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTATGAAATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-TGAGATGTA
* * *
22382992 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATGTG
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATGTA
*
22383040 AGCCAGTGTAAGACCGTGTCTGGGACATGGCATCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
22383077 ACCTTACCCA
Statistics
Matches: 216, Mismatches: 43, Indels: 21
0.77 0.15 0.08
Matches are distributed among these distances:
45 3 0.01
46 104 0.48
47 82 0.38
48 26 0.12
49 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGAGATGTA
Found at i:22384136 original size:17 final size:17
Alignment explanation
Indices: 22384114--22384147 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
22384104 GTGAATTACA
22384114 AATTAATTCTACATGGG
1 AATTAATTCTACATGGG
22384131 AATTAATTCTACATGGG
1 AATTAATTCTACATGGG
22384148 TGTGGGACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (17 bp):
AATTAATTCTACATGGG
Found at i:22394277 original size:59 final size:59
Alignment explanation
Indices: 22394185--22394303 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
22394175 GCCTTAATAA
22394185 AAGTTTTATGGCATCAACATGGTGTAGAAGAGGCTACATGGGAACCAAACGAAACCATG
1 AAGTTTTATGGCATCAACATGGTGTAGAAGAGGCTACATGGGAACCAAACGAAACCATG
22394244 AAGTTTTATGGCATCAACATGGTGTAGAAGAGGCTACATGGGAACCAAACGAAACCATG
1 AAGTTTTATGGCATCAACATGGTGTAGAAGAGGCTACATGGGAACCAAACGAAACCATG
22394303 A
1 A
22394304 GAAGCCAATA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.38, C:0.17, G:0.25, T:0.20
Consensus pattern (59 bp):
AAGTTTTATGGCATCAACATGGTGTAGAAGAGGCTACATGGGAACCAAACGAAACCATG
Found at i:22400029 original size:112 final size:113
Alignment explanation
Indices: 22399827--22400057 Score: 403
Period size: 112 Copynumber: 2.1 Consensus size: 113
22399817 CCCATACCTG
* *
22399827 TATCCTACAGCGTGACGGAATATAAGGCGTTACCTCACTTAAACTCGTGCTTACAACCATTTTCG
1 TATCCTACACCGTGACGGAATACAAGGCGTTACCTCACTTAAACTCGTGCTTACAACCATTTTCG
22399892 AGTCCCCATGACTTGGACAAATTTAAAACTTTCTCAAACATACCAACA
66 AGTCCCCATGACTTGGACAAATTTAAAACTTTCTCAAACATACCAACA
* *
22399940 TATCCTACACCGTGACGG-ATACGAGGCGTTACTTCACTTAAACTCGTGCTTACAACCATTTTCG
1 TATCCTACACCGTGACGGAATACAAGGCGTTACCTCACTTAAACTCGTGCTTACAACCATTTTCG
22400004 AGTCCCCATGACTTGGA-AAATTTTAAAACTTTCTCAAACATACCAACA
66 AGTCCCCATGACTTGGACAAA-TTTAAAACTTTCTCAAACATACCAACA
22400052 TATCCT
1 TATCCT
22400058 TAATATAGGC
Statistics
Matches: 113, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
111 3 0.03
112 93 0.82
113 17 0.15
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.29
Consensus pattern (113 bp):
TATCCTACACCGTGACGGAATACAAGGCGTTACCTCACTTAAACTCGTGCTTACAACCATTTTCG
AGTCCCCATGACTTGGACAAATTTAAAACTTTCTCAAACATACCAACA
Found at i:22400178 original size:21 final size:21
Alignment explanation
Indices: 22400152--22400191 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
22400142 CACTTGACAT
22400152 AGGGGCACACGCCCGTGTGAA
1 AGGGGCACACGCCCGTGTGAA
22400173 AGGGGCACACGCCCGTGTG
1 AGGGGCACACGCCCGTGTG
22400192 GCCAATTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.30, G:0.40, T:0.10
Consensus pattern (21 bp):
AGGGGCACACGCCCGTGTGAA
Found at i:22402165 original size:13 final size:13
Alignment explanation
Indices: 22402147--22402224 Score: 105
Period size: 13 Copynumber: 6.5 Consensus size: 13
22402137 AGATTTTTCT
22402147 TAAATATTATCAC
1 TAAATATTATCAC
22402160 TAAATA--ATC-C
1 TAAATATTATCAC
22402170 TAAATATTATCAC
1 TAAATATTATCAC
22402183 TAAATATTATCAC
1 TAAATATTATCAC
*
22402196 TAAATA--AT-TC
1 TAAATATTATCAC
22402206 TAAATATTATCAC
1 TAAATATTATCAC
22402219 TAAATA
1 TAAATA
22402225 ATTCAAATTT
Statistics
Matches: 57, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
10 14 0.25
11 5 0.09
12 5 0.09
13 33 0.58
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (13 bp):
TAAATATTATCAC
Found at i:22402194 original size:36 final size:36
Alignment explanation
Indices: 22402147--22402224 Score: 147
Period size: 36 Copynumber: 2.2 Consensus size: 36
22402137 AGATTTTTCT
22402147 TAAATATTATCACTAAATAATCCTAAATATTATCAC
1 TAAATATTATCACTAAATAATCCTAAATATTATCAC
*
22402183 TAAATATTATCACTAAATAATTCTAAATATTATCAC
1 TAAATATTATCACTAAATAATCCTAAATATTATCAC
22402219 TAAATA
1 TAAATA
22402225 ATTCAAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 41 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (36 bp):
TAAATATTATCACTAAATAATCCTAAATATTATCAC
Found at i:22402208 original size:23 final size:23
Alignment explanation
Indices: 22402182--22402232 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
22402172 AATATTATCA
22402182 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
22402205 CTAAATATTATCACTAAATAATT
1 CTAAATATTATCACTAAATAATT
22402228 C-AAAT
1 CTAAAT
22402233 TTAAACTAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 4 0.14
23 24 0.86
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (23 bp):
CTAAATATTATCACTAAATAATT
Found at i:22402749 original size:7 final size:7
Alignment explanation
Indices: 22402737--22402775 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
22402727 GATTAATGTT
22402737 AAAATTA
1 AAAATTA
22402744 AAAATTA
1 AAAATTA
22402751 AAAATT-
1 AAAATTA
22402757 AAAA-TA
1 AAAATTA
22402763 AAATATTA
1 AAA-ATTA
22402771 AAAAT
1 AAAAT
22402776 AATTTATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 1 0.03
6 7 0.24
7 16 0.55
8 5 0.17
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (7 bp):
AAAATTA
Found at i:22402760 original size:20 final size:20
Alignment explanation
Indices: 22402735--22402775 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
22402725 AAGATTAATG
22402735 TTAAAATTAAAA-ATTAAAAA
1 TTAAAA-TAAAATATTAAAAA
22402755 TTAAAATAAAATATTAAAAA
1 TTAAAATAAAATATTAAAAA
22402775 T
1 T
22402776 AATTTATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
TTAAAATAAAATATTAAAAA
Found at i:22404462 original size:17 final size:17
Alignment explanation
Indices: 22404440--22404482 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
22404430 CTTCATGTTT
*
22404440 TTTTTTAATTTTATGAA
1 TTTTTTAATTTTATAAA
* *
22404457 TTTTTTTATTTTTTAAA
1 TTTTTTAATTTTATAAA
22404474 TATTTTTAA
1 T-TTTTTAA
22404483 AGTAAACCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
TTTTTTAATTTTATAAA
Found at i:22406226 original size:18 final size:17
Alignment explanation
Indices: 22406190--22406228 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
22406180 TAATGCATGA
22406190 TATTTAAAATTGTTTAT
1 TATTTAAAATTGTTTAT
* *
22406207 TATTTAGAATTTTATTAT
1 TATTTAAAATTGT-TTAT
22406225 TATT
1 TATT
22406229 AATGAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (17 bp):
TATTTAAAATTGTTTAT
Found at i:22409686 original size:28 final size:27
Alignment explanation
Indices: 22409650--22409705 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 27
22409640 GTTAATAATG
22409650 AAGGTTAAATAAGTAATTTAGTAGAATA
1 AAGGTTAAATAAGTAATTTAGTA-AATA
22409678 AAGGTTAAATAAGTAATTTAGTAAATA
1 AAGGTTAAATAAGTAATTTAGTAAATA
22409705 A
1 A
22409706 GTATAGTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 5 0.18
28 23 0.82
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (27 bp):
AAGGTTAAATAAGTAATTTAGTAAATA
Found at i:22411695 original size:29 final size:29
Alignment explanation
Indices: 22411662--22411731 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
22411652 ATAAAGGGAT
*
22411662 TAAATTTTTAAAAATATAACTACAATGAC
1 TAAATTTTTAAAAATATAACTACAATAAC
* *
22411691 TAAATTCTTT-AAAATATAATTACATTAAC
1 TAAATT-TTTAAAAATATAACTACAATAAC
22411720 TAAATTTTTAAA
1 TAAATTTTTAAA
22411732 TTTCAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 3 0.08
29 30 0.83
30 3 0.08
ACGTcount: A:0.50, C:0.09, G:0.01, T:0.40
Consensus pattern (29 bp):
TAAATTTTTAAAAATATAACTACAATAAC
Found at i:22412383 original size:18 final size:19
Alignment explanation
Indices: 22412357--22412400 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
22412347 TAATCATATG
22412357 TTTAGTTATTTTT-TTTAA
1 TTTAGTTATTTTTGTTTAA
* *
22412375 TTTATTTATTTTTGTTTTA
1 TTTAGTTATTTTTGTTTAA
22412394 TTTAGTT
1 TTTAGTT
22412401 TTTCACATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (19 bp):
TTTAGTTATTTTTGTTTAA
Found at i:22412393 original size:15 final size:15
Alignment explanation
Indices: 22412362--22412403 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
22412352 ATATGTTTAG
22412362 TTATTT-TTTTTAAT
1 TTATTTATTTTTAAT
**
22412376 TTATTTATTTTTGTT
1 TTATTTATTTTTAAT
22412391 TTATTTAGTTTTT
1 TTATTTA-TTTTT
22412404 CACATAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 6 0.25
15 13 0.54
16 5 0.21
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.79
Consensus pattern (15 bp):
TTATTTATTTTTAAT
Found at i:22412638 original size:31 final size:31
Alignment explanation
Indices: 22412578--22412638 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
22412568 TAGATATCAC
* **
22412578 ATTAGACATTTTATGAAGGTACATGTACCAT
1 ATTAGACATTTTATGAAAGTACAAATACCAT
*
22412609 ATTAGACATTTTATGAAAGTATAAATACCA
1 ATTAGACATTTTATGAAAGTACAAATACCA
22412639 AATATGGCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.34
Consensus pattern (31 bp):
ATTAGACATTTTATGAAAGTACAAATACCAT
Found at i:22418138 original size:8 final size:7
Alignment explanation
Indices: 22418104--22418148 Score: 63
Period size: 7 Copynumber: 6.1 Consensus size: 7
22418094 CCATGTTAGT
22418104 AAAAATA
1 AAAAATA
22418111 AAATAATTA
1 AAA-AA-TA
*
22418120 AAAAATC
1 AAAAATA
22418127 AAAAATA
1 AAAAATA
22418134 AAAAATA
1 AAAAATA
22418141 AAAAATA
1 AAAAATA
22418148 A
1 A
22418149 TTTGAAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 25 0.74
8 4 0.12
9 5 0.15
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (7 bp):
AAAAATA
Found at i:22418252 original size:23 final size:23
Alignment explanation
Indices: 22418202--22418252 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 23
22418192 TCCAAGTTCA
22418202 TTAAAAAATTAATTTTTTAAATT
1 TTAAAAAATTAATTTTTTAAATT
*
22418225 ATAAAAAA-T-ATTTTTATGAAATT
1 TTAAAAAATTAATTTTT-T-AAATT
22418248 TTAAA
1 TTAAA
22418253 TTTTTTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 6 0.25
22 2 0.08
23 16 0.67
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (23 bp):
TTAAAAAATTAATTTTTTAAATT
Found at i:22418507 original size:31 final size:30
Alignment explanation
Indices: 22418441--22418504 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 30
22418431 CTTCGGCCAC
* * *
22418441 TTTAGTCCTAATGTCATCAAATGTTTTCAT
1 TTTAGTCCTAATATCATCAAATATTCTCAT
*
22418471 TTTAGTCCCTAATATTATCAAATATTCTCGAT
1 TTTAGT-CCTAATATCATCAAATATTCTC-AT
22418503 TT
1 TT
22418505 AGTGCTTTGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 6 0.21
31 18 0.64
32 4 0.14
ACGTcount: A:0.28, C:0.17, G:0.08, T:0.47
Consensus pattern (30 bp):
TTTAGTCCTAATATCATCAAATATTCTCAT
Found at i:22418589 original size:11 final size:11
Alignment explanation
Indices: 22418573--22418597 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22418563 TGTCATACAA
22418573 TGATGTCATAG
1 TGATGTCATAG
22418584 TGATGTCATAG
1 TGATGTCATAG
22418595 TGA
1 TGA
22418598 CATCATTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.08, G:0.28, T:0.36
Consensus pattern (11 bp):
TGATGTCATAG
Found at i:22418660 original size:19 final size:18
Alignment explanation
Indices: 22418638--22418691 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
22418628 TAAAAATGAA
*
22418638 AAAAAGTACAAAAATATTT
1 AAAAAGTA-AAAAATAATT
*
22418657 AAAAATTAAAAAATAATT
1 AAAAAGTAAAAAATAATT
22418675 AAGGAAA-TAAAAAATAA
1 AA--AAAGTAAAAAATAA
22418692 AAAATTACAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 11 0.35
19 17 0.55
20 3 0.10
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (18 bp):
AAAAAGTAAAAAATAATT
Found at i:22418668 original size:18 final size:17
Alignment explanation
Indices: 22418647--22418714 Score: 63
Period size: 18 Copynumber: 3.9 Consensus size: 17
22418637 AAAAAAGTAC
22418647 AAAAATATTTAAAAATTA
1 AAAAATA-TTAAAAATTA
22418665 AAAAATAATTAAGGAAA-TA
1 AAAAAT-ATTAA--AAATTA
22418684 AAAAATA--AAAAATTA
1 AAAAATATTAAAAATTA
22418699 CAAAAA-ATTAAAAATT
1 -AAAAATATTAAAAATT
22418715 TACTAAAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 15
0.74 0.00 0.26
Matches are distributed among these distances:
14 3 0.07
15 3 0.07
16 7 0.16
17 7 0.16
18 11 0.26
19 9 0.21
20 3 0.07
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (17 bp):
AAAAATATTAAAAATTA
Found at i:22418712 original size:19 final size:19
Alignment explanation
Indices: 22418629--22418712 Score: 54
Period size: 19 Copynumber: 4.6 Consensus size: 19
22418619 AAAAATCTTT
* *
22418629 AAAAATGAAAAAAAGTACA
1 AAAAATTAAAAAAATTACA
* *
22418648 AAAATATT-TAAAAATTAAA
1 AAAA-ATTAAAAAAATTACA
**
22418667 AAATAATTAAGGAAA-T--A
1 AAA-AATTAAAAAAATTACA
22418684 AAAAA-T-AAAAAATTACA
1 AAAAATTAAAAAAATTACA
22418701 AAAAATTAAAAA
1 AAAAATTAAAAA
22418713 TTTACTAAAA
Statistics
Matches: 48, Mismatches: 9, Indels: 16
0.66 0.12 0.22
Matches are distributed among these distances:
14 4 0.08
15 2 0.04
16 2 0.04
17 10 0.21
18 1 0.02
19 23 0.48
20 6 0.12
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (19 bp):
AAAAATTAAAAAAATTACA
Found at i:22418717 original size:18 final size:18
Alignment explanation
Indices: 22418682--22418722 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
22418672 ATTAAGGAAA
22418682 TAAAAAATAAAAAATTAC
1 TAAAAAATAAAAAATTAC
*
22418700 -AAAAAATTAAAAATTTAC
1 TAAAAAA-TAAAAAATTAC
22418718 TAAAA
1 TAAAA
22418723 TTTTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
17 6 0.30
18 10 0.50
19 4 0.20
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
TAAAAAATAAAAAATTAC
Found at i:22420800 original size:50 final size:49
Alignment explanation
Indices: 22420688--22420874 Score: 189
Period size: 50 Copynumber: 3.8 Consensus size: 49
22420678 TGAGGTCGCA
* * * * *
22420688 TGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT-GATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CC--AGACTGTAGGTCACG
* **
22420739 TGTGTGGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-AGGTCACG
* * *
22420789 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
* * *
22420838 TGTGTAGTGCTAAGTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
22420875 TAGTTTCGGC
Statistics
Matches: 115, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 39 0.34
50 42 0.37
51 29 0.25
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTAGGTCACG
Found at i:22422489 original size:129 final size:130
Alignment explanation
Indices: 22422258--22422512 Score: 415
Period size: 129 Copynumber: 2.0 Consensus size: 130
22422248 ATTTAGAAAA
22422258 CATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACG
1 CATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACG
* * *
22422323 ATAGGGCACGATTCCCCGAATTCCCAAACATCGAACGTTGCCTTCGTTTTAAAGAGTTTTTGAAG
66 ATAGGACACGATTCCCCGAATTCCCAAACATCGAACGTTGCCTTCATTTTAAAGAATTTTTGAAG
*
22422388 CATGAGTGAAATT-TCAAAGGAATATTCGATTATTTTGAACAAAC-GGAAATTGCAACCCAGCAC
1 CATGAGTGAAATTCT-AAAGGAACATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCAC
* * **
22422451 GATTGGACATGATTCTTCGAATTCCCAAACATCGAACGTTGCCTTCATTTTAAAGAATTTTT
65 GATAGGACACGATTCCCCGAATTCCCAAACATCGAACGTTGCCTTCATTTTAAAGAATTTTT
22422513 AAATGAATAA
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
129 75 0.65
130 41 0.35
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (130 bp):
CATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACG
ATAGGACACGATTCCCCGAATTCCCAAACATCGAACGTTGCCTTCATTTTAAAGAATTTTTGAAG
Found at i:22425168 original size:14 final size:14
Alignment explanation
Indices: 22425151--22425180 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22425141 TAACTTCAGT
*
22425151 CTGCTCTACTGCAA
1 CTGCTCCACTGCAA
22425165 CTGCTCCACTGCAA
1 CTGCTCCACTGCAA
22425179 CT
1 CT
22425181 TTAGGGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.13, T:0.27
Consensus pattern (14 bp):
CTGCTCCACTGCAA
Found at i:22425271 original size:44 final size:44
Alignment explanation
Indices: 22425165--22425282 Score: 134
Period size: 44 Copynumber: 2.7 Consensus size: 44
22425155 TCTACTGCAA
* * *
22425165 CTGCTCCACTGCAACTTTAGGGAGATATGGTTCGTGTATTTTAT
1 CTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGTATTTGAT
* *
22425209 CTTGCTCTAC-GACAACTTCAGAGAGATAAGGATT-GTG-ATTTCGAT
1 C-TGCTCCACTG-CAACTTCAGGGAGATAAGG-TTCGTGTATTT-GAT
22425254 CTGCTCCACTGCAACTTCAGGGAGATAAG
1 CTGCTCCACTGCAACTTCAGGGAGATAAG
22425283 ATCTGCTAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
44 30 0.48
45 30 0.48
46 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (44 bp):
CTGCTCCACTGCAACTTCAGGGAGATAAGGTTCGTGTATTTGAT
Found at i:22425395 original size:88 final size:88
Alignment explanation
Indices: 22425272--22425640 Score: 418
Period size: 88 Copynumber: 4.2 Consensus size: 88
22425262 CTGCAACTTC
* * ** *
22425272 AGGGAGATAAGATCTGCTAATCTTTGGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCAATGT
1 AGGGAGACAAGATCTAC-AATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGT
*
22425337 CTTTGCTTTGCTCCACTACTGCTT
65 CTTTGATTTGCTCCACTACTGCTT
* * *
22425361 AAGGAGACAAGATCTACAATCTTCGGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTG
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTC
* * *
22425426 TTTGATCTGTTCCACT-GTAGCTT
66 TTTGATTTGCTCCACTACT-GCTT
* * * **
22425449 CAGGGAGACAAGATATATAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGACTTGCT-T
1 -AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGT
* *
22425513 CTTTGATTTGCTCTACTACTGTTT
65 CTTTGATTTGCTCCACTACTGCTT
* * * * ** *
22425537 AGGGAGACAAGATCTGCAATTTTTAGCCTGTTACCCTATTACTTAGGGGGTTAAGGCTTGCCGTC
1 AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTC
* * **
22425602 TTTGATCTGTTCCACTACAACTT
66 TTTGATTTGCTCCACTACTGCTT
22425625 CAGGGAGACAAGATCT
1 -AGGGAGACAAGATCT
22425641 GTGAATTCAC
Statistics
Matches: 238, Mismatches: 37, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
87 55 0.23
88 98 0.41
89 85 0.36
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.33
Consensus pattern (88 bp):
AGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCACTGTC
TTTGATTTGCTCCACTACTGCTT
Found at i:22425571 original size:176 final size:178
Alignment explanation
Indices: 22425242--22425638 Score: 528
Period size: 176 Copynumber: 2.2 Consensus size: 178
22425232 AGATAAGGAT
* * * * **
22425242 TGTGATTTCGATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTGCTAATCTTTGGCCTGTTAC
1 TGTG-TTT-GATCTGTTCCACTGCAACTTCAGGGAGACAAGATATGATAATCTTCAGCCTGTTAC
* *
22425307 CCTACTACTTAGGGGGTTAAGGCTCAATGTCTTTGCTTTGCTCCACTACTGCTTAAGGAGACAAG
64 CCTACTACTTAGGGGGTTAAGACTCAATGTCTTTGATTTGCTCCACTACTGCTTAAGGAGACAAG
*
22425372 ATCTACAATCTTCGGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCAC
129 ATCTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCAC
* *
22425422 TGTGTTTGATCTGTTCCACTGTAGCTTCAGGGAGACAAGATAT-ATAATCTTCAGCCTGTTACCC
1 TGTGTTTGATCTGTTCCACTGCAACTTCAGGGAGACAAGATATGATAATCTTCAGCCTGTTACCC
*** * * *
22425486 TACTACTTAGGGGGTTAAGACTTGCT-TCTTTGATTTGCTCTACTACTGTTTAGGGAGACAAGAT
66 TACTACTTAGGGGGTTAAGACTCAATGTCTTTGATTTGCTCCACTACTGCTTAAGGAGACAAGAT
* * * * **
22425550 CTGCAATTTTTAGCCTGTTACCCTATTACTTAGGGGGTTAAGGCTTGC
131 CTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCAC
* * *
22425598 CGTCTTTGATCTGTTCCACTACAACTTCAGGGAGACAAGAT
1 TGTGTTTGATCTGTTCCACTGCAACTTCAGGGAGACAAGAT
22425639 CTGTGAATTC
Statistics
Matches: 189, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
176 111 0.59
177 40 0.21
178 31 0.16
179 3 0.02
180 4 0.02
ACGTcount: A:0.23, C:0.22, G:0.22, T:0.34
Consensus pattern (178 bp):
TGTGTTTGATCTGTTCCACTGCAACTTCAGGGAGACAAGATATGATAATCTTCAGCCTGTTACCC
TACTACTTAGGGGGTTAAGACTCAATGTCTTTGATTTGCTCCACTACTGCTTAAGGAGACAAGAT
CTACAATCTTCAGCCTGTTACCCTACTACTTAGGGGGTTAAGGCTCAC
Found at i:22440700 original size:28 final size:28
Alignment explanation
Indices: 22440660--22440716 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
22440650 ATTTAGTCCC
22440660 TAGGCTCGTAAAATGAAATACATGCATT
1 TAGGCTCGTAAAATGAAATACATGCATT
*
22440688 TAGGCTCGTAAAATGAAATGCATGCATT
1 TAGGCTCGTAAAATGAAATACATGCATT
22440716 T
1 T
22440717 TCTTGATTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (28 bp):
TAGGCTCGTAAAATGAAATACATGCATT
Found at i:22441716 original size:14 final size:14
Alignment explanation
Indices: 22441668--22441718 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
22441658 TCCTATTTCC
22441668 TTTCTTTTT-TTTT
1 TTTCTTTTTCTTTT
* *
22441681 GTTTCTTATTCGTTT
1 -TTTCTTTTTCTTTT
**
22441696 TCCCTTTTTCTTTT
1 TTTCTTTTTCTTTT
22441710 TTTCTTTTT
1 TTTCTTTTT
22441719 TTCGGAATGA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 25 0.89
15 3 0.11
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.78
Consensus pattern (14 bp):
TTTCTTTTTCTTTT
Found at i:22450034 original size:21 final size:19
Alignment explanation
Indices: 22449975--22450034 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 19
22449965 TAAAAATAAT
22449975 AATAAAATAAATATAAATAGA
1 AATAAAATAAATA-AAA-AGA
*
22449996 CATAAAAATAAATAAAAACGA
1 AAT-AAAATAAATAAAAA-GA
22450017 AATAAGAATAAATAAAAA
1 AATAA-AATAAATAAAAA
22450035 TTATACAAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 3 0.09
21 21 0.62
22 10 0.29
ACGTcount: A:0.73, C:0.03, G:0.05, T:0.18
Consensus pattern (19 bp):
AATAAAATAAATAAAAAGA
Found at i:22450463 original size:54 final size:54
Alignment explanation
Indices: 22450405--22450567 Score: 132
Period size: 54 Copynumber: 3.2 Consensus size: 54
22450395 TATAAATGAA
22450405 AAAAAAACTATTCATTCTTTCATTTTAACCTCATTGTTTTTCAAAGGAAAAAAG
1 AAAAAAACTATTCATTCTTTCATTTTAACCTCATTGTTTTTCAAAGGAAAAAAG
* ** * ** * * *
22450459 AAAAAAAC--TTC--T-TAT-AAATTATCC-C-TT-TTTGGCACCTA-TAAATGAA-
1 AAAAAAACTATTCATTCTTTCATTTTAACCTCATTGTTTTTCA--AAGGAAA-AAAG
*
22450505 AAAAAAACTATTCATTCTTTCATTTTAACCTCATTGTTTTTCAAAGGAAACAAG
1 AAAAAAACTATTCATTCTTTCATTTTAACCTCATTGTTTTTCAAAGGAAAAAAG
22450559 AAAAAAACT
1 AAAAAAACT
22450568 TCTTCCTCTT
Statistics
Matches: 77, Mismatches: 18, Indels: 28
0.63 0.15 0.23
Matches are distributed among these distances:
45 5 0.06
46 13 0.17
47 4 0.05
48 9 0.12
49 2 0.03
50 2 0.03
51 2 0.03
52 9 0.12
53 4 0.05
54 22 0.29
55 5 0.06
ACGTcount: A:0.42, C:0.16, G:0.07, T:0.35
Consensus pattern (54 bp):
AAAAAAACTATTCATTCTTTCATTTTAACCTCATTGTTTTTCAAAGGAAAAAAG
Found at i:22450484 original size:100 final size:100
Alignment explanation
Indices: 22450372--22450571 Score: 391
Period size: 100 Copynumber: 2.0 Consensus size: 100
22450362 GGGGGTGGGA
22450372 ATAAATTATCCCTTTTTGGCACCTATAAATGAAAAAAAAACTATTCATTCTTTCATTTTAACCTC
1 ATAAATTATCCCTTTTTGGCACCTATAAATGAAAAAAAAACTATTCATTCTTTCATTTTAACCTC
22450437 ATTGTTTTTCAAAGGAAAAAAGAAAAAAACTTCTT
66 ATTGTTTTTCAAAGGAAAAAAGAAAAAAACTTCTT
22450472 ATAAATTATCCCTTTTTGGCACCTATAAATGAAAAAAAAACTATTCATTCTTTCATTTTAACCTC
1 ATAAATTATCCCTTTTTGGCACCTATAAATGAAAAAAAAACTATTCATTCTTTCATTTTAACCTC
*
22450537 ATTGTTTTTCAAAGGAAACAAGAAAAAAACTTCTT
66 ATTGTTTTTCAAAGGAAAAAAGAAAAAAACTTCTT
22450572 CCTCTTTCTC
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 99 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.36
Consensus pattern (100 bp):
ATAAATTATCCCTTTTTGGCACCTATAAATGAAAAAAAAACTATTCATTCTTTCATTTTAACCTC
ATTGTTTTTCAAAGGAAAAAAGAAAAAAACTTCTT
Found at i:22450813 original size:20 final size:20
Alignment explanation
Indices: 22450773--22450816 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
22450763 ATAGTTTAAA
**
22450773 AAAAATCAAAACTTTGTTTT
1 AAAAATCAAAACTTTCCTTT
*
22450793 AAAAATTAAAACTTTCCTTT
1 AAAAATCAAAACTTTCCTTT
22450813 AAAA
1 AAAA
22450817 TGACTTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.50, C:0.11, G:0.02, T:0.36
Consensus pattern (20 bp):
AAAAATCAAAACTTTCCTTT
Found at i:22456432 original size:18 final size:18
Alignment explanation
Indices: 22456409--22456459 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
22456399 TATAGAAATT
22456409 TGGGCCCACATGCCCGTG
1 TGGGCCCACATGCCCGTG
22456427 TGGGCCCACATGCCCGTG
1 TGGGCCCACATGCCCGTG
*
22456445 TGGGCCCACACGCCC
1 TGGGCCCACATGCCC
22456460 AAATTGGCCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.12, C:0.43, G:0.31, T:0.14
Consensus pattern (18 bp):
TGGGCCCACATGCCCGTG
Found at i:22464475 original size:43 final size:43
Alignment explanation
Indices: 22464405--22464561 Score: 199
Period size: 43 Copynumber: 3.7 Consensus size: 43
22464395 CAATGTCATA
* *
22464405 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * *
22464448 TTCTAGACATGGTCTTACATGAAATCACATAACGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * *
22464491 TCCCAAATATGGTCTTACATGTAATCGCAATAT-GATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCAC-ATATCGATGCCAATG
**
22464534 TCCCAGACATGGTCTTACACATAATCAC
1 TCCCAGACATGGTCTTACATGTAATCAC
22464562 GTCTTGTTAA
Statistics
Matches: 95, Mismatches: 18, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
43 92 0.97
44 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:22466647 original size:37 final size:37
Alignment explanation
Indices: 22466586--22466664 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
22466576 TTATTACGAA
* *
22466586 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
*
22466623 GTCTTACCCGGACGA-AATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGAC-ATAATCCCCACACGAAGTCATCGG
22466660 GTCTT
1 GTCTT
22466665 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACATAATCCCCACACGAAGTCATCGG
Found at i:22466861 original size:47 final size:47
Alignment explanation
Indices: 22466783--22467036 Score: 409
Period size: 47 Copynumber: 5.4 Consensus size: 47
22466773 CCCTTCGGGA
* * * * * *
22466783 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCAGTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22466830 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22466877 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22466924 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22466971 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22467018 CTTATCACATATATACACT
1 CTTATCACATATATACACT
22467037 CACATCACAA
Statistics
Matches: 193, Mismatches: 14, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 193 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22470230 original size:23 final size:24
Alignment explanation
Indices: 22470202--22470248 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
22470192 GATAGCCATC
* *
22470202 TATCAGGAAGTTCA-AGAGAGCCA
1 TATCAGGAAGCTCACAAAGAGCCA
22470225 TATCAGGAAGCTCACAAAGAGCCA
1 TATCAGGAAGCTCACAAAGAGCCA
22470249 AATAACAGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.15
Consensus pattern (24 bp):
TATCAGGAAGCTCACAAAGAGCCA
Found at i:22487802 original size:130 final size:130
Alignment explanation
Indices: 22487615--22487877 Score: 526
Period size: 130 Copynumber: 2.0 Consensus size: 130
22487605 CCGAAAATAC
22487615 TTAAGTTCAAAGTTACCAAGTGATAGTTGGATAGTGTGATGAAGTCTCCGACGGTCCCCGAATCT
1 TTAAGTTCAAAGTTACCAAGTGATAGTTGGATAGTGTGATGAAGTCTCCGACGGTCCCCGAATCT
22487680 GAGCTAGCTTTAGTTTCACTATAAAACATGGAAAATTAACAAAGTAAGCTATAAAGCTTAGTAAG
66 GAGCTAGCTTTAGTTTCACTATAAAACATGGAAAATTAACAAAGTAAGCTATAAAGCTTAGTAAG
22487745 TTAAGTTCAAAGTTACCAAGTGATAGTTGGATAGTGTGATGAAGTCTCCGACGGTCCCCGAATCT
1 TTAAGTTCAAAGTTACCAAGTGATAGTTGGATAGTGTGATGAAGTCTCCGACGGTCCCCGAATCT
22487810 GAGCTAGCTTTAGTTTCACTATAAAACATGGAAAATTAACAAAGTAAGCTATAAAGCTTAGTAAG
66 GAGCTAGCTTTAGTTTCACTATAAAACATGGAAAATTAACAAAGTAAGCTATAAAGCTTAGTAAG
22487875 TTA
1 TTA
22487878 GTATAGCAAT
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 133 1.00
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (130 bp):
TTAAGTTCAAAGTTACCAAGTGATAGTTGGATAGTGTGATGAAGTCTCCGACGGTCCCCGAATCT
GAGCTAGCTTTAGTTTCACTATAAAACATGGAAAATTAACAAAGTAAGCTATAAAGCTTAGTAAG
Found at i:22491524 original size:38 final size:38
Alignment explanation
Indices: 22491473--22491549 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
22491463 CCCCCCACAC
*
22491473 TTTAGTTGACACATTGTCTTCAATGCGTAGCCCATAAA
1 TTTAGTTGACACATTGTCCTCAATGCGTAGCCCATAAA
* *
22491511 TTTAGTTGACACATTGTCCTCAATGTGTAGTCCATAAA
1 TTTAGTTGACACATTGTCCTCAATGCGTAGCCCATAAA
22491549 T
1 T
22491550 AGATAAGGAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.36
Consensus pattern (38 bp):
TTTAGTTGACACATTGTCCTCAATGCGTAGCCCATAAA
Found at i:22494559 original size:27 final size:27
Alignment explanation
Indices: 22494529--22494678 Score: 122
Period size: 27 Copynumber: 5.5 Consensus size: 27
22494519 ATATTGAGCC
* *
22494529 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCCATATAATCAACT
* ** *
22494556 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCATATAATCAACT
* * * *
22494583 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCCATATAATCA-ACT
* ** *
22494611 CGCACACTTAGTGCCGTATGGTCAATT
1 CGCACACTTAGTGCCATATAATCAACT
* **
22494638 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCAT-ATAATCAACT
22494665 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22494679 AACAAAGTAG
Statistics
Matches: 98, Mismatches: 22, Indels: 5
0.78 0.18 0.04
Matches are distributed among these distances:
26 2 0.02
27 75 0.77
28 21 0.21
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (27 bp):
CGCACACTTAGTGCCATATAATCAACT
Found at i:22494679 original size:27 final size:27
Alignment explanation
Indices: 22494550--22494705 Score: 108
Period size: 27 Copynumber: 5.7 Consensus size: 27
22494540 TGCTATATAA
* * * *
22494550 TCAACTCGCACATTTAGTGCCACGTA-A
1 TCAATTCGCACACTTAGTG-CACATATG
*
22494577 TCAAATCGCACACTTAGTGCTACATA-G
1 TCAATTCGCACACTTAGTGC-ACATATG
* * *
22494604 TTAGACTCGCACACTTAGTGC-CGTATGG
1 TCA-ATTCGCACACTTAGTGCACATAT-G
22494632 TCAATTCGCACACTTAGTGCATCATAT-
1 TCAATTCGCACACTTAGTGCA-CATATG
* *
22494659 TCATTTCGCACACTTAGTGCAACA-AAG
1 TCAATTCGCACACTTAGTGC-ACATATG
*
22494686 T-AGAATCGCACACTTAGTGC
1 TCA-ATTCGCACACTTAGTGC
22494706 TGTACAATTT
Statistics
Matches: 106, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
26 6 0.06
27 76 0.72
28 20 0.19
29 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCACATATG
Found at i:22502625 original size:27 final size:27
Alignment explanation
Indices: 22502595--22502772 Score: 155
Period size: 27 Copynumber: 6.6 Consensus size: 27
22502585 ATATTGAGCC
* *
22502595 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
22502622 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
22502649 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
22502677 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
22502704 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
*
22502731 CGCACACTTAGTGCAACA-AAGTCGAA-T
1 CGCACACTTAGTGCTACATAA-TC-AACT
22502758 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22502773 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 99 0.80
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:22502734 original size:82 final size:81
Alignment explanation
Indices: 22502616--22502771 Score: 206
Period size: 82 Copynumber: 1.9 Consensus size: 81
22502606 TGCTATATAA
* * * *
22502616 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAG-TAGAATCGCA
22502681 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
22502698 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACAAAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACAAAGTAGAATCGCA
22502762 CACTTAGTGC
65 CACTTAGTGC
22502772 TGTACAATTT
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 20 0.31
82 44 0.69
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACAAAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22505916 original size:97 final size:97
Alignment explanation
Indices: 22505795--22506114 Score: 264
Period size: 94 Copynumber: 3.4 Consensus size: 97
22505785 GCACATTAAA
* *
22505795 GTCGATGCCATGTCCCGGACAGGTCTTAC-CT-GACTTTTATATATCGAGGCCGATACCATGTCC
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAG-CTTGTATATATCGAGGCCGAT-CCATGTCC
*
22505858 CAGATAGGTCTTACACTAGCTCTCATCTATCGGT
64 CAGACAGGTCTTACACTAGCTCTCATCTATCGGT
* * * **
22505892 GTCGATGTCATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTCGAGGCCGATGTATGTCCCA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATATCGAGGCCGATCCATGTCCCA
* * * * **
22505957 TACATGTCTTACACTAGCTCT--TGTCTCAAT
66 GACAGGTCTTACACTAGCTCTCATCTATCGGT
* * * * * * * * * *
22505987 G-CTGAT-ACATGTCCTAGACATGTCTTACATTGGCTTGTATATCTTGAGGTCGATGCATGTCCA
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATATCGAGGCCGATCCATGTCCC
* * *
22506050 AGACATGTCTTGCACTAGCTCTCAT-AAT--GT
65 AGACAGGTCTTACACTAGCTCTCATCTATCGGT
* * *
22506080 GGCCGATG-CGTGTCCCAGACAAGTCTTACACTAGC
1 -GTCGATGCCATGTCCCAGACAGGTCTTACACTAGC
22506115 ACACATATCA
Statistics
Matches: 181, Mismatches: 34, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
93 1 0.01
94 94 0.52
95 11 0.06
96 1 0.01
97 52 0.29
98 21 0.12
99 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.31
Consensus pattern (97 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATATCGAGGCCGATCCATGTCCCA
GACAGGTCTTACACTAGCTCTCATCTATCGGT
Found at i:22505972 original size:48 final size:48
Alignment explanation
Indices: 22505797--22506114 Score: 213
Period size: 48 Copynumber: 6.7 Consensus size: 48
22505787 ACATTAAAGT
* * * *
22505797 CGATGCCATGTCCCGGACAGGTCTTAC-CT-GACTTTTATATATCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAG-CTTGTATATCTCGAGGC
* * * * * * *
22505845 CGATACCATGTCCCAGATAGGTCTTACACTAGCTCT-CATCTATCG-GTGT
1 CGAT-GCATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAG-GC
* *
22505894 CGATGTCATGTCCCAGATAGGTCTTACACTAGCTTGTATATCTCGAGGC
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
* * * * * *
22505943 CGATGTATGTCCCATACATGTCTTACACTAGC-TCT-TGTCTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
* * * * * * *
22505989 TGATACATGTCCTAGACATGTCTTACATTGGCTTGTATATCTTGAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
* * * * *
22506037 CGATGCATGTCCAAGACATGTCTTGCACTAGCTCT-CATA-AT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCGAGGC
* *
22506083 CGATGCGTGTCCCAGACAAGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
22506115 ACACATATCA
Statistics
Matches: 213, Mismatches: 46, Indels: 24
0.75 0.16 0.08
Matches are distributed among these distances:
46 64 0.30
47 5 0.02
48 84 0.39
49 57 0.27
50 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (48 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGC
Found at i:22520884 original size:40 final size:40
Alignment explanation
Indices: 22520800--22520982 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
22520790 TTGAATGCTG
* *
22520800 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
** * *
22520839 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGCTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
22520880 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
22520920 TCTGGGTTAAGTCCCGAAGGCATTCGTGCGAG-T-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACT-AAT
*
22520959 TCCAGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22520983 GTATGAGTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 13
0.81 0.11 0.09
Matches are distributed among these distances:
38 1 0.01
39 26 0.21
40 81 0.67
41 13 0.11
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:22528877 original size:80 final size:81
Alignment explanation
Indices: 22528740--22528920 Score: 212
Period size: 80 Copynumber: 2.3 Consensus size: 81
22528730 TTGAATGCTG
* *
22528740 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGACATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGACATT
* *
22528804 TGTGCAAGTTATT-AAT
66 CGTGCAAGTT-TTAAAA
** *
22528820 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGAC
*
22528881 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCAAGTTTTAAAA
22528900 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
22528921 ATTGTATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGACATT
CGTGCAAGTTTTAAAA
Found at i:22528889 original size:40 final size:39
Alignment explanation
Indices: 22528740--22528923 Score: 176
Period size: 40 Copynumber: 4.6 Consensus size: 39
22528730 TTGAATGCTG
* * *
22528740 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGT-ATTAAT
** * *
22528779 ATCCGGACTAAGAT-CCGAAGACATTTGTGCAAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAG-TATTAAT
* *
22528820 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG-TATTAAT
* * *
22528860 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTATT-AAT
22528900 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22528924 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 3 0.02
40 109 0.89
41 11 0.09
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTATTAAT
Found at i:22528944 original size:39 final size:38
Alignment explanation
Indices: 22528741--22528960 Score: 156
Period size: 40 Copynumber: 5.6 Consensus size: 38
22528731 TGAATGCTGT
* * * * *
22528741 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * * * *
22528781 CCGGACTAAGAT-CCGAAGACATTTGTGCAAGTTATTAATT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * *
22528821 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
22528861 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
**
22528900 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
22528940 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
22528961 CTTGAACGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
39 33 0.22
40 108 0.72
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:22533433 original size:21 final size:23
Alignment explanation
Indices: 22533407--22533450 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
22533397 TTGGATTATT
22533407 AATTAGA-G-GTCCTTAAATAGC
1 AATTAGATGAGTCCTTAAATAGC
22533428 AATTAGATGAAGTCCTTAAATAG
1 AATTAGATG-AGTCCTTAAATAG
22533451 GAAAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 7 0.35
22 1 0.05
24 12 0.60
ACGTcount: A:0.41, C:0.11, G:0.18, T:0.30
Consensus pattern (23 bp):
AATTAGATGAGTCCTTAAATAGC
Found at i:22534475 original size:45 final size:45
Alignment explanation
Indices: 22534418--22534508 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 45
22534408 GAACCATGTG
* *
22534418 ATCTGAACTCATTGAGTTGTGGTCTAAGTTCATGATATATGTGAC
1 ATCTGAACTCATTCAGTTGTGGTCTAAGTTCATGATATATATGAC
* * *
22534463 ATCTGAGCTCATTCAGTTGTGGTCTGAGTTCATGATGTATATGAC
1 ATCTGAACTCATTCAGTTGTGGTCTAAGTTCATGATATATATGAC
22534508 A
1 A
22534509 CATGTTTTGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.25, C:0.14, G:0.23, T:0.37
Consensus pattern (45 bp):
ATCTGAACTCATTCAGTTGTGGTCTAAGTTCATGATATATATGAC
Found at i:22535148 original size:148 final size:151
Alignment explanation
Indices: 22534843--22535158 Score: 387
Period size: 148 Copynumber: 2.1 Consensus size: 151
22534833 AAAAGTTTCA
* * * *
22534843 ATTTTTTTAAAAAAAATAGAAAGTTTAGATTTTAATAAATAAAAATCTGTTTTTTTTAGTCATTT
1 ATTTTTTTAAAAAAAAGAGAAAATTTAGATTTTAATAAATAAAAA-CTATTTTTTTAAGTCATTT
*
22534908 TAAATGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCT
65 TAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCT
*
22534973 TTAATATTTAAGAAAATAGTGG
130 TTAATATTTAAGAAAATAATGG
**
22534995 A--TTTTTAAAAAATGGAGAAAATTTAGATTTTGAA-AAATAAAAA-TATTTTTTTAAGTCATTT
1 ATTTTTTTAAAAAAAAGAGAAAATTTAGATTTT-AATAAATAAAAACTATTTTTTTAAGTCATTT
* ** * *
22535056 TAAAGGAAAGTTT-AAATTTTTAAACAAAGTTTTTGATTTTTTT-AACTATTTTGAAAT-AAGGT
65 TAAAGGAAAGTTTAAAATTTTAAAACAAAG-TTTTGATTTTTTTCAACTATTTCAAAATAAAAGC
* *
22535118 TTTTATTTTTAAGAAAAGTAAT-G
129 TTTAATATTTAAGAAAA-TAATGG
22535141 ATTTTTTTCAAAATAAAA
1 ATTTTTTT-AAAA-AAAA
22535159 CTTTGGTTTT
Statistics
Matches: 140, Mismatches: 17, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
146 20 0.14
147 30 0.21
148 46 0.33
149 4 0.03
150 37 0.26
151 2 0.01
152 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (151 bp):
ATTTTTTTAAAAAAAAGAGAAAATTTAGATTTTAATAAATAAAAACTATTTTTTTAAGTCATTTT
AAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTCAACTATTTCAAAATAAAAGCTT
TAATATTTAAGAAAATAATGG
Found at i:22535761 original size:10 final size:10
Alignment explanation
Indices: 22535727--22535784 Score: 53
Period size: 10 Copynumber: 5.5 Consensus size: 10
22535717 CTTGTATAAT
22535727 TTTTTATTTA
1 TTTTTATTTA
* *
22535737 TTCTTATTTTG
1 TTTTTA-TTTA
22535748 TTTTTATTTA
1 TTTTTATTTA
*
22535758 TTTTCATGTATA
1 TTTTTAT-T-TA
*
22535770 TTTATATTTA
1 TTTTTATTTA
22535780 TTTTT
1 TTTTT
22535785 TTTTTTACAC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
10 20 0.54
11 10 0.27
12 7 0.19
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:22540219 original size:27 final size:27
Alignment explanation
Indices: 22540178--22540247 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
22540168 AAACATACAT
*
22540178 CACATAGGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
* * * *
22540205 CATATAAGGGCAAAATATTCATTTTAC
1 CACATAAGGGCAAAACAGTCATCTTAC
22540232 CACATAAGGGCAAAAC
1 CACATAAGGGCAAAAC
22540248 GATTATTTTA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.21
Consensus pattern (27 bp):
CACATAAGGGCAAAACAGTCATCTTAC
Found at i:22540255 original size:27 final size:26
Alignment explanation
Indices: 22540178--22540257 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 26
22540168 AAACATACAT
* * *
22540178 CACATAGGGGCAAAACAGTCATCTTAC
1 CACATAAGGGCAAAACA-TTATTTTAC
* *
22540205 CATATAAGGGCAAAATATTCATTTTAC
1 CACATAAGGGCAAAACATT-ATTTTAC
22540232 CACATAAGGGCAAAACGATTATTTTA
1 CACATAAGGGCAAAAC-ATTATTTTA
22540258 TCAATTTGGG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
26 1 0.02
27 40 0.91
28 3 0.07
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (26 bp):
CACATAAGGGCAAAACATTATTTTAC
Found at i:22544252 original size:40 final size:40
Alignment explanation
Indices: 22544197--22544454 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
22544187 CAGATGATAA
* * * *
22544197 CCGGGCTAAGTCCCGAAAGCATTTGTGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATA-T
* *
22544237 CCGGGTTAAGTCCCGAAGGCATTCGTGCAAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
22544277 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTTTAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
22544317 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* *
22544357 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* * *
22544397 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTA-CTATAT
* *
22544437 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22544455 TACTTGGCTT
Statistics
Matches: 196, Mismatches: 19, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.08
40 179 0.91
41 2 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
Found at i:22552493 original size:40 final size:40
Alignment explanation
Indices: 22552438--22552695 Score: 326
Period size: 40 Copynumber: 6.5 Consensus size: 40
22552428 CAGATGATAA
* * * * *
22552438 CCGGGCTATGTCCCGAAAGCATTTGTGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATA-T
22552478 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
22552518 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTTTAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
22552558 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* *
22552598 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* * *
22552638 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTA-CTATAT
* * *
22552678 -CTGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22552696 TACTTGGCTT
Statistics
Matches: 197, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.08
40 179 0.91
41 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
Found at i:22560735 original size:40 final size:40
Alignment explanation
Indices: 22560680--22560937 Score: 335
Period size: 40 Copynumber: 6.5 Consensus size: 40
22560670 CAGATGATAA
* * * * *
22560680 CCGGGCTATGTCCCGAAAGCATTTGTGCTAG-TGGCTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCT-ACTATA-T
22560720 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
22560760 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTTTAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
*
22560800 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* *
22560840 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
* * *
22560880 CCGGGCTATGTCCCGAAGGTATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTA-CTATAT
* *
22560920 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
22560938 TACTTGGCTT
Statistics
Matches: 198, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 15 0.08
40 181 0.91
41 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATAT
Found at i:22563002 original size:27 final size:27
Alignment explanation
Indices: 22562910--22563059 Score: 144
Period size: 27 Copynumber: 5.5 Consensus size: 27
22562900 ATATTGAGCC
* *
22562910 CGCACACTCAGTGCTATACA-A-TCAAAT
1 CGCACACTTAGTGC-A-ACATAGTCAATT
* * *
22562937 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-ATT
** *
22562965 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAATT
* * *
22562992 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAATT
22563019 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCAACATAGTC-AATT
22563046 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22563060 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
25 3 0.03
26 1 0.01
27 75 0.74
28 23 0.23
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAATT
Found at i:22573046 original size:46 final size:46
Alignment explanation
Indices: 22572996--22573171 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
22572986 TGGTTGAGCA
22572996 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22573042 TCCGAACTCGTTGAGTTGAGTTCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
22573087 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
22573135 CCCGAGCTCGTAGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22573172 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:22573152 original size:93 final size:93
Alignment explanation
Indices: 22572993--22573164 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
22572983 GGATGGTTGA
* * *
22572993 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAACTCGTAGAGT
*
22573058 TGAGTTCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
22573086 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAGCTCGTAGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAACTCGTAGAGT
22573151 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
22573165 CTTATGGGCG
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAATGCCCGAACTCGTAGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22577611 original size:40 final size:40
Alignment explanation
Indices: 22577527--22577710 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
22577517 TTGAATGCTG
* * * *
22577527 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
22577566 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
22577607 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
22577647 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
22577687 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22577711 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:22577664 original size:80 final size:81
Alignment explanation
Indices: 22577527--22577707 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
22577517 TTGAATGCTG
* *
22577527 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
22577591 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
22577607 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
22577668 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
22577687 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
22577708 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:22579624 original size:11 final size:11
Alignment explanation
Indices: 22579598--22579630 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
22579588 TATTTGTTGA
22579598 AAAACAAAAGAG
1 AAAACAAAA-AG
22579610 AAAACAAAAAG
1 AAAACAAAAAG
22579621 AAAACAAAAA
1 AAAACAAAAA
22579631 ATAAAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.57
12 9 0.43
ACGTcount: A:0.82, C:0.09, G:0.09, T:0.00
Consensus pattern (11 bp):
AAAACAAAAAG
Found at i:22579631 original size:13 final size:12
Alignment explanation
Indices: 22579598--22579636 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
22579588 TATTTGTTGA
*
22579598 AAAACAAAAGAG
1 AAAACAAAAAAG
22579610 AAAAC-AAAAAG
1 AAAACAAAAAAG
*
22579621 AAAACAAAAAAT
1 AAAACAAAAAAG
22579633 AAAA
1 AAAA
22579637 ACAATCACCT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.82, C:0.08, G:0.08, T:0.03
Consensus pattern (12 bp):
AAAACAAAAAAG
Found at i:22584304 original size:37 final size:36
Alignment explanation
Indices: 22584252--22584364 Score: 99
Period size: 37 Copynumber: 3.1 Consensus size: 36
22584242 ATTCCAAAAA
*
22584252 TAATATTATTTTAATAGTTTAATATTAAATTAAATT
1 TAATATTATCTTAATAGTTTAATATTAAATTAAATT
* *
22584288 TAATACTTATCTTAATAGTATT-TTATT-AATTTAATGT
1 TAATA-TTATCTTAATAGT-TTAATATTAAATTAAAT-T
*
22584325 TAACGTGATTATCTTAATA-TTTAAT-TTAATTTAATATT
1 TAA--T-ATTATCTTAATAGTTTAATATTAAATTAA-ATT
22584363 TA
1 TA
22584365 TCTATATTGT
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
36 12 0.19
37 24 0.39
38 11 0.18
39 14 0.23
40 1 0.02
ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53
Consensus pattern (36 bp):
TAATATTATCTTAATAGTTTAATATTAAATTAAATT
Found at i:22593078 original size:21 final size:21
Alignment explanation
Indices: 22593052--22593095 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
22593042 AATCATACAT
22593052 TACATCACATAATACATTACC
1 TACATCACATAATACATTACC
*
22593073 TACATCACATGATACATTACC
1 TACATCACATAATACATTACC
22593094 TA
1 TA
22593096 AACCCTTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.27, G:0.02, T:0.30
Consensus pattern (21 bp):
TACATCACATAATACATTACC
Found at i:22600218 original size:25 final size:25
Alignment explanation
Indices: 22600184--22600232 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
22600174 CATTAATTAT
*
22600184 ATATATTTACCATACATGCAATATA
1 ATATACTTACCATACATGCAATATA
22600209 ATATACTTACCATACATGCAATAT
1 ATATACTTACCATACATGCAATAT
22600233 CAAGTATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.43, C:0.18, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATACTTACCATACATGCAATATA
Found at i:22601412 original size:29 final size:29
Alignment explanation
Indices: 22601372--22601431 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
22601362 TTTATTTCAT
*
22601372 AATTTAACCCCTCAATTTACACTTTT-CTC
1 AATTTAACCCCT-AATATACACTTTTACTC
* *
22601401 AATTTAATCCCTAATATACATTTTTACTC
1 AATTTAACCCCTAATATACACTTTTACTC
22601430 AA
1 AA
22601432 AGTCACTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 11 0.41
29 16 0.59
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.42
Consensus pattern (29 bp):
AATTTAACCCCTAATATACACTTTTACTC
Done.