Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 70 of 259
Found at i:22607539 original size:29 final size:30
Alignment explanation
Indices: 22607467--22607540 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
22607457 TTTTTAGTGA
* * *
22607467 AAATGTAAAATAGGGATTAAATTGAGAAAT
1 AAATGAAAAATATGGATTAAAATGAGAAAT
* *
22607497 -ATTGAAAATTTATGG-TTAAAATGAGAAAT
1 AAATGAAAA-ATATGGATTAAAATGAGAAAT
22607526 AAATGAAAAATATGG
1 AAATGAAAAATATGG
22607541 GCTCCTAGGG
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
29 24 0.69
30 11 0.31
ACGTcount: A:0.53, C:0.00, G:0.19, T:0.28
Consensus pattern (30 bp):
AAATGAAAAATATGGATTAAAATGAGAAAT
Found at i:22616129 original size:51 final size:51
Alignment explanation
Indices: 22616048--22616215 Score: 291
Period size: 51 Copynumber: 3.3 Consensus size: 51
22616038 ACTTCTGATC
* *
22616048 AGTGACAAGTGATAAGTGGTAGCCTCAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* *
22616099 AGTGACAAATGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
22616150 AGTGATAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
22616201 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
22616216 ATGTGATCAG
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 109 1.00
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:22619669 original size:40 final size:40
Alignment explanation
Indices: 22619614--22619829 Score: 314
Period size: 40 Copynumber: 5.4 Consensus size: 40
22619604 GATGATAACG
* *
22619614 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
22619654 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCC
22619694 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
**
22619734 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
*
22619774 GGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCC
* *
22619814 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
22619830 TACTTGGTTT
Statistics
Matches: 166, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 16 0.10
40 149 0.90
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:22626537 original size:48 final size:48
Alignment explanation
Indices: 22626476--22626944 Score: 749
Period size: 48 Copynumber: 9.8 Consensus size: 48
22626466 TGTTACAACA
* * *
22626476 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
*
22626524 TTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
22626572 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
22626620 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
22626668 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
22626716 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
22626764 TTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* *
22626812 TTCACATTCGTCATTCGGCTTTACCACATATACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
22626860 TTCACATTAGCCATACGGCCTTACCACATACACATATCACACATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
* * *
22626908 TTCACATTAGCCATTCGGCTTCACCACACATATATAT
1 TTCACATTAGCCATTCGGCTTTACCACATATACATAT
22626945 TTATCTTGTA
Statistics
Matches: 389, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 389 1.00
ACGTcount: A:0.32, C:0.28, G:0.06, T:0.34
Consensus pattern (48 bp):
TTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATATAT
Found at i:22632127 original size:80 final size:80
Alignment explanation
Indices: 22631991--22632246 Score: 349
Period size: 80 Copynumber: 3.2 Consensus size: 80
22631981 GATGATAACG
* * *
22631991 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCTGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
22632056 CGAGGTACTA-ATTCC
66 CGAGGTACTATA-TCC
* *
22632071 GGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCAGGCTAAGTCCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
*
22632136 CGAGTTACTATATCC
66 CGAGGTACTATATCC
** *
22632151 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGT
*
22632215 GTGA-GTAGCTATATCC
65 GCGAGGTA-CTATATCC
* *
22632231 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
22632247 TACTTGGTTT
Statistics
Matches: 158, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
79 18 0.11
80 139 0.88
81 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTG
CGAGGTACTATATCC
Found at i:22632205 original size:120 final size:120
Alignment explanation
Indices: 22631992--22632213 Score: 358
Period size: 120 Copynumber: 1.9 Consensus size: 120
22631982 ATGATAACGG
* *
22631992 GGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCTGAAGGCATTTGTGC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
** *
22632057 GAGGTACTAATTCCGGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
66 GAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
*
22632112 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTGTG
22632176 CGAACTACT-ATATCCGGGCTAAGTCCCGAAGGCATTTG
65 CGAACTACTAAT-TCCGGGCTAAGTCCCGAAGGCATTTG
22632214 AGTGAGTAGC
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
119 4 0.04
120 90 0.96
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (120 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGC
GAACTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCA
Found at i:22632232 original size:40 final size:39
Alignment explanation
Indices: 22631991--22632213 Score: 324
Period size: 40 Copynumber: 5.6 Consensus size: 39
22631981 GATGATAACG
*
22631991 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTAATTCC
*
22632031 GGGCTAAGTCCTGAAGGCATTTGTGCGAGGTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGA-GTACTAATTCC
*
22632071 GGGCTATGTCCCGAAGGCATTTGTGCGAGTTACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAATTCC
*
22632111 AGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAT-TCC
*
22632151 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACT-ATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTAAT-TCC
22632191 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
22632214 AGTGAGTAGC
Statistics
Matches: 171, Mismatches: 8, Indels: 8
0.91 0.04 0.04
Matches are distributed among these distances:
39 3 0.02
40 165 0.96
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTCC
Found at i:22635833 original size:12 final size:12
Alignment explanation
Indices: 22635816--22635842 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22635806 TCAAGCTCGA
22635816 ATTCTTCTTTCT
1 ATTCTTCTTTCT
22635828 ATTCTTCTTTCT
1 ATTCTTCTTTCT
22635840 ATT
1 ATT
22635843 TCTGTCTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (12 bp):
ATTCTTCTTTCT
Found at i:22641460 original size:30 final size:30
Alignment explanation
Indices: 22641421--22641485 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
22641411 TTTCTAATCC
*
22641421 TTAAAATTAATCGTGAGATAGATTTAG-AT
1 TTAAAATTAATCGTCAGATAGATTTAGAAT
*
22641450 TTAAACATTAATCGTCAGATATATTTAGAAT
1 TTAAA-ATTAATCGTCAGATAGATTTAGAAT
22641481 TTAAA
1 TTAAA
22641486 TTATGTTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 5 0.16
30 20 0.62
31 7 0.22
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.38
Consensus pattern (30 bp):
TTAAAATTAATCGTCAGATAGATTTAGAAT
Found at i:22641589 original size:14 final size:14
Alignment explanation
Indices: 22641570--22641628 Score: 55
Period size: 14 Copynumber: 4.0 Consensus size: 14
22641560 ATTAATAATC
22641570 TAAATAAAAATTTT
1 TAAATAAAAATTTT
*
22641584 TAAATAATTTAATTATT
1 TAAATAA--AAATT-TT
*
22641601 TAAATAAAAAATTT
1 TAAATAAAAATTTT
* *
22641615 CAAATAATAATTTT
1 TAAATAAAAATTTT
22641629 AGTATGCTAC
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
14 20 0.56
15 3 0.08
16 4 0.11
17 9 0.25
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (14 bp):
TAAATAAAAATTTT
Found at i:22641605 original size:31 final size:31
Alignment explanation
Indices: 22641561--22641622 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
22641551 AAAAAAAAAA
* *
22641561 TTAATAATCTAAATAAAAATTTTTAAATAAT
1 TTAATAATCTAAATAAAAAATTTCAAATAAT
* *
22641592 TTAATTATTTAAATAAAAAATTTCAAATAAT
1 TTAATAATCTAAATAAAAAATTTCAAATAAT
22641623 AATTTTAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (31 bp):
TTAATAATCTAAATAAAAAATTTCAAATAAT
Found at i:22644915 original size:30 final size:30
Alignment explanation
Indices: 22644876--22644932 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
22644866 TTTTATAAAT
22644876 AATTAATA-TTTATT-ACTTAAAAATATTTAA
1 AATTAATATTTTATTCA-TT-AAAATATTTAA
*
22644906 AATTTATATTTTATTCATTAAAATATT
1 AATTAATATTTTATTCATTAAAATATT
22644933 AACAAGAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
30 15 0.62
31 8 0.33
32 1 0.04
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (30 bp):
AATTAATATTTTATTCATTAAAATATTTAA
Found at i:22646248 original size:29 final size:30
Alignment explanation
Indices: 22646193--22646251 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
22646183 ATCTCAAAAT
* *
22646193 TATACATGAACTTTGATTTAATGTGCAATTG
1 TATACATGAACTTTAATTT-AGGTGCAATTG
22646224 TATACATGAACTTTAATTT-GGTGCAATT
1 TATACATGAACTTTAATTTAGGTGCAATT
22646252 ATTCAATTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 8 0.31
31 18 0.69
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (30 bp):
TATACATGAACTTTAATTTAGGTGCAATTG
Found at i:22647465 original size:1 final size:1
Alignment explanation
Indices: 22647459--22647484 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
22647449 ACTAGTGAGG
22647459 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
22647485 GCAAAATACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22649863 original size:14 final size:14
Alignment explanation
Indices: 22649846--22649892 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
22649836 ATTTAATTCA
22649846 TATTATATTTTAGT
1 TATTATATTTTAGT
* **
22649860 TATTTATATTTGAAA
1 TA-TTATATTTTAGT
22649875 TATTATATTTTAGT
1 TATTATATTTTAGT
22649889 TATT
1 TATT
22649893 TACATTATCA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (14 bp):
TATTATATTTTAGT
Found at i:22649868 original size:15 final size:15
Alignment explanation
Indices: 22649848--22649894 Score: 60
Period size: 15 Copynumber: 3.2 Consensus size: 15
22649838 TTAATTCATA
22649848 TTATATTTTAGTTAT
1 TTATATTTTAGTTAT
* **
22649863 TTATATTTGAAATA-
1 TTATATTTTAGTTAT
22649877 TTATATTTTAGTTAT
1 TTATATTTTAGTTAT
22649892 TTA
1 TTA
22649895 CATTATCATT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
14 11 0.44
15 14 0.56
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (15 bp):
TTATATTTTAGTTAT
Found at i:22652900 original size:13 final size:13
Alignment explanation
Indices: 22652879--22652909 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
22652869 TGTGGTGCAG
*
22652879 AGGCTTAGAAAAA
1 AGGCCTAGAAAAA
22652892 AGGCCTAGAAAAA
1 AGGCCTAGAAAAA
22652905 AGGCC
1 AGGCC
22652910 AGAGTTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.16, G:0.26, T:0.10
Consensus pattern (13 bp):
AGGCCTAGAAAAA
Found at i:22660462 original size:18 final size:17
Alignment explanation
Indices: 22660441--22660485 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
22660431 TTTAAAAAAA
*
22660441 TTATAAATTTTGTAATTT
1 TTATAAATTTT-TAAATT
22660459 TTATAAATATTTTAAATT
1 TTATAAAT-TTTTAAATT
*
22660477 TTAAAAATT
1 TTATAAATT
22660486 ATTTTGAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 1 0.04
18 20 0.83
19 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TTATAAATTTTTAAATT
Found at i:22660488 original size:19 final size:18
Alignment explanation
Indices: 22660457--22660495 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
22660447 ATTTTGTAAT
*
22660457 TTTTATAAATATTTTAAA
1 TTTTAAAAATATTTTAAA
*
22660475 TTTTAAAAATTATTTTGAA
1 TTTTAAAAA-TATTTTAAA
22660494 TT
1 TT
22660496 ATTTGTTGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (18 bp):
TTTTAAAAATATTTTAAA
Found at i:22661951 original size:62 final size:61
Alignment explanation
Indices: 22661874--22661989 Score: 146
Period size: 62 Copynumber: 1.9 Consensus size: 61
22661864 TCAATTTGTA
* * *
22661874 TTAAATATTATAATTATTTAAA-TTTATTTTTTACCTAATTAATATTTA-AATACTATTTATAC
1 TTAAATATTACAATTA-TTAAACTTTA--CTTTACCAAATTAATATTTAGAATACTATTTATAC
* *
22661936 TTAAATATTGCAATTATTAAACTTTACTTTATCAAATTAATATTTAGAATACTA
1 TTAAATATTACAATTATTAAACTTTACTTTACCAAATTAATATTTAGAATACTA
22661990 CCTTGTATTA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
60 17 0.36
61 12 0.26
62 18 0.38
ACGTcount: A:0.41, C:0.08, G:0.02, T:0.49
Consensus pattern (61 bp):
TTAAATATTACAATTATTAAACTTTACTTTACCAAATTAATATTTAGAATACTATTTATAC
Found at i:22663717 original size:10 final size:10
Alignment explanation
Indices: 22663704--22663728 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
22663694 GTAAATTTTA
22663704 TTTTTATAAT
1 TTTTTATAAT
22663714 TTTTTATAAT
1 TTTTTATAAT
22663724 TTTTT
1 TTTTT
22663729 TTCTAGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:22665452 original size:3 final size:3
Alignment explanation
Indices: 22665444--22665492 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
22665434 AACAAATCAA
22665444 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
22665492 A
1 A
22665493 TCCAACCAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22678065 original size:37 final size:37
Alignment explanation
Indices: 22678024--22678099 Score: 134
Period size: 37 Copynumber: 2.1 Consensus size: 37
22678014 TAGCTTATGT
*
22678024 GTTAGACTCGAAAGTGAATGATAAGAAAGTTGAATCA
1 GTTAGACCCGAAAGTGAATGATAAGAAAGTTGAATCA
*
22678061 GTTAGACCCGAATGTGAATGATAAGAAAGTTGAATCA
1 GTTAGACCCGAAAGTGAATGATAAGAAAGTTGAATCA
22678098 GT
1 GT
22678100 GCCTGTTGTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.41, C:0.09, G:0.25, T:0.25
Consensus pattern (37 bp):
GTTAGACCCGAAAGTGAATGATAAGAAAGTTGAATCA
Found at i:22680645 original size:27 final size:28
Alignment explanation
Indices: 22680615--22680671 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 28
22680605 ATTTTTGATG
*
22680615 AAATGAGTTATTTG-GG-CTAATTTGTGA
1 AAATGAGGT-TTTGAGGACTAATTTGTGA
22680642 AAATGAGGTTTTGAAGGACTAATTTGTGA
1 AAATGAGGTTTTG-AGGACTAATTTGTGA
22680671 A
1 A
22680672 TTTAACATGT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 2 0.08
29 12 0.46
ACGTcount: A:0.33, C:0.04, G:0.26, T:0.37
Consensus pattern (28 bp):
AAATGAGGTTTTGAGGACTAATTTGTGA
Found at i:22681713 original size:12 final size:13
Alignment explanation
Indices: 22681696--22681727 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
22681686 ACAAATGTTA
22681696 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
22681708 AGTTTTGATGCAT
1 AGTTTTGATGCAT
22681721 -GTTTTGA
1 AGTTTTGA
22681728 ACTATGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:22684923 original size:55 final size:53
Alignment explanation
Indices: 22684836--22685090 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
22684826 ATTAGCGTTT
* *
22684836 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAACTGGTAGGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAA-TGGTA-AGTTTCTAAGGC
* * * * *
22684891 AAGGATACCATGTAAGACTATGTCAAGACATGGCATTGGTAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTT--TCTAAGGC
* * * * *
22684946 AAAGG-TCCCACGTAAGACCATGCCAAGGCAT-GACATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGA-AATGGTAAGTTTC-TAAGGC
* * *
22684999 AAGGATACCATGTATGACCATGTCGAGACATGGAAATGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTTCTAAGGC
* * *
22685048 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAG
22685091 GTACCCGTGT
Statistics
Matches: 164, Mismatches: 28, Indels: 22
0.77 0.13 0.10
Matches are distributed among these distances:
49 38 0.23
52 7 0.04
53 36 0.22
54 12 0.07
55 67 0.41
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAAATGGTAAGTTTCTAAGGC
Found at i:22685039 original size:108 final size:110
Alignment explanation
Indices: 22684847--22685043 Score: 292
Period size: 108 Copynumber: 1.8 Consensus size: 110
22684837 AGGATACCAT
* *
22684847 GTAAGACCATGCCAAGGCATGGAAACTGGTAGGGTTTCTAAGGCAAGGATACCATGTAAGACTAT
1 GTAAGACCATGCCAAGGCATGGAAACTGGTAGAGTTTCTAAGGCAAGGATACCATGTAAGACCAT
* *
22684912 GTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTCCCAC
66 GTCAAGACATGGAAATGGTAAGTTACTATAAGGCAAAGGTCCCAC
* * *
22684957 GTAAGACCATGCCAAGGCAT-GACATTGGT-GAG-TTCATAAGGCAAGGATACCATGTATGACCA
1 GTAAGACCATGCCAAGGCATGGAAACTGGTAGAGTTTC-TAAGGCAAGGATACCATGTAAGACCA
*
22685019 TGTCGAGACATGGAAATGGTAAGTT
65 TGTCAAGACATGGAAATGGTAAGTT
22685044 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.62
109 7 0.09
110 20 0.26
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (110 bp):
GTAAGACCATGCCAAGGCATGGAAACTGGTAGAGTTTCTAAGGCAAGGATACCATGTAAGACCAT
GTCAAGACATGGAAATGGTAAGTTACTATAAGGCAAAGGTCCCAC
Found at i:22700453 original size:35 final size:35
Alignment explanation
Indices: 22700407--22700477 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
22700397 GTTCATATGT
22700407 TAAAAATAAGCTTTAGAATAATTGTATTTAAATGC
1 TAAAAATAAGCTTTAGAATAATTGTATTTAAATGC
*
22700442 TAAAAATAAGCTTTAGAATACTTGTATTTAAATGC
1 TAAAAATAAGCTTTAGAATAATTGTATTTAAATGC
22700477 T
1 T
22700478 TTAATATAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.44, C:0.07, G:0.11, T:0.38
Consensus pattern (35 bp):
TAAAAATAAGCTTTAGAATAATTGTATTTAAATGC
Found at i:22704143 original size:16 final size:16
Alignment explanation
Indices: 22704124--22704158 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
22704114 ATTACGAATC
*
22704124 AGATATCTCCCTGTAT
1 AGATATCTCCATGTAT
22704140 AGATATCTCCATGTAT
1 AGATATCTCCATGTAT
22704156 AGA
1 AGA
22704159 GTTTCAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (16 bp):
AGATATCTCCATGTAT
Found at i:22729311 original size:28 final size:28
Alignment explanation
Indices: 22729279--22729334 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
22729269 AACTTCCTAA
22729279 ATGATAAGTGGAATTCTTGAATTGGAGT
1 ATGATAAGTGGAATTCTTGAATTGGAGT
*
22729307 ATGATGAGTGGAATTCTTGAATTGGAGT
1 ATGATAAGTGGAATTCTTGAATTGGAGT
22729335 TATGGAGACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.04, G:0.30, T:0.36
Consensus pattern (28 bp):
ATGATAAGTGGAATTCTTGAATTGGAGT
Found at i:22729582 original size:11 final size:10
Alignment explanation
Indices: 22729565--22729626 Score: 54
Period size: 10 Copynumber: 5.8 Consensus size: 10
22729555 CTTAAAGATG
22729565 AAATAAAAAT
1 AAATAAAAAT
*
22729575 AAATTAAAAT
1 AAATAAAAAT
*
22729585 AAAAAGTAAAAT
1 AAATA--AAAAT
22729597 AAAAGTAAAAAT
1 -AAA-TAAAAAT
22729609 -AATAAATAAT
1 AAATAAA-AAT
22729619 AAATAAAA
1 AAATAAAA
22729627 GTCTTTAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
9 4 0.10
10 18 0.43
11 6 0.14
12 10 0.24
13 3 0.07
14 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:22729615 original size:7 final size:6
Alignment explanation
Indices: 22729565--22729626 Score: 58
Period size: 6 Copynumber: 10.3 Consensus size: 6
22729555 CTTAAAGATG
* *
22729565 AAATAA AAAT-- AAATTA AAATAA AAAGT-A AAATAA AAGTAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAA-TAA AAATAA AAATAA AAATAA
22729611 TAAATAA TAAATAA AA
1 -AAATAA -AAATAA AA
22729627 GTCTTTAATC
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
4 4 0.08
5 1 0.02
6 29 0.60
7 14 0.29
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (6 bp):
AAATAA
Found at i:22729620 original size:34 final size:35
Alignment explanation
Indices: 22729542--22729621 Score: 85
Period size: 34 Copynumber: 2.3 Consensus size: 35
22729532 ATTGTTCAAT
* ** *
22729542 ATAAATTATAAAACTTAAAGATGAAATAAAAATAA
1 ATAAATAATAAAAAGTAAAGATAAAATAAAAATAA
*
22729577 ATTAA-AATAAAAAGTAAA-ATAAAAGTAAAAAT-A
1 ATAAATAATAAAAAGTAAAGATAAAA-TAAAAATAA
22729610 ATAAATAATAAA
1 ATAAATAATAAA
22729622 TAAAAGTCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
33 10 0.27
34 23 0.62
35 4 0.11
ACGTcount: A:0.70, C:0.01, G:0.05, T:0.24
Consensus pattern (35 bp):
ATAAATAATAAAAAGTAAAGATAAAATAAAAATAA
Found at i:22739447 original size:40 final size:40
Alignment explanation
Indices: 22739403--22739574 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
22739393 GGACTAAGAT
*
22739403 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
*
22739443 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * *
22739483 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
* * * * *
22739523 CCGAAGGCA-TTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
22739562 CCGAAGGCATTTG
1 CCGAAGGCATTTG
22739575 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 12, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.29
40 81 0.69
41 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTC
Found at i:22739488 original size:80 final size:79
Alignment explanation
Indices: 22739403--22739574 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
22739393 GGACTAAGAT
*
22739403 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
22739467 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
22739483 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
22739548 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
22739562 CCGAAGGCATTTG
1 CCGAAGGCATTTG
22739575 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:22739592 original size:79 final size:80
Alignment explanation
Indices: 22739430--22739607 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
22739420 AGATACAAAT
* * * *
22739430 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
22739495 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
22739510 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
22739574 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
22739589 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
22739608 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:22743923 original size:41 final size:41
Alignment explanation
Indices: 22743866--22743943 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
22743856 GTAAGACCTG
22743866 GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTAACTT
1 GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTAACTT
* *
22743907 GATGTCGAACCCAAAGGAACTAAAAGTACTATTATTA
1 GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTA
22743944 GCTTTCTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (41 bp):
GATGTCGAACACAAAGGAACTAAAAGTACTAGTATTAACTT
Found at i:22751933 original size:28 final size:28
Alignment explanation
Indices: 22751868--22752046 Score: 288
Period size: 28 Copynumber: 6.4 Consensus size: 28
22751858 GAGATTGGCG
* * * *
22751868 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
22751897 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
22751925 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
22751953 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
22751981 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
22752009 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
22752036 CTGAGTGTGCG
1 CTAAGTGTGCG
22752047 GACTTAATAT
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
27 24 0.17
28 104 0.73
29 15 0.10
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:22755027 original size:40 final size:40
Alignment explanation
Indices: 22754846--22755029 Score: 244
Period size: 40 Copynumber: 4.6 Consensus size: 40
22754836 TATTCGAATG
* *
22754846 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* * * *
22754886 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGACT
* *
22754926 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
22754966 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
* *
22755006 ATATCCGGGCTAAAACTCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
22755030 CTTGTGCGAG
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 122 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGACT
Found at i:22759282 original size:42 final size:43
Alignment explanation
Indices: 22759179--22759283 Score: 124
Period size: 43 Copynumber: 2.5 Consensus size: 43
22759169 CAATGCCAAC
* * * *
22759179 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCAATACCACT
* * *
22759222 ATCCCAGACAGGGTCTTACATGAAATCAAATA-CAATACTGA-T
1 GTCCCAGACATGGTCTTACATGAAATCAAATATCAATAC-CACT
22759264 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
22759284 CATAAATCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
42 23 0.44
43 29 0.56
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGAAATCAAATATCAATACCACT
Found at i:22772936 original size:19 final size:20
Alignment explanation
Indices: 22772912--22772949 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
22772902 GGTACCACCA
22772912 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
22772931 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
22772950 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:22773286 original size:93 final size:93
Alignment explanation
Indices: 22773179--22773349 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
22773169 GCCCCTAAGT
* *
22773179 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
22773244 CGAGTTCGAATGCCTAGTTACATCTCAC
66 CGAGTTCGAATGCCTAGTTACATCTCAC
* * * *
22773272 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
22773337 CGAGTTCGGATGC
66 CGAGTTCGAATGC
22773350 TCAATCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGAATGCCTAGTTACATCTCAC
Found at i:22773365 original size:46 final size:49
Alignment explanation
Indices: 22773174--22773349 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 49
22773164 AACCCGCCCC
* * *
22773174 TAAGTGAACTCAGACTCAACTCAACGAGCTCGG--G-C-GTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTT-ACATCCA
* *
22773220 TAAATGAACTCGGACTCAACTCAACGAGTTCGAATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-AGTTACATCCA
* * * *
22773268 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
22773313 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
22773350 TCAATCATCC
Statistics
Matches: 107, Mismatches: 12, Indels: 19
0.78 0.09 0.14
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 58 0.54
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (49 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAGTTACATCCA
Found at i:22785013 original size:18 final size:21
Alignment explanation
Indices: 22784978--22785019 Score: 63
Period size: 18 Copynumber: 2.1 Consensus size: 21
22784968 AATTTTTTCC
22784978 TCTTCTTTCTTCCATTCTTCA
1 TCTTCTTTCTTCCATTCTTCA
22784999 TCTTC-TTC-TCC-TTCTTCA
1 TCTTCTTTCTTCCATTCTTCA
22785017 TCT
1 TCT
22785020 AGGTAACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 10 0.48
19 3 0.14
20 3 0.14
21 5 0.24
ACGTcount: A:0.07, C:0.36, G:0.00, T:0.57
Consensus pattern (21 bp):
TCTTCTTTCTTCCATTCTTCA
Found at i:22787646 original size:1 final size:1
Alignment explanation
Indices: 22787640--22787695 Score: 103
Period size: 1 Copynumber: 56.0 Consensus size: 1
22787630 CAGATCATCC
*
22787640 AAAAAAAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22787696 TAAATTTCAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 53 1.00
ACGTcount: A:0.98, C:0.00, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:22798528 original size:50 final size:51
Alignment explanation
Indices: 22798436--22798539 Score: 183
Period size: 51 Copynumber: 2.1 Consensus size: 51
22798426 CTCAAGGCTC
22798436 TTTTTCCTTCTTTTTCTTTCTTCGATTCGGCCAAGAACAACATGAGAGCTT
1 TTTTTCCTTCTTTTTCTTTCTTCGATTCGGCCAAGAACAACATGAGAGCTT
* *
22798487 TTTTTCTTTCTTTTTCTTTCTTCTATTCGGCC-AGAACAACATGAGAGCTT
1 TTTTTCCTTCTTTTTCTTTCTTCGATTCGGCCAAGAACAACATGAGAGCTT
22798537 TTT
1 TTT
22798540 ATTTCTTTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 21 0.41
51 30 0.59
ACGTcount: A:0.18, C:0.22, G:0.12, T:0.47
Consensus pattern (51 bp):
TTTTTCCTTCTTTTTCTTTCTTCGATTCGGCCAAGAACAACATGAGAGCTT
Found at i:22805180 original size:39 final size:40
Alignment explanation
Indices: 22805136--22805302 Score: 234
Period size: 40 Copynumber: 4.2 Consensus size: 40
22805126 CCTTCAGAGT
*
22805136 TTAG-CCGGATATAGCT-ACTAGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTAGCACAAATGCCTTCGGGAC
* *
22805175 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
*
22805215 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
* *
22805254 TTAGCCCGGA-AGTAGTCACTAGCACAAATGCCTTTGGGAC
1 TTAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGAC
22805294 TTAGCCCGG
1 TTAGCCCGG
22805303 TTATCAATCC
Statistics
Matches: 117, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
38 1 0.01
39 39 0.33
40 77 0.66
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGAC
Found at i:22805279 original size:79 final size:80
Alignment explanation
Indices: 22805136--22805302 Score: 234
Period size: 79 Copynumber: 2.1 Consensus size: 80
22805126 CCTTCAGAGT
* * *
22805136 TTAG-CCGGATATAGCTACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
1 TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTAGCAC
22805200 AAATGCCTTCGGGAC
66 AAATGCCTTCGGGAC
* *
22805215 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG-AAGTAGTCACTAGC
1 TTAGCCCGGATATAGCT-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTAA-TAGTAACTAGC
*
22805277 ACAAATGCCTTTGGGAC
64 ACAAATGCCTTCGGGAC
22805294 TTAGCCCGG
1 TTAGCCCGG
22805303 TTATCAATCC
Statistics
Matches: 79, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 49 0.62
80 29 0.37
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATATAGCTACTAGCACAAATGCCTTCGGGACTTAGCCCGGTAATAGTAACTAGCAC
AAATGCCTTCGGGAC
Found at i:22806511 original size:51 final size:51
Alignment explanation
Indices: 22806433--22806553 Score: 215
Period size: 51 Copynumber: 2.4 Consensus size: 51
22806423 ATTTCCTCAA
* * *
22806433 AGCTCTTTTTCCTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGTG
1 AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
22806484 AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
1 AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
22806535 AGCTTTTTTTCTTTCTTTT
1 AGCTTTTTTTCTTTCTTTT
22806554 GTTTTTCATC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 67 1.00
ACGTcount: A:0.17, C:0.22, G:0.11, T:0.50
Consensus pattern (51 bp):
AGCTTTTTTTCTTTCTTTTTCTTTCTTCTATTCGGCCAAGAACAACATGAG
Found at i:22809468 original size:47 final size:47
Alignment explanation
Indices: 22809408--22809652 Score: 319
Period size: 47 Copynumber: 5.2 Consensus size: 47
22809398 TTAGGATTTT
* ** * * * * *
22809408 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGACAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
22809455 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
22809502 ATGTGATGAATGTGAACATGCATTTGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22809549 ATGTGATGAATGTGAACATGTATATATGTGATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22809596 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22809643 ATATGATGAA
1 ATGTGATGAA
22809653 CGTGGAAGTG
Statistics
Matches: 178, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:22809484 original size:25 final size:25
Alignment explanation
Indices: 22809456--22809533 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 25
22809446 GAATGACAAA
22809456 TGTGATGAATGTGAACATGCATTTG
1 TGTGATGAATGTGAACATGCATTTG
* * * **
22809481 TGTGCT-AAGGCCG-A-ATGGCAAATG
1 TGTGATGAATG-TGAACAT-GCATTTG
22809505 T--GATGAATGTGAACATGCATTTG
1 TGTGATGAATGTGAACATGCATTTG
22809528 TGTGAT
1 TGTGAT
22809534 AAGACCGAAT
Statistics
Matches: 36, Mismatches: 10, Indels: 14
0.60 0.17 0.23
Matches are distributed among these distances:
22 3 0.08
23 12 0.33
24 12 0.33
25 9 0.25
ACGTcount: A:0.28, C:0.10, G:0.29, T:0.32
Consensus pattern (25 bp):
TGTGATGAATGTGAACATGCATTTG
Found at i:22809685 original size:47 final size:46
Alignment explanation
Indices: 22809408--22809686 Score: 199
Period size: 47 Copynumber: 5.9 Consensus size: 46
22809398 TTAGGATTTT
* ** * * * * * *
22809408 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGACAA
1 ATGTGATGAATGTGAACATGTATATATGTG-GAAAGCTGAATGGCCA
* * * * * * *
22809455 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGTATATATGTG-GAAAGCTGAATGGCCA
* *
22809502 ATGTGATGAATGTGAACATGCAT-T-TGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTG-GA-AAG-CTGAATGGCCA
*
22809549 ATGTGATGAATGTGAACATGTATATATGT-GATAAGGTCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGGA-AAGCT-GAATGGCCA
* * *
22809596 ATGTGATGAATGTGAACATGCATATGTGT-GATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGGA-AA-GCTGAATGGCCA
* * *
22809643 ATATGATGAACGTGGAA-GTGTATATATGTGGGAAAGCTGAATGG
1 ATGTGATGAATGT-GAACATGTATATATGT-GGAAAGCTGAATGG
22809687 TTAATGCGAA
Statistics
Matches: 198, Mismatches: 25, Indels: 18
0.82 0.10 0.07
Matches are distributed among these distances:
45 5 0.03
46 3 0.02
47 178 0.90
48 7 0.04
49 5 0.03
ACGTcount: A:0.33, C:0.10, G:0.30, T:0.28
Consensus pattern (46 bp):
ATGTGATGAATGTGAACATGTATATATGTGGAAAGCTGAATGGCCA
Found at i:22809718 original size:46 final size:46
Alignment explanation
Indices: 22809666--22809756 Score: 112
Period size: 46 Copynumber: 2.0 Consensus size: 46
22809656 GGAAGTGTAT
** * *
22809666 ATATGTGGGAAAGCTGAATGGTTAATGCGA-AATGTGTATGAGATGG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAA-ATGTATGAGATGG
* *
22809712 ATATGTGGTAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATG
1 ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATG
22809757 TGTATATATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.35, C:0.05, G:0.32, T:0.27
Consensus pattern (46 bp):
ATATGTGGGAAAGCCAAATGGCTAATGCGAGAAATGTATGAGATGG
Found at i:22812264 original size:16 final size:17
Alignment explanation
Indices: 22812245--22812288 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
22812235 CCGAAATTTT
22812245 GAAAAGCTGAAATG-CC
1 GAAAAGCTGAAATGTCC
**
22812261 GAAAAGCCAAAATGTCC
1 GAAAAGCTGAAATGTCC
22812278 -AAAAGCTGAAA
1 GAAAAGCTGAAA
22812289 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 21 0.91
17 2 0.09
ACGTcount: A:0.50, C:0.18, G:0.20, T:0.11
Consensus pattern (17 bp):
GAAAAGCTGAAATGTCC
Found at i:22812542 original size:29 final size:29
Alignment explanation
Indices: 22812500--22812559 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
22812490 GTGAGCATGA
*
22812500 ATATAAATGTGATTTGGGCCTAAAGGGCC
1 ATATAAATGTGATTTGGGCATAAAGGGCC
*
22812529 ATATAAATGTGATTTGGGCATAATGGGCC
1 ATATAAATGTGATTTGGGCATAAAGGGCC
22812558 AT
1 AT
22812560 GTGAATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCATAAAGGGCC
Found at i:22816845 original size:16 final size:16
Alignment explanation
Indices: 22816808--22816860 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 16
22816798 CCCAAAATGC
22816808 CGAAATGCCGAAAAG-
1 CGAAATGCCGAAAAGT
* *
22816823 CTAAAATGTCGAAAAGT
1 C-GAAATGCCGAAAAGT
*
22816840 CGAAATGCCAAAAAGT
1 CGAAATGCCGAAAAGT
*
22816856 TGAAA
1 CGAAA
22816861 GTATGGCCAT
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
15 1 0.03
16 28 0.93
17 1 0.03
ACGTcount: A:0.49, C:0.15, G:0.21, T:0.15
Consensus pattern (16 bp):
CGAAATGCCGAAAAGT
Found at i:22816852 original size:24 final size:24
Alignment explanation
Indices: 22816794--22816852 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
22816784 TTAGATCGGA
* *
22816794 AAATCCCAAAATGCCGAAATGCCG
1 AAATGCCAAAATGCCGAAAAGCCG
* * * *
22816818 AAAAGCTAAAATGTCGAAAAGTCG
1 AAATGCCAAAATGCCGAAAAGCCG
22816842 AAATGCCAAAA
1 AAATGCCAAAA
22816853 AGTTGAAAGT
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.49, C:0.20, G:0.17, T:0.14
Consensus pattern (24 bp):
AAATGCCAAAATGCCGAAAAGCCG
Found at i:22817129 original size:29 final size:29
Alignment explanation
Indices: 22817072--22817131 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
22817062 GTGATCATGA
*
22817072 ATATAAATGTGATTTGGGCCTAAATGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
*
22817101 ATATAAATGTGATTTGGGCCTAAGGGGCC
1 ATATAAATGTGATTTGGGCCTAAAGGGCC
22817130 AT
1 AT
22817132 GTGGATATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.30, C:0.13, G:0.27, T:0.30
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAAAGGGCC
Found at i:22819139 original size:41 final size:43
Alignment explanation
Indices: 22819040--22819186 Score: 115
Period size: 41 Copynumber: 3.5 Consensus size: 43
22819030 ATGTGTTCTT
* * * *
22819040 GTGTAAGACCAC-GTTTGGGACGTTGGCATTGATATGTGATTAC
1 GTGTAAGACC-CTGTCTGGGACATTAGCATCGATATGTGATTAC
* * *
22819083 GTGTAAAACCATGTCTGGGACATTAGCATCG-TATTTGATT-C
1 GTGTAAGACCCTGTCTGGGACATTAGCATCGATATGTGATTAC
* * **
22819124 GTGTAAGACCCTGTCTGGGATAGT-GACAT-GATATGTGATGGC
1 GTGTAAGACCCTGTCTGGGACATTAG-CATCGATATGTGATTAC
* **
22819166 ATGTAAGACTATGTCTGGGAC
1 GTGTAAGACCCTGTCTGGGAC
22819187 GTTGGCATTG
Statistics
Matches: 83, Mismatches: 17, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
40 2 0.02
41 31 0.37
42 26 0.31
43 24 0.29
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (43 bp):
GTGTAAGACCCTGTCTGGGACATTAGCATCGATATGTGATTAC
Found at i:22825589 original size:49 final size:49
Alignment explanation
Indices: 22825526--22825649 Score: 212
Period size: 49 Copynumber: 2.5 Consensus size: 49
22825516 TTGGTACGCA
* *
22825526 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACATG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
*
22825575 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
*
22825624 TAGTAGCCTGTACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
22825650 CGTGACCTCA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
Found at i:22828132 original size:15 final size:16
Alignment explanation
Indices: 22828112--22828177 Score: 54
Period size: 15 Copynumber: 4.4 Consensus size: 16
22828102 TAAAGATAAC
22828112 AAGAAAAACC-GAATA
1 AAGAAAAACCAGAATA
*
22828127 AAG-AAATCCA-AGAT-
1 AAGAAAAACCAGA-ATA
22828141 -AGAAAAACCTAGAATA
1 AAGAAAAACC-AGAATA
*
22828157 AAG-AAATCCAGAATA
1 AAGAAAAACCAGAATA
22828172 AAGAAA
1 AAGAAA
22828178 CCCAAGATAC
Statistics
Matches: 40, Mismatches: 3, Indels: 15
0.69 0.05 0.26
Matches are distributed among these distances:
13 2 0.05
14 11 0.28
15 17 0.43
16 8 0.20
17 2 0.05
ACGTcount: A:0.64, C:0.12, G:0.14, T:0.11
Consensus pattern (16 bp):
AAGAAAAACCAGAATA
Found at i:22831215 original size:49 final size:49
Alignment explanation
Indices: 22831143--22831265 Score: 210
Period size: 49 Copynumber: 2.5 Consensus size: 49
22831133 CTAGTACGCA
**
22831143 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCTGGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCAGTACACG
* *
22831192 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACACG
1 TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCAGTACACG
22831241 TAGTAGCCTACACTTAGTACTACAC
1 TAGTAGCCTACACTTAGTACTACAC
22831266 CACGTGACCT
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 69 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCAGTACACG
Found at i:22854501 original size:27 final size:27
Alignment explanation
Indices: 22854470--22854647 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
22854460 TAAATTGTAC
22854470 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22854497 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
** * *
22854523 ATGCACTAAGTGTGCGAACTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22854551 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22854579 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22854606 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22854633 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22854648 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 106 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22854584 original size:82 final size:81
Alignment explanation
Indices: 22854471--22854621 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
22854461 AAATTGTACA
* *
22854471 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
22854535 TGCGAACTGACCATGCG
65 TGCGAACTGACCATGCG
** *
22854552 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
22854617 TGCGA
65 TGCGA
22854622 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAACTGACCATGCG
Found at i:22867412 original size:15 final size:15
Alignment explanation
Indices: 22867394--22867460 Score: 71
Period size: 15 Copynumber: 4.5 Consensus size: 15
22867384 ATCTTGGGTT
22867394 TCTTTATCCTGGATC
1 TCTTTATCCTGGATC
*
22867409 TCTTTATTCTGGATC
1 TCTTTATCCTGGATC
* * *
22867424 TCTTTATTCTGGGTT
1 TCTTTATCCTGGATC
* * *
22867439 TCTCTATCTTGGATT
1 TCTTTATCCTGGATC
22867454 TCTTTAT
1 TCTTTAT
22867461 TCGGTTTTCT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 44 1.00
ACGTcount: A:0.12, C:0.19, G:0.13, T:0.55
Consensus pattern (15 bp):
TCTTTATCCTGGATC
Found at i:22867452 original size:30 final size:30
Alignment explanation
Indices: 22867383--22867470 Score: 90
Period size: 30 Copynumber: 3.0 Consensus size: 30
22867373 CATAATATTG
* * * *
22867383 TATCTTGGGTTTCTTTATCCTGGATCTCTT
1 TATCTTGGATTTCTTTATTCTGGATTTCTC
* *
22867413 TAT-TCTGGATCTCTTTATTCTGGGTTTCTC
1 TATCT-TGGATTTCTTTATTCTGGATTTCTC
*
22867443 TATCTTGGATTTCTTTATTC-GGTTTTCT
1 TATCTTGGATTTCTTTATTCTGGATTTCT
22867471 TATTATCTTT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 8 0.17
30 39 0.81
31 1 0.02
ACGTcount: A:0.10, C:0.18, G:0.16, T:0.56
Consensus pattern (30 bp):
TATCTTGGATTTCTTTATTCTGGATTTCTC
Found at i:22881308 original size:40 final size:40
Alignment explanation
Indices: 22881225--22881447 Score: 166
Period size: 40 Copynumber: 5.6 Consensus size: 40
22881215 TTGAATGCTG
* * * * *
22881225 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAATATA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGA-T-ACTAAA
* * *
22881265 TCCGGACTAAGAT-TCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGACTAAG-TCCCGAAGGCATTCGTGCGAGATACTAAA
** * *
22881305 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * **
22881345 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
** * * *
22881385 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
* * *
22881424 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGACTAAGTCCCGAAGGCATT
22881448 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.22
40 114 0.71
41 10 0.06
42 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:22881363 original size:80 final size:79
Alignment explanation
Indices: 22881225--22881449 Score: 236
Period size: 80 Copynumber: 2.8 Consensus size: 79
22881215 TTGAATGCTG
* * * * * * * * * *
22881225 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-TCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
22881289 TGTGCGAGATACTAAA
64 TGTGCGAGATACTAAA
* * * *
22881305 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTT
* **
22881370 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * *
22881385 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
22881450 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 36 0.30
80 82 0.67
81 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTTG
TGCGAGATACTAAA
Found at i:22881429 original size:39 final size:40
Alignment explanation
Indices: 22881279--22881447 Score: 232
Period size: 40 Copynumber: 4.2 Consensus size: 40
22881269 GACTAAGATT
* * *
22881279 CGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
*
22881319 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
** *
22881359 CGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
* * * *
22881399 CGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
22881438 CGAAGGCATT
1 CGAAGGCATT
22881448 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
39 34 0.29
40 84 0.71
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
Found at i:22881467 original size:79 final size:80
Alignment explanation
Indices: 22881300--22881482 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
22881290 GTGCGAGATA
* * *
22881300 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
22881365 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
22881380 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
22881444 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* * *
22881459 CTATATCC-GATTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
22881483 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 13 0.15
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:22889229 original size:39 final size:40
Alignment explanation
Indices: 22889025--22889247 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
22889015 TTGAATGCTG
* * * * * *
22889025 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
22889065 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
22889105 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
22889145 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
22889185 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
22889224 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22889248 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:22889267 original size:79 final size:80
Alignment explanation
Indices: 22889100--22889282 Score: 217
Period size: 79 Copynumber: 2.3 Consensus size: 80
22889090 GTGCGAGATA
* * *
22889100 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
22889165 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
22889180 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
22889244 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* * *
22889259 CTATATCC-GATTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
22889283 TACGTGATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 13 0.15
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:22895076 original size:25 final size:25
Alignment explanation
Indices: 22895048--22895130 Score: 60
Period size: 25 Copynumber: 3.2 Consensus size: 25
22895038 GATTTCCTTC
22895048 CCTTATAGAACTTATCAATTCCATG
1 CCTTATAGAACTTATCAATTCCATG
* ** *
22895073 CCTTAGCATGGTCTTA-CATGATTTCCTTG
1 CCTTA-TA-GAACTTATCA--A-TTCCATG
* *
22895102 CCTTATAGAACTCATCAATTCCATT
1 CCTTATAGAACTTATCAATTCCATG
22895127 CCTT
1 CCTT
22895131 GGCATGGTCT
Statistics
Matches: 42, Mismatches: 10, Indels: 12
0.66 0.16 0.19
Matches are distributed among these distances:
25 14 0.33
26 4 0.10
27 9 0.21
28 4 0.10
29 11 0.26
ACGTcount: A:0.25, C:0.27, G:0.10, T:0.39
Consensus pattern (25 bp):
CCTTATAGAACTTATCAATTCCATG
Found at i:22895089 original size:54 final size:54
Alignment explanation
Indices: 22894946--22895154 Score: 303
Period size: 54 Copynumber: 3.9 Consensus size: 54
22894936 TTTCCTTTTT
*
22894946 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATG-TTATCCTTGCCTTATA
1 GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATT-TCCTTGCCTTATA
* * *
22895000 GTAACTCATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTCCCTTATA
1 G-AACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * *
22895055 GAACTTATCAATTCCATGCCTTAGCATGGTCTTACATGATTTCCTTGCCTTATA
1 GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
* * *
22895109 GAACTCATCAATTCCATTCCTTGGCATGGTCTTACATGATATCCTT
1 GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTT
22895155 ATCTTACCAA
Statistics
Matches: 139, Mismatches: 14, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
54 90 0.65
55 47 0.34
56 2 0.01
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.37
Consensus pattern (54 bp):
GAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGATTTCCTTGCCTTATA
Found at i:22895103 original size:29 final size:28
Alignment explanation
Indices: 22895024--22895106 Score: 75
Period size: 29 Copynumber: 3.0 Consensus size: 28
22895014 CCATGTCTTG
*
22895024 ACATGGTCTTACATGATTTCCTTCCCTT
1 ACATGGTCTTACATGATTTCCTTGCCTT
* ** *
22895052 ATA-GAACTTATCA--A-TTCCATGCCTT
1 ACATGGTCTTA-CATGATTTCCTTGCCTT
22895077 AGCATGGTCTTACATGATTTCCTTGCCTT
1 A-CATGGTCTTACATGATTTCCTTGCCTT
22895106 A
1 A
22895107 TAGAACTCAT
Statistics
Matches: 40, Mismatches: 9, Indels: 11
0.67 0.15 0.18
Matches are distributed among these distances:
25 10 0.25
26 4 0.10
27 10 0.25
28 5 0.12
29 11 0.28
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.40
Consensus pattern (28 bp):
ACATGGTCTTACATGATTTCCTTGCCTT
Found at i:22897768 original size:21 final size:23
Alignment explanation
Indices: 22897727--22897768 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
22897717 ATAATAAACC
*
22897727 AAATAAAATATTATGAAAAATAA
1 AAATAAAATATTATAAAAAATAA
22897750 AAATAAAAT-TT-TAAAAAAT
1 AAATAAAATATTATAAAAAAT
22897769 TAGAACATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (23 bp):
AAATAAAATATTATAAAAAATAA
Found at i:22898900 original size:17 final size:17
Alignment explanation
Indices: 22898878--22898932 Score: 85
Period size: 17 Copynumber: 3.3 Consensus size: 17
22898868 AAATACACTC
22898878 TCTCTTTGATCTCCTAT
1 TCTCTTTGATCTCCTAT
22898895 TCTCTTTGATCTCCTAT
1 TCTCTTTGATCTCCTAT
* *
22898912 TCTCTTTGTTCT-TTAT
1 TCTCTTTGATCTCCTAT
22898928 TCTCT
1 TCTCT
22898933 GTCTTTTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
16 8 0.22
17 28 0.78
ACGTcount: A:0.09, C:0.27, G:0.05, T:0.58
Consensus pattern (17 bp):
TCTCTTTGATCTCCTAT
Found at i:22901065 original size:43 final size:43
Alignment explanation
Indices: 22901017--22901124 Score: 146
Period size: 43 Copynumber: 2.5 Consensus size: 43
22901007 AGATGTAATT
* *
22901017 ACATGTAAGACCATGTCTGGGACATTGGCATC-ATTATATGATT
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGA-TATACGATA
* *
22901060 TCATGTAAGACCATGTCTGGTACATTGGCATCGATATACGATA
1 ACATGTAAGACCATGTCTGGGACATTGGCATCGATATACGATA
* *
22901103 ACATGTAAGATCATATCTGGGA
1 ACATGTAAGACCATGTCTGGGA
22901125 TATGGCACTG
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 55 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (43 bp):
ACATGTAAGACCATGTCTGGGACATTGGCATCGATATACGATA
Found at i:22904583 original size:39 final size:39
Alignment explanation
Indices: 22904539--22904711 Score: 233
Period size: 39 Copynumber: 4.4 Consensus size: 39
22904529 ATTATATTAT
*
22904539 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
**
22904578 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
*
22904617 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
** * * *
22904656 CAGCACGAAGCCTGC-GGACCCTAAGTCCGGATATAATTC
1 CAGCACGAAGCCTGCGGGACTTTAA-CCCGGATACATTTC
22904695 CAGCAC-ATAGCCTGCGG
1 CAGCACGA-AGCCTGCGG
22904712 ACCCTAAGTC
Statistics
Matches: 121, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
38 7 0.06
39 113 0.93
40 1 0.01
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.19
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAACCCGGATACATTTC
Found at i:22906846 original size:31 final size:31
Alignment explanation
Indices: 22906808--22906886 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
22906798 TTTAATGGTT
22906808 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* *
22906839 ACTGGGCCAAAACCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
22906870 ATTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
22906887 ACTGTAAATG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:22906957 original size:42 final size:42
Alignment explanation
Indices: 22906910--22907001 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
22906900 TGGCCCTTAG
* ** * *
22906910 GCCCATTTCAATATCACATGTAATGTCAGTGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
22906952 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
22906994 GCCCATTT
1 GCCCATTT
22907002 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:22907217 original size:26 final size:26
Alignment explanation
Indices: 22907146--22907268 Score: 196
Period size: 26 Copynumber: 4.8 Consensus size: 26
22907136 CCTCTTTAAT
*
22907146 AACTGGGGCA-AAGCCCTTTTCGATA
1 AACTGGGGCATAAGCCCTTTTCAATA
22907171 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
**
22907196 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCAATA
22907222 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCAATA
*
22907248 AACTGGGACATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
22907269 GCACTTCCTC
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 34 0.37
26 57 0.63
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCAATA
Found at i:22907974 original size:27 final size:27
Alignment explanation
Indices: 22907943--22908011 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 27
22907933 TACGGAACAT
*
22907943 AAGGGCATATTC-GTCATTTTACCATAC
1 AAGGGCAT-TTCGGTCACTTTACCATAC
* *
22907970 AAGGGTATTTCGGTCACTTTACCCTAC
1 AAGGGCATTTCGGTCACTTTACCATAC
*
22907997 AGGGGC-TTTACGGTC
1 AAGGGCATTT-CGGTC
22908012 TTTTTACCTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.23, C:0.23, G:0.22, T:0.32
Consensus pattern (27 bp):
AAGGGCATTTCGGTCACTTTACCATAC
Found at i:22908103 original size:27 final size:27
Alignment explanation
Indices: 22908053--22908257 Score: 132
Period size: 27 Copynumber: 7.6 Consensus size: 27
22908043 CATCCTACAG
* * *
22908053 GGGTGTTTTGGTAAATCTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACTAA
* ** *
22908080 GGGTATTTTAGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACTAA
* * * **
22908107 TGGTATTTCT-ATAATTTTTAGAATGTCAA
1 GGGTATTT-TGGTAA-TTTTACAAACT-AA
* ** *
22908136 GGGTATTTCT-ATAATTTTGTAAA-TCAG
1 GGGTATTT-TGGTAATTTTACAAACT-AA
* *
22908163 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACTAA
* * *
22908190 GGGTATTTCGGTAATTTCACAAAC-CA
1 GGGTATTTTGGTAATTTTACAAACTAA
22908216 GTGGTATTTTGGTAATTTTACAAACT-A
1 G-GGTATTTTGGTAATTTTACAAACTAA
22908243 GGGTATTTTGGTAAT
1 GGGTATTTTGGTAAT
22908258 GCTACCCTAT
Statistics
Matches: 141, Mismatches: 30, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
26 17 0.12
27 95 0.67
28 14 0.10
29 15 0.11
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACTAA
Found at i:22908254 original size:26 final size:26
Alignment explanation
Indices: 22908163--22908257 Score: 136
Period size: 27 Copynumber: 3.6 Consensus size: 26
22908153 TGTAAATCAG
*
22908163 GGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTTGGTAATTTTACAAACT-A
* * *
22908190 GGGTATTTCGGTAATTTCACAAACCA
1 GGGTATTTTGGTAATTTTACAAACTA
22908216 GTGGTATTTTGGTAATTTTACAAACTA
1 G-GGTATTTTGGTAATTTTACAAACTA
22908243 GGGTATTTTGGTAAT
1 GGGTATTTTGGTAAT
22908258 GCTACCCTAT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
26 16 0.27
27 44 0.73
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACTA
Found at i:22908327 original size:27 final size:27
Alignment explanation
Indices: 22908295--22908377 Score: 114
Period size: 27 Copynumber: 3.1 Consensus size: 27
22908285 TTCACAATTA
*
22908295 AGGGTAAAAC-GATAATTTTGTAAATCG
1 AGGGTAAAACAG-TAATTCTGTAAATCG
*
22908322 AGGGTAAAACAGTAATTCTGTAAATCA
1 AGGGTAAAACAGTAATTCTGTAAATCG
* *
22908349 AAGGTAAAACAGTAATTCTATAAATCG
1 AGGGTAAAACAGTAATTCTGTAAATCG
22908376 AG
1 AG
22908378 CGTACTTTGG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.45, C:0.10, G:0.19, T:0.27
Consensus pattern (27 bp):
AGGGTAAAACAGTAATTCTGTAAATCG
Found at i:22917492 original size:56 final size:56
Alignment explanation
Indices: 22917406--22917525 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
22917396 ACAAGGGATG
22917406 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
22917462 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAGTGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
22917518 ATGGGCAA
1 ATGGGCAA
22917526 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.44, C:0.09, G:0.24, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:22917628 original size:10 final size:10
Alignment explanation
Indices: 22917595--22917627 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
22917585 ATGCATGACC
22917595 AAAAAAAGA-
1 AAAAAAAGAG
22917604 AAAAAAAGAG
1 AAAAAAAGAG
*
22917614 AAAAGAAGAG
1 AAAAAAAGAG
22917624 AAAA
1 AAAA
22917628 GCTCTCATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 9 0.41
10 13 0.59
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAG
Found at i:22918903 original size:40 final size:40
Alignment explanation
Indices: 22918665--22918889 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
22918655 TCGAATGATG
* * * *
22918665 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
22918705 TCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22918745 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22918784 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
22918824 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22918865 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22918890 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 119 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22924098 original size:40 final size:40
Alignment explanation
Indices: 22923858--22924080 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
22923848 TCCTCGTTCA
* * * * *
22923858 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
22923897 AACGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22923937 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22923977 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22924017 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
22924057 AAGGCCTTCGGGGCTTAACCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22924081 ATTTGTATCT
Statistics
Matches: 171, Mismatches: 12, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
39 33 0.19
40 138 0.81
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22924104 original size:40 final size:40
Alignment explanation
Indices: 22923856--22924160 Score: 339
Period size: 40 Copynumber: 7.7 Consensus size: 40
22923846 GCTCCTCGTT
* * * * *
22923856 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
22923896 C-AACGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
22923935 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
*
22923975 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * *
22924015 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
* * * * **
22924055 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCATA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCA
** * * * *
22924095 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCA
*
22924136 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
22924161 CAGCATTCAA
Statistics
Matches: 233, Mismatches: 26, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
39 38 0.16
40 182 0.78
41 13 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
Found at i:22931389 original size:40 final size:40
Alignment explanation
Indices: 22931297--22931599 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 40
22931287 TCCTCGTTCA
* * * * *
22931297 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
22931336 AACGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22931376 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
22931416 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
22931456 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
22931496 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGTACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
22931536 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
22931576 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22931600 CAGCATTCAA
Statistics
Matches: 233, Mismatches: 25, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
39 38 0.16
40 184 0.79
41 11 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:22936053 original size:56 final size:56
Alignment explanation
Indices: 22935967--22936142 Score: 334
Period size: 56 Copynumber: 3.1 Consensus size: 56
22935957 ACAAGGGATA
*
22935967 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
*
22936023 ATGGGCAAAACATGCCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
22936079 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
22936135 ATGGGCAA
1 ATGGGCAA
22936143 TAAACTAATA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
56 117 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:22937517 original size:40 final size:40
Alignment explanation
Indices: 22937286--22937510 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
22937276 TCGAATGATG
* * * *
22937286 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22937326 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22937366 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22937405 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22937445 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
22937486 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22937511 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 33 0.21
40 116 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22937517 original size:80 final size:78
Alignment explanation
Indices: 22937293--22937543 Score: 249
Period size: 79 Copynumber: 3.2 Consensus size: 78
22937283 ATGTCCGGGC
* * * * *
22937293 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATTTGTGCG
* *
22937356 AGATACTAATTCCGGGC
64 AG-TACTAAATCC-GGT
* * * *
22937373 TAAG-CCTGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCAAAGGCATTTGTGCGA
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
22937436 GTTACTAAATCCGAGT
65 G-TACTAAATCCG-GT
* **
22937452 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
22937517 TAGCTATATCCGGT
66 TA-CTAAATCCGGT
* *
22937531 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
22937544 TACGTGATTT
Statistics
Matches: 142, Mismatches: 22, Indels: 15
0.79 0.12 0.08
Matches are distributed among these distances:
78 3 0.02
79 69 0.49
80 68 0.48
81 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (78 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TACTAAATCCGGT
Found at i:22942363 original size:16 final size:16
Alignment explanation
Indices: 22942323--22942390 Score: 75
Period size: 16 Copynumber: 4.2 Consensus size: 16
22942313 GGTTCACTGG
22942323 AATGGAATA-AGGCTGT
1 AATGGAATAGA-GCTGT
** *
22942339 AATAAAATAGAGTTGT
1 AATGGAATAGAGCTGT
*
22942355 AATGGAATAAAGCTGT
1 AATGGAATAGAGCTGT
*
22942371 AGTGGAATAGAGCTGT
1 AATGGAATAGAGCTGT
22942387 AATG
1 AATG
22942391 AGTAATTCAA
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
16 40 0.98
17 1 0.02
ACGTcount: A:0.41, C:0.04, G:0.28, T:0.26
Consensus pattern (16 bp):
AATGGAATAGAGCTGT
Found at i:22942364 original size:32 final size:32
Alignment explanation
Indices: 22942323--22942390 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
22942313 GGTTCACTGG
* *
22942323 AATGGAATAAGGCTGTAATAAAATAGAGTTGT
1 AATGGAATAAAGCTGTAATAAAATAGAGCTGT
* **
22942355 AATGGAATAAAGCTGTAGTGGAATAGAGCTGT
1 AATGGAATAAAGCTGTAATAAAATAGAGCTGT
22942387 AATG
1 AATG
22942391 AGTAATTCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.41, C:0.04, G:0.28, T:0.26
Consensus pattern (32 bp):
AATGGAATAAAGCTGTAATAAAATAGAGCTGT
Found at i:22942427 original size:46 final size:44
Alignment explanation
Indices: 22942368--22942463 Score: 122
Period size: 44 Copynumber: 2.1 Consensus size: 44
22942358 GGAATAAAGC
* * *
22942368 TGTAGTGGAATAGAGCTGTAATGAGTAATTCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAACTATAAT-AGT-ATT-AATGTGTTTGGTTGAA
*
22942414 TGTAATGGAATAGAACTATAATAGTATTATTGTGTTTGGTTGAA
1 TGTAATGGAATAGAACTATAATAGTATTAATGTGTTTGGTTGAA
22942458 TGTAAT
1 TGTAAT
22942464 AGATATGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 2 0.04
44 21 0.47
45 3 0.07
46 19 0.42
ACGTcount: A:0.32, C:0.03, G:0.25, T:0.40
Consensus pattern (44 bp):
TGTAATGGAATAGAACTATAATAGTATTAATGTGTTTGGTTGAA
Found at i:22942625 original size:26 final size:26
Alignment explanation
Indices: 22942596--22942647 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
22942586 AACAAATAAT
* *
22942596 TTAACCATATTTTAATATA-ATTATTA
1 TTAAACATACTTTAATA-ACATTATTA
*
22942622 TTAAATATACTTTAATAACATTATTA
1 TTAAACATACTTTAATAACATTATTA
22942648 ATATAATTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (26 bp):
TTAAACATACTTTAATAACATTATTA
Found at i:22948247 original size:47 final size:46
Alignment explanation
Indices: 22948153--22948424 Score: 158
Period size: 47 Copynumber: 5.7 Consensus size: 46
22948143 GATTTCTTGT
***
22948153 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTAGAGATGA
* *
22948201 GTGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTAGA-GATGA
** * * ** *
22948248 CAGCCAGTGTAAGACGTGTTTGGGACATGCATCG-GTTA-AGA-GTC
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTAGAGATG-A
** * * * *
22948292 GTGTTAGTGTAAGACATGT-TCGGGACATGCATCAGCACATATATACGA
1 GTGCCAGTGTAAGACATGTCT-GGGACATGCATC-G-ACCTAGAGATGA
* * * * *
22948340 GAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTAGA-GATGA
** *
22948389 -TAGCTTGTGTGAGACCATGTCTGGGACATGGCATCG
1 GT-GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
22948425 GCAACTTATC
Statistics
Matches: 175, Mismatches: 36, Indels: 25
0.74 0.15 0.11
Matches are distributed among these distances:
43 2 0.01
44 28 0.16
45 2 0.01
46 10 0.06
47 49 0.28
48 30 0.17
49 48 0.27
50 6 0.03
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.25
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTAGAGATGA
Found at i:22948318 original size:91 final size:95
Alignment explanation
Indices: 22948155--22948376 Score: 242
Period size: 91 Copynumber: 2.4 Consensus size: 95
22948145 TTTCTTGTGT
22948155 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTGTAAGACATGT
22948220 CTAGGACATGCATCGACCTCGATGATGACA
66 CTAGGACATGCATCGACCTCGATGATGACA
* * * **
22948250 GCCAGTGTAAGA-CGTGTTTGGGACAT-GCATCGGT-TA-AGA-GTCGTGTTAGTGTAAGACATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATG-AGTGCCAGTGTAAGACATG
* * ** * *
22948310 T-TCGGGACATGCATCAGCACATATAT-ACGAGA
65 TCT-AGGACATGCATC-G-ACCTCGATGATGACA
* *
22948342 GCTAGTATAAGACCATGTCTGGGACATGGCATCGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
22948377 CCTCGATGAT
Statistics
Matches: 106, Mismatches: 15, Indels: 13
0.79 0.11 0.10
Matches are distributed among these distances:
90 2 0.02
91 31 0.29
92 17 0.16
93 25 0.24
94 19 0.18
95 12 0.11
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.24
Consensus pattern (95 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTAGAGATGAGTGCCAGTGTAAGACATGT
CTAGGACATGCATCGACCTCGATGATGACA
Found at i:22950798 original size:56 final size:55
Alignment explanation
Indices: 22950728--22950854 Score: 191
Period size: 56 Copynumber: 2.3 Consensus size: 55
22950718 ACCTGGAAAC
22950728 ATATGTGATCCCGATATATATGTGCGAGTAAGACCACATTTTATACATTGCCATCG
1 ATATGTGAT-CCGATATATATGTGCGAGTAAGACCACATTTTATACATTGCCATCG
* * * *
22950784 ATATGTGACTCCGATATATGTGTGCGAGTAAGACCACATTTTATACGTTGGCATTG
1 ATATGTGA-TCCGATATATATGTGCGAGTAAGACCACATTTTATACATTGCCATCG
22950840 ATATGTGATTCCGAT
1 ATATGTGA-TCCGAT
22950855 GTGTTTACGA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
56 64 0.98
57 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.34
Consensus pattern (55 bp):
ATATGTGATCCGATATATATGTGCGAGTAAGACCACATTTTATACATTGCCATCG
Found at i:22957361 original size:56 final size:55
Alignment explanation
Indices: 22957291--22957419 Score: 170
Period size: 56 Copynumber: 2.3 Consensus size: 55
22957281 ACCTGGAAGC
*
22957291 ATATGTGATCCCGATATATATGTGCAAGTAAGACCACATTTTATACATT-GCCATCG
1 ATATGTGAT-CCGATATATATGTGCAAGTAAGACCACATTTTATACATTGGCAAT-G
* * * *
22957347 ATATGTGACTCCGATATATGTGTGCGAGTAAGACCACGTTTTATACGTTGGCAATG
1 ATATGTGA-TCCGATATATATGTGCAAGTAAGACCACATTTTATACATTGGCAATG
22957403 ATATGTGATTCCGATAT
1 ATATGTGA-TCCGATAT
22957420 GTTTACGAGT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
56 60 0.92
57 5 0.08
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (55 bp):
ATATGTGATCCGATATATATGTGCAAGTAAGACCACATTTTATACATTGGCAATG
Found at i:22973118 original size:29 final size:29
Alignment explanation
Indices: 22973058--22973147 Score: 119
Period size: 29 Copynumber: 3.1 Consensus size: 29
22973048 CACATACCTA
*
22973058 TATATGGCCCACTAGGCCC-AATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
22973086 TATATGGACCATTATGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* * *
22973115 TATATGGCCCATCAGGCCCAATTCACGTT
1 TATATGGCCCATTAGGCCCAAATCACATT
22973144 TATA
1 TATA
22973148 GTCATGCTCA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
28 16 0.30
29 37 0.70
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:22986885 original size:4 final size:4
Alignment explanation
Indices: 22986876--22986902 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
22986866 TGTAATAATG
22986876 TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTA
22986903 GATGACTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:22990366 original size:32 final size:29
Alignment explanation
Indices: 22990269--22990372 Score: 100
Period size: 31 Copynumber: 3.4 Consensus size: 29
22990259 GATTGAATCA
* * * *
22990269 AAATTAATATTTCATATATACATTTAAATC
1 AAATTAAAATTT-ATATATAAAATTATATC
*
22990299 ACAATCAAAATTTTATATATAAAATTATATC
1 A-AATTAAAA-TTTATATATAAAATTATATC
*
22990330 AAATTAAAATTTATATATCAAAATTATATATT
1 AAATTAAAATTTATATAT-AAAA-T-TATATC
22990362 AAATTAAAATT
1 AAATTAAAATT
22990373 AATGTACAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
29 9 0.15
30 12 0.19
31 22 0.35
32 19 0.31
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (29 bp):
AAATTAAAATTTATATATAAAATTATATC
Found at i:22991140 original size:14 final size:14
Alignment explanation
Indices: 22991113--22991150 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 14
22991103 TTGTACTTGA
22991113 TTTAGCTTTCTTTTTT
1 TTTA-CTTT-TTTTTT
22991129 TTT-CTTTTTTTTT
1 TTTACTTTTTTTTT
22991142 TTTACTTTT
1 TTTACTTTT
22991151 ATTTGCTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 9 0.43
14 9 0.43
16 3 0.14
ACGTcount: A:0.05, C:0.11, G:0.03, T:0.82
Consensus pattern (14 bp):
TTTACTTTTTTTTT
Found at i:22996756 original size:12 final size:12
Alignment explanation
Indices: 22996727--22996761 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
22996717 TATACTTCGT
*
22996727 AATATTTTTTTA
1 AATATTTTTATA
22996739 AA-ATTTTTATA
1 AATATTTTTATA
22996750 AATATTTTTATA
1 AATATTTTTATA
22996762 TTTTTTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
AATATTTTTATA
Found at i:22996889 original size:121 final size:122
Alignment explanation
Indices: 22996741--22996961 Score: 390
Period size: 121 Copynumber: 1.8 Consensus size: 122
22996731 TTTTTTTAAA
22996741 ATTTTTATAAATATTTTTATATTTTTTAATTTATTTTTTAGTGTGACATATAATATAAATAATAC
1 ATTTTTATAAATATTTTTATATTTTTTAATTTATTTTTTAGTGTGACATATAATATAAATAATAC
*
22996806 CATATCAGCATAAATTGTATATGGAATGTTGCATATAATACAAGTATACTTTGTGAT
66 CATATCAGCATAAATTGTACATGGAATGTTGCATATAATACAAGTATACTTTGTGAT
* * *
22996863 ATTTTTTTAAA-ATTTTTATATTTTTTAATTTATTTTTTGGTGTGACATATAATATAAATAATAT
1 ATTTTTATAAATATTTTTATATTTTTTAATTTATTTTTTAGTGTGACATATAATATAAATAATAC
*
22996927 CATATCAGTATAAATTGTACATGGAATGTTGCATA
66 CATATCAGCATAAATTGTACATGGAATGTTGCATA
22996962 AGTTGTGGGC
Statistics
Matches: 94, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
121 84 0.89
122 10 0.11
ACGTcount: A:0.36, C:0.06, G:0.10, T:0.48
Consensus pattern (122 bp):
ATTTTTATAAATATTTTTATATTTTTTAATTTATTTTTTAGTGTGACATATAATATAAATAATAC
CATATCAGCATAAATTGTACATGGAATGTTGCATATAATACAAGTATACTTTGTGAT
Found at i:22998833 original size:87 final size:86
Alignment explanation
Indices: 22998706--22998950 Score: 420
Period size: 87 Copynumber: 2.8 Consensus size: 86
22998696 CGAAAAAACA
* *
22998706 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCAAGGCTTTTA
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTTA
22998771 GCGGCGTTTGTGGGAAAAGCG
66 GCGGCGTTTGTGGGAAAAGCG
*
22998792 CCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTT
1 CCGCTAAAGGTCAAGGC-TTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGC-TTT
*
22998857 TAGCGGCGTTTGTGGTAAAAGCG
64 TAGCGGCGTTTGTGGGAAAAGCG
22998880 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGT-AAAGCGCCGCTAAACGTCAAGGCTTTT
1 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTG-GTAAAAGCGCCGCTAAACGTCAAGGCTTTT
22998944 AGCGGCG
65 AGCGGCG
22998951 CTTTTTTTAC
Statistics
Matches: 151, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
86 27 0.18
87 81 0.54
88 43 0.28
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (86 bp):
CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAACGTCAAGGCTTTTA
GCGGCGTTTGTGGGAAAAGCG
Found at i:22998973 original size:43 final size:43
Alignment explanation
Indices: 22998706--22998950 Score: 411
Period size: 43 Copynumber: 5.7 Consensus size: 43
22998696 CGAAAAAACA
* *
22998706 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
1 CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCG
* *
22998749 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGCG
1 CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCG
22998792 CCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGCG
1 CCGCTAAACGTCAAGGC-TTTTAGCGGCGTTTGTGGTAAAAGCG
22998836 CCGCTAAACGTCAAGGCTTTTTAGCGGCGTTTGTGGTAAAAGCG
1 CCGCTAAACGTCAAGGC-TTTTAGCGGCGTTTGTGGTAAAAGCG
*
22998880 CCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGCGT-AAAGCG
1 CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTG-GTAAAAGCG
22998923 CCGCTAAACGTCAAGGCTTTTAGCGGCG
1 CCGCTAAACGTCAAGGCTTTTAGCGGCG
22998951 CTTTTTTTAC
Statistics
Matches: 196, Mismatches: 4, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
43 109 0.56
44 87 0.44
ACGTcount: A:0.22, C:0.21, G:0.32, T:0.25
Consensus pattern (43 bp):
CCGCTAAACGTCAAGGCTTTTAGCGGCGTTTGTGGTAAAAGCG
Found at i:22999060 original size:31 final size:31
Alignment explanation
Indices: 22999025--22999105 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 31
22999015 CTTCCTGCAT
* *
22999025 TAAAATCCAACCAAATACAACAAATATAATA
1 TAAAATCCAACCAAAAACAACAAATATAACA
* * *
22999056 TAAAATGCAGCCAAAAACAACAAATTTAACA
1 TAAAATCCAACCAAAAACAACAAATATAACA
*
22999087 TAAAAAATACAACCAAAAA
1 T--AAAATCCAACCAAAAA
22999106 TATTAATTCT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
31 27 0.66
33 14 0.34
ACGTcount: A:0.63, C:0.19, G:0.02, T:0.16
Consensus pattern (31 bp):
TAAAATCCAACCAAAAACAACAAATATAACA
Found at i:22999375 original size:21 final size:21
Alignment explanation
Indices: 22999351--22999396 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
22999341 GCTCGTGCCT
*
22999351 CTGCCTCTCTCGCTGCAGCCG
1 CTGCCTCCCTCGCTGCAGCCG
* * *
22999372 CTGCCTCCCTCTCTGCTGCCT
1 CTGCCTCCCTCGCTGCAGCCG
22999393 CTGC
1 CTGC
22999397 TCTAAGTTGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.50, G:0.20, T:0.28
Consensus pattern (21 bp):
CTGCCTCCCTCGCTGCAGCCG
Found at i:23005622 original size:37 final size:37
Alignment explanation
Indices: 23005562--23005639 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
23005552 TATTACGAAG
* * *
23005562 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGC
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGC
* *
23005599 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGC
23005636 TCTT
1 TCTT
23005640 CAGAGCTCAG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.33, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGC
Found at i:23005917 original size:47 final size:48
Alignment explanation
Indices: 23005757--23005981 Score: 382
Period size: 47 Copynumber: 4.7 Consensus size: 48
23005747 GCCCTTCGGG
*
23005757 ACTTATCACATTCATCCCATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
23005807 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATAC
*
23005856 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
*
23005903 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
23005950 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
23005982 ATACTATCAT
Statistics
Matches: 173, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
47 87 0.50
49 82 0.47
50 4 0.02
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (48 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATAC
Found at i:23005934 original size:96 final size:95
Alignment explanation
Indices: 23005757--23005981 Score: 380
Period size: 96 Copynumber: 2.3 Consensus size: 95
23005747 GCCCTTCGGG
*
23005757 ACTTATCACATTCATCCCATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATC
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCACA-ATATATACACTTTCACATTCATC
23005822 ACATCGGCCATTAGGCCCTATCACATATATATAC
64 ACATCGGCCATTAGGCCCTATCAC--ATATATAC
*
23005856 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC-ATATATACACTTTCACATTCATCAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
*
23005920 ATCGGCCATTAGGCCTTATCACATATATAC
66 ATCGGCCATTAGGCCCTATCACATATATAC
23005950 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
23005982 ATACTATCAT
Statistics
Matches: 123, Mismatches: 3, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
94 40 0.33
96 46 0.37
98 33 0.27
99 4 0.03
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (95 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACAATATATACACTTTCACATTCATCAC
ATCGGCCATTAGGCCCTATCACATATATAC
Found at i:23009538 original size:40 final size:40
Alignment explanation
Indices: 23009508--23009927 Score: 444
Period size: 40 Copynumber: 10.5 Consensus size: 40
23009498 AGCATGATTA
* * *
23009508 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* ** *
23009548 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
23009588 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
23009628 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
23009668 CTCTTCGGAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* *
23009708 CTCCTCGGGACTTAGCCCGGATATATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
* * * *
23009748 CTCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* * * * *
23009789 C-CTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAATG
* *
23009829 C-CTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATG
1 CTCTTCGGGACTTAGCCCGGATA-TA-TCA-CTAGCACGAATG
* * *
23009868 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAATG
23009908 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
23009928 CATCATTCGA
Statistics
Matches: 327, Mismatches: 43, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
38 3 0.01
39 30 0.09
40 272 0.83
41 22 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATG
Found at i:23010753 original size:37 final size:37
Alignment explanation
Indices: 23010692--23010770 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
23010682 TTATTACGAA
* * * *
23010692 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
23010729 GTCTTACCCAGATAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
23010766 GTCTT
1 GTCTT
23010771 CAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:23010999 original size:47 final size:47
Alignment explanation
Indices: 23010888--23011110 Score: 383
Period size: 47 Copynumber: 4.7 Consensus size: 47
23010878 GCCCTTCGGG
* *
23010888 ACTTATCACATTCATCCCATCGGCCATTAGGCCCTATCACATATATATAT
1 ACTT-TCACATTCATCACATCGGCCATTAGGCCCTATCAC--ATATATAC
23010938 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
*
23010985 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
*
23011032 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
23011079 ACTTTCACATTCATCACATCGGCCATTAGGCC
1 ACTTTCACATTCATCACATCGGCCATTAGGCC
23011111 ATACTATCAT
Statistics
Matches: 170, Mismatches: 3, Indels: 3
0.97 0.02 0.02
Matches are distributed among these distances:
47 132 0.78
49 34 0.20
50 4 0.02
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATAC
Found at i:23014424 original size:9 final size:9
Alignment explanation
Indices: 23014410--23014671 Score: 179
Period size: 9 Copynumber: 28.6 Consensus size: 9
23014400 TATTTAAGTA
23014410 TTATGTAAG
1 TTATGTAAG
*
23014419 TTATGTAAT
1 TTATGTAAG
*
23014428 TTATGATATG
1 TTATG-TAAG
* * *
23014438 ATATAT-AT
1 TTATGTAAG
*
23014446 TTATGTAAA
1 TTATGTAAG
* *
23014455 TTATAT-AT
1 TTATGTAAG
*
23014463 TTATCTAAG
1 TTATGTAAG
*
23014472 TTATATAAG
1 TTATGTAAG
23014481 TTATGTAAG
1 TTATGTAAG
*
23014490 TTATGTAAA
1 TTATGTAAG
*
23014499 TTATGATATAAAA
1 TTATG---T-AAG
*
23014512 TATATTTAAG
1 T-TATGTAAG
*
23014522 TATTATGTAAT
1 --TTATGTAAG
23014533 TTATGTAAG
1 TTATGTAAG
* *
23014542 TTATAT-AT
1 TTATGTAAG
*
23014550 TTATCTAAG
1 TTATGTAAG
*
23014559 TTATATAAG
1 TTATGTAAG
*
23014568 TTATATAAG
1 TTATGTAAG
*
23014577 TTATGTATG
1 TTATGTAAG
*
23014586 TTATATAAG
1 TTATGTAAG
23014595 TTATGTAAG
1 TTATGTAAG
*
23014604 TTATATAAG
1 TTATGTAAG
23014613 TTATGTAAG
1 TTATGTAAG
*
23014622 TTATATAAG
1 TTATGTAAG
*
23014631 TTATATAAG
1 TTATGTAAG
*
23014640 TTATGTACG
1 TTATGTAAG
*
23014649 TTTTGTAAG
1 TTATGTAAG
* *
23014658 TTATATAAA
1 TTATGTAAG
23014667 TTATG
1 TTATG
23014672 ATATCAAATA
Statistics
Matches: 199, Mismatches: 43, Indels: 22
0.75 0.16 0.08
Matches are distributed among these distances:
8 16 0.08
9 160 0.80
10 7 0.04
11 7 0.04
12 2 0.01
13 4 0.02
14 3 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (9 bp):
TTATGTAAG
Done.