Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 71 of 259
Found at i:23014489 original size:18 final size:18
Alignment explanation
Indices: 23014410--23014671 Score: 215
Period size: 18 Copynumber: 14.3 Consensus size: 18
23014400 TATTTAAGTA
* *
23014410 TTATGTAAGTTATGTAAT
1 TTATGTAAGTTATATAAG
* * *
23014428 TTATGATATGATATAT-AT
1 TTATG-TAAGTTATATAAG
* *
23014446 TTATGTAAATTATAT-AT
1 TTATGTAAGTTATATAAG
*
23014463 TTATCTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* *
23014481 TTATGTAAGTTATGTAAA
1 TTATGTAAGTTATATAAG
* *
23014499 TTATGATATAAAATATATTTAAG
1 TTATG---T-AAGT-TATATAAG
* *
23014522 TATTATGTAATTTATGTAAG
1 --TTATGTAAGTTATATAAG
* * *
23014542 TTATAT-ATTTATCTAAG
1 TTATGTAAGTTATATAAG
*
23014559 TTATATAAGTTATATAAG
1 TTATGTAAGTTATATAAG
*
23014577 TTATGTATGTTATATAAG
1 TTATGTAAGTTATATAAG
23014595 TTATGTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
23014613 TTATGTAAGTTATATAAG
1 TTATGTAAGTTATATAAG
* * *
23014631 TTATATAAGTTATGTACG
1 TTATGTAAGTTATATAAG
* *
23014649 TTTTGTAAGTTATATAAA
1 TTATGTAAGTTATATAAG
23014667 TTATG
1 TTATG
23014672 ATATCAAATA
Statistics
Matches: 201, Mismatches: 33, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
17 38 0.19
18 130 0.65
19 7 0.03
20 7 0.03
21 4 0.02
22 4 0.02
23 6 0.03
25 5 0.02
ACGTcount: A:0.38, C:0.01, G:0.13, T:0.48
Consensus pattern (18 bp):
TTATGTAAGTTATATAAG
Found at i:23014520 original size:114 final size:114
Alignment explanation
Indices: 23014386--23014617 Score: 306
Period size: 114 Copynumber: 2.0 Consensus size: 114
23014376 ACTAGTTATG
* * * *
23014386 TATGATATGATATATATTTAAGTATTATGTAAGTTATGTAATTTATGATATGATATAT-ATTTAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTAT-ATAT-ATATATAAGTTAT
* * *
23014450 GTAAATTATAT-ATTTATCTAAGTTATATAAGTTATGTAAGTTATGTAAAT
64 ATAAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATATAAAT
* * *
23014500 TATGATATAAAATATATTTAAGTATTATGTAATTTATGTAAGTTATATATTTATCTAAGTTATAT
1 TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
* * * *
23014565 AAGTTATATAAGTTATGTATGTTATATAAGTTATGTAAGTTATATAAGT
66 AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATATAAAT
23014614 TATG
1 TATG
23014618 TAAGTTATAT
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
112 4 0.04
113 18 0.18
114 80 0.78
ACGTcount: A:0.39, C:0.01, G:0.12, T:0.48
Consensus pattern (114 bp):
TATGATATAAAATATATTTAAGTATTATGTAAGTTATGTAAGTTATATATATATATAAGTTATAT
AAATTATATAAGTTATCTAAGTTATATAAGTTATGTAAGTTATATAAAT
Found at i:23014796 original size:15 final size:15
Alignment explanation
Indices: 23014776--23014831 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
23014766 AAGTAGCGGG
23014776 ATTAAATAATATTTA
1 ATTAAATAATATTTA
23014791 ATTAAATAATATTT-
1 ATTAAATAATATTTA
23014805 A-TAAA-AATTATTTTA
1 ATTAAATAA-TA-TTTA
*
23014820 ATTAAGTAATAT
1 ATTAAATAATAT
23014832 ACATGTCGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
12 2 0.06
13 6 0.17
14 4 0.11
15 16 0.46
16 5 0.14
17 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (15 bp):
ATTAAATAATATTTA
Found at i:23018870 original size:40 final size:40
Alignment explanation
Indices: 23018826--23019057 Score: 315
Period size: 40 Copynumber: 5.8 Consensus size: 40
23018816 ATAACCACAA
*
23018826 GCACAAATGCCCTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
23018866 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
23018906 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* * * *
23018946 GCACAATTGCCTTCGGGTCTTATCCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* * * *
23018986 GCACAAATGCCTTCGGGTCTTGGCCTGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
23019026 GCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
23019058 CATTCAAATG
Statistics
Matches: 167, Mismatches: 22, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 4 0.02
40 156 0.93
41 7 0.04
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:23018929 original size:80 final size:80
Alignment explanation
Indices: 23018826--23019057 Score: 358
Period size: 80 Copynumber: 2.9 Consensus size: 80
23018816 ATAACCACAA
* * * *
23018826 GCACAAATGCCCTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCACAATTGCCTTCGGGTCTTAGC
*
23018890 CCGGATATATCAACTC
65 CCGGATATAGCAACTC
*
23018906 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCC
*
23018971 CGGGTATAGCAACTC
66 CGGATATAGCAACTC
* * *
23018986 GCACAAATGCCTTCGGGTCTTGGCCTGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCC
23019051 CGGATAT
66 CGGATAT
23019058 CATTCAAATG
Statistics
Matches: 139, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
80 135 0.97
81 4 0.03
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (80 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCC
CGGATATAGCAACTC
Found at i:23019030 original size:120 final size:120
Alignment explanation
Indices: 23018797--23019056 Score: 353
Period size: 120 Copynumber: 2.2 Consensus size: 120
23018787 ACCCAAGTTT
* * * *
23018797 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATATC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
* *
23018861 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
* * * * * * *
23018916 CTTCGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTATCCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
* * *
23018981 AACTCGCACAAATGCCTTCGGGTCTTGGCCTGGATAAAATC-ACTAGCACAATTGC
66 AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACTAGCACAAATGC
23019036 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
23019057 TCATTCAAAT
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
119 10 0.08
120 108 0.89
121 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAAATGCCCTCGGGTCTTAGCCCGGATATAGC
AACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
Found at i:23029510 original size:27 final size:27
Alignment explanation
Indices: 23029480--23029657 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23029470 ATATTGAGTC
* * * *
23029480 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23029507 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23029534 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23029562 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23029589 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23029616 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23029643 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23029658 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23029619 original size:82 final size:81
Alignment explanation
Indices: 23029501--23029656 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23029491 TGCTATATAA
* *
23029501 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23029566 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23029583 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23029647 CACTTAGTGC
65 CACTTAGTGC
23029657 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23032270 original size:10 final size:11
Alignment explanation
Indices: 23032249--23032299 Score: 57
Period size: 12 Copynumber: 4.3 Consensus size: 11
23032239 ACTAAACCAC
23032249 TTTTCATATATA
1 TTTT-ATATATA
23032261 TATTTATATATA
1 T-TTTATATATA
*
23032273 TTTTAAAATAATA
1 TTTT-ATAT-ATA
23032286 TTTTATATATA
1 TTTTATATATA
23032297 TTT
1 TTT
23032300 ATCTTATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
11 9 0.26
12 15 0.44
13 10 0.29
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATATATA
Found at i:23032308 original size:15 final size:15
Alignment explanation
Indices: 23032288--23032319 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
23032278 AAATAATATT
*
23032288 TTATATATATTTATC
1 TTATATACATTTATC
23032303 TTATATACATTTATC
1 TTATATACATTTATC
23032318 TT
1 TT
23032320 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.59
Consensus pattern (15 bp):
TTATATACATTTATC
Found at i:23033388 original size:41 final size:41
Alignment explanation
Indices: 23033331--23033549 Score: 359
Period size: 41 Copynumber: 5.4 Consensus size: 41
23033321 GTTATGAGAT
* *
23033331 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTTTCGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
* *
23033372 TTTTAGCGGCGTTTTACCTAATGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
*
23033413 TTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
*
23033454 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
* *
23033495 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
23033535 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
23033550 TTACTAAAAC
Statistics
Matches: 168, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
40 16 0.10
41 152 0.90
ACGTcount: A:0.17, C:0.25, G:0.25, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTCTGGC
Found at i:23033457 original size:82 final size:81
Alignment explanation
Indices: 23033331--23033590 Score: 362
Period size: 82 Copynumber: 3.2 Consensus size: 81
23033321 GTTATGAGAT
* * *
23033331 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTTTCGCTTTTAGCGGCGTTTTACCTAATGC
1 TTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCT-GCTTTTAGCGGCGTTTTACCTAAAGC
23033396 GCCGCTAATGCTCTGGC
65 GCCGCTAATGCTCTGGC
**
23033413 TTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCTGGCTTTTAGCGGCGTTTTACAGAAAGC
1 TTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCT-GCTTTTAGCGGCGTTTTACCTAAAGC
23033478 GCCGCTAATGCTCTGGC
65 GCCGCTAATGCTCTGGC
* * * *
23033495 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGTTTTTAGCGGCGTTTTTTA-CTAAAA
1 TTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCTGCTTTTAGCGGCG--TTTTACCTAAAG
** *
23033559 CGCCGCTGTTGCTCT-GT
64 CGCCGCTAATGCTCTGGC
23033576 TTTTAGCGGCATTTT
1 TTTTAGCGGCATTTT
23033591 TTTAGAACGC
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
81 27 0.17
82 128 0.80
83 5 0.03
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (81 bp):
TTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCTGCTTTTAGCGGCGTTTTACCTAAAGCG
CCGCTAATGCTCTGGC
Found at i:23033563 original size:41 final size:40
Alignment explanation
Indices: 23033331--23033613 Score: 295
Period size: 41 Copynumber: 7.0 Consensus size: 40
23033321 GTTATGAGAT
* * * *
23033331 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTTTCGC
1 TTTTAGCGGCGTTTTA-CTAAAACGCCGCTAATGCTCTGGC
**
23033372 TTTTAGCGGCGTTTTACCTAATGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTA-CTAAAACGCCGCTAATGCTCTGGC
* * *
23033413 TTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTA-CTAAAACGCCGCTAATGCTCTGGC
23033454 TTTTAGCGGCGTTTTAC-AGAAAGCGCCGCTAATGCTCTGGC
1 TTTTAGCGGCGTTTTACTA-AAA-CGCCGCTAATGCTCTGGC
*
23033495 TTTTAGCGGCGTTTTAC-AGAAAGCGCCGCTAATGCTCT-GT
1 TTTTAGCGGCGTTTTACTA-AAA-CGCCGCTAATGCTCTGGC
** *
23033535 TTTTAGCGGCGTTTTTTACTAAAACGCCGCTGTTGCTCT-GT
1 TTTTAGCGGCG--TTTTACTAAAACGCCGCTAATGCTCTGGC
* ** * *
23033576 TTTTAGCGGCATTTTTTTAGAACGCCGCTATTGCTCTG
1 TTTTAGCGGCGTTTTACTAAAACGCCGCTAATGCTCTG
23033614 AATTTTAAAA
Statistics
Matches: 219, Mismatches: 17, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
39 23 0.11
40 15 0.07
41 171 0.78
42 9 0.04
43 1 0.00
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACTAAAACGCCGCTAATGCTCTGGC
Found at i:23033563 original size:123 final size:122
Alignment explanation
Indices: 23033331--23033590 Score: 353
Period size: 123 Copynumber: 2.1 Consensus size: 122
23033321 GTTATGAGAT
* * ** *
23033331 TTTTAGCGGCGTTTTACCGAAAGCGCCGCTAATGCTTTCGCTTTTAGCGGCGTTTTACCTAATGC
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTCGCTTTTAGCGGCGTTTTACAGAAAGC
*
23033396 GCCGCTAATGCTCTGGCTTTTAGCGGCATTTTACCGAAAGCGCCGCTAATGCTCTGGC
66 GCCGCTAATGCTCTGGCTTTTAGCGGCATTTTACCGAAAACGCCGCTAATGCTCT-GC
*
23033454 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTGGCTTTTAGCGGCGTTTTACAGAAAGC
1 TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTCGCTTTTAGCGGCGTTTTACAGAAAGC
* * * ** *
23033519 GCCGCTAATGCTCT-GTTTTTAGCGGCGTTTTTTA-CTAAAACGCCGCTGTTGCTCTGT
66 GCCGCTAATGCTCTGGCTTTTAGCGGC--ATTTTACCGAAAACGCCGCTAATGCTCTGC
*
23033576 TTTTAGCGGCATTTT
1 TTTTAGCGGCGTTTT
23033591 TTTAGAACGC
Statistics
Matches: 121, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
122 26 0.21
123 90 0.74
124 5 0.04
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.34
Consensus pattern (122 bp):
TTTTAGCGGCGTTTTACAGAAAGCGCCGCTAATGCTCTCGCTTTTAGCGGCGTTTTACAGAAAGC
GCCGCTAATGCTCTGGCTTTTAGCGGCATTTTACCGAAAACGCCGCTAATGCTCTGC
Found at i:23033925 original size:19 final size:18
Alignment explanation
Indices: 23033893--23033931 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
23033883 TAAATAATTC
*
23033893 AAAAAAATTTTAAAAATA
1 AAAAAAATTGTAAAAATA
*
23033911 AAAAAAATATGTAAATATA
1 AAAAAAAT-TGTAAAAATA
23033930 AA
1 AA
23033932 TTTAAAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAAAATTGTAAAAATA
Found at i:23036449 original size:39 final size:39
Alignment explanation
Indices: 23036406--23036483 Score: 138
Period size: 39 Copynumber: 2.0 Consensus size: 39
23036396 AATTAATCTT
*
23036406 TATTACTTAGTATATAAGGAAATTAAAAGTGGATGGAGA
1 TATTACTTAATATATAAGGAAATTAAAAGTGGATGGAGA
*
23036445 TATTACTTAATATATAAGGAAATTGAAAGTGGATGGAGA
1 TATTACTTAATATATAAGGAAATTAAAAGTGGATGGAGA
23036484 GATAATTTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.31
Consensus pattern (39 bp):
TATTACTTAATATATAAGGAAATTAAAAGTGGATGGAGA
Found at i:23039416 original size:28 final size:28
Alignment explanation
Indices: 23039376--23039450 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
23039366 GAAAAGGGAA
*
23039376 GTCCACTAAGGACTATCTTAGGTGAAAT
1 GTCCACTAAGGACTATCTTAGATGAAAT
* * * *
23039404 GTCCACCAAGGACTATATTATATGGAAT
1 GTCCACTAAGGACTATCTTAGATGAAAT
23039432 GTCCACTAAGGACTATCTT
1 GTCCACTAAGGACTATCTT
23039451 GACAACTGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (28 bp):
GTCCACTAAGGACTATCTTAGATGAAAT
Found at i:23053196 original size:168 final size:168
Alignment explanation
Indices: 23052917--23053219 Score: 473
Period size: 168 Copynumber: 1.8 Consensus size: 168
23052907 ATATTTATAA
* * *
23052917 AAAATTTAATATTTAATTAAATTGTAAAATATGTTTATTTTCCTTTGGTTTTGACACATAAATTA
1 AAAATTTAATATTTAATTAAATTATAAAATATATTTATTTTCCTTTGGTTGTGACACATAAATTA
*
23052982 AGAATAAATAAATAAATTTATATATTATAAAATAAATTACCAATATATTGATATTATC-TTATAT
66 AGAATAAATAAATAAATTTATACATTATAAAATAAATTACCAATATATTGATATTATCTTTATAT
23053046 ATATAATATTAATATCACACATTTAATTTTTGTTAATT
131 ATATAATATTAATATCACACATTTAATTTTTGTTAATT
* * * *
23053084 AAAATTTGATGTTTAATTTAATTATAAAATATATTTATTTTCTTTTGAGTTGTGACACATAAATT
1 AAAATTTAATATTTAATTAAATTATAAAATATATTTATTTTCCTTTG-GTTGTGACACATAAATT
* * * * *
23053149 AAGAATAAATAAGTAAATTTATACATTATAGATTAGATTATCAATATATTGATATTATCTTTATA
65 AAGAATAAATAAATAAATTTATACATTATAAAATAAATTACCAATATATTGATATTATCTTTATA
23053214 TATATA
130 TATATA
23053220 CACATTTTTA
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
167 41 0.34
168 69 0.57
169 11 0.09
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.46
Consensus pattern (168 bp):
AAAATTTAATATTTAATTAAATTATAAAATATATTTATTTTCCTTTGGTTGTGACACATAAATTA
AGAATAAATAAATAAATTTATACATTATAAAATAAATTACCAATATATTGATATTATCTTTATAT
ATATAATATTAATATCACACATTTAATTTTTGTTAATT
Found at i:23054727 original size:42 final size:42
Alignment explanation
Indices: 23054651--23054730 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
23054641 AACTATGGGG
* *
23054651 ACTTCTACCTATACATCCTGTGCGATATATCGATACAATTCC
1 ACTTCTACCTATACATCCTGTGAGATATACCGATACAATTCC
* * *
23054693 ACTTCTACCTATACATCTTGTGAGTTGTACCGATACAA
1 ACTTCTACCTATACATCCTGTGAGATATACCGATACAA
23054731 GTCTATATGC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.29, C:0.26, G:0.11, T:0.34
Consensus pattern (42 bp):
ACTTCTACCTATACATCCTGTGAGATATACCGATACAATTCC
Found at i:23057337 original size:34 final size:34
Alignment explanation
Indices: 23057299--23057367 Score: 113
Period size: 34 Copynumber: 2.0 Consensus size: 34
23057289 ACATTAATTG
23057299 AATACATAGCCTATA-CTCAAACATGCTATTTGTC
1 AATACATAGCCTATATC-CAAACATGCTATTTGTC
*
23057333 AATACATAGCTTATATCCAAACATGCTATTTGTC
1 AATACATAGCCTATATCCAAACATGCTATTTGTC
23057367 A
1 A
23057368 CAAGTATTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
34 32 0.97
35 1 0.03
ACGTcount: A:0.36, C:0.22, G:0.09, T:0.33
Consensus pattern (34 bp):
AATACATAGCCTATATCCAAACATGCTATTTGTC
Found at i:23057339 original size:17 final size:16
Alignment explanation
Indices: 23057315--23057367 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 16
23057305 TAGCCTATAC
23057315 TCAAACATGCTATTTG
1 TCAAACATGCTATTTG
*
23057331 TCAATACATAGCTTATAT-
1 TCAA-ACAT-GC-TATTTG
*
23057349 CCAAACATGCTATTTG
1 TCAAACATGCTATTTG
23057365 TCA
1 TCA
23057368 CAAGTATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
15 4 0.14
16 8 0.28
17 8 0.28
18 5 0.17
19 4 0.14
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (16 bp):
TCAAACATGCTATTTG
Found at i:23057570 original size:12 final size:11
Alignment explanation
Indices: 23057553--23057653 Score: 51
Period size: 11 Copynumber: 8.9 Consensus size: 11
23057543 AATAAACGAG
23057553 AAAAATGAAAAT
1 AAAAAT-AAAAT
*
23057565 AAAAATAAAAG
1 AAAAATAAAAT
***
23057576 AAGTTTAAAATT
1 AAAAATAAAA-T
*
23057588 AAAAACTAAATT
1 AAAAA-TAAAAT
*
23057600 AAAATTAAAAT
1 AAAAATAAAAT
* *
23057611 TAAAATAAAGT
1 AAAAATAAAAT
* * *
23057622 AAAAAGAGATT
1 AAAAATAAAAT
*
23057633 GTAAAATAAAAT
1 -AAAAATAAAAT
23057645 -AAAATAAAA
1 AAAAATAAAA
23057654 CCACAATGTA
Statistics
Matches: 64, Mismatches: 22, Indels: 8
0.68 0.23 0.09
Matches are distributed among these distances:
10 9 0.14
11 31 0.48
12 20 0.31
13 4 0.06
ACGTcount: A:0.69, C:0.01, G:0.07, T:0.23
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:23057597 original size:24 final size:23
Alignment explanation
Indices: 23057554--23057619 Score: 64
Period size: 24 Copynumber: 2.9 Consensus size: 23
23057544 ATAAACGAGA
*
23057554 AAAATGAAAA-TAAAAATAAAAG
1 AAAATTAAAATTAAAAATAAAAG
** **
23057576 AAGTTTAAAATTAAAAACTAAATT
1 AAAATTAAAATTAAAAA-TAAAAG
23057600 AAAATTAAAATT-AAAATAAA
1 AAAATTAAAATTAAAAATAAA
23057620 GTAAAAAGAG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
22 11 0.31
23 10 0.29
24 14 0.40
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.24
Consensus pattern (23 bp):
AAAATTAAAATTAAAAATAAAAG
Found at i:23057663 original size:28 final size:29
Alignment explanation
Indices: 23057605--23057664 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
23057595 AAATTAAAAT
* * * *
23057605 TAAAATTAAAATAAAGTAAAAAGAGATTG
1 TAAAATTAAAATAAAATAAAAACACAATG
*
23057634 TAAAA-TAAAATAAAATAAAACCACAATG
1 TAAAATTAAAATAAAATAAAAACACAATG
23057662 TAA
1 TAA
23057665 CAAAGCTCTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 21 0.81
29 5 0.19
ACGTcount: A:0.65, C:0.05, G:0.08, T:0.22
Consensus pattern (29 bp):
TAAAATTAAAATAAAATAAAAACACAATG
Found at i:23070297 original size:40 final size:40
Alignment explanation
Indices: 23070196--23070410 Score: 232
Period size: 39 Copynumber: 5.5 Consensus size: 40
23070186 TATTCGAATG
* * * *
23070196 ATATCCGGGCTAAGTCCTGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
23070236 ATAT-CGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
23070275 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-GACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * * *
23070314 ATATCCGGTCTAAG-TCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
23070353 ATATCCGGGCTAAGACCCGAAGGC--TTGTGCGAGTG-TT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
23070390 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGA-CCCGAAG
23070411 ATACTTGGGT
Statistics
Matches: 149, Mismatches: 20, Indels: 16
0.81 0.11 0.09
Matches are distributed among these distances:
35 1 0.01
36 13 0.09
37 6 0.04
38 28 0.19
39 60 0.40
40 41 0.28
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:23072679 original size:22 final size:23
Alignment explanation
Indices: 23072654--23072696 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
23072644 CAAAGCGAGG
23072654 AGCTCAGTAT-GGAG-AAAAGAAA
1 AGCTCA-TATGGGAGCAAAAGAAA
*
23072676 AGCTGATATGGGAGCAAAAGA
1 AGCTCATATGGGAGCAAAAGA
23072697 GTTTCGTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 3 0.17
22 9 0.50
23 6 0.33
ACGTcount: A:0.47, C:0.09, G:0.30, T:0.14
Consensus pattern (23 bp):
AGCTCATATGGGAGCAAAAGAAA
Found at i:23078340 original size:40 final size:40
Alignment explanation
Indices: 23078280--23078463 Score: 230
Period size: 40 Copynumber: 4.6 Consensus size: 40
23078270 TATTCGAATG
*
23078280 ATATCCGGGCTAAG-TCCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
* * *
23078320 ATATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
23078360 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* *
23078400 ATATCCGGTCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
23078440 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
23078464 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 120 0.97
41 3 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:23078413 original size:80 final size:80
Alignment explanation
Indices: 23078280--23078463 Score: 264
Period size: 80 Copynumber: 2.3 Consensus size: 80
23078270 TATTCGAATG
* * *
23078280 ATATCCGGGCTAAGTCCCGAAGGCTTTTATGCTAGTGACTATATCCGGACTAAGAT-CCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAG-TCCCGAAGGC
* *
23078344 ATTTGTGCGAGTTG-CT
65 ATTTATGCGAG-TGACC
* *
23078360 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGTCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
*
23078425 TTTATGCTAGTGACC
66 TTTATGCGAGTGACC
23078440 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
23078464 CTTGTGCGAG
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
79 3 0.03
80 91 0.97
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATGCTAGCGACTATATCCGGACTAAGTCCCGAAGGCA
TTTATGCGAGTGACC
Found at i:23087962 original size:47 final size:47
Alignment explanation
Indices: 23087892--23088191 Score: 447
Period size: 47 Copynumber: 6.4 Consensus size: 47
23087882 CCCTTCGGGA
* * * * * *
23087892 CTTATCACATTTATACGCTTTCACATCCATCACATTGGCTATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23087939 CTTATCACATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23087986 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23088033 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
23088080 CTTATCACATATACACACCTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23088127 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23088174 CTTATCACATATACACAC
1 CTTATCACATATATACAC
23088192 CTTGTACATC
Statistics
Matches: 228, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 228 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23088056 original size:94 final size:94
Alignment explanation
Indices: 23087892--23088191 Score: 501
Period size: 94 Copynumber: 3.2 Consensus size: 94
23087882 CCCTTCGGGA
* * * * *
23087892 CTTATCACATTTATACGCTTTCACATCCATCACATTGGCTATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
* * *
23087957 CTTCACATCCATCACATCGGCCATTAGGT
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
23087986 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
23088051 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
23088080 CTTATCACATATACACACCTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
23088145 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
23088174 CTTATCACATATACACAC
1 CTTATCACATATACACAC
23088192 CTTGTACATC
Statistics
Matches: 195, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
94 195 1.00
ACGTcount: A:0.28, C:0.31, G:0.08, T:0.32
Consensus pattern (94 bp):
CTTATCACATATACACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:23091803 original size:37 final size:37
Alignment explanation
Indices: 23091744--23091852 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
23091734 AGCTCAGATG
* *
23091744 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
23091781 AAATCTCCACACGTAGTCATCGGGTCTTACCCGAACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
23091818 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
23091853 ATATATTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:23092125 original size:50 final size:50
Alignment explanation
Indices: 23092002--23092486 Score: 788
Period size: 50 Copynumber: 9.8 Consensus size: 50
23091992 CATCTCCTAC
* * *
23092002 ATATTTCACACTAGCCATTCGGCTTTACAACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
23092050 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* * *
23092100 ATATTTCACATTAACCATTCGGCTTTACCTCATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
23092148 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
*
23092198 ATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATATAT
* *
23092250 ATATTTCACATTAGCCATTAGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
23092298 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
23092348 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
* *
23092398 ATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
23092446 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATAT
23092487 ATTTATCTCG
Statistics
Matches: 411, Mismatches: 18, Indels: 16
0.92 0.04 0.04
Matches are distributed among these distances:
48 177 0.43
50 186 0.45
52 48 0.12
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (50 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:23092152 original size:98 final size:98
Alignment explanation
Indices: 23092002--23092486 Score: 803
Period size: 98 Copynumber: 4.9 Consensus size: 98
23091992 CATCTCCTAC
* * *
23092002 ATATTTCACACTAGCCATTCGGCTTTACAACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
23092067 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
23092100 ATATTTCACATTAACCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
23092165 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTCATATAT
* *
23092198 ATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCACATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTA
* *
23092263 GCCATTAGGCTTTACCACATATACATATCTC--ATAC
62 GCCATTCGGCTTTACCACATATACATATCTCATATAT
*
23092298 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAGC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
23092363 CATTCGGCTTTACCACATATACATATCTCATATAT
64 CATTCGGCTTTACCACATATACATATCTCATATAT
*
23092398 ATATTTCATATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
23092463 TTCGGCTTTACCACATATACATAT
66 TTCGGCTTTACCACATATACATAT
23092487 ATTTATCTCG
Statistics
Matches: 365, Mismatches: 16, Indels: 12
0.93 0.04 0.03
Matches are distributed among these distances:
98 227 0.62
100 92 0.25
102 46 0.13
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.37
Consensus pattern (98 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATATAT
Found at i:23097029 original size:21 final size:20
Alignment explanation
Indices: 23097005--23097043 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
23096995 GAATATTTTT
23097005 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAG-TTATGA
23097026 ATGTTTGATGATAGTTAT
1 ATGTTTGATGATAGTTAT
23097044 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (20 bp):
ATGTTTGATGATAGTTATGA
Found at i:23097053 original size:21 final size:21
Alignment explanation
Indices: 23097005--23097051 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
23096995 GAATATTTTT
*
23097005 ATGTTTGATGATAGATTATGA
1 ATGTTTGATGATAGATTATCA
23097026 ATGTTTGATGATAG-TTATACA
1 ATGTTTGATGATAGATTAT-CA
23097047 A-GTTT
1 ATGTTT
23097052 TGTTAAGTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.45
Consensus pattern (21 bp):
ATGTTTGATGATAGATTATCA
Found at i:23123066 original size:61 final size:61
Alignment explanation
Indices: 23122971--23123094 Score: 248
Period size: 61 Copynumber: 2.0 Consensus size: 61
23122961 CGTACGCCTA
23122971 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
1 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
23123032 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
1 TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
23123093 TG
1 TG
23123095 AGTTTTTTAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 63 1.00
ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46
Consensus pattern (61 bp):
TGTGCAAGAAAGGGGATTGTTTTGTTTCTTGGTTCTTACCTATATTTTTCAAGAATTAATT
Found at i:23125719 original size:80 final size:79
Alignment explanation
Indices: 23125635--23125806 Score: 220
Period size: 79 Copynumber: 2.2 Consensus size: 79
23125625 GGACTAAGAT
*
23125635 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACT
1 CCGAAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACT
* *
23125699 AAATCCGGGTTAAGTC
64 AAAACCGGGCTAAGTC
* * * * * * *
23125715 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
*
23125780 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
23125794 CCGAAGGCATTTG
1 CCGAAGGCATTTG
23125807 AACGAGGAGC
Statistics
Matches: 79, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
79 38 0.48
80 38 0.48
81 3 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAA
AACCGGGCTAAGTC
Found at i:23125786 original size:39 final size:39
Alignment explanation
Indices: 23125582--23125804 Score: 209
Period size: 40 Copynumber: 5.6 Consensus size: 39
23125572 TTGAATGCTG
* * * * *
23125582 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
23125622 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
23125661 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* *
23125702 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
23125742 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
23125781 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23125805 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 40 0.25
40 103 0.66
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:23125824 original size:79 final size:80
Alignment explanation
Indices: 23125662--23125839 Score: 191
Period size: 79 Copynumber: 2.2 Consensus size: 80
23125652 AGATACAAAT
* * * *
23125662 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** * *
23125727 GTGCGAGTTATTAAA
66 GAACGAGTGACTAAA
* * * * *
23125742 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
23125806 GAACGAG-GAGCTATA
66 GAACGAGTGA-CTAAA
*
23125821 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
23125840 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
78 15 0.19
79 48 0.59
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGTGACTAAA
Found at i:23130207 original size:5 final size:5
Alignment explanation
Indices: 23130197--23130233 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
23130187 TCGAGCCAAA
23130197 AATTT AATTT AATTT AATATT -A-TT AATTT AATTT AAT
1 AATTT AATTT AATTT AAT-TT AATTT AATTT AATTT AAT
23130234 ATTATTACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
3 2 0.07
4 1 0.03
5 24 0.83
6 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (5 bp):
AATTT
Found at i:23130224 original size:19 final size:19
Alignment explanation
Indices: 23130200--23130240 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
23130190 AGCCAAAAAT
23130200 TTAATTTAATTTAATATTA
1 TTAATTTAATTTAATATTA
23130219 TTAATTTAATTTAATATTA
1 TTAATTTAATTTAATATTA
23130238 TTA
1 TTA
23130241 CATGGTCCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTAATTTAATTTAATATTA
Found at i:23135484 original size:14 final size:15
Alignment explanation
Indices: 23135460--23135489 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
23135450 GGATATCAAA
23135460 ACATGAATTAAGAAC
1 ACATGAATTAAGAAC
23135475 ACAT-AATTAAGAAC
1 ACATGAATTAAGAAC
23135489 A
1 A
23135490 AGTTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.57, C:0.13, G:0.10, T:0.20
Consensus pattern (15 bp):
ACATGAATTAAGAAC
Found at i:23137864 original size:41 final size:41
Alignment explanation
Indices: 23137813--23137898 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
23137803 ACCTATAGAA
23137813 ATCTCTTTCTTAATTAAAACCCCTAGGGAAGCAGTAAATCG
1 ATCTCTTTCTTAATTAAAACCCCTAGGGAAGCAGTAAATCG
23137854 ATCTCTTTCTTAATTAAAACCCCTAGGGAAGCAGTAAATCG
1 ATCTCTTTCTTAATTAAAACCCCTAGGGAAGCAGTAAATCG
23137895 ATCT
1 ATCT
23137899 ATAGACTCCC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (41 bp):
ATCTCTTTCTTAATTAAAACCCCTAGGGAAGCAGTAAATCG
Found at i:23140939 original size:6 final size:6
Alignment explanation
Indices: 23140930--23140962 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
23140920 AAGAAAATTG
*
23140930 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
23140963 ATAGGAGGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:23148521 original size:26 final size:26
Alignment explanation
Indices: 23148485--23148546 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
23148475 ACATCTTTTC
*
23148485 TCAAAATTTTA-CTAGGGGTAAGA-TCG
1 TCAAAATTTTATC-AGGGGTAA-ATTCA
23148511 TCAAAATTTTATCAGGGGTAAATTCA
1 TCAAAATTTTATCAGGGGTAAATTCA
23148537 TCAAAATTTT
1 TCAAAATTTT
23148547 TTTGGTCGTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
25 1 0.03
26 31 0.94
27 1 0.03
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTATCAGGGGTAAATTCA
Found at i:23154562 original size:25 final size:25
Alignment explanation
Indices: 23154534--23154628 Score: 129
Period size: 25 Copynumber: 3.8 Consensus size: 25
23154524 CTCTTTTAAT
23154534 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGATA
*
23154559 AACTGGGGCAAAGCCC-TTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTTGA-TA
* ** *
23154584 AACTAGGGCAAAGCCCTTTCCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATA
23154609 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23154629 GCACTTCCTC
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
24 5 0.08
25 53 0.88
26 2 0.03
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGATA
Found at i:23154611 original size:50 final size:50
Alignment explanation
Indices: 23154534--23154628 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
23154524 CTCTTTTAAT
* **
23154534 AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAAAGCCCTTTTCAGTA
1 AACTAGGGCAAAGCCCTTTCCGATAAACTGGGGCAAAGCCCTTTTCAGTA
*
23154584 AACTAGGGCAAAGCCCTTTCCGGTAAACTGGGGCAAAGCCCTTTT
1 AACTAGGGCAAAGCCCTTTCCGATAAACTGGGGCAAAGCCCTTTT
23154629 GCACTTCCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (50 bp):
AACTAGGGCAAAGCCCTTTCCGATAAACTGGGGCAAAGCCCTTTTCAGTA
Found at i:23155950 original size:21 final size:22
Alignment explanation
Indices: 23155926--23155966 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
23155916 AAGAAAGAAA
23155926 AAGAAAA-GACTA-ATCCTAAAG
1 AAGAAAACGAC-ACATCCTAAAG
23155947 AAGAAAACGACACATCCTAA
1 AAGAAAACGACACATCCTAA
23155967 GTCCCTAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.56, C:0.20, G:0.12, T:0.12
Consensus pattern (22 bp):
AAGAAAACGACACATCCTAAAG
Found at i:23161382 original size:25 final size:25
Alignment explanation
Indices: 23161354--23161448 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
23161344 CTCTTTTAAT
*
23161354 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
23161379 AACTGGGGCAAAGCCCTTTTAGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
23161404 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
23161429 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23161449 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 67 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:23161522 original size:20 final size:21
Alignment explanation
Indices: 23161497--23161543 Score: 78
Period size: 20 Copynumber: 2.3 Consensus size: 21
23161487 AATGAATACT
*
23161497 TCATGTGCATATCATA-CATA
1 TCATGTGCATATCATATCAAA
23161517 TCATGTGCATATCATATCAAA
1 TCATGTGCATATCATATCAAA
23161538 TCATGT
1 TCATGT
23161544 ATATCAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (21 bp):
TCATGTGCATATCATATCAAA
Found at i:23164760 original size:30 final size:30
Alignment explanation
Indices: 23164677--23164763 Score: 102
Period size: 30 Copynumber: 2.9 Consensus size: 30
23164667 CCTACAGGGG
* * ** *
23164677 ACACACGGCCGAGTCACACGGTCATGTGTC
1 ACACACGGCTGAGACACACGCCCGTGTGTC
*
23164707 ACACACGGTTGAGACACACGCCCGTGTGTC
1 ACACACGGCTGAGACACACGCCCGTGTGTC
* *
23164737 ACACATGGCTGAGACGCACGCCCGTGT
1 ACACACGGCTGAGACACACGCCCGTGT
23164764 CTTAGGTCGT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.23, C:0.33, G:0.28, T:0.16
Consensus pattern (30 bp):
ACACACGGCTGAGACACACGCCCGTGTGTC
Found at i:23165150 original size:41 final size:41
Alignment explanation
Indices: 23165055--23165297 Score: 319
Period size: 41 Copynumber: 6.0 Consensus size: 41
23165045 TTTTAAAATA
* * *
23165055 CAGAGCAATAGCGGCG-TTTTAAGAAAAATGCCGCTAAAAA-
1 CAGAGCAATAGCGGCGCTTTT-GGTAAAACGCCGCTAAAAAC
**
23165095 CAGAGCAATAGCGGCGCTTTTCTTAAAACGCCGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
** *
23165136 CAGAGCAATAGCGGCGCTTTTCTTAAAATGCCGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* *
23165177 TAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* * * *
23165218 TAGAGCATTAGCGGCGTTTTTGGTAAAACGCTGCTAAAAAC
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
* *
23165259 CAGGGCATTAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
1 CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAA
23165298 GTCATATAAC
Statistics
Matches: 185, Mismatches: 16, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
40 31 0.17
41 154 0.83
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (41 bp):
CAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGCTAAAAAC
Found at i:23166340 original size:15 final size:15
Alignment explanation
Indices: 23166320--23166350 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23166310 TTAATTTAGT
*
23166320 AGATAAATGTATATA
1 AGATAAATATATATA
23166335 AGATAAATATATATA
1 AGATAAATATATATA
23166350 A
1 A
23166351 ATTATTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (15 bp):
AGATAAATATATATA
Found at i:23166350 original size:10 final size:10
Alignment explanation
Indices: 23166337--23166388 Score: 50
Period size: 10 Copynumber: 4.8 Consensus size: 10
23166327 TGTATATAAG
23166337 ATAAATATAT
1 ATAAATATAT
23166347 ATAAATTATTATT
1 ATAAA-TA-TA-T
*
23166360 TTAAAATATAT
1 AT-AAATATAT
23166371 ATAAATATAT
1 ATAAATATAT
*
23166381 ATATATAT
1 ATAAATAT
23166389 GAAAAGTGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 20 0.57
11 4 0.11
12 4 0.11
13 4 0.11
14 3 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
ATAAATATAT
Found at i:23177332 original size:21 final size:21
Alignment explanation
Indices: 23177306--23177353 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
23177296 TCAACTTAGA
23177306 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
23177327 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
*
23177348 GTGGAG
1 GCGGAG
23177354 TAGAACAAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.23, C:0.17, G:0.58, T:0.02
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:23177691 original size:43 final size:43
Alignment explanation
Indices: 23177644--23177884 Score: 308
Period size: 43 Copynumber: 5.6 Consensus size: 43
23177634 ACTGGGCAAA
* *
23177644 TTAGCGGCATTTTTTAAAAAAGCGCCACTAAAAGTACAGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
23177687 TTAGCGGCATTTTTTTTTAAAAAA-CGCCGC-AAAAGTACGGGTCT
1 TTAGCGGCA---TTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
*
23177731 TTAGCGGTATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
* * *
23177774 GTAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACGGTTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
* * * * * *
23177817 GTAGTGGCATTTTTT-ATAAAGCGCCGCTAAAGGTCCTGGTCT
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
* *
23177859 TTAGCGGCGTTTTTTATAAAAGCGCC
1 TTAGCGGCATTTTTTAAAAAAGCGCC
23177885 AAAAACACTG
Statistics
Matches: 173, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
41 12 0.07
42 40 0.23
43 83 0.48
44 21 0.12
45 5 0.03
46 12 0.07
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (43 bp):
TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCT
Found at i:23177743 original size:87 final size:88
Alignment explanation
Indices: 23177644--23177879 Score: 302
Period size: 87 Copynumber: 2.7 Consensus size: 88
23177634 ACTGGGCAAA
*
23177644 TTAGCGGCATTTTTTAAAAAAGCGCCACTAAAAGTACAGGTCTTTAGCGGCATTTTTTTTTAAAA
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGC-TTTTTTTTTAAAA
23177709 AA-CGCCGC-AAAAGTACGGGTCT
65 AAGCGCCGCTAAAAGTACGGGTCT
* * * *
23177731 TTAGCGGTATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCTGTAGCGGC--GTTTTTTAAAAA
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCTTTTTTTTTAAAAA
*
23177794 AGCGCCGCTAAAAGTACGGTTCT
66 AGCGCCGCTAAAAGTACGGGTCT
* * * * * * * *
23177817 GTAGTGGCATTTTTT-ATAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAA
1 TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCTTTTTTTTTAAAA
23177880 GCGCCAAAAA
Statistics
Matches: 129, Mismatches: 16, Indels: 8
0.84 0.10 0.05
Matches are distributed among these distances:
84 12 0.09
85 36 0.28
86 25 0.19
87 56 0.43
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31
Consensus pattern (88 bp):
TTAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCTTTTTTTTTAAAAA
AGCGCCGCTAAAAGTACGGGTCT
Found at i:23177842 original size:85 final size:85
Alignment explanation
Indices: 23177645--23177884 Score: 313
Period size: 85 Copynumber: 2.8 Consensus size: 85
23177635 CTGGGCAAAT
* *
23177645 TAGCGGCATTTTTTAAAAAAGCGCCACTAAAAGTACAGGTCTTTAGCGGCATTTTTTTTTAAAAA
1 TAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGC---GTTTTTTAAAAA
*
23177710 A-CGCCGCAAAAGTACGGGTCTT
63 AGCGCCGCAAAAGTACGGGTCTG
* * *
23177732 TAGCGGTATTTTTTAAAAAAGCGCCGCTAAAAGTACGGGTCTGTAGCGGCGTTTTTTAAAAAAGC
1 TAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCGTTTTTTAAAAAAGC
*
23177797 GCCGCTAAAAGTACGGTTCTG
66 GCCGC-AAAAGTACGGGTCTG
* * * * * *
23177818 TAGTGGCATTTTTT-ATAAAGCGCCGCTAAAGGTCCTGGTCTTTAGCGGCGTTTTTTATAAAAGC
1 TAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCGTTTTTTAAAAAAGC
23177882 GCC
66 GCC
23177885 AAAAACACTG
Statistics
Matches: 136, Mismatches: 15, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
84 12 0.09
85 53 0.39
86 25 0.18
87 46 0.34
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.30
Consensus pattern (85 bp):
TAGCGGCATTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTTTAGCGGCGTTTTTTAAAAAAGC
GCCGCAAAAGTACGGGTCTG
Found at i:23182236 original size:55 final size:55
Alignment explanation
Indices: 23182150--23182287 Score: 179
Period size: 55 Copynumber: 2.5 Consensus size: 55
23182140 GGCCGTGGTT
* *
23182150 GAGCCTGCCAAAACAACACAGGTGTGAGACACGCCCGTGTGGAAG-AACCGTGGGC
1 GAGCCTGCCAAAACAACACGGGCGTGAGACACGCCCGTGTGG-AGCAACCGTGGGC
* *
23182205 GAGCCTGCCAAAACAACACGGGCGTGTGACACGCCCGTGTGGAGCAACCGTGGTC
1 GAGCCTGCCAAAACAACACGGGCGTGAGACACGCCCGTGTGGAGCAACCGTGGGC
* ** **
23182260 GAACCTGTTAAATTAACACGGGCGTGAG
1 GAGCCTGCCAAAACAACACGGGCGTGAG
23182288 GTTTACACAC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 2 0.03
55 70 0.97
ACGTcount: A:0.28, C:0.27, G:0.32, T:0.14
Consensus pattern (55 bp):
GAGCCTGCCAAAACAACACGGGCGTGAGACACGCCCGTGTGGAGCAACCGTGGGC
Found at i:23196196 original size:26 final size:26
Alignment explanation
Indices: 23196167--23196219 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
23196157 TAATAATTAG
*
23196167 TTCAAGAATGAGGAATTATAAATATT
1 TTCAAGAACGAGGAATTATAAATATT
*
23196193 TTCAAGAACGAGTAATTATAAATATT
1 TTCAAGAACGAGGAATTATAAATATT
23196219 T
1 T
23196220 AAAACCTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.36
Consensus pattern (26 bp):
TTCAAGAACGAGGAATTATAAATATT
Found at i:23202746 original size:39 final size:40
Alignment explanation
Indices: 23202537--23202838 Score: 380
Period size: 40 Copynumber: 7.6 Consensus size: 40
23202527 TTGAATGCTG
* * * * * *
23202537 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
23202577 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23202617 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
23202657 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
23202697 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23202736 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23202776 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTAAA
* *
23202816 T-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23202839 TGAACGAGGA
Statistics
Matches: 239, Mismatches: 18, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
39 69 0.29
40 162 0.68
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:23202858 original size:79 final size:80
Alignment explanation
Indices: 23202537--23202873 Score: 357
Period size: 79 Copynumber: 4.2 Consensus size: 80
23202527 TTGAATGCTG
* * * * * * * *
23202537 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* *
23202600 TTGTGCGAGATA-CTAAA
64 TCGTGCGAG-TAGTTAAA
*
23202617 TCCGGGTTAAGTCCCGAAGGCATTGGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
23202682 GTGCGAGTTA-TTAAA
66 GTGCGAG-TAGTTAAA
23202697 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
23202761 GTGCGAGTTGTTAAA
66 GTGCGAGTAGTTAAA
* * * * *
23202776 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAAT-CGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TTAAATCCGGGTTAAGTCCCGAAGGCATT
* ** * * *
23202839 TGAACGAGGAGCTATA
65 CGTGCGAGTAGTTAAA
*
23202855 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
23202874 TACGTGATTT
Statistics
Matches: 225, Mismatches: 27, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
78 23 0.10
79 98 0.44
80 98 0.44
81 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTAGTTAAA
Found at i:23210552 original size:40 final size:40
Alignment explanation
Indices: 23210469--23210807 Score: 440
Period size: 40 Copynumber: 8.6 Consensus size: 40
23210459 TTGAATGCTG
* * * * * *
23210469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
23210509 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
23210549 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
23210589 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
23210629 TCCGGGTTAAGTCCCGAAGGCA-T--T-CGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23210665 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
23210705 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23210745 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
23210784 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23210808 TGAACGAGGA
Statistics
Matches: 273, Mismatches: 19, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
36 34 0.12
37 2 0.01
39 37 0.14
40 192 0.70
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:23210704 original size:116 final size:119
Alignment explanation
Indices: 23210469--23210807 Score: 463
Period size: 116 Copynumber: 2.9 Consensus size: 119
23210459 TTGAATGCTG
* * * * * * * *
23210469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGG-CA
*
23210532 TTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
63 TTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
23210589 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCA-T-
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
* *
23210652 T-CGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
23210705 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
* * * *
23210770 TGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
66 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
23210808 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 18, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
116 109 0.56
117 2 0.01
118 2 0.01
119 33 0.17
120 44 0.22
121 6 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTG
TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:23213092 original size:27 final size:28
Alignment explanation
Indices: 23213057--23213131 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 28
23213047 TAGAGAGTCT
*
23213057 ATCGGGACATTAAACAAGT-GG-TAGTTC
1 ATCGAGACATTAAACAA-TAGGATAGTTC
* *
23213084 ATTGAGACAATAAA-AATAGGATAGTTC
1 ATCGAGACATTAAACAATAGGATAGTTC
* *
23213111 ATCGAAACATTAAACACTAGG
1 ATCGAGACATTAAACAATAGG
23213132 TCGGCCGTCA
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 28 0.74
28 5 0.13
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (28 bp):
ATCGAGACATTAAACAATAGGATAGTTC
Found at i:23219190 original size:27 final size:27
Alignment explanation
Indices: 23219160--23219265 Score: 117
Period size: 27 Copynumber: 3.9 Consensus size: 27
23219150 GGCTGCCAAA
* *
23219160 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
* * *
23219187 ACAGATGATCGTGGCAAAGCCATCAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
23219214 ACAGATATATGTGGCAGAGCCACCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
23219242 -CAGATAATTGTGGCATAGCCACCA
1 ACAGATAA-TGTGGCAGAGCCACCA
23219266 AGACGCTTCC
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
26 1 0.02
27 50 0.76
28 15 0.23
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:23219255 original size:54 final size:54
Alignment explanation
Indices: 23219159--23219262 Score: 147
Period size: 54 Copynumber: 1.9 Consensus size: 54
23219149 TGGCTGCCAA
* *
23219159 AACAGATAATGTGACAGAGTCACCAGATACAGATGATCGTGGCAAAGCCATCAG
1 AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCATCAG
* * *
23219213 AACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 AACAGATA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCA
23219263 CCAAGACGCT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 26 0.59
55 18 0.41
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (54 bp):
AACAGATAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAAAGCCATCAG
Found at i:23226020 original size:16 final size:16
Alignment explanation
Indices: 23226001--23226031 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23225991 TTTTTTAATC
23226001 CTTTGTTTTCGAAAAT
1 CTTTGTTTTCGAAAAT
*
23226017 CTTTGTTTTTGAAAA
1 CTTTGTTTTCGAAAA
23226032 GCAATTCCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.10, G:0.13, T:0.52
Consensus pattern (16 bp):
CTTTGTTTTCGAAAAT
Found at i:23226538 original size:27 final size:27
Alignment explanation
Indices: 23226508--23226614 Score: 119
Period size: 27 Copynumber: 3.9 Consensus size: 27
23226498 GGCTGCCAAA
* *
23226508 ACAGATAATGTGACAGAGTCACCAGAT
1 ACAGATAATGTGGCAGAGCCACCAGAT
*
23226535 ACAGATAATCGTGGCAGAGCCACTAGA-
1 ACAGATAAT-GTGGCAGAGCCACCAGAT
* *
23226562 ACTGATATATGTGGCAGAGCCTCCAGAT
1 ACAGATA-ATGTGGCAGAGCCACCAGAT
*
23226590 -CAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
23226615 GACGCTTCCT
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
26 1 0.01
27 50 0.75
28 16 0.24
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
ACAGATAATGTGGCAGAGCCACCAGAT
Found at i:23227848 original size:17 final size:17
Alignment explanation
Indices: 23227828--23227860 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23227818 GTTGATGAGG
23227828 AAAGAAAAAAGAAGAAA
1 AAAGAAAAAAGAAGAAA
*
23227845 AAAGAAAAAGGAAGAA
1 AAAGAAAAAAGAAGAA
23227861 TGGTCAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (17 bp):
AAAGAAAAAAGAAGAAA
Found at i:23228628 original size:50 final size:50
Alignment explanation
Indices: 23228565--23228659 Score: 145
Period size: 50 Copynumber: 1.9 Consensus size: 50
23228555 CGAAGCTCTA
* * *
23228565 TGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATC
1 TGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATC
* *
23228615 TGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAA
1 TGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAA
23228660 AACCGTCTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (50 bp):
TGGTACACATAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATC
Found at i:23231152 original size:50 final size:50
Alignment explanation
Indices: 23231075--23231316 Score: 308
Period size: 50 Copynumber: 4.9 Consensus size: 50
23231065 GGGTAAAATA
* * *
23231075 CCGATGCCATGTCCGAGACATGGTCTTACACTAGCTCTCATATATCGGTA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTG
*
23231125 CTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTG
* * * * *
23231175 CCAATGCCATGTTCTAGTCATGGTCTTACACTAGCTCTCATATATCGGTG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTG
* * * **
23231225 CCGATGCCATGTCCCAGACAAGGTCTTACATTGGCTCACATA-A-CAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTG
* * * *
23231273 CCAATGCCATGTTCCAAACATGGTCTTACACTGGCTCGCATATA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATA
23231317 ACCCTAGTAT
Statistics
Matches: 165, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
48 39 0.24
49 2 0.01
50 124 0.75
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (50 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATATATCGGTG
Found at i:23233372 original size:20 final size:19
Alignment explanation
Indices: 23233349--23233397 Score: 55
Period size: 20 Copynumber: 2.6 Consensus size: 19
23233339 ATTAATTATT
*
23233349 TATAAAATTTATTTAGAATA
1 TATAAAATATATTTA-AATA
*
23233369 TATAAACTATATTTAAATA
1 TATAAAATATATTTAAATA
*
23233388 T-TTAAATATA
1 TATAAAATATA
23233398 ACCATTAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
18 7 0.28
19 5 0.20
20 13 0.52
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
TATAAAATATATTTAAATA
Found at i:23233393 original size:19 final size:19
Alignment explanation
Indices: 23233349--23233397 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
23233339 ATTAATTATT
*
23233349 TATA-AAATTTATTTAGAA
1 TATATAAATATATTTAGAA
23233367 TATATAAACTATATTTA-AA
1 TATATAAA-TATATTTAGAA
*
23233386 TATTTAAATATA
1 TATATAAATATA
23233398 ACCATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 8 0.30
19 12 0.44
20 7 0.26
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
TATATAAATATATTTAGAA
Found at i:23236171 original size:28 final size:28
Alignment explanation
Indices: 23236129--23236230 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
23236119 TAATTATATG
** *
23236129 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * *
23236157 TGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
*
23236185 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
*
23236213 TGGAACTTAGTGTGCGAA
1 TGGCACTTAGTGTGCGAA
23236231 ACATCCAGAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
27 1 0.02
28 59 0.97
29 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:23236215 original size:56 final size:56
Alignment explanation
Indices: 23236129--23236259 Score: 183
Period size: 56 Copynumber: 2.4 Consensus size: 56
23236119 TAATTATATG
** * * * *
23236129 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAA
23236185 TGGCACTTAGTGTGCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAA
* *
23236241 CGACACTTAGTGTGC-AAGT
1 TGGCACTTAGTGTGCGAAGT
23236260 TATCAAATAT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
55 4 0.06
56 63 0.94
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACGAGGATGGAACTTAGTGTGCGAAACATCCAGAA
Found at i:23236248 original size:28 final size:28
Alignment explanation
Indices: 23236160--23236255 Score: 95
Period size: 28 Copynumber: 3.4 Consensus size: 28
23236150 TCGGGGATGG
* * *
23236160 CACTTAGTGTGCGATACATCCAGAATGG
1 CACTTAGTGTGCGAAACATCCAGAACGA
** * * **
23236188 CACTTAGTGTGCGAAGTAACGAGGATGGA
1 CACTTAGTGTGCGAAACATCCA-GAACGA
23236217 -ACTTAGTGTGCGAAACATCCAGAACGA
1 CACTTAGTGTGCGAAACATCCAGAACGA
23236244 CACTTAGTGTGC
1 CACTTAGTGTGC
23236256 AAGTTATCAA
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
27 4 0.08
28 45 0.87
29 3 0.06
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (28 bp):
CACTTAGTGTGCGAAACATCCAGAACGA
Found at i:23236369 original size:32 final size:32
Alignment explanation
Indices: 23236333--23236425 Score: 105
Period size: 32 Copynumber: 2.9 Consensus size: 32
23236323 TGAGTATGAG
**
23236333 ATTGGTACGGGATGATACAGGTATCTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * *
23236365 ATTGGTACAATATGGTACAGGTATGTACGAAA
1 ATTGGTACAAGATGATACAGGTATCTACGAAA
* * * *
23236397 ATTGGTACAATATGGTACATGTATGTACG
1 ATTGGTACAAGATGATACAGGTATCTACG
23236426 GAGATTCAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 55 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (32 bp):
ATTGGTACAAGATGATACAGGTATCTACGAAA
Found at i:23238296 original size:17 final size:17
Alignment explanation
Indices: 23238274--23238307 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23238264 AATAAAAGTG
23238274 TCCATCTTCTCAATTTA
1 TCCATCTTCTCAATTTA
23238291 TCCATCTTCTCAATTTA
1 TCCATCTTCTCAATTTA
23238308 GTCCCTCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.47
Consensus pattern (17 bp):
TCCATCTTCTCAATTTA
Found at i:23250135 original size:101 final size:101
Alignment explanation
Indices: 23249960--23250249 Score: 420
Period size: 101 Copynumber: 2.9 Consensus size: 101
23249950 TATTCAAACA
* *
23249960 TAAGACCATGGTTGGACCATGGTAGTTTTTATATGTAAGTCCATAGTTGGGCTATGGCATTCTTA
1 TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGTCCATAGTTGGGCTATGACATTCTTA
*
23250025 TGATAAGACCATATCTGGGTTATGGT-ACTATGGACG
66 TGATAAGACCATAACTGGGTTAT-GTCACTATGGACG
* *
23250061 TAAGACCATGGCTGGACCATGGTAGTGTTTATATGTAAGTCCATAGTTGGGTTATGACATTCTTA
1 TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGTCCATAGTTGGGCTATGACATTCTTA
* * * *
23250126 TGATAAGACCCTAAGTAGATTATGTCACTATGGACG
66 TGATAAGACCATAACTGGGTTATGTCACTATGGACG
* * * * * *
23250162 TAAGACCATGGTTGGACTATGGCAGTGTTTATATGTAAGACCATAGCTAGGCTATGACATTCTAA
1 TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGTCCATAGTTGGGCTATGACATTCTTA
*
23250227 TAATAAGACCATAACTGGGTTAT
66 TGATAAGACCATAACTGGGTTAT
23250250 AGCACTACAA
Statistics
Matches: 166, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
100 2 0.01
101 164 0.99
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGTAGTGTTTATATGTAAGTCCATAGTTGGGCTATGACATTCTTA
TGATAAGACCATAACTGGGTTATGTCACTATGGACG
Found at i:23250285 original size:101 final size:100
Alignment explanation
Indices: 23249960--23250316 Score: 396
Period size: 101 Copynumber: 3.6 Consensus size: 100
23249950 TATTCAAACA
* * * * *
23249960 TAAGACCATGGTTGGACCATGGTAGTTTTTATATGTAAGTCCATAGTTGGGCTATGGCATTCTTA
1 TAAGACCATGGCTGGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGGCTATGACATTCTTA
* *
23250025 TGATAAGACCATATCTGGGTTATGGTACTATGGACG
66 TGATAAGACCATAACTGGGTTAT-GCACTATGGACG
* * *
23250061 TAAGACCATGGCTGGACCATGGTAGTGTTTATATGTAAGTCCATAGTTGGGTTATGACATTCTTA
1 TAAGACCATGGCTGGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGGCTATGACATTCTTA
* * * *
23250126 TGATAAGACCCTAAGTAGATTATGTCACTATGGACG
66 TGATAAGACCATAACTGGGTTATG-CACTATGGACG
* * * * *
23250162 TAAGACCATGGTTGGACTATGGCAGTGTTTATATGTAAGACCATAGCTAGGCTATGACATTCTAA
1 TAAGACCATGGCTGGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGGCTATGACATTCTTA
* *** *
23250227 TAATAAGACCATAACTGGGTTATAGCACTACAAATG
66 TGATAAGACCATAACTGGGTTAT-GCACTATGGACG
* * * * *
23250263 TAAGACCGTGGCAGGGCCATGGCA--ATATATATGTAAGACCATAG-TGGGACTATG
1 TAAGACCATGGCTGGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGG-CTATG
23250317 GCACAATAGA
Statistics
Matches: 218, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
98 3 0.01
99 23 0.11
100 1 0.00
101 190 0.87
102 1 0.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (100 bp):
TAAGACCATGGCTGGACCATGGCAGTGTTTATATGTAAGACCATAGTTGGGCTATGACATTCTTA
TGATAAGACCATAACTGGGTTATGCACTATGGACG
Found at i:23252345 original size:16 final size:16
Alignment explanation
Indices: 23252320--23252350 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23252310 CCATGTGGGC
23252320 CCAATAGGCCTACGGT
1 CCAATAGGCCTACGGT
*
23252336 CCAATGGGCCTACGG
1 CCAATAGGCCTACGG
23252351 GCCCAATTGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.32, G:0.29, T:0.16
Consensus pattern (16 bp):
CCAATAGGCCTACGGT
Found at i:23252559 original size:27 final size:27
Alignment explanation
Indices: 23252529--23252655 Score: 175
Period size: 27 Copynumber: 4.7 Consensus size: 27
23252519 TTAGTTTACC
23252529 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
23252556 AAATTACTAAAATACCCTTGGTATATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
23252583 AAATCACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23252610 AAATTACC-AAATACCCCTTGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
23252636 AAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
23252656 TAGGGTAGAA
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 25 0.29
27 61 0.71
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:23252667 original size:27 final size:27
Alignment explanation
Indices: 23252611--23252831 Score: 225
Period size: 27 Copynumber: 8.3 Consensus size: 27
23252601 TAGTTTGTAA
** *
23252611 AATTACC-AAATACCCCTTGT-TTGTAA
1 AATTACCGAAATACCCC-TGTAGGGTAG
23252637 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
23252664 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
23252691 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* **
23252718 AATTACCGGAATACCTTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
23252745 AAATATCGAAATACCCTTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* ** *
23252772 AACTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
23252799 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
23252825 AATTACC
1 AATTACC
23252832 ATTTTGCCCC
Statistics
Matches: 166, Mismatches: 26, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
26 28 0.17
27 138 0.83
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:23253265 original size:6 final size:6
Alignment explanation
Indices: 23253234--23253307 Score: 62
Period size: 6 Copynumber: 12.0 Consensus size: 6
23253224 TTGCATTCAC
* * *
23253234 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
*
23253283 -TTACCTG ATACTG ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG
23253308 TCACCTAATT
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
5 4 0.07
6 42 0.78
7 6 0.11
8 2 0.04
ACGTcount: A:0.19, C:0.16, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:23253265 original size:25 final size:25
Alignment explanation
Indices: 23253237--23253322 Score: 82
Period size: 25 Copynumber: 3.2 Consensus size: 25
23253227 CATTCACATT
23253237 CTGATTTTGATTCTGTTACCTGATACTGA
1 CTGATTTTGATTCTGTTACCTG--A-T-A
23253266 TTCTGATTTTGATTCTGTTACCTGATA
1 --CTGATTTTGATTCTGTTACCTGATA
* * * *
23253293 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTTTGATTCTGTTACCTGATA
23253318 CTGAT
1 CTGAT
23253323 AATGTTTCTT
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
25 26 0.51
27 1 0.02
28 1 0.02
29 1 0.02
31 22 0.43
ACGTcount: A:0.20, C:0.19, G:0.15, T:0.47
Consensus pattern (25 bp):
CTGATTTTGATTCTGTTACCTGATA
Found at i:23253266 original size:19 final size:19
Alignment explanation
Indices: 23253244--23253301 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
23253234 ATTCTGATTT
23253244 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
23253263 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
23253275 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
23253294 TGATTCTG
1 TGATTCTG
23253302 ATTCTGTCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:23253272 original size:31 final size:31
Alignment explanation
Indices: 23253234--23253304 Score: 142
Period size: 31 Copynumber: 2.3 Consensus size: 31
23253224 TTGCATTCAC
23253234 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
23253265 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
23253296 ATTCTGATT
1 ATTCTGATT
23253305 CTGTCACCTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.20, C:0.15, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:23260075 original size:53 final size:54
Alignment explanation
Indices: 23259946--23260200 Score: 265
Period size: 55 Copynumber: 4.8 Consensus size: 54
23259936 ACACGGGTAC
* * * *
23259946 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
23259995 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
23260048 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
23260103 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* *
23260156 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
23260201 AAACCCTAAT
Statistics
Matches: 172, Mismatches: 23, Indels: 16
0.82 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.28
54 10 0.06
55 71 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.35
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:23260137 original size:108 final size:110
Alignment explanation
Indices: 23259993--23260190 Score: 312
Period size: 108 Copynumber: 1.8 Consensus size: 110
23259983 ATCCTTTTGA
* *
23259993 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
23260056 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
23260101 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
23260166 TGCCATGCCTTGGCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
23260191 CGGTATCCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.59
109 7 0.09
110 25 0.31
ACGTcount: A:0.23, C:0.26, G:0.18, T:0.34
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:23261608 original size:48 final size:47
Alignment explanation
Indices: 23261543--23261714 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 47
23261533 TATCTATGTT
*
23261543 GATGCCATGTTCCAGACATGGTCTTACACTGACACCTCTAT-ATGTGCC
1 GATGCCATGTCCCAGACAT-GTCTTACACTGAC-CCTCTATAATGTGCC
* * *
23261591 GATGCCATGTCCCAGACATGTCTTACACT-AGCTCTTGTCTCAA--TGCC
1 GATGCCATGTCCCAGACATGTCTTACACTGA-C-CCTCTAT-AATGTGCC
* * * *
23261638 GACGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATAATGTGGCA
1 GATGCCATGTCCCAGACAT-GTCTTACACTGACCCTCTATAATGT-GCC
*
23261686 GATG-GATGTCCCAGACATGTCTTACACTG
1 GATGCCATGTCCCAGACATGTCTTACACTG
23261715 GCACACAAAT
Statistics
Matches: 102, Mismatches: 14, Indels: 18
0.76 0.10 0.13
Matches are distributed among these distances:
45 2 0.02
46 13 0.13
47 52 0.51
48 34 0.33
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGTCTTACACTGACCCTCTATAATGTGCC
Found at i:23267958 original size:21 final size:20
Alignment explanation
Indices: 23267925--23267965 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
23267915 CTTTGAAACT
*
23267925 GGGCACATGCCCGTGTGGAA
1 GGGCACACGCCCGTGTGGAA
23267945 GGGCAACACGCCCGTGTGGAA
1 GGGC-ACACGCCCGTGTGGAA
23267966 CTTGTACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (20 bp):
GGGCACACGCCCGTGTGGAA
Found at i:23271360 original size:28 final size:28
Alignment explanation
Indices: 23271320--23271380 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
23271310 CTTCGATGTT
* *
23271320 TTGCACACTAAGTTCCATACTCAATATC
1 TTGCACACAAAGTGCCATACTCAATATC
* * *
23271348 TTGCACACAAAGTGCCATTCTTAATATT
1 TTGCACACAAAGTGCCATACTCAATATC
23271376 TTGCA
1 TTGCA
23271381 TACTACGTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.10, T:0.34
Consensus pattern (28 bp):
TTGCACACAAAGTGCCATACTCAATATC
Found at i:23285198 original size:40 final size:42
Alignment explanation
Indices: 23285104--23285256 Score: 125
Period size: 40 Copynumber: 3.7 Consensus size: 42
23285094 CCGAGGCTAT
23285104 GTGTAAGACCATATCTGGGATAGGGCATCATTATGAGATTTC
1 GTGTAAGACCATATCTGGGATAGGGCATCATTATGAGATTTC
* * * * *
23285146 GTGCAAGGCCATATTTGGGATA-TG-A-CATTGATGTGATTTC
1 GTGTAAGACCATATCTGGGATAGGGCATCATT-ATGAGATTTC
* * * * * *
23285186 GTGTAAGACCATAGCTGGGCTACTGGTATTGA-TATGAGATTAC
1 GTGTAAGACCATATCTGGGATA-GGGCA-TCATTATGAGATTTC
* * *
23285229 ATGTAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATATCTGGGATAGGGCAT
23285257 TGGTATGGTA
Statistics
Matches: 86, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
39 4 0.05
40 27 0.31
41 2 0.02
42 24 0.28
43 27 0.31
44 1 0.01
45 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATAGGGCATCATTATGAGATTTC
Found at i:23299843 original size:30 final size:30
Alignment explanation
Indices: 23299785--23299844 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
23299775 TTCCCGAGCC
* * *
23299785 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
* *
23299815 TAGGGGAAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAATGTAATTATGCAAAAGTT
23299845 CGTATTAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.05, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAATGTAATTATGCAAAAGTT
Found at i:23306435 original size:11 final size:11
Alignment explanation
Indices: 23306419--23306443 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
23306409 TTTAGTTCAA
23306419 GTTAAATGTAT
1 GTTAAATGTAT
23306430 GTTAAATGTAT
1 GTTAAATGTAT
23306441 GTT
1 GTT
23306444 TATAATGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (11 bp):
GTTAAATGTAT
Found at i:23331691 original size:45 final size:44
Alignment explanation
Indices: 23331601--23331731 Score: 156
Period size: 45 Copynumber: 3.0 Consensus size: 44
23331591 CTGAATTTAT
* * * *
23331601 TCACCGGCATT-TTGCCTGCTAGGCTCGAGGCCCAAAAAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
* * *
23331644 TCACTGGCATTATAGCCTGCTAAGCTCAAAGGCCCGAATAATGTC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAGGCCCGAATAATATC
* *
23331689 TCACCAGTATTATAGCCTGCTAGGCTCCAAGGCCCGAATAATA
1 TCACCGGCATTATAGCCTGCTAGGCT-CAAGGCCCGAATAATA
23331732 CTGTACAACA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
43 10 0.14
44 13 0.18
45 49 0.67
46 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (44 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAGGCCCGAATAATATC
Found at i:23335278 original size:71 final size:71
Alignment explanation
Indices: 23335162--23335304 Score: 268
Period size: 71 Copynumber: 2.0 Consensus size: 71
23335152 TAACACCCTG
23335162 AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
1 AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
23335227 TTGTGC
66 TTGTGC
* *
23335233 AATTTGGGCTTAGAAGTTTTGGGCCTTGAGCATGGGAGTGGTTGAAGGCAGCTTATAATATTCTG
1 AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
23335298 TTGTGC
66 TTGTGC
23335304 A
1 A
23335305 TGTAAATTTC
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 70 1.00
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.34
Consensus pattern (71 bp):
AATTTGGGCCTAGAAGTTTTGGGCCTTGAGCATGGGAGCGGTTGAAGGCAGCTTATAATATTCTG
TTGTGC
Found at i:23336133 original size:27 final size:27
Alignment explanation
Indices: 23336103--23336367 Score: 395
Period size: 27 Copynumber: 9.8 Consensus size: 27
23336093 AATACCAAAG
23336103 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
23336130 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
23336157 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
23336184 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
23336211 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* **
23336238 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
23336265 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
23336292 TACCCTCGATTTAAAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
**
23336319 TACCCTCGATTTATGGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
23336346 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTACAGAATTAC
23336368 CGAAATACCC
Statistics
Matches: 217, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 217 1.00
ACGTcount: A:0.28, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:23336395 original size:27 final size:27
Alignment explanation
Indices: 23336365--23336588 Score: 216
Period size: 27 Copynumber: 8.0 Consensus size: 27
23336355 TTTACAAAAT
*
23336365 TACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
*
23336392 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 TACCGAAATACCCCTGTA-GG--G---TA--GAAA
*
23336427 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
23336454 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
23336481 TACCGAAATACCTTTGTAGGGTAAAAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
* *
23336508 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
** *
23336535 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACCGAAATACCCCTGTAGGGTAGAAA
* * *
23336562 TACCGAGATACCCTTGTGGGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAAA
23336588 T
1 T
23336589 TACCATTTTA
Statistics
Matches: 167, Mismatches: 22, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
26 3 0.02
27 133 0.80
28 2 0.01
29 2 0.01
30 1 0.01
32 1 0.01
33 2 0.01
34 2 0.01
35 21 0.13
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
TACCGAAATACCCCTGTAGGGTAGAAA
Found at i:23336463 original size:35 final size:35
Alignment explanation
Indices: 23336389--23336465 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
23336379 TGTAGGGTAG
* *
23336389 AAATACCGAAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCGAAATACCCCTGTAGGGTAGAAATACCA
* *
23336424 AAATACCGAAATACCCCTGTAGGGTAGAATTACTA
1 AAATACCGAAATACCCCTGTAGGGTAGAAATACCA
23336459 AAATACC
1 AAATACC
23336466 CCTGTAGGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.21
Consensus pattern (35 bp):
AAATACCGAAATACCCCTGTAGGGTAGAAATACCA
Found at i:23336463 original size:62 final size:62
Alignment explanation
Indices: 23336365--23336492 Score: 202
Period size: 62 Copynumber: 2.1 Consensus size: 62
23336355 TTTACAAAAT
* * *
23336365 TACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAAATACCGAAA
* * *
23336427 TACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
1 TACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAAATACCGAAA
23336489 TACC
1 TACC
23336493 TTTGTAGGGT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 60 1.00
ACGTcount: A:0.38, C:0.21, G:0.20, T:0.22
Consensus pattern (62 bp):
TACCGAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTGTAGGGTAGAAATACCGAAA
Found at i:23336559 original size:81 final size:81
Alignment explanation
Indices: 23336424--23336592 Score: 293
Period size: 81 Copynumber: 2.1 Consensus size: 81
23336414 AGAAATACCG
23336424 AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
*
23336489 TACCTTTGTAGGGTAA
66 TACCCTTGTAGGGTAA
* *
23336505 AAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAGA
1 AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
*
23336570 TACCCTTGTGGGGTAA
66 TACCCTTGTAGGGTAA
*
23336586 AATTACC
1 AAATACC
23336593 ATTTTACCCC
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (81 bp):
AAATACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGAAA
TACCCTTGTAGGGTAA
Found at i:23336956 original size:26 final size:27
Alignment explanation
Indices: 23336927--23336986 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
23336917 CCACATATAT
*
23336927 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
23336953 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
23336980 ATATCTG
1 ATATCTG
23336987 GTAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:23337114 original size:6 final size:6
Alignment explanation
Indices: 23337105--23337278 Score: 124
Period size: 6 Copynumber: 28.3 Consensus size: 6
23337095 TTGCATTCAC
* * *
23337105 ATTCTG ATTCTG ATTCT- ATTACTTG ATACTG ATTCTG ATTATG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* * *
23337155 ATTTTG ATTCTG GTTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * *
23337204 ATTCTG ATTCTG ATTTTG ATTCTG -TCACCTG ATTCTG GTTCTG ATTCTA
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
23337253 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
23337279 AATGTTTCTT
Statistics
Matches: 131, Mismatches: 23, Indels: 28
0.72 0.13 0.15
Matches are distributed among these distances:
5 10 0.08
6 105 0.80
7 9 0.07
8 7 0.05
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:23337140 original size:31 final size:31
Alignment explanation
Indices: 23337105--23337214 Score: 136
Period size: 31 Copynumber: 3.5 Consensus size: 31
23337095 TTGCATTCAC
23337105 ATTCTGATTCTGATTCTATTACTTGATACTG
1 ATTCTGATTCTGATTCTATTACTTGATACTG
* *
23337136 ATTCTGATTATG-TTACCTAATT--TTGATTCTG
1 ATTCTGATTCTGATT--CT-ATTACTTGATACTG
* *
23337167 GTTCTGATTCTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACTTGATACTG
23337198 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
23337215 GATTTTGATT
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
29 3 0.05
30 4 0.06
31 52 0.79
32 4 0.06
33 3 0.05
ACGTcount: A:0.21, C:0.16, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACTTGATACTG
Found at i:23337189 original size:37 final size:37
Alignment explanation
Indices: 23337128--23337218 Score: 119
Period size: 37 Copynumber: 2.5 Consensus size: 37
23337118 TTCTATTACT
* * **
23337128 TGATACTGATTCTGATTATGTTACCTAATTTTGATTC
1 TGATTCTGATTCTGATTATATTACCTAATACTGATTC
* * *
23337165 TGGTTCTGATTCTGATTCTATTACCTGATACTGATTC
1 TGATTCTGATTCTGATTATATTACCTAATACTGATTC
23337202 TGATTCTGATTCTGATT
1 TGATTCTGATTCTGATT
23337219 TTGATTCTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 46 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTGATTATATTACCTAATACTGATTC
Found at i:23337203 original size:62 final size:61
Alignment explanation
Indices: 23337106--23337227 Score: 192
Period size: 62 Copynumber: 2.0 Consensus size: 61
23337096 TGCATTCACA
*
23337106 TTCTGATTCTGATTCTATTACTTGATACTGATTCTGATTATG-TTACCTAATTTTGATTCTGG
1 TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGATT--CTAATTTTGATTCTGG
* *
23337168 TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGATTCTGATTTTGATTCTG
1 TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGATTCTAATTTTGATTCTG
23337228 TCACCTGATT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
61 14 0.25
62 40 0.71
63 2 0.04
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.50
Consensus pattern (61 bp):
TTCTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGATTCTAATTTTGATTCTGG
Found at i:23337234 original size:43 final size:43
Alignment explanation
Indices: 23337159--23337270 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
23337149 TACCTAATTT
* * *
23337159 TGATTCTGGTTCTGATTCTGATTCTATTACCTGATACTGATTC
1 TGATTCTGATTCTGATTTTGATTCTATCACCTGATACTGATTC
* * *
23337202 TGATTCTGATTCTGATTTTGATTCTGTCACCTGATTCTGGTTC
1 TGATTCTGATTCTGATTTTGATTCTATCACCTGATACTGATTC
* *
23337245 TGATTCTAATTCTCATTTTGATTCTA
1 TGATTCTGATTCTGATTTTGATTCTA
23337271 GTTCTGATAA
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.49
Consensus pattern (43 bp):
TGATTCTGATTCTGATTTTGATTCTATCACCTGATACTGATTC
Found at i:23337236 original size:37 final size:36
Alignment explanation
Indices: 23337159--23337257 Score: 121
Period size: 37 Copynumber: 2.7 Consensus size: 36
23337149 TACCTAATTT
23337159 TGATTCTGGTTCTGATTCTGATTCTATTACCTGATAC
1 TGATTCTGGTTCTGATTCTGATTCTATTA-CTGATAC
* *
23337196 TGATTCTGATTCTGATTCTGATTTTGATT-CTG-TCACC
1 TGATTCTGGTTCTGATTCTGATTCT-ATTACTGAT-A-C
*
23337233 TGATTCTGGTTCTGATTCTAATTCT
1 TGATTCTGGTTCTGATTCTGATTCT
23337258 CATTTTGATT
Statistics
Matches: 54, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
35 1 0.02
36 4 0.07
37 46 0.85
38 3 0.06
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.48
Consensus pattern (36 bp):
TGATTCTGGTTCTGATTCTGATTCTATTACTGATAC
Found at i:23337236 original size:62 final size:61
Alignment explanation
Indices: 23337108--23337245 Score: 181
Period size: 62 Copynumber: 2.2 Consensus size: 61
23337098 CATTCACATT
* *
23337108 CTGATTCTGATTCTATTACTTGATACTGATTCTGATTATGTTACCTAATTTTGATTCTGGTT
1 CTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGTTA-CTAATTTTGATTCTGGTC
* *
23337170 CTGATTCTGATTCTATTACCTGATACTGATTCTGATTCTGATT-CTGATTTTGATTCT-GTCAC
1 CTGATTCTGATTCTATTACCTGATACTGATTCTGATTATG-TTACTAATTTTGATTCTGGT--C
*
23337232 CTGATTCTGGTTCT
1 CTGATTCTGATTCT
23337246 GATTCTAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
60 2 0.03
61 13 0.19
62 51 0.75
63 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (61 bp):
CTGATTCTGATTCTATTACCTGATACTGATTCTGATTATGTTACTAATTTTGATTCTGGTC
Found at i:23341561 original size:33 final size:33
Alignment explanation
Indices: 23341511--23341594 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
23341501 GTTTATTGTC
23341511 CCAACGGACTATCTCTGTTCTGTACTTACTATT
1 CCAACGGACTATCTCTGTTCTGTACTTACTATT
* * * * *
23341544 CCAAC-GAGCTATTTCTGTTTTGTATTTACTGTC
1 CCAACGGA-CTATCTCTGTTCTGTACTTACTATT
**
23341577 CCAACAAACTATCTCTGT
1 CCAACGGACTATCTCTGT
23341595 GGATGCCATG
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
32 2 0.05
33 39 0.93
34 1 0.02
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (33 bp):
CCAACGGACTATCTCTGTTCTGTACTTACTATT
Found at i:23349219 original size:26 final size:26
Alignment explanation
Indices: 23349190--23349358 Score: 99
Period size: 26 Copynumber: 6.8 Consensus size: 26
23349180 TCTTCTCTCA
*
23349190 AGCCATATAA-CAGGAAGGTCACAAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
23349216 AGCCATTAATCGGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* ***
23349242 AGCC--T-ATCAGGAAGCTTA-TTCG
1 AGCCATTAATCAGGAAGCTCACAAAG
* * * *
23349264 GGCTATATAAT-AAGAAGCTCA-TAAG
1 AGCCAT-TAATCAGGAAGCTCACAAAG
*
23349289 AGCCA-TAATCAGGAAGTTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* * *
23349314 A-ACTTTCAATCAGGAAGCTCACGAAG
1 AGCCATT-AATCAGGAAGCTCACAAAG
23349340 AGCC-TTCAATCAGG-AGCTC
1 AGCCATT-AATCAGGAAGCTC
23349359 TGGACAGCCA
Statistics
Matches: 110, Mismatches: 23, Indels: 21
0.71 0.15 0.14
Matches are distributed among these distances:
22 3 0.03
23 15 0.14
24 10 0.09
25 27 0.25
26 54 0.49
27 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.19
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:23360993 original size:23 final size:24
Alignment explanation
Indices: 23360942--23360993 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
23360932 CCTTGTAATG
* *
23360942 GGAAGCTCACACAGAGCCATTTCA
1 GGAAGCTCACAAAGAGCCATCTCA
*
23360966 GGAAGCTCATAAAGAGCC-TCTCA
1 GGAAGCTCACAAAGAGCCATCTCA
23360989 GGAAG
1 GGAAG
23360994 GTTACCGGAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.35, C:0.25, G:0.25, T:0.15
Consensus pattern (24 bp):
GGAAGCTCACAAAGAGCCATCTCA
Found at i:23361057 original size:25 final size:23
Alignment explanation
Indices: 23361007--23361057 Score: 57
Period size: 25 Copynumber: 2.1 Consensus size: 23
23360997 ACCGGACTAT
* *
23361007 ATAATAGGAAGCTCATAAGAGCC
1 ATAATAGGAAGCTCAAAAGAACC
*
23361030 ATAATCGGAAAGCTCACAAAGAACC
1 ATAATAGG-AAGCTCA-AAAGAACC
23361055 ATA
1 ATA
23361058 TCAAAAAGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 7 0.30
24 7 0.30
25 9 0.39
ACGTcount: A:0.47, C:0.20, G:0.18, T:0.16
Consensus pattern (23 bp):
ATAATAGGAAGCTCAAAAGAACC
Found at i:23361155 original size:25 final size:25
Alignment explanation
Indices: 23361127--23361175 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
23361117 AAATAGCTAA
*
23361127 TTTAA-CGGAAAGTTCATGAAGAGCC
1 TTTAATCGGAAAGCTCAT-AAGAGCC
*
23361152 TTTAATCGGAATGCTCATAAGAGC
1 TTTAATCGGAAAGCTCATAAGAGC
23361176 TAAGGTGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (25 bp):
TTTAATCGGAAAGCTCATAAGAGCC
Found at i:23368621 original size:33 final size:32
Alignment explanation
Indices: 23368574--23368643 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
23368564 AATAATTTAC
*
23368574 TTTTCTGGTGTTTGGATGA-ATCTGTGTAAAATA
1 TTTTCTGGTATTTGGATGATATCT-TG-AAAATA
* * *
23368607 TTTTCTGTTATTTGGCTGATTTCTTGAAAATA
1 TTTTCTGGTATTTGGATGATATCTTGAAAATA
23368639 TTTTC
1 TTTTC
23368644 CTGAATAGCT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
32 11 0.34
33 18 0.56
34 3 0.09
ACGTcount: A:0.21, C:0.09, G:0.19, T:0.51
Consensus pattern (32 bp):
TTTTCTGGTATTTGGATGATATCTTGAAAATA
Found at i:23373504 original size:37 final size:37
Alignment explanation
Indices: 23373454--23373532 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
23373444 TTATTACGAA
* *
23373454 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
23373491 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
23373528 GTCTT
1 GTCTT
23373533 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:23373872 original size:49 final size:47
Alignment explanation
Indices: 23373651--23373906 Score: 413
Period size: 47 Copynumber: 5.4 Consensus size: 47
23373641 CCCTTCGGGA
* * * * * * *
23373651 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23373698 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23373745 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23373792 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23373839 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23373888 CTTATCACATATATACACT
1 CTTATCACATATATACACT
23373907 GTCTTGGCTG
Statistics
Matches: 196, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 149 0.76
49 47 0.24
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23376425 original size:30 final size:30
Alignment explanation
Indices: 23376377--23376436 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
23376367 TTCCCAAGCC
* * *
23376377 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAATATAATTATGCAAAAGTT
* *
23376407 TAGGGGAAAAAATATAATTTTGCCAAAGTT
1 TAGGGGAAAAAATATAATTATGCAAAAGTT
23376437 CGTATTAAAG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAATATAATTATGCAAAAGTT
Done.