Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 72 of 259
Found at i:23385802 original size:18 final size:19
Alignment explanation
Indices: 23385781--23385822 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
23385771 AAAAGTAATT
* *
23385781 TAAAAAG-ATAAATAAAGA
1 TAAAAAGTAAAAATAAAAA
23385799 T-AAAAGTAAAAATAAAAA
1 TAAAAAGTAAAAATAAAAA
23385817 TAAAAA
1 TAAAAA
23385823 TAATAAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (19 bp):
TAAAAAGTAAAAATAAAAA
Found at i:23385810 original size:7 final size:6
Alignment explanation
Indices: 23385790--23385830 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
23385780 TTAAAAAGAT
* *
23385790 AAATAA AGATAA AAGTAA AAATAA AAATAA AAATAA TAAAT
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA -AAAT
23385831 GAAAGTCTTC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (6 bp):
AAATAA
Found at i:23387165 original size:29 final size:30
Alignment explanation
Indices: 23387133--23387189 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
23387123 ACCATGAATA
*
23387133 TAATTAAACTAACAA-ATTCAACCAAAAAC
1 TAATTAAACTAACAAGACTCAACCAAAAAC
*
23387162 TAATTACACTAACAAGACTCAACCAAAA
1 TAATTAAACTAACAAGACTCAACCAAAA
23387190 GCAATCGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 14 0.56
30 11 0.44
ACGTcount: A:0.56, C:0.23, G:0.02, T:0.19
Consensus pattern (30 bp):
TAATTAAACTAACAAGACTCAACCAAAAAC
Found at i:23407682 original size:29 final size:30
Alignment explanation
Indices: 23407650--23407709 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
23407640 TTCCCGAGCC
23407650 TAGGGG-AAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
23407679 TAGGGGCAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
23407709 T
1 T
23407710 GAGTTAAGGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 6 0.23
30 20 0.77
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:23408485 original size:68 final size:64
Alignment explanation
Indices: 23408369--23408627 Score: 233
Period size: 68 Copynumber: 3.9 Consensus size: 64
23408359 TGGATGATAC
** * * *
23408369 AGATAGTATGTAGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGT-GTACAAGAGAGCTAC
1 AGATA-TATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGCTAC
23408433 AAG
64 --G
* *
23408436 ACATTATGATGTAGCTAGGTCACATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTA
1 AGA-TAT-ATGTAGCTAGGTCACATGGGTGGTACTGA-GTGTACACCATGTAGACAAGAGAGCTA
23408500 CG
63 CG
* * *
23408502 AGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAG-G-ACACCATGTAGACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGG-T--A-CTG-AGTGTACACCATGTAGACAAGAGAGC
23408565 TACG
61 TACG
* * * *
23408569 AGATAAAT-TGGCTACGTCACATGGGTGGTACTGAGTGTTCACCATGT-GTACAAGAGAGC
1 AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAG-ACAAGAGAGC
23408628 CGAACTATAT
Statistics
Matches: 160, Mismatches: 19, Indels: 30
0.77 0.09 0.14
Matches are distributed among these distances:
61 2 0.01
62 4 0.03
63 19 0.12
64 20 0.12
65 5 0.03
66 19 0.12
67 37 0.23
68 51 0.32
69 2 0.01
70 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (64 bp):
AGATATATGTAGCTAGGTCACATGGGTGGTACTGAGTGTACACCATGTAGACAAGAGAGCTACG
Found at i:23412136 original size:39 final size:39
Alignment explanation
Indices: 23412082--23412157 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
23412072 TATTCAAAAG
*
23412082 ATGAAACTGAACATGCCGAGCATTTGAGAATCTTATTGC
1 ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATTGC
23412121 ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATT
1 ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATT
23412158 ACAGACTCTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (39 bp):
ATGAAACTGAACATGCCGAGCATTTAAGAATCTTATTGC
Found at i:23415236 original size:40 final size:40
Alignment explanation
Indices: 23415170--23415389 Score: 345
Period size: 40 Copynumber: 5.5 Consensus size: 40
23415160 CGCTCGAATA
* * *
23415170 CCTTCGGAACATAGCTCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
23415210 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
* *
23415250 CCTTCAGGACTTAGCCCGGAACTAGTAACTGGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
23415290 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
23415330 CCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACT--CGCACAAATG
23415371 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23415390 TTATCATCCA
Statistics
Matches: 169, Mismatches: 8, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 1 0.01
40 140 0.83
41 24 0.14
42 4 0.02
ACGTcount: A:0.27, C:0.29, G:0.23, T:0.20
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:23423533 original size:40 final size:40
Alignment explanation
Indices: 23423489--23423704 Score: 294
Period size: 40 Copynumber: 5.4 Consensus size: 40
23423479 CGCTCGAATA
* *
23423489 CCTTCAGGACATAGCCCGGATA-TAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCACACAAATG
* **
23423529 CCTTCGGGACTTAGCCCAGAACTAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
*
23423569 CCTTCGGGACTTAGCCC-GAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
*
23423608 CCTTCGGGACTTAGCGCGGAACTAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
* * *
23423648 CCTTCGGGACTTAGCCTGGAACTAGTCACT-AGCGCAAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCA-CAC-AAATG
23423689 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
23423705 GGTATCATCC
Statistics
Matches: 160, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 39 0.24
40 100 0.62
41 21 0.13
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCACACAAATG
Found at i:23423596 original size:79 final size:79
Alignment explanation
Indices: 23423489--23423704 Score: 283
Period size: 79 Copynumber: 2.7 Consensus size: 79
23423479 CGCTCGAATA
* *
23423489 CCTTCAGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTA
1 CCTTCGGGACTTAGCCC-GA-ACTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTA
**
23423553 GTAACTTGCACAAATG
64 GTAACTCACACAAATG
* * *
23423569 CCTTCGGGACTTAGCCCGAACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCGCGGAACTAGT
1 CCTTCGGGACTTAGCCCGAACTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTAGT
23423634 AACTCACACAAATG
66 AACTCACACAAATG
* * *
23423648 CCTTCGGGACTTAGCCTGGAACTAGTCACT-AGCGCAAAATGCCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC-CGAACTAGTAACTCA-CAC-AAATGCCTTCGGGACTTAGCC
23423705 GGTATCATCC
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 1 0.01
79 71 0.59
80 28 0.23
81 20 0.17
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCCGAACTAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTAGT
AACTCACACAAATG
Found at i:23423661 original size:119 final size:120
Alignment explanation
Indices: 23423489--23423704 Score: 337
Period size: 119 Copynumber: 1.8 Consensus size: 120
23423479 CGCTCGAATA
23423489 CCTTCAGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTAG
1 CCTTCAGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTAG
*
23423554 TAACTTGCAC-AAATGCCTTCGGGACTTAGCCCGAACTAGTAACTCGCACAAATG
66 TAACTAGCACAAAATGCCTTCGGGACTTAGCCCGAACTAGTAACTCGCACAAATG
* * * **
23423608 CCTTCGGGACTTAGCGCGGA-ACTAGTAACTCACACAAATGCCTTCGGGACTTAGCCTGGAACTA
1 CCTTCAGGACATAGCCCGGATA-TAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTA
* *
23423672 GTCACTAGCGCAAAATGCCTTCGGGACTTAGCC
65 GTAACTAGCACAAAATGCCTTCGGGACTTAGCC
23423705 GGTATCATCC
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
118 1 0.01
119 65 0.75
120 21 0.24
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (120 bp):
CCTTCAGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCAGAACTAG
TAACTAGCACAAAATGCCTTCGGGACTTAGCCCGAACTAGTAACTCGCACAAATG
Found at i:23427710 original size:22 final size:24
Alignment explanation
Indices: 23427676--23427719 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
23427666 ATTGGTTTGG
*
23427676 TTTGAGATGATGATAT-GATGAGT
1 TTTGAGATGATGAAATGGATGAGT
*
23427699 TTTGTGAT-ATGAAATGGATGA
1 TTTGAGATGATGAAATGGATGA
23427720 TATTATGATG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.32, C:0.00, G:0.30, T:0.39
Consensus pattern (24 bp):
TTTGAGATGATGAAATGGATGAGT
Found at i:23432058 original size:40 final size:39
Alignment explanation
Indices: 23431974--23432158 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
23431964 TTGAATGATG
* * * *
23431974 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23432014 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
23432054 TCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
23432093 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
23432134 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
23432159 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23432110 original size:79 final size:81
Alignment explanation
Indices: 23431974--23432156 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
23431964 TTGAATGATG
* *
23431974 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
23432038 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
23432053 TTCCGGGCTAAG-CCCGAAGGCATTGGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23432115 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
23432133 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
23432157 TGAACGAGGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 29 0.33
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:23432180 original size:79 final size:79
Alignment explanation
Indices: 23432027--23432181 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
23432017 GGACTAAGAT
* *** *
23432027 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
23432092 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
23432106 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-C
*
23432169 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
23432182 ATTCTGAAGG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.61
80 23 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAA
ATCCGGGTTAAGTC
Found at i:23440866 original size:39 final size:39
Alignment explanation
Indices: 23440823--23441015 Score: 233
Period size: 39 Copynumber: 4.9 Consensus size: 39
23440813 AAAAGTACCG
* *
23440823 AAGTACAATAGAGGCATGTAAGTGCAATCAGGGGTATCA
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* * * *
23440862 AAGTACAACAAGGGCACGTAATTGCAATTAGGGGTATCA
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* * * * *
23440901 AAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCG
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* * * *
23440940 AAGTACAATAGGGGCACGTAAGTGCAATTAAGGGTACCG
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
* *
23440979 AAGTACGATAGGGGCACGTAAGTGCGATCAGGGGTAT
1 AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTAT
23441016 AATTTTATAA
Statistics
Matches: 131, Mismatches: 23, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 131 1.00
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (39 bp):
AAGTACAATAGGGGCACGTAAGTGCAATCAGGGGTATCA
Found at i:23440923 original size:19 final size:20
Alignment explanation
Indices: 23440901--23441012 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 20
23440891 AGGGGTATCA
23440901 AAGTACGA-CAGGGGCACGT
1 AAGTACGATCAGGGGCACGT
* *
23440920 AAGTGCGATCAGGGGTACCG-
1 AAGTACGATCAGGGGCA-CGT
*
23440940 AAGTACAAT-AGGGGCACGT
1 AAGTACGATCAGGGGCACGT
* * * * *
23440959 AAGTGCAATTAAGGGTACCG-
1 AAGTACGATCAGGGGCA-CGT
23440979 AAGTACGAT-AGGGGCACGT
1 AAGTACGATCAGGGGCACGT
*
23440998 AAGTGCGATCAGGGG
1 AAGTACGATCAGGGG
23441013 TATAATTTTA
Statistics
Matches: 73, Mismatches: 13, Indels: 13
0.74 0.13 0.13
Matches are distributed among these distances:
18 4 0.05
19 34 0.47
20 31 0.42
21 4 0.05
ACGTcount: A:0.31, C:0.17, G:0.37, T:0.15
Consensus pattern (20 bp):
AAGTACGATCAGGGGCACGT
Found at i:23440955 original size:78 final size:78
Alignment explanation
Indices: 23440817--23441014 Score: 261
Period size: 78 Copynumber: 2.5 Consensus size: 78
23440807 GCTATCAAAA
* * * * * * *
23440817 GTACCGAAGTACAATAGAGGCATGTAAGTGCAATCAGGGGTATCAAAGTACAACAAGGGCACGTA
1 GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTACAACAAGGGCACGTA
* *
23440882 ATTGCAATTAGGG
66 AGTGCAATTAAGG
* * * *
23440895 GTATCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCGAAGTACAATAGGGGCACGTA
1 GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTACAACAAGGGCACGTA
23440960 AGTGCAATTAAGG
66 AGTGCAATTAAGG
* *
23440973 GTACCGAAGTACGATAGGGGCACGTAAGTGCGATCAGGGGTA
1 GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTA
23441015 TAATTTTATA
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
78 104 1.00
ACGTcount: A:0.34, C:0.16, G:0.32, T:0.18
Consensus pattern (78 bp):
GTACCAAAGTACGACAGGGGCACGTAAGTGCGATCAGGGGTACCAAAGTACAACAAGGGCACGTA
AGTGCAATTAAGG
Found at i:23442670 original size:15 final size:16
Alignment explanation
Indices: 23442650--23442679 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23442640 GAAAATTGCC
23442650 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
23442665 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
23442680 TGGAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:23446189 original size:15 final size:16
Alignment explanation
Indices: 23446169--23446198 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
23446159 GAAAATTGCC
23446169 AAAATGGG-CTAAATA
1 AAAATGGGACTAAATA
23446184 AAAATGGGACTAAAT
1 AAAATGGGACTAAAT
23446199 TGGAATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (16 bp):
AAAATGGGACTAAATA
Found at i:23450775 original size:47 final size:48
Alignment explanation
Indices: 23450632--23450801 Score: 158
Period size: 47 Copynumber: 3.6 Consensus size: 48
23450622 GGCGAGGGCT
* * * * * *
23450632 AGTGTAAGA-CATGTCTGGGACA-AGCATCGGCCACGAGACG-TAAGCC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGAT-AGTC
*
23450678 AATGTAAGA-CATGTCTAGGACAT-GCATCGACTACGAGAGGATAGTC
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGATAGTC
* * *
23450724 AGTGTAAGACCACGTCTAGGACATGGCATCGACT-TGAGA-TATGAG-C
1 AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGAT-AGTC
*
23450770 TAGTGTAAGACCGTGTCTAGGACATGGCATCG
1 -AGTGTAAGACCATGTCTAGGACATGGCATCG
23450802 GCACCTTACC
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
46 48 0.45
47 49 0.46
48 9 0.08
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.21
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTAGGACATGGCATCGACTACGAGAGGATAGTC
Found at i:23450793 original size:140 final size:141
Alignment explanation
Indices: 23450540--23450803 Score: 313
Period size: 140 Copynumber: 1.9 Consensus size: 141
23450530 TGTGAGCTAG
* * * * * *
23450540 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAATCAGTGCAAGGCCATGTCTGGTA
1 TGTAAGACATGTCTAGGACATGCATCGACCACATGAGGAGAATCAGTGCAAGACCACGTCTGGTA
* * *
23450605 CATGGCATCGACATTGAGGCGAGGGCTAGTGTAAGACATGTCTGGGACA-AGCATCGGCCACGAG
66 CATGGCATCGACATTGAGGAGAGAGCTAGTGTAAGACATGTCTAGGACATAGCATCGGCCACGAG
23450669 ACGTAAGCCAA
131 ACGTAAGCCAA
* * * *
23450680 TGTAAGACATGTCTAGGACATGCATCGACTACGA-GAGGATAGTCAGTGTAAGACCACGTCTAGG
1 TGTAAGACATGTCTAGGACATGCATCGACCAC-ATGAGGAGAATCAGTGCAAGACCACGTCT-GG
* * *
23450744 -ACATGGCATCGAC-TTGA-GATATGAGCTAGTGTAAGACCGTGTCTAGGACATGGCATCGGC
64 TACATGGCATCGACATTGAGGAGA-GAGCTAGTGTAAGA-CATGTCTAGGACATAGCATCGGC
23450804 ACCTTACCTT
Statistics
Matches: 103, Mismatches: 16, Indels: 9
0.80 0.12 0.07
Matches are distributed among these distances:
138 2 0.02
139 17 0.17
140 73 0.71
141 11 0.11
ACGTcount: A:0.29, C:0.20, G:0.30, T:0.21
Consensus pattern (141 bp):
TGTAAGACATGTCTAGGACATGCATCGACCACATGAGGAGAATCAGTGCAAGACCACGTCTGGTA
CATGGCATCGACATTGAGGAGAGAGCTAGTGTAAGACATGTCTAGGACATAGCATCGGCCACGAG
ACGTAAGCCAA
Found at i:23458246 original size:46 final size:45
Alignment explanation
Indices: 23458196--23458312 Score: 128
Period size: 46 Copynumber: 2.5 Consensus size: 45
23458186 GACAAGGGCT
* * *
23458196 AGTGTAAGATATGTTTGGAACATGCATTGGCCACGAGACG-TAAGCC
1 AGTGTAAGACATGTTTGG-ACATGCATTAGCCACGAGAGGAT-AGCC
* * *
23458242 AGTGTAAGACATGTCTAGGACATGCATTAGCTACGAGAGGATAGTC
1 AGTGTAAGACATGT-TTGGACATGCATTAGCCACGAGAGGATAGCC
23458288 AGTGTAAGACCATGTTTGGGACATG
1 AGTGTAAGA-CATGTTT-GGACATG
23458313 GCATCGGCTT
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
46 44 0.73
47 16 0.27
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (45 bp):
AGTGTAAGACATGTTTGGACATGCATTAGCCACGAGAGGATAGCC
Found at i:23458357 original size:47 final size:48
Alignment explanation
Indices: 23458145--23458367 Score: 133
Period size: 47 Copynumber: 4.8 Consensus size: 48
23458135 ACATTATGAG
* * * ** *
23458145 AGCCAGT-TAAGACCATCTCTGGGACATGGCATCGGC-ATTGAGACAAG
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTA-CGAGAGGAT
* * * * * * *
23458192 GGCTAGTGTAAGA-TATGT-TTGGAACAT-GCATTGGCCACGAGACG-T
1 AGCCAGTGTAAGACCATGTCTAGG-ACATGGCATCGGCTACGAGAGGAT
**
23458237 AAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATTAGCTACGAGAGGAT
1 -AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGAGGAT
* * * * *
23458284 AGTCAGTGTAAGACCATGTTTGGGACATGGCATCGGCT-TGAGA-TAT
1 AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGAGGAT
* * *
23458330 GAGCCAGTGTAAGACCGTGTCTAGGACAAGGCACCGGC
1 -AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGC
23458368 ACCTTACCTT
Statistics
Matches: 138, Mismatches: 29, Indels: 18
0.75 0.16 0.10
Matches are distributed among these distances:
46 62 0.45
47 64 0.46
48 12 0.09
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCTACGAGAGGAT
Found at i:23468015 original size:20 final size:23
Alignment explanation
Indices: 23467979--23468022 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
23467969 GCTATATTAG
23467979 AAATGCTAACTAAAATGT-CTTA
1 AAATGCTAACTAAAATGTACTTA
23468001 AAATG-TAAC-AAAATGTACTTA
1 AAATGCTAACTAAAATGTACTTA
23468022 A
1 A
23468023 GTGCAAGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.50, C:0.11, G:0.09, T:0.30
Consensus pattern (23 bp):
AAATGCTAACTAAAATGTACTTA
Found at i:23474771 original size:29 final size:29
Alignment explanation
Indices: 23474739--23474812 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 29
23474729 CTAAAGGATT
*
23474739 GCCTTTGTGGCGATCTCTGTTAAAAGGAA
1 GCCTTTGTGGCGATCTCTATTAAAAGGAA
* * *
23474768 GCCTTTATGGTGATCTCTATTATAAGGAA
1 GCCTTTGTGGCGATCTCTATTAAAAGGAA
* *
23474797 GCCCTTGTGACGATCT
1 GCCTTTGTGGCGATCT
23474813 GATCGACTAT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.34
Consensus pattern (29 bp):
GCCTTTGTGGCGATCTCTATTAAAAGGAA
Found at i:23475953 original size:20 final size:22
Alignment explanation
Indices: 23475920--23475959 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
23475910 TCAAGCAGCG
*
23475920 AAATTAATGCAATAAGATAGAA
1 AAATTAATGCAATAAAATAGAA
23475942 AAATTAA-G-AATAAAATAG
1 AAATTAATGCAATAAAATAG
23475960 TCTAGGATTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 1 0.06
22 7 0.41
ACGTcount: A:0.62, C:0.03, G:0.12, T:0.23
Consensus pattern (22 bp):
AAATTAATGCAATAAAATAGAA
Found at i:23479370 original size:15 final size:15
Alignment explanation
Indices: 23479350--23479380 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23479340 CTTGTCATGC
*
23479350 CATCGTTTGGTTTTT
1 CATCGTTTCGTTTTT
23479365 CATCGTTTCGTTTTT
1 CATCGTTTCGTTTTT
23479380 C
1 C
23479381 CTTGTAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.19, G:0.16, T:0.58
Consensus pattern (15 bp):
CATCGTTTCGTTTTT
Found at i:23486121 original size:17 final size:17
Alignment explanation
Indices: 23486074--23486125 Score: 59
Period size: 19 Copynumber: 2.9 Consensus size: 17
23486064 ATCCAACAAA
23486074 GCCCGGTAAATGATAAT
1 GCCCGGTAAATGATAAT
** *
23486091 GCCTGCAATAAATGATATT
1 GCC--CGGTAAATGATAAT
23486110 GCCCGGTAAATGATAA
1 GCCCGGTAAATGATAA
23486126 ATGGTAAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
17 13 0.48
19 14 0.52
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (17 bp):
GCCCGGTAAATGATAAT
Found at i:23492141 original size:29 final size:29
Alignment explanation
Indices: 23492107--23492192 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 29
23492097 GCGTTATGGG
23492107 TATCTCTGTGAAAATGATGCCTTTGTGGC
1 TATCTCTGTGAAAATGATGCCTTTGTGGC
* * *
23492136 TATCTCAGTG-AAATGA-GCATTGTTATGGC
1 TATCTCTGTGAAAATGATGC-CT-TTGTGGC
* *
23492165 TATCTCTGTTAAAAGGATGCCTTTGTGG
1 TATCTCTGTGAAAATGATGCCTTTGTGG
23492193 TTATTTTTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.04
28 7 0.16
29 28 0.62
30 6 0.13
31 2 0.04
ACGTcount: A:0.23, C:0.15, G:0.24, T:0.37
Consensus pattern (29 bp):
TATCTCTGTGAAAATGATGCCTTTGTGGC
Found at i:23500558 original size:106 final size:106
Alignment explanation
Indices: 23500427--23500637 Score: 377
Period size: 106 Copynumber: 2.0 Consensus size: 106
23500417 TAGGAAAAGT
*
23500427 CTGATGAGATAGCTCATTGCTATATGTTGGTAAACATGACCAACACTCAGTATAAACAAATAGAG
1 CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCAGTATAAACAAATAGAG
*
23500492 AGCTATAAGACTGATAAAGTGATTCTAGATAAGCTAGAAGC
66 AGCTATAAGACTGATAAAGTGATTCCAGATAAGCTAGAAGC
* *
23500533 CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCGGTATAATCAAATAGAG
1 CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCAGTATAAACAAATAGAG
*
23500598 AGCTATAAGACTGCTAAAGTGATTCCAGATAAGCTAGAAG
66 AGCTATAAGACTGATAAAGTGATTCCAGATAAGCTAGAAG
23500638 ACATGTTCAG
Statistics
Matches: 100, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
106 100 1.00
ACGTcount: A:0.38, C:0.16, G:0.20, T:0.25
Consensus pattern (106 bp):
CTGATGAGATAGCTCATTGCTATATGTTGGCAAACATGACCAACACTCAGTATAAACAAATAGAG
AGCTATAAGACTGATAAAGTGATTCCAGATAAGCTAGAAGC
Found at i:23502586 original size:16 final size:17
Alignment explanation
Indices: 23502555--23502587 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23502545 AAACTCATTT
*
23502555 TTATTGTTTCTTAAAAA
1 TTATTGTATCTTAAAAA
23502572 TTATTGTAT-TTAAAAA
1 TTATTGTATCTTAAAAA
23502588 ATCCTTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.52
Consensus pattern (17 bp):
TTATTGTATCTTAAAAA
Found at i:23503647 original size:37 final size:37
Alignment explanation
Indices: 23503542--23503648 Score: 126
Period size: 37 Copynumber: 2.9 Consensus size: 37
23503532 ATTTTCTGTA
* * *
23503542 GGCATGCTTTACATGCGAATCAAAATATCAAAAATAT
1 GGCATGCTTAACATGAGAATCAAAATATCAGAAATAT
** *
23503579 TACATGCTTAACATGCA-AATCAAAATTTCAGAAATAT
1 GGCATGCTTAACATG-AGAATCAAAATATCAGAAATAT
* *
23503616 GGCATGCTTAACATGAGAATTAGAATATCAGAA
1 GGCATGCTTAACATGAGAATCAAAATATCAGAA
23503649 TAGTAACATA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
36 1 0.02
37 56 0.98
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (37 bp):
GGCATGCTTAACATGAGAATCAAAATATCAGAAATAT
Found at i:23507230 original size:40 final size:40
Alignment explanation
Indices: 23507171--23507354 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
23507161 TATTCGAATG
* *
23507171 ATATCCGGGCTAAGTTCCGAAGGCTTTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
* * * *
23507211 ATATCAGGACTAAGATCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAG-TGACT
* * *
23507251 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
*
23507291 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTATGCTAGTGACT
*
23507331 ATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGATCCGAAGGC
23507355 CTTGTGCGAG
Statistics
Matches: 124, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.98
41 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTATGCTAGTGACT
Found at i:23510840 original size:20 final size:20
Alignment explanation
Indices: 23510815--23510859 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
23510805 AGGGACTAAA
* *
23510815 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
23510835 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
23510855 ATGAA
1 ATGAA
23510860 TACATGCACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:23518210 original size:35 final size:35
Alignment explanation
Indices: 23518169--23518238 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
23518159 CCGTATACAG
*
23518169 GTTTGTGGTGGTATTTATAGATGATATTTTGGTTT
1 GTTTGTGGTGGTATTTATAGATGATATGTTGGTTT
*
23518204 GTTTGTGGTGGTATTTATTGATGATATGTTGGTTT
1 GTTTGTGGTGGTATTTATAGATGATATGTTGGTTT
23518239 ACTCTCAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.16, C:0.00, G:0.30, T:0.54
Consensus pattern (35 bp):
GTTTGTGGTGGTATTTATAGATGATATGTTGGTTT
Found at i:23522937 original size:24 final size:22
Alignment explanation
Indices: 23522917--23522959 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
23522907 AAGAAAATGA
23522917 AGGAGAGAAAGGAGAGGAAAAT
1 AGGAGAGAAAGGAGAGGAAAAT
23522939 AGGAGAGAAAGGAGAGGAAAA
1 AGGAGAGAAAGGAGAGGAAAA
23522960 GAGCTCTTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.42, T:0.02
Consensus pattern (22 bp):
AGGAGAGAAAGGAGAGGAAAAT
Found at i:23525274 original size:43 final size:43
Alignment explanation
Indices: 23525162--23525279 Score: 155
Period size: 43 Copynumber: 2.7 Consensus size: 43
23525152 TTATATTCAG
* * ** *
23525162 GCCTTCATGCCTAGCAGGCTTAGTGCCAGTGATGTGTATTCGG
1 GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGATGTGTATTCGA
* * *
23525205 GCCTTCGGGCCTAGCAGGCTTCATGCTGGTGATGTGTATTCTA
1 GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGATGTGTATTCGA
*
23525248 GCCTTCGTGCCTAGCAGGCGTAATGCTGGTGA
1 GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGA
23525280 AATGATATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.15, C:0.24, G:0.31, T:0.30
Consensus pattern (43 bp):
GCCTTCGTGCCTAGCAGGCTTAATGCTGGTGATGTGTATTCGA
Found at i:23525656 original size:45 final size:42
Alignment explanation
Indices: 23525586--23525696 Score: 125
Period size: 45 Copynumber: 2.5 Consensus size: 42
23525576 TTGTTGACTT
* * *
23525586 AATTATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTG
1 AATTATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTG
**
23525628 AGATACTATTCGGGCCTTCGAGCCTAGCAGGCTATAATACCGGTG
1 A-AT--TATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTG
23525673 AATTGATATCGGGCC-TCGAGCCTA
1 AATT-AT-TCGGGCCTTCGAGCCTA
23525697 ACAGGTGAAA
Statistics
Matches: 59, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
42 2 0.03
43 13 0.22
44 9 0.15
45 35 0.59
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (42 bp):
AATTATTCGGGCCTTCGAGCCTAGCAAACTATAATACCGGTG
Found at i:23527248 original size:39 final size:40
Alignment explanation
Indices: 23527194--23527278 Score: 145
Period size: 39 Copynumber: 2.1 Consensus size: 40
23527184 TCCTTTTTTA
23527194 TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTC-
1 TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTCT
* *
23527233 TTCTTTTAATTACCAAATGACCAAAATGCCTTTAGGGTCT
1 TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTCT
23527273 TTCTTT
1 TTCTTT
23527279 AAAATTTTTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
39 37 0.86
40 6 0.14
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (40 bp):
TTCTTTTAATTACCAAATGACAAAAATGCCCTTAGGGTCT
Found at i:23527832 original size:20 final size:20
Alignment explanation
Indices: 23527807--23527845 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23527797 AGGGACTAAA
* *
23527807 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
23527827 ATGAAAAATTCTAAAATTT
1 ATGAAAAATTCTAAAATTT
23527846 TATAAATATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:23530821 original size:27 final size:27
Alignment explanation
Indices: 23530770--23530870 Score: 112
Period size: 27 Copynumber: 3.7 Consensus size: 27
23530760 CTCATATCTG
* * * *
23530770 TAGGCTAGTATTATTGAAATACCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
*
23530797 TAGCATAGAATTACTGAAATGCCCCTA
1 TAGGATAGAATTACTGAAATGCCCCTA
* ** *
23530824 TAGGATAGAATTATTGAAATGTACCTG
1 TAGGATAGAATTACTGAAATGCCCCTA
*
23530851 TAGGGTAGAATTACTGAAAT
1 TAGGATAGAATTACTGAAAT
23530871 ACCCTTGGTT
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (27 bp):
TAGGATAGAATTACTGAAATGCCCCTA
Found at i:23530889 original size:27 final size:27
Alignment explanation
Indices: 23530859--23531206 Score: 244
Period size: 27 Copynumber: 12.9 Consensus size: 27
23530849 TGTAGGGTAG
* *
23530859 AATTACTGAAATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
* *
23530886 AATTACTG-AATACCCTTGGTTTACAA
1 AATTACTGAAATACCCTTGATTTGCAA
** *
23530912 AATTACCAAAATACCCTCT-ATTAGCAA
1 AATTACTGAAATACCCT-TGATTTGCAA
** * *
23530939 AATTACAAAAATACCCTTGGTTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
** *
23530966 AATTACCAAAATACCCTTGATTTGTAA
1 AATTACTGAAATACCCTTGATTTGCAA
* * * ***
23530993 AATTA-TCAAAATACCTTTAATTTTTGA
1 AATTACT-GAAATACCCTTGATTTGCAA
* *
23531020 AATTA-TCGAAATACCCTCGATTTGTAA
1 AATTACT-GAAATACCCTTGATTTGCAA
*
23531047 AATTA-TCGAAATACCCTTGATTTGGAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* * *
23531074 AATTATTGAAATACCTTTGATTTGGAA
1 AATTACTGAAATACCCTTGATTTGCAA
* *
23531101 AATTA-TAGAAATACCCCTGATTTACAA
1 AATTACT-GAAATACCCTTGATTTGCAA
**
23531128 AATTACAAAAATACCCTTGACTTT-CAAA
1 AATTACTGAAATACCCTTGA-TTTGC-AA
* * *
23531156 AATTA-TAGAAATACCATTGGTTTGGAA
1 AATTACT-GAAATACCCTTGATTTGCAA
* * *
23531183 AATTACCGAGATACCCTTGGTTTG
1 AATTACTGAAATACCCTTGATTTG
23531207 TAGATTTACC
Statistics
Matches: 269, Mismatches: 40, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
26 26 0.10
27 221 0.82
28 22 0.08
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGATTTGCAA
Found at i:23530970 original size:54 final size:54
Alignment explanation
Indices: 23530867--23531206 Score: 276
Period size: 54 Copynumber: 6.3 Consensus size: 54
23530857 AGAATTACTG
* * * * *
23530867 AAATACCCTTGGTTTACAAAATTACTG-AATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTTGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* * * *
23530920 AAATACCCTCT-ATTAGCAAAATTACAAAAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCCT-TGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* * * *** * *
23530974 AAATACCCTTGATTTGTAAAATTATCA-AAATACCTTTAATTTTTGAAATTATCG
1 AAATACCCTTGATTTGCAAAATTA-CAGAAATACCCTTGATTTGCAAAATTACCA
* * * ***
23531028 AAATACCCTCGATTTGTAAAATTATC-GAAATACCCTTGATTTGGAAAATTATTG
1 AAATACCCTTGATTTGCAAAATTA-CAGAAATACCCTTGATTTGCAAAATTACCA
* * * * * *
23531082 AAATACCTTTGATTTGGAAAATTATAGAAATACCCCTGATTTACAAAATTACAA
1 AAATACCCTTGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* * * * *
23531136 AAATACCCTTGACTTT-CAAAAATTATAGAAATACCATTGGTTTGGAAAATTACCG
1 AAATACCCTTGA-TTTGC-AAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
* *
23531191 AGATACCCTTGGTTTG
1 AAATACCCTTGATTTG
23531207 TAGATTTACC
Statistics
Matches: 234, Mismatches: 44, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
53 21 0.09
54 168 0.72
55 45 0.19
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (54 bp):
AAATACCCTTGATTTGCAAAATTACAGAAATACCCTTGATTTGCAAAATTACCA
Found at i:23531023 original size:81 final size:81
Alignment explanation
Indices: 23530859--23531228 Score: 304
Period size: 81 Copynumber: 4.6 Consensus size: 81
23530849 TGTAGGGTAG
* ** ** * *
23530859 AATTACTGAAATACCCTTGGTTTACAAAATTA-CTGAATACCCTTGGTTT-ACAAAATTACCAAA
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGA-AAAATTATCAAA
* * *
23530922 ATACCCTCTA-TTAGCAA
65 ATA-CCTTTATTTTGGAA
* *
23530939 AATTACAAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTATCAAAA
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGAAAAATTATCAAAA
*
23531004 TACCTTTAATTTTTG-A
66 TACCTTT-ATTTTGGAA
* * * * * **
23531020 AATTATC-GAAATACCCTCGATTTGTAAAATTATCGAAATACCCTTGATTTGGAAAATTATTGAA
1 AATTA-CAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGAAAAATTATCAAA
23531084 ATACCTTTGA-TTTGGAA
65 ATACCTTT-ATTTTGGAA
* * * ** * *
23531101 AATTATAGAAATACCCCTGATTTACAAAATTACAAAAATACCCTTGACTTTCAAAAATTAT-AGA
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGA-TTTGAAAAATTATCA-A
* **
23531165 AATACCATTGGTTTGGAA
64 AATACCTTTATTTTGGAA
* * * * * *
23531183 AATTACCGAGATACCCTTGGTTTGTAGATTTACCAATACACCCTTG
1 AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTG
23531229 TAGGGTGAAA
Statistics
Matches: 232, Mismatches: 48, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
80 36 0.16
81 132 0.57
82 64 0.28
ACGTcount: A:0.39, C:0.17, G:0.11, T:0.34
Consensus pattern (81 bp):
AATTACAGAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGAAAAATTATCAAAA
TACCTTTATTTTGGAA
Found at i:23531514 original size:41 final size:41
Alignment explanation
Indices: 23531457--23531578 Score: 172
Period size: 41 Copynumber: 3.0 Consensus size: 41
23531447 GAAGGAAGAA
* *
23531457 ATTGAGAATCGCATGGTTACTTGACGATCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
*
23531498 ATTGAGGATCGCATGGTTGCTTGACGACCGTGGATCCACCG
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
* * * * *
23531539 ATTAAGGATTGTATGGTTGCTTGACGTTTGTGGATCCACC
1 ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACC
23531579 TGTGGCTTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (41 bp):
ATTGAGGATCGCATGGTTGCTTGACGATCGTGGATCCACCG
Found at i:23531773 original size:22 final size:22
Alignment explanation
Indices: 23531720--23531785 Score: 62
Period size: 22 Copynumber: 3.0 Consensus size: 22
23531710 AGGAAATTAT
* * *
23531720 CCTGATTATGGCTTTGCGACAA
1 CCTGATTATGGCTCTGTGCCAA
*
23531742 CCT-ACATATGGCTCTGTGCCAA
1 CCTGA-TTATGGCTCTGTGCCAA
* *
23531764 CCTGATTATGGTTGTGTGCCAA
1 CCTGATTATGGCTCTGTGCCAA
23531786 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.21, C:0.24, G:0.23, T:0.32
Consensus pattern (22 bp):
CCTGATTATGGCTCTGTGCCAA
Found at i:23532005 original size:22 final size:22
Alignment explanation
Indices: 23531980--23532028 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
23531970 TGCTGTGATG
23531980 TTTACGGCT-ATGTGCTGTCCTA
1 TTTACGG-TGATGTGCTGTCCTA
*
23532002 TTTACGGTGATGTGCTGTCCTG
1 TTTACGGTGATGTGCTGTCCTA
23532024 TTTAC
1 TTTAC
23532029 AGCCTTGAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.12, C:0.20, G:0.24, T:0.43
Consensus pattern (22 bp):
TTTACGGTGATGTGCTGTCCTA
Found at i:23532922 original size:13 final size:13
Alignment explanation
Indices: 23532904--23532928 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23532894 CAAAGTTTGT
23532904 AAAGAAATGATGA
1 AAAGAAATGATGA
23532917 AAAGAAATGATG
1 AAAGAAATGATG
23532929 GAAATCCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (13 bp):
AAAGAAATGATGA
Found at i:23536142 original size:45 final size:44
Alignment explanation
Indices: 23536073--23536469 Score: 266
Period size: 45 Copynumber: 8.8 Consensus size: 44
23536063 GATCGGAGGG
* * * *
23536073 TGCCATGGTGTCTTTCAACTATGGTCTTATTTATTCTTAACTTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATT-TTATCGTGA
* *
23536118 TGCCATAGTGTCTTTCAACCATGGTCTTATTCATTTTCCATCGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTT--ATCGTGA
* * *
23536164 TGCCATAGTGTCTTTCAATTATTGTCTTATTCATTTTCCTTCAGT--
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTT--ATC-GTGA
* *
23536209 TGCCATAGTGTCTTCCAACTATGGTCTTATTCATTTGATTCGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTA-TCGTGA
* * ** * *** *
23536254 TGCCATAGTGTCTTTTAGCTACAGTCTTACTCGATAAAATTGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTC-ATTTTATCGTGA
* * ** * ***
23536299 TGCCATACTATCTTTCAGTTATGGTCTTACTTGATAGAATCGTGA
1 TGCCATAGTGTCTTTCAACTATGGTCTTA-TTCATTTTATCGTGA
** * * * * *
23536344 TGCCATAACGCCTTTCAACTATGGTCTTACTC-GTTTCTGGT-A
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTATCGTGA
* * *
23536386 TGGTTCCATAGTGTCTTTCAACTATGGTCTTATTTA-TTT-CCGGTATA
1 T-G--CCATAGTGTCTTTCAACTATGGTCTTATTCATTTTATC-GT-GA
*
23536433 GTGCCATAGTGTCTTTCAACTATGGTCTTAATCATTT
1 -TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTT
23536470 CCTTCAAGCC
Statistics
Matches: 277, Mismatches: 58, Indels: 33
0.75 0.16 0.09
Matches are distributed among these distances:
42 2 0.01
43 6 0.02
44 5 0.02
45 211 0.76
46 48 0.17
47 4 0.01
48 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.16, T:0.43
Consensus pattern (44 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTATCGTGA
Found at i:23536233 original size:91 final size:90
Alignment explanation
Indices: 23536073--23536268 Score: 245
Period size: 91 Copynumber: 2.2 Consensus size: 90
23536063 GATCGGAGGG
* * *
23536073 TGCCATGGTGTCTTTCAACTATGGTCTTATTTATTCTTAACTTGATGCCATAGTGTCTTTCAACC
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTCTTAACTTGATGCCATAGTGTCTTCCAACC
*
23536138 ATGGTCTTATTCATTTTCCA-TCGTGT
66 ATGGTCTTATTCA-TTT-CATTCGTGA
* * * *
23536164 TGCCATAGTGTCTTTCAATTATTGTCTTATTCATT-TT-CCTTCAGTTGCCATAGTGTCTTCCAA
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTCTTAACTT--GATGCCATAGTGTCTTCCAA
* *
23536227 CTATGGTCTTATTCATTTGATTCGTGA
64 CCATGGTCTTATTCATTTCATTCGTGA
23536254 TGCCATAGTGTCTTT
1 TGCCATAGTGTCTTT
23536269 TAGCTACAGT
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
89 4 0.04
90 25 0.27
91 63 0.68
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (90 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTCTTAACTTGATGCCATAGTGTCTTCCAACC
ATGGTCTTATTCATTTCATTCGTGA
Found at i:23538071 original size:27 final size:27
Alignment explanation
Indices: 23538025--23538076 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
23538015 CTTTAGGGCA
**
23538025 AACCTTTTAAAGGATGCCTTCGTGGTG
1 AACCTTTTAAAGGACACCTTCGTGGTG
*
23538052 AACCTTTTAAAGGACACCTTTGTGG
1 AACCTTTTAAAGGACACCTTCGTGG
23538077 CGAAACGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (27 bp):
AACCTTTTAAAGGACACCTTCGTGGTG
Found at i:23538090 original size:27 final size:27
Alignment explanation
Indices: 23538060--23538128 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
23538050 TGAACCTTTT
*
23538060 AAAGGACACCTTTGTGGCG-AAACGCTG
1 AAAGGAAACCTTTGTGG-GAAAACGCTG
*
23538087 AAAGGAAAACCTTTGTGGGAAAATGCTG
1 AAAGG-AAACCTTTGTGGGAAAACGCTG
23538115 AAAGGAAAACCTTT
1 AAAGG-AAACCTTT
23538129 ATGGCCAGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 6 0.16
28 32 0.84
ACGTcount: A:0.38, C:0.16, G:0.26, T:0.20
Consensus pattern (27 bp):
AAAGGAAACCTTTGTGGGAAAACGCTG
Found at i:23538103 original size:28 final size:29
Alignment explanation
Indices: 23538067--23538133 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 29
23538057 TTTAAAGGAC
23538067 ACCTTTGTGGCG-AAACGCTGAAAGGAAA
1 ACCTTTGTGGCGAAAACGCTGAAAGGAAA
*
23538095 ACCTTTGTGG-GAAAATGCTGAAAGGAAA
1 ACCTTTGTGGCGAAAACGCTGAAAGGAAA
*
23538123 ACCTTTATGGC
1 ACCTTTGTGGC
23538134 CAGTACTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
27 1 0.03
28 34 0.97
ACGTcount: A:0.34, C:0.16, G:0.27, T:0.22
Consensus pattern (29 bp):
ACCTTTGTGGCGAAAACGCTGAAAGGAAA
Found at i:23543504 original size:30 final size:30
Alignment explanation
Indices: 23543470--23543531 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
23543460 ACTAAACTTA
23543470 ATTATCTAATAATCTAAGAACGCGACAGAG
1 ATTATCTAATAATCTAAGAACGCGACAGAG
23543500 ATTATCTAATAATCTAAGAACGCGACAGAG
1 ATTATCTAATAATCTAAGAACGCGACAGAG
23543530 AT
1 AT
23543532 AAAAGAATCG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24
Consensus pattern (30 bp):
ATTATCTAATAATCTAAGAACGCGACAGAG
Found at i:23545994 original size:40 final size:40
Alignment explanation
Indices: 23545948--23546151 Score: 177
Period size: 40 Copynumber: 5.1 Consensus size: 40
23545938 CAGGATTTAA
* *
23545948 CCGGATATAGCT-ACTCACTCGAATACCTTCGGGACATAGC
1 CCGGATATAG-TAACTCACACAAATACCTTCGGGACATAGC
* * *
23545988 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTCACACAAATACCTTCGGGACATAGC
** * *
23546028 CC-GA-ACTAGTAACTCGTACAAATGCCTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCACACAAATACCTTCGGGACATAGC
* * *
23546067 CCGGA-ACTAGTAACTCGCACAACTGA-CTTCGGGACTTAGC
1 CCGGATA-TAGTAACTCACACAAAT-ACCTTCGGGACATAGC
* * * *
23546107 CCGGA-ACTAGTAACTCGCACAAATGCCTTCGGAACTTAGC
1 CCGGATA-TAGTAACTCACACAAATACCTTCGGGACATAGC
23546147 CCGGA
1 CCGGA
23546152 ACTAGTCACT
Statistics
Matches: 147, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
38 1 0.01
39 37 0.25
40 109 0.74
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
CCGGATATAGTAACTCACACAAATACCTTCGGGACATAGC
Found at i:23546150 original size:80 final size:80
Alignment explanation
Indices: 23545973--23546191 Score: 327
Period size: 79 Copynumber: 2.7 Consensus size: 80
23545963 CACTCGAATA
*
23545973 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-GAACTA
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTA
*
23546036 GTAACTCGTACAAATG
65 GTAACTCGCACAAATG
* *
23546052 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAACTGACTTCGGGACTTAGCCCGGAACTAG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
23546117 TAACTCGCACAAATG
66 TAACTCGCACAAATG
* * *
23546132 CCTTCGGAACTTAGCCCGGAACTAGTCACTAGCGCA-AAATGCCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACT--CGCACAAATGCCTTCGGGACTTAGCCCGG
23546192 TTATCATCCA
Statistics
Matches: 127, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
78 1 0.01
79 52 0.41
80 49 0.39
81 21 0.17
82 4 0.03
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (80 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAG
TAACTCGCACAAATG
Found at i:23546152 original size:40 final size:40
Alignment explanation
Indices: 23545973--23546191 Score: 327
Period size: 40 Copynumber: 5.5 Consensus size: 40
23545963 CACTCGAATA
*
23545973 CCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGA-ACTAGTAACTCGCACAAATG
*
23546013 CCTTCGGGACTTAGCCC-GAACTAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
23546052 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAACTG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
*
23546092 ACTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
* *
23546132 CCTTCGGAACTTAGCCCGGAACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGAACTAGTAACT--CGCACAAATG
*
23546173 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23546192 TTATCATCCA
Statistics
Matches: 164, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
38 1 0.01
39 36 0.22
40 101 0.62
41 22 0.13
42 4 0.02
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAACTAGTAACTCGCACAAATG
Found at i:23561062 original size:27 final size:27
Alignment explanation
Indices: 23561032--23561143 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
23561022 ATGGTAGTTT
* *
23561032 TACCCCACCAGGGTATCTCGGTAATTC
1 TACCCCACCAGGGTATTTCAGTAATTC
* *
23561059 TACCCTA-CAGGGGTATTTCAGTATTTC
1 TACCCCACCA-GGGTATTTCAGTAATTC
* *
23561086 TACCCCACAAGGGTATTTCGGTAATTC
1 TACCCCACCAGGGTATTTCAGTAATTC
* *
23561113 T-CTCCTCCAGCGGTATTTCAGTAATTC
1 TACCCCACCAG-GGTATTTCAGTAATTC
23561140 TACC
1 TACC
23561144 TTACAAGGGT
Statistics
Matches: 68, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
26 8 0.12
27 58 0.85
28 2 0.03
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (27 bp):
TACCCCACCAGGGTATTTCAGTAATTC
Found at i:23561099 original size:54 final size:54
Alignment explanation
Indices: 23561032--23561153 Score: 165
Period size: 54 Copynumber: 2.3 Consensus size: 54
23561022 ATGGTAGTTT
* * *
23561032 TACCCCACCAGGGTATCTCGGTAATTCTAC-CCTACAGGGGTATTTCAGTATTTC
1 TACCCCACAAGGGTATCTCGGTAATTCT-CTCCTACAGCGGTATTTCAGTAATTC
* *
23561086 TACCCCACAAGGGTATTTCGGTAATTCTCTCCTCCAGCGGTATTTCAGTAATTC
1 TACCCCACAAGGGTATCTCGGTAATTCTCTCCTACAGCGGTATTTCAGTAATTC
**
23561140 TACCTTACAAGGGT
1 TACCCCACAAGGGT
23561154 CTACAACTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.02
54 59 0.98
ACGTcount: A:0.23, C:0.27, G:0.18, T:0.32
Consensus pattern (54 bp):
TACCCCACAAGGGTATCTCGGTAATTCTCTCCTACAGCGGTATTTCAGTAATTC
Found at i:23563559 original size:40 final size:40
Alignment explanation
Indices: 23563529--23563778 Score: 385
Period size: 40 Copynumber: 6.3 Consensus size: 40
23563519 GGACTAAGAT
* * * **
23563529 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23563569 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23563609 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
*
23563649 CCGAAGGCATTCGTGCGAGTTGTTAAATTCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23563689 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
23563729 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23563768 CCGAAGGCATT
1 CCGAAGGCATT
23563779 TGAACGAGGA
Statistics
Matches: 197, Mismatches: 13, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
39 33 0.17
40 164 0.83
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:23563689 original size:120 final size:119
Alignment explanation
Indices: 23563476--23563778 Score: 392
Period size: 120 Copynumber: 2.5 Consensus size: 119
23563466 TTGAATGCTG
* * * * * * * * *
23563476 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
23563540 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
64 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
** * *
23563596 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* ** *
23563661 GTGCGAGTTGTTAAATTCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* *
23563716 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
23563779 TGAACGAGGA
Statistics
Matches: 160, Mismatches: 21, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
119 34 0.21
120 122 0.76
121 4 0.03
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:23571549 original size:40 final size:40
Alignment explanation
Indices: 23571519--23571768 Score: 394
Period size: 40 Copynumber: 6.3 Consensus size: 40
23571509 GGACTAAGAT
* * * **
23571519 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23571559 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23571599 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23571639 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23571679 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
* ** * * *
23571719 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
23571758 CCGAAGGCATT
1 CCGAAGGCATT
23571769 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 33 0.17
40 166 0.83
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
Found at i:23571679 original size:120 final size:119
Alignment explanation
Indices: 23571466--23571768 Score: 401
Period size: 120 Copynumber: 2.5 Consensus size: 119
23571456 TTGAATGCTG
* * * * * * * * *
23571466 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAACCGGGCTAAG-TCCCGAAGGCATT
*
23571530 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
64 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
** * *
23571586 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTC
* **
23571651 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* *
23571706 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
23571769 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
119 34 0.21
120 123 0.76
121 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:23573815 original size:38 final size:39
Alignment explanation
Indices: 23573772--23573857 Score: 93
Period size: 39 Copynumber: 2.2 Consensus size: 39
23573762 CCTCAATCAA
*
23573772 ATAAACAGTAATTCATTC-GATAACAGTAACTCATCCGT
1 ATAAACAGTAATTCATCCAGATAACAGTAACTCATCCGT
* * * * * *
23573810 TTAAACAATACTTCATCCATATAATAGTAATTCATCCGT
1 ATAAACAGTAATTCATCCAGATAACAGTAACTCATCCGT
23573849 ATAACACAG
1 ATAA-ACAG
23573858 CTTTTTCACA
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
38 14 0.38
39 20 0.54
40 3 0.08
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (39 bp):
ATAAACAGTAATTCATCCAGATAACAGTAACTCATCCGT
Found at i:23574072 original size:24 final size:23
Alignment explanation
Indices: 23574019--23574085 Score: 80
Period size: 24 Copynumber: 2.9 Consensus size: 23
23574009 GAGCTGATGG
*
23574019 ACAGTAAGCTCTAATGAGCTAAA
1 ACAGTAAGCTCTAACGAGCTAAA
** *
23574042 ATGGTAAGCTCTGACGAGCTAAAA
1 ACAGTAAGCTCTAACGAGCT-AAA
*
23574066 ACAGTAAGCTCTTACGAGCT
1 ACAGTAAGCTCTAACGAGCT
23574086 GATATATTGG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 16 0.44
24 20 0.56
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.22
Consensus pattern (23 bp):
ACAGTAAGCTCTAACGAGCTAAA
Found at i:23575614 original size:133 final size:133
Alignment explanation
Indices: 23575376--23575642 Score: 507
Period size: 133 Copynumber: 2.0 Consensus size: 133
23575366 CGCCCGTGTG
23575376 AGGAAGTCCAGGCCGTGTTGATTTCCCATGTGGGTCCATTTTCTCCGTTTTCGGCCCGTTTCTCG
1 AGGAAGTCCAGGCCGTGTTGATTTCCCATGTGGGTCCATTTTCTCCGTTTTCGGCCCGTTTCTCG
*
23575441 CTCTTTTCACTCTCATATGCTCTCCTAAGTATAAAACATGAAATTAAAGGATTAGGAGCATCGAA
66 CTCTTTTCACTCTCATATGATCTCCTAAGTATAAAACATGAAATTAAAGGATTAGGAGCATCGAA
23575506 TTC
131 TTC
*
23575509 AGGAAGTCCAGGCCGTGTTGATTTCCCATGTGGGTCCATTTTCTCCGTTTTCGGCTCGTTTCTCG
1 AGGAAGTCCAGGCCGTGTTGATTTCCCATGTGGGTCCATTTTCTCCGTTTTCGGCCCGTTTCTCG
*
23575574 CTCTTTTCACTCTCCTATGATCTCCTAAGTATAAAACATGAAATTAAAGGATTAGGAGCATCGAA
66 CTCTTTTCACTCTCATATGATCTCCTAAGTATAAAACATGAAATTAAAGGATTAGGAGCATCGAA
23575639 TTC
131 TTC
23575642 A
1 A
23575643 CCAAATCTAA
Statistics
Matches: 131, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 131 1.00
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (133 bp):
AGGAAGTCCAGGCCGTGTTGATTTCCCATGTGGGTCCATTTTCTCCGTTTTCGGCCCGTTTCTCG
CTCTTTTCACTCTCATATGATCTCCTAAGTATAAAACATGAAATTAAAGGATTAGGAGCATCGAA
TTC
Found at i:23579858 original size:40 final size:40
Alignment explanation
Indices: 23579661--23579844 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
23579651 CGAATGATGT
* * * **
23579661 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
23579701 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
23579741 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23579779 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23579820 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23579845 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:23579866 original size:79 final size:79
Alignment explanation
Indices: 23579713--23579867 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
23579703 GGACTAAGAT
* **
23579713 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
23579778 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
23579792 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
23579855 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
23579868 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 41 0.61
80 24 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:23582780 original size:55 final size:55
Alignment explanation
Indices: 23582668--23582773 Score: 142
Period size: 55 Copynumber: 1.9 Consensus size: 55
23582658 TACATAGGTC
* *
23582668 CACGCCTGTGTTAATTTGACAGGTTCGCCCACGGGTGATAGGCACGGGCGTACCG
1 CACGCCTGTGCTAATTTGACAGGTTCGCCCACGGGTCATAGGCACGGGCGTACCG
* * * *
23582723 CACGCCTGTGCTAATTTTATAGGTTCGCCCACGGTTTCA-AGGTACGGGCGT
1 CACGCCTGTGCTAATTTGACAGGTTCGCCCACGG-GTCATAGGCACGGGCGT
23582774 GTCGCACTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
55 42 0.95
56 2 0.05
ACGTcount: A:0.18, C:0.26, G:0.30, T:0.25
Consensus pattern (55 bp):
CACGCCTGTGCTAATTTGACAGGTTCGCCCACGGGTCATAGGCACGGGCGTACCG
Found at i:23585994 original size:39 final size:39
Alignment explanation
Indices: 23585951--23586158 Score: 301
Period size: 39 Copynumber: 5.3 Consensus size: 39
23585941 AAATGGAGAA
* *
23585951 TTATATCCGGGCTAAGTCCAGAATGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
23585990 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTCGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
23586029 TTATATCCGGGCTAAGCCCCGAATGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
23586068 TTATATCCGGGCTAAGCCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
23586107 TTATATCCGAGCTAAAGTCCCGTAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
*
23586146 TTATATTCGGGCT
1 TTATATCCGGGCT
23586159 TAAAGCCCCG
Statistics
Matches: 154, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 143 0.93
40 11 0.07
ACGTcount: A:0.19, C:0.23, G:0.28, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:23599620 original size:109 final size:109
Alignment explanation
Indices: 23599429--23599659 Score: 381
Period size: 109 Copynumber: 2.1 Consensus size: 109
23599419 TCTAGGGATC
* *
23599429 ACACGCCCGTGTGAACAGGCCGTGTGCCTCACATGGTCACCAGACATGCCCGTGTTGCAGACCGT
1 ACACGCCCGTGTGAACAGGCCGTGTGCCTCACATGGTCACCAGACACGCCCATGTTGCAGACCGT
* * *
23599494 GTGAAAACAGGGCATACATTCTAACTTGTACCACACGGCTGGAG
66 GTAAAAACAAGGCATACATTCTAACTTGTACCACACGGCTAGAG
* *
23599538 ACACGCCCGTGTGAACAGGTCGTGTGCCTCACATGGTCACCAGACACGCCCATGTTGTAGACCGT
1 ACACGCCCGTGTGAACAGGCCGTGTGCCTCACATGGTCACCAGACACGCCCATGTTGCAGACCGT
*
23599603 GTAAAAACAAGGCATACATTCTGACTTGTACCACACGGCTAGAG
66 GTAAAAACAAGGCATACATTCTAACTTGTACCACACGGCTAGAG
*
23599647 ACACGCCCCTGTG
1 ACACGCCCGTGTG
23599660 CCTTGGCTAT
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
109 113 1.00
ACGTcount: A:0.26, C:0.30, G:0.25, T:0.19
Consensus pattern (109 bp):
ACACGCCCGTGTGAACAGGCCGTGTGCCTCACATGGTCACCAGACACGCCCATGTTGCAGACCGT
GTAAAAACAAGGCATACATTCTAACTTGTACCACACGGCTAGAG
Found at i:23601106 original size:43 final size:43
Alignment explanation
Indices: 23600990--23601160 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 43
23600980 CATAAGGCTC
* * * * ** *
23600990 ATACAATGCC-ATATCCCAGATATGGTCTTACATGTTACCAC-
1 ATACAATGCCAATGTCCCAGACATGGCCTTACACGAAATCACA
* * * * * *
23601031 ATATCAATGCCACTGTCCCAAATAGGGTCTTACACGAAATCA-T
1 ATA-CAATGCCAATGTCCCAGACATGGCCTTACACGAAATCACA
* * *
23601074 ATAACGATGCCAATGTTCCAGACATGGCCTTACACGTAATCACA
1 AT-ACAATGCCAATGTCCCAGACATGGCCTTACACGAAATCACA
* * *
23601118 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATCACA
1 ATACAATGCCAATGTCCCAGACATGGCCTTACACGAAATCACA
23601161 TCTCGATAAC
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
41 3 0.03
42 7 0.07
43 91 0.88
44 3 0.03
ACGTcount: A:0.34, C:0.26, G:0.14, T:0.26
Consensus pattern (43 bp):
ATACAATGCCAATGTCCCAGACATGGCCTTACACGAAATCACA
Found at i:23622796 original size:28 final size:28
Alignment explanation
Indices: 23622739--23622803 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
23622729 ATTTACTAGA
*
23622739 ATACCCCTATGTATGCAAAATTTACATT
1 ATACCCCTATGTATGCAAAATTGACATT
*
23622767 ATACCCCTATGTATGCAAAA-TGACCTTT
1 ATACCCCTATGTATGCAAAATTGA-CATT
23622795 ATACCCCTA
1 ATACCCCTA
23622804 AGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
27 2 0.06
28 32 0.94
ACGTcount: A:0.34, C:0.26, G:0.08, T:0.32
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATTGACATT
Found at i:23622950 original size:28 final size:27
Alignment explanation
Indices: 23622909--23622998 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 27
23622899 AGGAAGCGAC
23622909 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
**
23622937 CTGGTGG-ACCTGCCACGTATATCTGTT
1 CTGGTGGCA-CTGCCACAAATATCTGTT
23622964 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
23622993 CTGGTG
1 CTGGTG
23622999 ACTCTGTCAC
Statistics
Matches: 53, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.42
28 23 0.43
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:23622967 original size:27 final size:28
Alignment explanation
Indices: 23622909--23622998 Score: 105
Period size: 27 Copynumber: 3.2 Consensus size: 28
23622899 AGGAAGCGAC
*
23622909 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAAATATCTGTT
**
23622937 CTGGTGG-ACCTGCCAC-GTATATCTGTT
1 CTGGTGGCA-CTGCCACAAAATATCTGTT
23622964 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAAATATCTGT-T
23622993 CTGGTG
1 CTGGTG
23622999 ACTCTGTCAC
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
26 1 0.02
27 22 0.42
28 22 0.42
29 7 0.13
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.32
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAAATATCTGTT
Found at i:23624111 original size:11 final size:10
Alignment explanation
Indices: 23624083--23624116 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
23624073 AGCCTGTAAG
23624083 TATTCTGAAT
1 TATTCTGAAT
*
23624093 TTTTCTGAAT
1 TATTCTGAAT
23624103 ATATTCTGAAT
1 -TATTCTGAAT
23624114 TAT
1 TAT
23624117 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:23630770 original size:27 final size:27
Alignment explanation
Indices: 23630712--23630801 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
23630702 AGGAAGCGTC
23630712 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
23630740 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
23630767 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
23630796 CTGGTG
1 CTGGTG
23630802 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:23630820 original size:55 final size:56
Alignment explanation
Indices: 23630712--23630826 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
23630702 AGGAAGCGTC
* *
23630712 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
23630767 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
23630823 CTGG
1 CTGG
23630827 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:23631289 original size:19 final size:19
Alignment explanation
Indices: 23631265--23631303 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23631255 TTTTAATTAT
* *
23631265 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
23631284 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
23631303 T
1 T
23631304 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:23636925 original size:27 final size:28
Alignment explanation
Indices: 23636869--23636932 Score: 103
Period size: 27 Copynumber: 2.3 Consensus size: 28
23636859 ATTTACTAGA
*
23636869 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
23636897 ATACCCCTATGTATGC-AAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
23636924 ATACCCCTA
1 ATACCCCTA
23636933 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 18 0.53
28 16 0.47
ACGTcount: A:0.33, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:23637078 original size:28 final size:28
Alignment explanation
Indices: 23637037--23637125 Score: 121
Period size: 26 Copynumber: 3.2 Consensus size: 28
23637027 AGGAAGCGTC
23637037 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAATTATCTGTT
*
23637065 CTGGTGGCCCTGCCAC--ATTATCTGTT
1 CTGGTGGCACTGCCACAAATTATCTGTT
*
23637091 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCACAAATTATCTGT-T
23637120 CTGGTG
1 CTGGTG
23637126 ACTCTGTCAC
Statistics
Matches: 54, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
26 25 0.46
28 22 0.41
29 7 0.13
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.33
Consensus pattern (28 bp):
CTGGTGGCACTGCCACAAATTATCTGTT
Found at i:23637091 original size:26 final size:28
Alignment explanation
Indices: 23637037--23637150 Score: 119
Period size: 26 Copynumber: 4.1 Consensus size: 28
23637027 AGGAAGCGTC
*
23637037 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTCTGCCAC-AATTATCTGTAT
*
23637065 CTGGTGGCCCTGCCAC-ATTATCTGT-T
1 CTGGTGGCTCTGCCACAATTATCTGTAT
* *
23637091 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCTCTGCCAC-AATTATCTGTAT
* * *
23637120 CTGGTGACTCTGTCAC-ATTTTCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGTAT
23637147 CTGG
1 CTGG
23637151 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 25 0.34
27 13 0.18
28 22 0.30
29 14 0.19
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (28 bp):
CTGGTGGCTCTGCCACAATTATCTGTAT
Found at i:23637611 original size:19 final size:19
Alignment explanation
Indices: 23637587--23637625 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23637577 TTTTAATTAT
* *
23637587 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
23637606 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
23637625 T
1 T
23637626 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:23638233 original size:11 final size:10
Alignment explanation
Indices: 23638205--23638238 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
23638195 AAGCTGTAAG
23638205 TATTCTGAAT
1 TATTCTGAAT
*
23638215 TTTTCTGAAT
1 TATTCTGAAT
23638225 ATATTCTGAAT
1 -TATTCTGAAT
23638236 TAT
1 TAT
23638239 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:23644768 original size:27 final size:27
Alignment explanation
Indices: 23644713--23644775 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
23644703 ATTTACTAGA
*
23644713 ATACCCCTATGTATGCAAAATTACATT
1 ATACCCCTATGTATGCAAAATGACATT
* *
23644740 ATACCCCTATGTATGC-TAATGACCTTT
1 ATACCCCTATGTATGCAAAATGA-CATT
23644767 ATACCCCTA
1 ATACCCCTA
23644776 GGGTTAATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
26 4 0.12
27 28 0.88
ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33
Consensus pattern (27 bp):
ATACCCCTATGTATGCAAAATGACATT
Found at i:23644939 original size:27 final size:27
Alignment explanation
Indices: 23644881--23644970 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
23644871 AGGAAGCGTC
23644881 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
23644909 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
23644936 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
23644965 CTGGTG
1 CTGGTG
23644971 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:23644989 original size:55 final size:56
Alignment explanation
Indices: 23644881--23644995 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
23644871 AGGAAGCGTC
* *
23644881 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
23644936 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
23644992 CTGG
1 CTGG
23644996 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:23645455 original size:19 final size:19
Alignment explanation
Indices: 23645431--23645469 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23645421 TTTTAATTAT
* *
23645431 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
23645450 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
23645469 T
1 T
23645470 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:23649278 original size:40 final size:40
Alignment explanation
Indices: 23649193--23649304 Score: 127
Period size: 40 Copynumber: 2.8 Consensus size: 40
23649183 CTCGAGAATA
* *
23649193 TAAAGTGGATAGTATTCATTCCTGATTCACTATAATATCT
1 TAAAGTGGATAGGATTTATTCCTGATTCACTATAATATCT
* * **
23649233 CAAAGTGGATAGGATTTGTTCCTGATTCACTATTGTAAT-T
1 TAAAGTGGATAGGATTTATTCCTGATTCACTATAAT-ATCT
* * *
23649273 TAAAGTGAATAAGATTTATTCTTGATTCACTA
1 TAAAGTGGATAGGATTTATTCCTGATTCACTA
23649305 CGGTAACTTA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 58 0.97
41 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.40
Consensus pattern (40 bp):
TAAAGTGGATAGGATTTATTCCTGATTCACTATAATATCT
Found at i:23649329 original size:40 final size:41
Alignment explanation
Indices: 23649193--23649329 Score: 113
Period size: 40 Copynumber: 3.4 Consensus size: 41
23649183 CTCGAGAATA
* * *** *
23649193 TAAAGTG-GATAGTATTCATTCCTGATTCACTATAATATCT
1 TAAAGTGAGATAGGATTTATTCCTGATTCACTACGGTAACT
* * ** *
23649233 CAAAGTG-GATAGGATTTGTTCCTGATTCACTATTGTAATT
1 TAAAGTGAGATAGGATTTATTCCTGATTCACTACGGTAACT
* *
23649273 TAAAGTGA-ATAAGATTTATTCTTGATTCACTACGGTAACT
1 TAAAGTGAGATAGGATTTATTCCTGATTCACTACGGTAACT
23649313 T-AAG-GCAGATAGGATTT
1 TAAAGTG-AGATAGGATTT
23649330 GACCTGAAAA
Statistics
Matches: 78, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
38 1 0.01
39 4 0.05
40 73 0.94
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (41 bp):
TAAAGTGAGATAGGATTTATTCCTGATTCACTACGGTAACT
Found at i:23653528 original size:21 final size:21
Alignment explanation
Indices: 23653502--23653541 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
23653492 TTGTCTAAAT
*
23653502 AAAAAACAACAAAACAAAACA
1 AAAAAACAAAAAAACAAAACA
*
23653523 AAAAAACAAAAAAATAAAA
1 AAAAAACAAAAAAACAAAA
23653542 TAGAGAGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.85, C:0.12, G:0.00, T:0.03
Consensus pattern (21 bp):
AAAAAACAAAAAAACAAAACA
Found at i:23653541 original size:13 final size:13
Alignment explanation
Indices: 23653504--23653533 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23653494 GTCTAAATAA
*
23653504 AAAACAACAAAAC
1 AAAACAAAAAAAC
23653517 AAAACAAAAAAAC
1 AAAACAAAAAAAC
23653530 AAAA
1 AAAA
23653534 AAATAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAACAAAAAAAC
Found at i:23654018 original size:42 final size:42
Alignment explanation
Indices: 23653959--23654273 Score: 413
Period size: 42 Copynumber: 7.5 Consensus size: 42
23653949 GCATTTAGGC
*
23653959 TCCATTTACTTTTCATTGCATTTAGAGGCCTAGGTGTGGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
23654001 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
*
23654043 TCCATTCT-CTCTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
1 TCCATT-TACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* * * * *
23654085 TCCATTCT-CTTTTCATTGCATTTAAAGACTCATGTGTGAAGG
1 TCCATT-TACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* * *
23654127 TCCATTTACTTTTTATTGCATTTAGAGGCCCAAGTGTTGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* * * * *
23654169 TCCATTCAC-TTTCATTTCATTTAGAGACCTAGGTGTAGAGG
1 TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
*
23654210 T-CATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGG
1 TCCATTT-ACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
* *
23654252 TCCGTTTACTTTTTATTGCATT
1 TCCATTTACTTTTCATTGCATT
23654274 GACTTTTCAT
Statistics
Matches: 240, Mismatches: 28, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
40 4 0.02
41 30 0.12
42 201 0.84
43 5 0.02
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.39
Consensus pattern (42 bp):
TCCATTTACTTTTCATTGCATTTAGAGGCCCAGGTGTGGAGG
Found at i:23654280 original size:16 final size:16
Alignment explanation
Indices: 23654259--23654289 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23654249 AGGTCCGTTT
*
23654259 ACTTTTTATTGCATTG
1 ACTTTTCATTGCATTG
23654275 ACTTTTCATTGCATT
1 ACTTTTCATTGCATT
23654290 TAGAGGCTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.10, T:0.55
Consensus pattern (16 bp):
ACTTTTCATTGCATTG
Found at i:23654310 original size:58 final size:58
Alignment explanation
Indices: 23654214--23654331 Score: 155
Period size: 58 Copynumber: 2.0 Consensus size: 58
23654204 TAGAGGTCAT
* * *
23654214 TTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTTACTTTTTATTGCA
1 TTGACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTCCATTCACTTTTTATTGCA
* * * * * *
23654272 TTGACTTTTCATTGCATTTAGAGGCTCAATTTTTGAGGTCCATTCACTTTTTATTTCA
1 TTGACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTCCATTCACTTTTTATTGCA
23654330 TT
1 TT
23654332 TAGAGATCCA
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.19, C:0.17, G:0.18, T:0.46
Consensus pattern (58 bp):
TTGACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTCCATTCACTTTTTATTGCA
Found at i:23654389 original size:142 final size:141
Alignment explanation
Indices: 23654129--23654406 Score: 452
Period size: 142 Copynumber: 2.0 Consensus size: 141
23654119 TGTGAAGGTC
* *
23654129 CATTTACTTTTTATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCACTTTCATTTCATTTAGA
1 CATTGACTTTTCATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCACTTTCATTTCATTTAGA
23654194 GACCTAGGTGTAGAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTT
66 GACCTAGGTGTAGAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTT
23654259 ACTTTTTATTG
131 ACTTTTTATTG
* * * *
23654270 CATTGACTTTTCATTGCATTTAGAGGCTCAATTTTTGAGGTCCATTCACTTTTTATTTCATTTAG
1 CATTGACTTTTCATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCAC-TTTCATTTCATTTAG
*
23654335 AGATCC-ATGTGT-GAAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCG
65 AGA-CCTAGGTGTAG-AGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCG
23654398 TTTACTTTT
128 TTTACTTTT
23654407 CTAGTTTACT
Statistics
Matches: 127, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
141 45 0.35
142 80 0.63
143 2 0.02
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (141 bp):
CATTGACTTTTCATTGCATTTAGAGGCCCAAGTGTTGAGGTCCATTCACTTTCATTTCATTTAGA
GACCTAGGTGTAGAGGTCATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCGTTT
ACTTTTTATTG
Found at i:23654405 original size:42 final size:42
Alignment explanation
Indices: 23654270--23654407 Score: 134
Period size: 42 Copynumber: 3.3 Consensus size: 42
23654260 CTTTTTATTG
* * * * * *
23654270 CATTGACTTTTCATTGCATTTAGAGGCTCAATTTTTGAGGTC
1 CATTTACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
* * * * * *
23654312 CATTCACTTTTTATTTCATTTAGAGATCCATGTGTGAAGGT-
1 CATTTACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
*
23654353 CATTTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTC
1 CATTT-ACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
*
23654396 CGTTTACTTTTC
1 CATTTACTTTTC
23654408 TAGTTTACTT
Statistics
Matches: 76, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
41 4 0.05
42 68 0.89
43 4 0.05
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (42 bp):
CATTTACTTTTCATTGCATTTAGAGACCCAAGTGTGGAGGTC
Found at i:23654435 original size:16 final size:16
Alignment explanation
Indices: 23654414--23654444 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
23654404 TTTCTAGTTT
23654414 ACTTTTCATTACATTG
1 ACTTTTCATTACATTG
23654430 ACTTTTCATTACATT
1 ACTTTTCATTACATT
23654445 TAGGGGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.19, G:0.03, T:0.52
Consensus pattern (16 bp):
ACTTTTCATTACATTG
Found at i:23657396 original size:22 final size:22
Alignment explanation
Indices: 23657368--23657463 Score: 156
Period size: 22 Copynumber: 4.4 Consensus size: 22
23657358 ATGTTGAAAG
* *
23657368 CACACGGGCACGTCCCCGGTCT
1 CACACGGGCATGTCCCCAGTCT
23657390 CACACGGGCATGTCCCCAGTCT
1 CACACGGGCATGTCCCCAGTCT
*
23657412 CACACGGGCGTGTCCCCAGTCT
1 CACACGGGCATGTCCCCAGTCT
*
23657434 CACACGGGCGTGTCCCCAGTCT
1 CACACGGGCATGTCCCCAGTCT
23657456 CACACGGG
1 CACACGGG
23657464 TGTCTGATTT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 71 1.00
ACGTcount: A:0.16, C:0.42, G:0.27, T:0.16
Consensus pattern (22 bp):
CACACGGGCATGTCCCCAGTCT
Found at i:23658320 original size:152 final size:149
Alignment explanation
Indices: 23658061--23658444 Score: 477
Period size: 152 Copynumber: 2.6 Consensus size: 149
23658051 AAAGTTTTGA
* *
23658061 TTTTTTTTAAAAACAGAGAAAGTTTAGATTTT-AACAAATAAAAATATGTTTTTTATAGTTACTT
1 TTTTTTTTAAAAA-AGAGAAAGTTTAGATTTTGAA-AAATAAAAATATGTTTTTT-TAGTCATTT
* * * *
23658125 TAAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTAATTTTTTTCAACCATTTCAAAGTAAAAGCT
63 TAAAGGAAAGTTTAAAATTTTAAAACAAAATTTTAATTGTTTTCAACCATTTCAAAATAAAAGCT
* *
23658190 TTAATCTTTAAGAAAAATAGAGTT
128 TTAATCATTAAGAAAAAT--AGTG
* *
23658214 TTTTTTTTAAAAAATGAGAAAGTTTAGATTTTGAAAAATAAAATTTTGTTTTTTTAGTCATTTTA
1 TTTTTTTTAAAAAA-GAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTAGTCATTTTA
* * * * *
23658279 AAGGAAAGTTTTAACTTTTAAAACAAAATTTTGATTGTTTTCAACTATTTCAAAATAAAAGTTTT
65 AAGGAAAGTTTAAAATTTTAAAACAAAATTTTAATTGTTTTCAACCATTTCAAAATAAAAGCTTT
23658344 AATCATTAAGAAAAATAGTG
130 AATCATTAAGAAAAATAGTG
** * * * *
23658364 TTTTTTTT--AAGGGAGAAAGTTTAGATTTTGAAAAATAAAAATCTATTTTTTAAGTCATTCTAA
1 TTTTTTTTAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTAGTCATTTTAA
* * *
23658427 AAGAAAATTTAAATTTTT
66 AGGAAAGTTTAAAATTTT
23658445 TAACTATTTC
Statistics
Matches: 203, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
147 60 0.30
148 2 0.01
150 11 0.05
152 81 0.40
153 47 0.23
154 2 0.01
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.43
Consensus pattern (149 bp):
TTTTTTTTAAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTAGTCATTTTAA
AGGAAAGTTTAAAATTTTAAAACAAAATTTTAATTGTTTTCAACCATTTCAAAATAAAAGCTTTA
ATCATTAAGAAAAATAGTG
Found at i:23658521 original size:19 final size:20
Alignment explanation
Indices: 23658484--23658522 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23658474 AGAAAAGTAA
* *
23658484 TGATTTTTTCAAAGAAAAAG
1 TGATTTTATAAAAGAAAAAG
23658504 TGATTTTATAAAAGAAAAA
1 TGATTTTATAAAAGAAAAA
23658523 AAAATTTGCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.03, G:0.13, T:0.33
Consensus pattern (20 bp):
TGATTTTATAAAAGAAAAAG
Found at i:23659091 original size:10 final size:10
Alignment explanation
Indices: 23659057--23659092 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
23659047 CACTTGTATA
23659057 ATTTTTATTT
1 ATTTTTATTT
*
23659067 ATTCTTATTT
1 ATTTTTATTT
23659077 CATTTTTATTT
1 -ATTTTTATTT
23659088 ATTTT
1 ATTTT
23659093 CATGTCTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (10 bp):
ATTTTTATTT
Found at i:23659104 original size:21 final size:21
Alignment explanation
Indices: 23659057--23659105 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
23659047 CACTTGTATA
*
23659057 ATTTTTATTTATTCTTATTTC
1 ATTTTTATTTATTCTTATGTC
23659078 ATTTTTATTTATT-TTCATGTC
1 ATTTTTATTTATTCTT-ATGTC
23659099 TATTTTT
1 -ATTTTT
23659106 TTACACATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 2 0.08
21 17 0.68
22 6 0.24
ACGTcount: A:0.18, C:0.08, G:0.02, T:0.71
Consensus pattern (21 bp):
ATTTTTATTTATTCTTATGTC
Found at i:23662840 original size:21 final size:21
Alignment explanation
Indices: 23662814--23662858 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
23662804 CTTAACATGT
*
23662814 AAATGCCTCTAAAATATTAAC
1 AAATGCCTCTAAAATAATAAC
*
23662835 AAATGCCTTTAAAATAATAAC
1 AAATGCCTCTAAAATAATAAC
23662856 AAA
1 AAA
23662859 ATTAACAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.53, C:0.16, G:0.04, T:0.27
Consensus pattern (21 bp):
AAATGCCTCTAAAATAATAAC
Found at i:23663545 original size:23 final size:23
Alignment explanation
Indices: 23663513--23663556 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
23663503 ATGGGTTAGG
*
23663513 GTTATGAAACTTTTTGTATTTAA
1 GTTATAAAACTTTTTGTATTTAA
23663536 GTTATAAAACTTTTTGTATTT
1 GTTATAAAACTTTTTGTATTT
23663557 GCATAACTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.55
Consensus pattern (23 bp):
GTTATAAAACTTTTTGTATTTAA
Found at i:23664070 original size:29 final size:30
Alignment explanation
Indices: 23664033--23664091 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 30
23664023 AAATCGAATC
* * *
23664033 AAATCAAAATTTTATGTATAAAATTGCACA
1 AAATCAAAAGTTCATGTATAAAACTGCACA
*
23664063 AAAT-AAAAGTTCATGTATACAACTGCACA
1 AAATCAAAAGTTCATGTATAAAACTGCACA
23664092 TTAAACCATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 21 0.84
30 4 0.16
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.29
Consensus pattern (30 bp):
AAATCAAAAGTTCATGTATAAAACTGCACA
Found at i:23666493 original size:11 final size:11
Alignment explanation
Indices: 23666477--23666503 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
23666467 GTACCTGAGT
23666477 AATAAACTAAA
1 AATAAACTAAA
23666488 AATAAACTAAA
1 AATAAACTAAA
23666499 AATAA
1 AATAA
23666504 TATTCATCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.74, C:0.07, G:0.00, T:0.19
Consensus pattern (11 bp):
AATAAACTAAA
Found at i:23669274 original size:23 final size:21
Alignment explanation
Indices: 23669231--23669281 Score: 68
Period size: 23 Copynumber: 2.4 Consensus size: 21
23669221 CCAATACTTG
23669231 CAAACA-TATACCAACCAATT
1 CAAACATTATACCAACCAATT
23669251 CAAACATTATAACCAAGCCAATT
1 CAAACATTAT-ACCAA-CCAATT
*
23669274 CTAACATT
1 CAAACATT
23669282 TTACATGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 6 0.22
21 3 0.11
22 5 0.19
23 13 0.48
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.24
Consensus pattern (21 bp):
CAAACATTATACCAACCAATT
Found at i:23669668 original size:16 final size:16
Alignment explanation
Indices: 23669647--23669678 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
23669637 AGTAAGTTCG
23669647 TATAATAAGAATTAAA
1 TATAATAAGAATTAAA
23669663 TATAATAAGAATTAAA
1 TATAATAAGAATTAAA
23669679 CTTACCAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
TATAATAAGAATTAAA
Found at i:23690128 original size:40 final size:40
Alignment explanation
Indices: 23690075--23690150 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
23690065 AAAAACAAAA
* *
23690075 TGGCACTTAGTGTGCGGTTCGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTCGAAATAGCGTCGGCTAAATG
* * *
23690115 TGGCACTTGGTGTGCGATTGGAGATAGCGTCGGCTA
1 TGGCACTTAGTGTGCGATTCGAAATAGCGTCGGCTA
23690151 TATATGTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.20, C:0.17, G:0.34, T:0.29
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAAATAGCGTCGGCTAAATG
Found at i:23690235 original size:28 final size:28
Alignment explanation
Indices: 23690159--23690235 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
23690149 TATATATGTA
* *
23690159 TATGGCACTTAGTGTGCAAAATATTAAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
* * * *
23690187 AATGGCACTTGGTGTGTGAGATATTGAG
1 TATGGCACTTAGTGTGCGAGATATTAAG
* *
23690215 TATGGTACTTAGTGTACGAGA
1 TATGGCACTTAGTGTGCGAGA
23690236 CATCGAAGAT
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.30, C:0.09, G:0.29, T:0.32
Consensus pattern (28 bp):
TATGGCACTTAGTGTGCGAGATATTAAG
Found at i:23692757 original size:36 final size:36
Alignment explanation
Indices: 23692630--23692768 Score: 149
Period size: 37 Copynumber: 3.8 Consensus size: 36
23692620 ATGTGGTACG
* *
23692630 TGTAATACTATAGCTGGGCTATGGCATCGT-AATAGCA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGAA-A-CA
* *
23692667 TGTAAGACCATAGCTAGGCTATGGCATCGTGATGACA
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGA-AACA
* * *
23692704 TGTAAGAACATAGCTGGGCTATGGCATTGTGAAACG
1 TGTAAGACCATAGCTGGGCTATGGCATCGTGAAACA
23692740 TGTAAGACCAT-GTCTGGGAC-ATGGCATCG
1 TGTAAGACCATAG-CTGGG-CTATGGCATCG
23692769 ATATGAGATC
Statistics
Matches: 87, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
35 1 0.01
36 25 0.29
37 59 0.68
38 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (36 bp):
TGTAAGACCATAGCTGGGCTATGGCATCGTGAAACA
Found at i:23692786 original size:42 final size:42
Alignment explanation
Indices: 23692739--23693077 Score: 208
Period size: 48 Copynumber: 7.7 Consensus size: 42
23692729 ATTGTGAAAC
* *
23692739 GTGTAAGACCATGTCTGGGACATGGCATCGATATGAGATCCT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCTT
* *
23692781 GTGTAAGACCATATCTGGGATATGCCATCAGCATCGATATGAGTTCTT
1 GTGTAAGACCATATCTGGG--A---CAT-GGCATCGATATGAGATCTT
** *
23692829 GTGTAAGACCATATCTGGGATATGACATCAACATCGATATGAGATATT
1 GTGTAAGACCATATCT-GG----GACAT-GGCATCGATATGAGATCTT
*
23692877 GTGTAAGACCATATCTGGGATATGACATCGGCATCGATATGAGAT-TAC
1 GTGTAAGACCATATCT-GG----GACAT-GGCATCGATATGAGATCT-T
* * * *
23692925 GTGTAAGACCGTATCTGGGATATGGCTTCGGTATGAGAT-TT
1 GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCTT
* * * * * *
23692966 CTTGTAAGA-C-TGTCTGGGATACGGCATTGATATGTGAT-TT
1 -GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCTT
* * * *
23693006 CGTATAAGACCATGTCTGGAACATGGCATCGATGTGAGA-CTTT
1 -GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATC-TT
23693049 GTGTAAGACCATAGT-T-GGACTATGGCATC
1 GTGTAAGACCATA-TCTGGGAC-ATGGCATC
23693078 AAGTAAACGG
Statistics
Matches: 245, Mismatches: 33, Indels: 38
0.78 0.10 0.12
Matches are distributed among these distances:
40 31 0.13
41 5 0.02
42 81 0.33
43 7 0.03
44 1 0.00
47 6 0.02
48 110 0.45
49 2 0.01
51 1 0.00
53 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGACATGGCATCGATATGAGATCTT
Found at i:23692834 original size:48 final size:48
Alignment explanation
Indices: 23692763--23692948 Score: 284
Period size: 48 Copynumber: 3.9 Consensus size: 48
23692753 CTGGGACATG
* *
23692763 GCATCGATATGAGATCCTGTGTAAGACCATATCTGGGATATGCCATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
*
23692811 GCATCGATATGAGTTCTTGTGTAAGACCATATCTGGGATATGACATCA
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
* * *
23692859 ACATCGATATGAGATATTGTGTAAGACCATATCTGGGATATGACATCG
1 GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
* *
23692907 GCATCGATATGAGAT-TACGTGTAAGACCGTATCTGGGATATG
1 GCATCGATATGAGATCT-TGTGTAAGACCATATCTGGGATATG
23692949 GCTTCGGTAT
Statistics
Matches: 127, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
47 1 0.01
48 126 0.99
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (48 bp):
GCATCGATATGAGATCTTGTGTAAGACCATATCTGGGATATGACATCA
Found at i:23693044 original size:82 final size:82
Alignment explanation
Indices: 23692905--23693057 Score: 182
Period size: 82 Copynumber: 1.9 Consensus size: 82
23692895 GATATGACAT
* * * * * * *
23692905 CGGCATCGATATGAGATTACGTGTAAGACCGTATCTGGGATATGGCTTCGGTATGAGA-TTTCTT
1 CGGCATCGATATGAGATTACGTATAAGACCATATCTGGAACATGGCATCGATATGAGACTTT-GT
23692969 GTAAGACTGTCTGGGATA
65 GTAAGACTGTCTGGGATA
* * * * *
23692987 CGGCATTGATATGTGATTTCGTATAAGACCATGTCTGGAACATGGCATCGATGTGAGACTTTGTG
1 CGGCATCGATATGAGATTACGTATAAGACCATATCTGGAACATGGCATCGATATGAGACTTTGTG
23693052 TAAGAC
66 TAAGAC
23693058 CATAGTTGGA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
82 55 0.95
83 3 0.05
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.31
Consensus pattern (82 bp):
CGGCATCGATATGAGATTACGTATAAGACCATATCTGGAACATGGCATCGATATGAGACTTTGTG
TAAGACTGTCTGGGATA
Found at i:23696666 original size:40 final size:40
Alignment explanation
Indices: 23696613--23696688 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
23696603 CTAAAAAAAA
*
23696613 TGGCACTTAGTGTGCGGTTCGAAATAGCTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTAAATG
* * *
23696653 TGGCACTTGGTGTGCGATTGGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTA
23696689 TATATGTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTAAATG
Found at i:23696733 original size:28 final size:28
Alignment explanation
Indices: 23696702--23696766 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
23696692 ATGTATATGG
23696702 CACTTAGTGTGCAAAATATTAAGAATGA
1 CACTTAGTGTGCAAAATATTAAGAATGA
* * * *
23696730 CACTTGGTGTGCAAGATATTGAGTATGA
1 CACTTAGTGTGCAAAATATTAAGAATGA
23696758 CACTTAGTG
1 CACTTAGTG
23696767 CACTAGACAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.34, C:0.12, G:0.23, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCAAAATATTAAGAATGA
Found at i:23700381 original size:47 final size:47
Alignment explanation
Indices: 23700301--23700428 Score: 148
Period size: 47 Copynumber: 2.7 Consensus size: 47
23700291 GTGCGAATAA
** ** *
23700301 TACCTTGATTTGGCTATGGGCCATGACATAGGTATTTTGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTCCGAGAGAAGT
** * * * *
23700348 TTTCTTGATTTGGTTATGGGCCATGGTACAGGTATTCCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTCCGAGAGAAGT
*
23700395 TACCTTGATTTGGCTATGGGCCGTGGTATAGGTA
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTA
23700429 CTTATCAATT
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
47 65 1.00
ACGTcount: A:0.20, C:0.13, G:0.30, T:0.36
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTATTCCGAGAGAAGT
Found at i:23703050 original size:23 final size:23
Alignment explanation
Indices: 23703024--23703145 Score: 58
Period size: 23 Copynumber: 5.2 Consensus size: 23
23703014 CAAATGGTCG
23703024 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* ***
23703047 ATGTG-TGATAAG-GCCAAA-TGGCCG
1 ATGTGATGA-ATGTG--AAAGT-GTAT
23703071 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
* ***
23703094 ATGTG-TGATAAG-GCCAAA-TGGCCG
1 ATGTGATGA-ATGTG--AAAGT-GTAT
23703118 ATGTGATGAATGTGAAAGTGTAT
1 ATGTGATGAATGTGAAAGTGTAT
23703141 ATGTG
1 ATGTG
23703146 TGATAAGGCC
Statistics
Matches: 69, Mismatches: 16, Indels: 28
0.61 0.14 0.25
Matches are distributed among these distances:
22 8 0.12
23 29 0.42
24 24 0.35
25 8 0.12
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.30
Consensus pattern (23 bp):
ATGTGATGAATGTGAAAGTGTAT
Found at i:23703067 original size:47 final size:47
Alignment explanation
Indices: 23703008--23703293 Score: 419
Period size: 47 Copynumber: 6.1 Consensus size: 47
23702998 GAAATGATAG
* *
23703008 TAAGGCCAAATGGTCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23703055 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
23703102 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23703149 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
23703196 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
23703243 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
23703290 TAAG
1 TAAG
23703294 TCCCAAAGGG
Statistics
Matches: 221, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 221 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCAAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Done.