Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 73 of 259
Found at i:23703468 original size:37 final size:37
Alignment explanation
Indices: 23703412--23703490 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23703402 CCGAGCTCTA
* * *
23703412 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23703449 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23703486 AAGAC
1 AAGAC
23703491 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23710528 original size:42 final size:42
Alignment explanation
Indices: 23710478--23710631 Score: 143
Period size: 42 Copynumber: 3.6 Consensus size: 42
23710468 AAAGACTATG
* *
23710478 TGTAAGACCATATTTGAGATATCGCATCTATATA-AGACTTCA
1 TGTAAGACCATATCTGAGATATCGCATCGATA-AGAGACTTCA
* *
23710520 TGTAAGACCATATCTGGGATATGGCATCGATAAGAGACTTCA
1 TGTAAGACCATATCTGAGATATCGCATCGATAAGAGACTTCA
* * * * *
23710562 TGTAAGACCATAGCT-AGGCTATTGGCATCGATAAGTGA-TCCCA
1 TGTAAGACCATATCTGA-GATA-TCGCATCGATAAGAGACT-TCA
* * *
23710605 TGTAGGACCATATCTGGGATATGGCAT
1 TGTAAGACCATATCTGAGATATCGCAT
23710632 TGGTATGGTA
Statistics
Matches: 94, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
41 1 0.01
42 60 0.64
43 33 0.35
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGAGATATCGCATCGATAAGAGACTTCA
Found at i:23710807 original size:37 final size:37
Alignment explanation
Indices: 23710761--23710833 Score: 146
Period size: 37 Copynumber: 2.0 Consensus size: 37
23710751 AGGTATGTAC
23710761 AAAAAACTCATATGTGATGAGCTTGTTATGTGATGAT
1 AAAAAACTCATATGTGATGAGCTTGTTATGTGATGAT
23710798 AAAAAACTCATATGTGATGAGCTTGTTATGTGATGA
1 AAAAAACTCATATGTGATGAGCTTGTTATGTGATGA
23710834 ACCCTCGATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.36, C:0.08, G:0.22, T:0.34
Consensus pattern (37 bp):
AAAAAACTCATATGTGATGAGCTTGTTATGTGATGAT
Found at i:23722820 original size:24 final size:24
Alignment explanation
Indices: 23722788--23722858 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
23722778 CTGTCAGGAG
23722788 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
23722812 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
23722836 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
23722859 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:23722870 original size:48 final size:48
Alignment explanation
Indices: 23722788--23722881 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
23722778 CTGTCAGGAG
** * *
23722788 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
23722836 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
23722882 AACAAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:23724320 original size:28 final size:26
Alignment explanation
Indices: 23724280--23724385 Score: 77
Period size: 28 Copynumber: 3.8 Consensus size: 26
23724270 AAGCGTCCTG
*
23724280 GTGGCTATGCCACAAATTATCTGATCTA
1 GTGGCTCTGCCAC--ATTATCTGATCTA
* *
23724308 GTGGCTCTGCCACATATATATCTGTTCCA
1 GTGGCTCTGCCAC--AT-TATCTGATCTA
* * *
23724337 GTAGTTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCAC-ATTATCTG-ATCTA
* *
23724365 GTGACTCTGTCACATTATCTG
1 GTGGCTCTGCCACATTATCTG
23724386 TTTTGGCAGC
Statistics
Matches: 62, Mismatches: 14, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
27 14 0.23
28 28 0.45
29 20 0.32
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGATCTA
Found at i:23724345 original size:29 final size:28
Alignment explanation
Indices: 23724287--23724358 Score: 74
Period size: 29 Copynumber: 2.6 Consensus size: 28
23724277 CTGGTGGCTA
* *
23724287 TGCCACAAATTATCTGATCTAGTGGCTC
1 TGCCACAAATTATCTGATCCAGTAGCTC
* * *
23724315 TGCCACATATATATCTGTTCCAGTAGTTC
1 TGCCACAAAT-TATCTGATCCAGTAGCTC
*
23724344 TGCCAC-GATTATCTG
1 TGCCACAAATTATCTG
23724359 TATCTGGTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
27 6 0.16
28 11 0.30
29 20 0.54
ACGTcount: A:0.24, C:0.25, G:0.17, T:0.35
Consensus pattern (28 bp):
TGCCACAAATTATCTGATCCAGTAGCTC
Found at i:23738934 original size:29 final size:30
Alignment explanation
Indices: 23738878--23738936 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
23738868 TTCCCGAGCC
23738878 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
* *
23738908 TAGGGGCAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
23738937 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCAAAAGTT
Found at i:23742258 original size:30 final size:30
Alignment explanation
Indices: 23742222--23742281 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23742212 TTCCCGAGCC
*
23742222 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
23742252 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
23742282 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:23746909 original size:46 final size:43
Alignment explanation
Indices: 23746858--23747034 Score: 165
Period size: 46 Copynumber: 3.9 Consensus size: 43
23746848 ATGGTTGAGC
23746858 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-GA
* *** * *
23746902 ATGTCCGAACTCGTTGAGTTGAGTCTGAGTTCGAGAGATGTAACTAGGC
1 A--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GGA
* *
23746951 ATCCGAGCTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGTGAA
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-G-A
* * *
23746996 CACCCGAGCTCGTTGAGTTGAGTCCGAGTTCAGTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23747035 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 17, Indels: 16
0.76 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.29
Consensus pattern (43 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGGA
Found at i:23747015 original size:93 final size:93
Alignment explanation
Indices: 23746856--23747026 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
23746846 GGATGGTTGA
***
23746856 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
*
23746921 TGAGTCTGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
23746949 GCATCCGAGCTCGTTGAGTTGAGTCCGGGTTCACTTATGGATGTGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
23747014 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
23747027 AGTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:23750000 original size:15 final size:15
Alignment explanation
Indices: 23749980--23750035 Score: 69
Period size: 15 Copynumber: 3.7 Consensus size: 15
23749970 GTATCTTGGG
*
23749980 TTTCTTTATTCTGGA
1 TTTCTTTATTCTAGA
23749995 TTTCTTTATTCTAGA
1 TTTCTTTATTCTAGA
* *
23750010 TTTCTCTA-TCTTTGA
1 TTTCTTTATTC-TAGA
23750025 TTTCTTTATTC
1 TTTCTTTATTC
23750036 GATTTCCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.14, C:0.16, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTCTTTATTCTAGA
Found at i:23757185 original size:23 final size:23
Alignment explanation
Indices: 23757155--23757199 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
23757145 TGGCCCATTT
23757155 TTAAGAAAATTT-CAC-ATTAACC
1 TTAAG-AAATTTACACTATTAACC
23757177 TTAATGAAATTTACACTATTAAC
1 TTAA-GAAATTTACACTATTAAC
23757200 AAATTAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 10 0.50
23 4 0.20
24 6 0.30
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.36
Consensus pattern (23 bp):
TTAAGAAATTTACACTATTAACC
Found at i:23761519 original size:29 final size:29
Alignment explanation
Indices: 23761482--23761581 Score: 94
Period size: 29 Copynumber: 3.5 Consensus size: 29
23761472 TGAATGTGAC
* * *
23761482 TGGGTCTAACGGGCCATATAAATTTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* **
23761511 TGGGCCTAATGGGCCATATACAGGTGATT
1 TGGGCCTAATGGGCCATATAAATATGATT
* * *
23761540 TAGGCCTAATGGGCAATATGAATATGA-T
1 TGGGCCTAATGGGCCATATAAATATGATT
* *
23761568 TGGGCTTAGTGGGC
1 TGGGCCTAATGGGC
23761582 TAGATACAGG
Statistics
Matches: 57, Mismatches: 14, Indels: 1
0.79 0.19 0.01
Matches are distributed among these distances:
28 12 0.21
29 45 0.79
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (29 bp):
TGGGCCTAATGGGCCATATAAATATGATT
Found at i:23765971 original size:29 final size:28
Alignment explanation
Indices: 23765928--23766035 Score: 108
Period size: 29 Copynumber: 3.8 Consensus size: 28
23765918 CATGAAGATG
* *
23765928 AATGTGACTGGGCCTAACGGGCCATATA
1 AATGTGATTGGGCCTAATGGGCCATATA
23765956 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * * * *
23765985 CAGGTGATTTAGGCCTAATGGGCAATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * *
23766014 AATATGATTGGGCTTAGTGGGC
1 AATGTGATTGGGCCTAATGGGC
23766036 TAGATACAGG
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATA
Found at i:23767222 original size:35 final size:35
Alignment explanation
Indices: 23767183--23767257 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 35
23767173 ATTCGTCATC
* *
23767183 CTTACCATAAAATTATGTTTCATTCCATTTTCTTA
1 CTTACCATAAAATCATGCTTCATTCCATTTTCTTA
* *
23767218 CTTACCATACAATCATGCTTCATTCCATTTTTTTA
1 CTTACCATAAAATCATGCTTCATTCCATTTTCTTA
23767253 CTTAC
1 CTTAC
23767258 AATTTCCAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.03, T:0.47
Consensus pattern (35 bp):
CTTACCATAAAATCATGCTTCATTCCATTTTCTTA
Found at i:23790222 original size:39 final size:39
Alignment explanation
Indices: 23790168--23790244 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
23790158 TTTAGTTTGT
23790168 GTCTTTAATTATGTCATAGTTTGAACATCATTAATATGA
1 GTCTTTAATTATGTCATAGTTTGAACATCATTAATATGA
23790207 GTCTTTAATTATGTCATAGTTTGAACATCATTAATATG
1 GTCTTTAATTATGTCATAGTTTGAACATCATTAATATG
23790245 TGTTCCGCAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.10, G:0.13, T:0.44
Consensus pattern (39 bp):
GTCTTTAATTATGTCATAGTTTGAACATCATTAATATGA
Found at i:23795502 original size:46 final size:46
Alignment explanation
Indices: 23795445--23795562 Score: 209
Period size: 46 Copynumber: 2.6 Consensus size: 46
23795435 AAAAACATCT
* *
23795445 ACCCACTATCAAGAATGATAGGAACCTTGGTATATGATGAACCTCG
1 ACCCACTATCAAGGATGATAGGAACCTTGGTATATAATGAACCTCG
*
23795491 ACCCACTATCAAGGATGATAGGAACCTTGTTATATAATGAACCTCG
1 ACCCACTATCAAGGATGATAGGAACCTTGGTATATAATGAACCTCG
23795537 ACCCACTATCAAGGATGATAGGAACC
1 ACCCACTATCAAGGATGATAGGAACC
23795563 CCGGTATAAA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 69 1.00
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (46 bp):
ACCCACTATCAAGGATGATAGGAACCTTGGTATATAATGAACCTCG
Found at i:23798619 original size:12 final size:12
Alignment explanation
Indices: 23798604--23798637 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
23798594 ACACACTCTT
23798604 TTTCTTTTTCAA
1 TTTCTTTTTCAA
*
23798616 TTTCTTTTTTAA
1 TTTCTTTTTCAA
*
23798628 CTTCTTTTTC
1 TTTCTTTTTC
23798638 TCTTCTCTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.71
Consensus pattern (12 bp):
TTTCTTTTTCAA
Found at i:23800682 original size:50 final size:51
Alignment explanation
Indices: 23800491--23800735 Score: 256
Period size: 50 Copynumber: 4.9 Consensus size: 51
23800481 CACTTATAGC
* *
23800491 CGAAGCTATCTGA-TACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-
1 CGAAGCCAT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAT
* * * * * *
23800541 CCAA-CAATCCG-GTACACGTAGTAGCCTGCACTTAGTACTACACACGTGAT
1 CGAAGCCAT-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAT
23800591 CGAAGCCATTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAT
1 CGAAGCCATTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAT
* * *
23800642 CGAAGTCATTGAGTA-GCATAGTAGCCTACACTTAGTACTACACATGCGA-
1 CGAAGCCATTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAT
* * *
23800691 CTTAA--CAGTATG-GTACACGTAGTAGCCTGCACTTAGTACTACACA
1 C-GAAGCCA-T-TGAGTACGCATAGTAGCCTGCACTTAGTACTACACA
23800736 CTTGTACTCA
Statistics
Matches: 167, Mismatches: 20, Indels: 16
0.82 0.10 0.08
Matches are distributed among these distances:
48 2 0.01
49 43 0.26
50 69 0.41
51 53 0.32
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (51 bp):
CGAAGCCATTGAGTACGCATAGTAGCCTGCACTTAGTACTACACATGTGAT
Found at i:23802484 original size:23 final size:23
Alignment explanation
Indices: 23802458--23802504 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
23802448 AGCTTTCAGA
*
23802458 CAATTACGAATCACTTTTACTTT
1 CAATCACGAATCACTTTTACTTT
23802481 CAATCACGAATCACTTTTACTTT
1 CAATCACGAATCACTTTTACTTT
23802504 C
1 C
23802505 TCTTCAGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.04, T:0.40
Consensus pattern (23 bp):
CAATCACGAATCACTTTTACTTT
Found at i:23807993 original size:50 final size:50
Alignment explanation
Indices: 23807875--23808102 Score: 273
Period size: 50 Copynumber: 4.6 Consensus size: 50
23807865 CTGATATGCA
* * * *
23807875 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
* *
23807924 TAGTAGCCTGCACTTAGTACTACACACGGGACCTCACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
* * * * *
23807974 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCCAT-TGAGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAA-CCATCTGA-TACACG
* * * *
23808025 TAGTAGCCTGCACTTAGTACTACACATGCGACTTAA-CAGTATGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCA-TCTGATACACG
23808075 TAGTAGCCTGCACTTAGTACTACACACG
1 TAGTAGCCTGCACTTAGTACTACACACG
23808103 TGTACTCACA
Statistics
Matches: 153, Mismatches: 21, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
49 33 0.22
50 79 0.52
51 41 0.27
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACG
Found at i:23808073 original size:101 final size:99
Alignment explanation
Indices: 23807875--23808104 Score: 293
Period size: 101 Copynumber: 2.3 Consensus size: 99
23807865 CTGATATGCA
* * *
23807875 TAGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCGGTACACATAGTAGCCTGCACTTA
* * *
23807940 GTACTACACACGGGACCTCACCATCTGATACACG
66 GTACTACACACGCGACCTCAACATATGATACACG
* * * *
23807974 TAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGCCAT-TGAGTACGCATAGTAGCCTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-CAATCCG-GTACACATAGTAGCCTGCAC
* * *
23808038 TTAGTACTACACATGCGA-CTTAACAGTATGGTACACG
63 TTAGTACTACACACGCGACCTCAACA-TATGATACACG
23808075 TAGTAGCCTGCACTTAGTACTACACACGTG
1 TAGTAGCCTGCACTTAGTACTACACACGTG
23808105 TACTCACAAT
Statistics
Matches: 114, Mismatches: 13, Indels: 6
0.86 0.10 0.05
Matches are distributed among these distances:
99 29 0.25
100 9 0.08
101 76 0.67
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAACAATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTCAACATATGATACACG
Found at i:23810996 original size:50 final size:51
Alignment explanation
Indices: 23810897--23810996 Score: 139
Period size: 50 Copynumber: 2.0 Consensus size: 51
23810887 ACTTAGTTTA
* **
23810897 ATGATGCAGACTTAAACTAACATGGTAGTTACATAATGCATGTCATTATTT
1 ATGATGCAGACTTAAACTAACATGGAAGTTACATAATGCATAACATTATTT
* * *
23810948 ATGATGCATACTT-AACTAGCATGGAAGTTACATAATGCATAACTTTATT
1 ATGATGCAGACTTAAACTAACATGGAAGTTACATAATGCATAACATTATT
23810997 AAATGCAGAA
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
50 31 0.72
51 12 0.28
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (51 bp):
ATGATGCAGACTTAAACTAACATGGAAGTTACATAATGCATAACATTATTT
Found at i:23814821 original size:37 final size:37
Alignment explanation
Indices: 23814766--23814845 Score: 135
Period size: 37 Copynumber: 2.2 Consensus size: 37
23814756 TGATATTTAC
*
23814766 TTTTA-TCAAATAATATAATTACATTTAAAACTTAAT
1 TTTTACTCAAATAAAATAATTACATTTAAAACTTAAT
*
23814802 TTTTACTCAAATAAAATAATTACATTTAATACTTAAT
1 TTTTACTCAAATAAAATAATTACATTTAAAACTTAAT
23814839 TTTTACT
1 TTTTACT
23814846 AACTTACCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
36 5 0.12
37 36 0.88
ACGTcount: A:0.44, C:0.10, G:0.00, T:0.46
Consensus pattern (37 bp):
TTTTACTCAAATAAAATAATTACATTTAAAACTTAAT
Found at i:23819283 original size:35 final size:35
Alignment explanation
Indices: 23819206--23819284 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
23819196 GGTTAGGGTT
* * * **
23819206 TTGTCAAAATAAGTTAAGGTTTAGTGTTTAAGTTT
1 TTGTTAAAACAAGTTAAGGTTTAGAGTTTAAGTGA
*
23819241 TTGTTAAAACAAGTTAAGGTTTAGAGTTTTAGTAGA
1 TTGTTAAAACAAGTTAAGGTTTAGAGTTTAAGT-GA
23819277 TT-TTAAAA
1 TTGTTAAAA
23819285 ATAAACCAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
35 35 0.95
36 2 0.05
ACGTcount: A:0.35, C:0.03, G:0.19, T:0.43
Consensus pattern (35 bp):
TTGTTAAAACAAGTTAAGGTTTAGAGTTTAAGTGA
Found at i:23819360 original size:34 final size:35
Alignment explanation
Indices: 23819322--23819390 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
23819312 AAAAATTATT
23819322 TAAATTAG-G-GTTTAGGGTTGTTAAATAAATTAAG
1 TAAATTAGAGTGTTTAGGGTT-TTAAATAAATTAAG
*
23819356 TAAATTAGAGTTTTTAGGGTTTTAAATAAATTAAG
1 TAAATTAGAGTGTTTAGGGTTTTAAATAAATTAAG
23819391 GGCTTTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
34 8 0.25
35 15 0.47
36 9 0.28
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (35 bp):
TAAATTAGAGTGTTTAGGGTTTTAAATAAATTAAG
Found at i:23819397 original size:18 final size:18
Alignment explanation
Indices: 23819371--23819406 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
23819361 TAGAGTTTTT
*
23819371 AGGGTTTTAAATAAATTA
1 AGGGCTTTAAATAAATTA
23819389 AGGGCTTTAAATAAATTA
1 AGGGCTTTAAATAAATTA
23819407 GGTTTAAGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.17, T:0.36
Consensus pattern (18 bp):
AGGGCTTTAAATAAATTA
Found at i:23819493 original size:34 final size:36
Alignment explanation
Indices: 23819446--23819522 Score: 97
Period size: 35 Copynumber: 2.2 Consensus size: 36
23819436 ATTAGTGCTT
* * *
23819446 TAAA-TAAGTTAAATTAAGGTT-TATGGTTTTTAGA
1 TAAATTAAGTTAAATTAAGGTTCTAAGATTTTTAAA
*
23819480 TAAATTAAG-TAAATTAGGGTTCTAAGATTTTTAAA
1 TAAATTAAGTTAAATTAAGGTTCTAAGATTTTTAAA
23819515 TAAATTAA
1 TAAATTAA
23819523 ATTAGGGTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 15 0.41
35 22 0.59
ACGTcount: A:0.43, C:0.01, G:0.14, T:0.42
Consensus pattern (36 bp):
TAAATTAAGTTAAATTAAGGTTCTAAGATTTTTAAA
Found at i:23819910 original size:126 final size:126
Alignment explanation
Indices: 23819627--23820132 Score: 701
Period size: 126 Copynumber: 4.0 Consensus size: 126
23819617 TTTTGTACCC
* *
23819627 TGAAAAAATAATTTTGAGAATACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
* * * * * * * * *
23819692 ACTATTAGC-AAATTACAGAAAAAAGCTCCCACGTCGATGCTCTTTTTCTACGGTAGTTCT
66 ACTGTCAGCAAAATTACAAAAAAAAGCTACCACATGGACGCTCTTTTTCTACAGTAGTTCA
* * * *
23819752 TGAAGAAATAATTTTGAGAAAATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
* * *
23819817 ACTGTCAGCAAAATGA-ATAAAAAAAGCTACCACGTGGACGCTCTTTTTATACAGTAGTTCA
66 ACTGTCAGCAAAATTACA-AAAAAAAGCTACCACATGGACGCTCTTTTTCTACAGTAGTTCA
* * *
23819878 TGAAAAAATAATTTTGAGAAGACATTTGTGAACAAATAGTGTCAAAAACGCTTCAAGCATGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
* * * *
23819943 ACTGTCAGCAAAATTACAGAAAAAAGCTCCCACATGGATGCTCTTTTTCTACAGTAGTTCC
66 ACTGTCAGCAAAATTACAAAAAAAAGCTACCACATGGACGCTCTTTTTCTACAGTAGTTCA
* * *
23820004 TGAAAAAATAAGTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
* * * *
23820069 AATGTCAGCAAATTTACGAAAAAAAGCTACCATATGGACGCTCTTTTTCTACAGTAGTTCA
66 ACTGTCAGCAAAATTACAAAAAAAAGCTACCACATGGACGCTCTTTTTCTACAGTAGTTCA
23820130 TGA
1 TGA
23820133 TTGGCCTTAG
Statistics
Matches: 336, Mismatches: 42, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
125 68 0.20
126 267 0.79
127 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (126 bp):
TGAAAAAATAATTTTGAGAAGACGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
ACTGTCAGCAAAATTACAAAAAAAAGCTACCACATGGACGCTCTTTTTCTACAGTAGTTCA
Found at i:23820077 original size:252 final size:251
Alignment explanation
Indices: 23819627--23820132 Score: 787
Period size: 252 Copynumber: 2.0 Consensus size: 251
23819617 TTTTGTACCC
* *
23819627 TGAAAAAATAATTTTGAGAATACGTTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
1 TGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
* * * * *
23819692 ACTATTAGCAAATTACAGAAAAAAGCTCCCACGTCGATGCTCTTTTTCTACGGTAGTTCTTGAAG
66 ACTATCAGCAAATTACAGAAAAAAGCTCCCACATCGATGCTCTTTTTCTACAGTAGTTCCTGAAA
* *
23819757 AAATAATTTTGAGAAAATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCACTGT
131 AAATAAGTTTGAGAAAATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAATGT
* *
23819822 CAGCAAAATGAATAAAAAAAGCTACCACGTGGACGCTCTTTTTATACAGTAGTTCA
196 CAGCAAAATGAAGAAAAAAAGCTACCACATGGACGCTCTTTTTATACAGTAGTTCA
* * *
23819878 TGAAAAAATAATTTTGAGAAGACATTTGTGAACAAATAGTGTCAAAAACGCTTCAAGCATGATGC
1 TGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
* *
23819943 ACTGTCAGCAAAATTACAGAAAAAAGCTCCCACATGGATGCTCTTTTTCTACAGTAGTTCCTGAA
66 ACTATCAGC-AAATTACAGAAAAAAGCTCCCACATCGATGCTCTTTTTCTACAGTAGTTCCTGAA
* * *
23820008 AAAATAAGTTTGAGAAGATGTTTCTGAACAAATAGTGTCAAAAATGCTTCAAGCAGGATGCAATG
130 AAAATAAGTTTGAGAAAATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAATG
* * * * *
23820073 TCAGCAAATTTACGAAAAAAAGCTACCATATGGACGCTCTTTTTCTACAGTAGTTCA
195 TCAGCAAAATGAAGAAAAAAAGCTACCACATGGACGCTCTTTTTATACAGTAGTTCA
23820130 TGA
1 TGA
23820133 TTGGCCTTAG
Statistics
Matches: 230, Mismatches: 24, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
251 67 0.29
252 163 0.71
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (251 bp):
TGAAAAAATAATTTTGAGAAGACATTTCTAAACAAATAGTGTCAAAAACGCTTCAAGCAGGATGC
ACTATCAGCAAATTACAGAAAAAAGCTCCCACATCGATGCTCTTTTTCTACAGTAGTTCCTGAAA
AAATAAGTTTGAGAAAATGTTTCTGAACAAATAGTGTCAAAAACGCTTCAAGCAAGATGCAATGT
CAGCAAAATGAAGAAAAAAAGCTACCACATGGACGCTCTTTTTATACAGTAGTTCA
Found at i:23822738 original size:38 final size:39
Alignment explanation
Indices: 23822649--23822825 Score: 243
Period size: 39 Copynumber: 4.5 Consensus size: 39
23822639 CAAAAGCATG
* * * *
23822649 CGGGACTTTAAGCCCGGATATAATACCCGCAC-AAGGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
**
23822689 CGGGACTTTAGCCC-GATATAACATTAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
23822728 CGGGACTTAGCCCGGATAT-ACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
23822766 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
23822805 CGGGACTTGGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
23822826 TTCTCCATTA
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
38 55 0.44
39 61 0.49
40 9 0.07
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:23822784 original size:77 final size:76
Alignment explanation
Indices: 23822649--23822824 Score: 237
Period size: 77 Copynumber: 2.3 Consensus size: 76
23822639 CAAAAGCATG
* * **
23822649 CGGGACTTTAAGCCCGGATATAATACCCGCACAAGGCCTGCGGGACTTTAGCCCGATATAACATT
1 CGGGAC-TT-AGCCCGGATAT-ACACCAGCACAAGGCCTGCGGGACTTTAGCCCGATATAACACC
23822714 AGCACGAATGCCTT
63 AGCACGAATGCCTT
* *
23822728 CGGGACTTAGCCCGGATATACACCAGCACGAATGCCTTCGGGAC-TTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATACACCAGCAC-AAGGCCTGCGGGACTTTAGCCC-GATATAACACCA
23822792 GCACGAATGCCTT
64 GCACGAATGCCTT
*
23822805 CGGGACTTGGCCCGGATATA
1 CGGGACTTAGCCCGGATATA
23822825 ATTCTCCATT
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
76 15 0.17
77 65 0.74
78 2 0.02
79 6 0.07
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (76 bp):
CGGGACTTAGCCCGGATATACACCAGCACAAGGCCTGCGGGACTTTAGCCCGATATAACACCAGC
ACGAATGCCTT
Found at i:23825452 original size:2 final size:2
Alignment explanation
Indices: 23825445--23825512 Score: 118
Period size: 2 Copynumber: 34.0 Consensus size: 2
23825435 GTATTAGCAT
*
23825445 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA TA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
*
23825487 CA CA CA CA CA CA CG CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
23825513 TATATATATA
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.49, C:0.49, G:0.01, T:0.01
Consensus pattern (2 bp):
CA
Found at i:23825695 original size:26 final size:26
Alignment explanation
Indices: 23825656--23825705 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
23825646 ACAAAAATTC
23825656 CTTCTGAAATTAAACCGT-CACATATA
1 CTTCTGAAATTAAA-CGTACACATATA
23825682 CTTCTGAAGA-TAAACGTACACATA
1 CTTCTGAA-ATTAAACGTACACATA
23825706 GAATGCCCCG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
25 3 0.14
26 18 0.82
27 1 0.05
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.28
Consensus pattern (26 bp):
CTTCTGAAATTAAACGTACACATATA
Found at i:23828749 original size:39 final size:39
Alignment explanation
Indices: 23828689--23828905 Score: 294
Period size: 39 Copynumber: 5.5 Consensus size: 39
23828679 ATAAAGCATG
* * * *
23828689 CGGGACTTTAAGCCCGGATATAATACCCGCAC-AAGGCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
*
23828729 CGGGACTTTAGCCCGGATATAACATCAGCACGAATGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
23828769 CGGGACTTAGCCCGGATAT-ACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
23828807 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * * *
23828846 CAGGACTTGGCCTGGATATAACACCAGCATGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
23828885 TGGGACTTGGCCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
23828906 TTCTCCATTA
Statistics
Matches: 162, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
38 37 0.23
39 104 0.64
40 21 0.13
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:23828880 original size:116 final size:118
Alignment explanation
Indices: 23828689--23828904 Score: 303
Period size: 116 Copynumber: 1.8 Consensus size: 118
23828679 ATAAAGCATG
* * * *
23828689 CGGGACTTTAAGCCCGGATATAATACCCGCACAAGGCCTGCGGGACTTTAGCCCGGATATAACAT
1 CGGGACTTTAAGCCCGGATATAACACCAGCACAAGGCCTGCAGGACTTTAGCCCGGATATAACAC
23828754 CAGCACGAATGCCTTCGGGACTTAGCCCGGATATACACCAGCACGAATGCCTT
66 CAGCACGAATGCCTTCGGGACTTAGCCCGGATATACACCAGCACGAATGCCTT
* * * *
23828807 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTTCAGGAC-TTGGCCTGGATATAACA
1 CGGGACTTTAAGCCCGGATATAACACCAGCAC-AAGGCCTGCAGGACTTTAGCCCGGATATAACA
* * *
23828869 CCAGCATGAATGCCTTTGGGACTTGGCCCGGATATA
65 CCAGCACGAATGCCTTCGGGACTTAGCCCGGATATA
23828905 ATTCTCCATT
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
116 67 0.78
117 13 0.15
118 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (118 bp):
CGGGACTTTAAGCCCGGATATAACACCAGCACAAGGCCTGCAGGACTTTAGCCCGGATATAACAC
CAGCACGAATGCCTTCGGGACTTAGCCCGGATATACACCAGCACGAATGCCTT
Found at i:23833390 original size:30 final size:30
Alignment explanation
Indices: 23833355--23833415 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
23833345 TCCTTAACTC
23833355 AAACTTTTGCAAAATTACAATTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
* * *
23833385 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACAATTTTGCCCCT
23833415 A
1 A
23833416 GGCTCGAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACAATTTTGCCCCT
Found at i:23865150 original size:42 final size:42
Alignment explanation
Indices: 23865089--23865297 Score: 301
Period size: 42 Copynumber: 5.0 Consensus size: 42
23865079 GAAAATATTT
* *
23865089 GAGATAGCTTCAGCTATGCATTGGCACTTAGTGTGTGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* *
23865131 GGGATAGCCTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
*
23865173 GGGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * * * *
23865215 AAGATAGCTTCGGCAATGCATTGGCATTTAGTGTGCGTGATT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * *
23865257 GAGTTAGCTTCGGCTACGTATTGGCACTTAGTGTGCGAGAT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGAT
23865298 TCCCGAGTAA
Statistics
Matches: 149, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 149 1.00
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
Found at i:23865399 original size:32 final size:32
Alignment explanation
Indices: 23865363--23865426 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
23865353 TGAGTATGAG
*
23865363 ATTGGTACAAGATGGTACATGTATGTACGAAA
1 ATTGGTACAAGATGGTACAAGTATGTACGAAA
*
23865395 ATTGGTACGAGATGGTACAAGTATGTACGAAA
1 ATTGGTACAAGATGGTACAAGTATGTACGAAA
23865427 CTTCAATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.38, C:0.09, G:0.27, T:0.27
Consensus pattern (32 bp):
ATTGGTACAAGATGGTACAAGTATGTACGAAA
Found at i:23867486 original size:37 final size:37
Alignment explanation
Indices: 23867436--23867558 Score: 151
Period size: 37 Copynumber: 3.4 Consensus size: 37
23867426 CATGTGAGTA
* *
23867436 CGTGTAAGACCATAACTGGGCTATGGCATCGTAATAG
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* * * *
23867473 CGTGTAAGACCATAGTTAGGTTATGGCATCTTGAT-G
1 CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
* *
23867509 ACATGTAAGACCATAGCTGGGCTATGGCATTGTGATA-
1 -CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
23867546 CGTGTAAGACCAT
1 CGTGTAAGACCAT
23867559 GTCTAGGACA
Statistics
Matches: 71, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
36 13 0.18
37 58 0.82
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (37 bp):
CGTGTAAGACCATAGCTGGGCTATGGCATCGTGATAG
Found at i:23867648 original size:42 final size:42
Alignment explanation
Indices: 23867546--23867743 Score: 170
Period size: 42 Copynumber: 4.7 Consensus size: 42
23867536 CATTGTGATA
* * * * *
23867546 CGTGTAAGACCATGTCTAGGACATGGAATCAATATGAGA-TC
1 CGTGTAAGACCATGTCTGGGATATGGCATCGATATGAGATTT
* * * *
23867587 CTGTGTAAGACTATATCTGGGATATGGCTTCGGTATGAGATTT
1 C-GTGTAAGACCATGTCTGGGATATGGCATCGATATGAGATTT
* ***
23867630 CGTGTAAGACCGTGTCTGGGATGCAGCATCGATATGTA-ATTT
1 CGTGTAAGACCATGTCTGGGATATGGCATCGATATG-AGATTT
* * * * *
23867672 CGTATAAGACCATGCCTGGGACATGGCATCGATGTGAGACTT
1 CGTGTAAGACCATGTCTGGGATATGGCATCGATATGAGATTT
23867714 CGTGTAAGACCATAGT-T-GGACTATGGCATC
1 CGTGTAAGACCAT-GTCTGGGA-TATGGCATC
23867744 AAGTAAATGA
Statistics
Matches: 122, Mismatches: 29, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
41 5 0.04
42 113 0.93
43 4 0.03
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGATATGGCATCGATATGAGATTT
Found at i:23871921 original size:42 final size:42
Alignment explanation
Indices: 23871860--23872068 Score: 319
Period size: 42 Copynumber: 5.0 Consensus size: 42
23871850 GGAAATATTT
*
23871860 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGTGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* *
23871902 GGGATAGCCTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
*
23871944 GGGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * *
23871986 AAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGTGTGATC
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
* * * *
23872028 GAGTTAGCTTCGGCTACGTATTGGTACTTAGTGTGCGAGAT
1 GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGAT
23872069 TCCCGAGTAA
Statistics
Matches: 152, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 152 1.00
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.31
Consensus pattern (42 bp):
GAGATAGCTTCGGCTATGCATTGGCACTTAGTGTGCGAGATC
Found at i:23872200 original size:32 final size:32
Alignment explanation
Indices: 23872134--23872200 Score: 89
Period size: 32 Copynumber: 2.1 Consensus size: 32
23872124 TGAGTATGAG
* * *
23872134 ATTGGTACAATATGGTACAGGTATGTATGAAA
1 ATTGGTACAAGATGGTACAAGTATGTACGAAA
* *
23872166 ATTGGTACGAGATGGTACAAGTATGTACGGAA
1 ATTGGTACAAGATGGTACAAGTATGTACGAAA
23872198 ATT
1 ATT
23872201 CAATTGAGTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.36, C:0.07, G:0.27, T:0.30
Consensus pattern (32 bp):
ATTGGTACAAGATGGTACAAGTATGTACGAAA
Found at i:23874945 original size:12 final size:12
Alignment explanation
Indices: 23874928--23874952 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23874918 CCATACACGC
23874928 CCGTGTGCTAGG
1 CCGTGTGCTAGG
23874940 CCGTGTGCTAGG
1 CCGTGTGCTAGG
23874952 C
1 C
23874953 TATGTCAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.40, T:0.24
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:23876755 original size:21 final size:20
Alignment explanation
Indices: 23876731--23876771 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
23876721 ACTTGTATAA
23876731 CTATCATCAAA-CATTCAAAAT
1 CTATCAT-AAATCA-TCAAAAT
23876752 CTATCATAAATCATCAAAAT
1 CTATCATAAATCATCAAAAT
23876772 ACATGCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (20 bp):
CTATCATAAATCATCAAAAT
Found at i:23879722 original size:21 final size:21
Alignment explanation
Indices: 23879696--23879753 Score: 57
Period size: 21 Copynumber: 2.7 Consensus size: 21
23879686 TTTCCAATAC
23879696 CAAATCATAGTCGAATCATT-T
1 CAAATCAT-GTCGAATCATTGT
*
23879717 CAAATCACTGTCTAATCATTGT
1 CAAATCA-TGTCGAATCATTGT
23879739 -AGAATCATGGTCGAA
1 CA-AATCAT-GTCGAA
23879754 CAAGTTCATA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
21 19 0.61
22 12 0.39
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (21 bp):
CAAATCATGTCGAATCATTGT
Found at i:23880543 original size:17 final size:18
Alignment explanation
Indices: 23880509--23880543 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23880499 CATAATGCGG
23880509 GCCCATGTGGCTCCACAT
1 GCCCATGTGGCTCCACAT
*
23880527 GCCCGTGTGGC-CCACAT
1 GCCCATGTGGCTCCACAT
23880544 AGCCTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.14, C:0.40, G:0.26, T:0.20
Consensus pattern (18 bp):
GCCCATGTGGCTCCACAT
Found at i:23885916 original size:40 final size:40
Alignment explanation
Indices: 23885819--23886002 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
23885809 TTGAATGCTG
* * * *
23885819 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
23885858 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * * *
23885899 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
23885939 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
23885979 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23886003 GTATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:23885959 original size:80 final size:81
Alignment explanation
Indices: 23885819--23885999 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
23885809 TTGAATGCTG
* *
23885819 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
23885883 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
* **
23885899 TTCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
23885960 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
23885979 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
23886000 ATTGTATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
79 4 0.05
80 75 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:23886023 original size:39 final size:38
Alignment explanation
Indices: 23885820--23886039 Score: 165
Period size: 40 Copynumber: 5.6 Consensus size: 38
23885810 TGAATGCTGT
* * * * *
23885820 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATAT
1 CCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTA-AA
** * *
23885860 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAATT
1 CCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGTTACTAA-A
* * * *
23885900 TCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGTGCGAGTTACTAA-A
*
23885940 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACT-AAA
**
23885979 TCCGGGTTAAGTCCCGAAGGCATTGTATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTA-AA
* *
23886019 CCGGGCTATGTCCCGAAGGCA
1 CCGGGTTAAGTCCCGAAGGCA
23886040 CTTGAACGAG
Statistics
Matches: 149, Mismatches: 21, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
39 33 0.22
40 108 0.72
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:23891308 original size:29 final size:27
Alignment explanation
Indices: 23891290--23891359 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
23891280 ATATTAAGTC
23891290 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
23891317 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
23891345 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
23891360 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:23891353 original size:28 final size:28
Alignment explanation
Indices: 23891290--23891384 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
23891280 ATATTAAGTC
*
23891290 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
23891317 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
23891345 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
23891374 CGCACACTTAG
1 CGCACACTTAG
23891385 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:23894159 original size:9 final size:9
Alignment explanation
Indices: 23894139--23894169 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
23894129 AAAATATCAT
23894139 ATTAATTTTA
1 ATTAA-TTTA
23894149 ATTAATTTA
1 ATTAATTTA
23894158 ATTAATTTA
1 ATTAATTTA
23894167 ATT
1 ATT
23894170 TTACTTGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
ATTAATTTA
Found at i:23896008 original size:46 final size:46
Alignment explanation
Indices: 23895936--23896054 Score: 157
Period size: 46 Copynumber: 2.6 Consensus size: 46
23895926 TTTGGGCATT
* * * *
23895936 CGAACTCATTAAGTTGAGTTCGAGTTCACTTATGGATGCGAACATC
1 CGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACATC
* *
23895982 CGAACTCGTTGAGTGGAGTCTGAGTTCACTTATGGATGCGAACGTC
1 CGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACATC
* * *
23896028 TGAATTCGTTGAGTTGAGTCCGAGTTC
1 CGAACTCGTTGAGTGGAGTCCGAGTTC
23896055 GTGAAATGTA
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 63 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (46 bp):
CGAACTCGTTGAGTGGAGTCCGAGTTCACTTATGGATGCGAACATC
Found at i:23900169 original size:40 final size:40
Alignment explanation
Indices: 23900139--23900322 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
23900129 GCTACTCATT
*
23900139 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
* *
23900179 CAAATGCCTTTGGGACTTAACCCGGATT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCACA
* * **
23900219 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCACA
* * * * * *
23900258 CCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAACTCA-CA
23900299 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
23900323 ACATCATTCG
Statistics
Matches: 120, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 77 0.64
41 11 0.09
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCACA
Found at i:23900283 original size:79 final size:81
Alignment explanation
Indices: 23900116--23900323 Score: 198
Period size: 79 Copynumber: 2.6 Consensus size: 81
23900106 CCTTCAGAAT
* * *
23900116 TTAA-CCGGATATAGCT-ACTCATTCA-AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCA
1 TTAACCCGGATATAG-TAACTCA-GCACAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCA
*
23900177 CACAAATGCCTTTGGGAC
64 CACAAATGCCTTTCGGAC
* **
23900195 TTAACCCGGATTTAGTAACTCA-CACCAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTTGC
1 TTAACCCGGATATAGTAACTCAGCA-CAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCAC
*
23900257 ACCAATGCC-TTCGGATC
65 ACAAATGCCTTTCGGA-C
** * * * *
23900274 TTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 TTAACCCGGATATAGTAACTCAGCACAATGCCTTCGGGACTTAGCCCGGA
23900324 CATCATTCGA
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
78 7 0.07
79 60 0.56
80 40 0.37
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (81 bp):
TTAACCCGGATATAGTAACTCAGCACAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACA
CAAATGCCTTTCGGAC
Found at i:23904541 original size:46 final size:46
Alignment explanation
Indices: 23904337--23904548 Score: 164
Period size: 46 Copynumber: 4.6 Consensus size: 46
23904327 TCCAAACTGA
* * * ** *
23904337 TTGAGTTGTGCCTGAGTT-GACTTATGGATGCGAGCATCCGAACTTG
1 TTGAGTTGAGTCTGAGTTCG-CTTATGGATGCGAACGCCCGAACTCG
* * * * * *
23904383 TTAAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTTG
1 TTGAGTTGAGTCTGAGTTCGCTTATGGATGCGAACGCCCGAACTCG
* * * * *
23904429 TTGAGTTGAGTCTGAGTTCG-TGA--AATG-TAACTAGGCTTACGAACTCA
1 TTGAGTTGAGTCTGAGTTCGCTTATGGATGCGAAC---GC--CCGAACTCG
* *
23904476 TTGAGTTGAGTCTGAGTTCGCTTATGGATGTGAACGCCCGAGCTCG
1 TTGAGTTGAGTCTGAGTTCGCTTATGGATGCGAACGCCCGAACTCG
23904522 TTGAGTTGAGTCTGAGTTCGCTTATGG
1 TTGAGTTGAGTCTGAGTTCGCTTATGG
23904549 GCGGGTTACA
Statistics
Matches: 132, Mismatches: 24, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
42 3 0.02
43 3 0.02
45 3 0.02
46 87 0.66
47 26 0.20
48 4 0.03
50 3 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.33
Consensus pattern (46 bp):
TTGAGTTGAGTCTGAGTTCGCTTATGGATGCGAACGCCCGAACTCG
Found at i:23907764 original size:45 final size:45
Alignment explanation
Indices: 23907690--23907777 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
23907680 AAATATGTGT
* *
23907690 CACATACATCATGAACTCATACCATAACTCAATGAGTTCAGATGC
1 CACATACATCATGAACTCATACCACAACTCAATGAGTTAAGATGC
*
23907735 CACATATATCATGAACTCA-ATCCACAACTCAATGAGTTAAGAT
1 CACATACATCATGAACTCATA-CCACAACTCAATGAGTTAAGAT
23907778 CACATAGTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.40, C:0.25, G:0.10, T:0.25
Consensus pattern (45 bp):
CACATACATCATGAACTCATACCACAACTCAATGAGTTAAGATGC
Found at i:23911188 original size:3 final size:3
Alignment explanation
Indices: 23911180--23911206 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
23911170 TGTTTATGAA
23911180 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
23911207 TAGTATGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:23916440 original size:20 final size:20
Alignment explanation
Indices: 23916397--23916444 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
23916387 GCTATTTTGT
23916397 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
23916417 -ATGGGCCCAACTGTGTT-AA
1 TATGGG-CCAACTGTATTGAA
23916436 TAT-GGCCAA
1 TATGGGCCAA
23916445 GGCCCAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 12 0.48
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:23916511 original size:60 final size:59
Alignment explanation
Indices: 23916435--23916571 Score: 161
Period size: 60 Copynumber: 2.3 Consensus size: 59
23916425 AACTGTGTTA
* * * *
23916435 ATATGGCCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAAT-GGGCTACGGCACAGATTAATACTG
* *
23916495 ATATGGGCTAGGCCCAATATACTCTGATACTGTAATGGGCTATGGCACAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAATGGGCTACGGCACAGATTAATACTG
23916555 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
23916572 GTTAACACTG
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
59 1 0.01
60 50 0.75
61 16 0.24
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAATGGGCTACGGCACAGATTAATACTG
Found at i:23916583 original size:27 final size:28
Alignment explanation
Indices: 23916529--23916583 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
23916519 TGATACTGTA
* * *
23916529 ATGGGCTATGGCACAGATTAATATTGAT
1 ATGGGCTAAGGCACAGATTAACACTGAT
*
23916557 ATGGGCTAAGGCCCAG-TTAACACTGAT
1 ATGGGCTAAGGCACAGATTAACACTGAT
23916584 TTCTGAATAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (28 bp):
ATGGGCTAAGGCACAGATTAACACTGAT
Found at i:23921977 original size:45 final size:45
Alignment explanation
Indices: 23921913--23922035 Score: 183
Period size: 45 Copynumber: 2.7 Consensus size: 45
23921903 CGCATACATC
* *
23921913 ATGAACTTAAACCATAACTCAATGAGTTCAGATGCCATATATATA
1 ATGAACTCAAACCACAACTCAATGAGTTCAGATGCCATATATATA
*
23921958 ATGAACTCAAACCACAACTCAATGAGTTCAGATGCCATATATATC
1 ATGAACTCAAACCACAACTCAATGAGTTCAGATGCCATATATATA
* * **
23922003 TTGAAATCGGACCACAACTCAATGAGTTCAGAT
1 ATGAACTCAAACCACAACTCAATGAGTTCAGAT
23922036 CACATAGTTC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (45 bp):
ATGAACTCAAACCACAACTCAATGAGTTCAGATGCCATATATATA
Found at i:23937978 original size:31 final size:31
Alignment explanation
Indices: 23937929--23938007 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
23937919 TTTAACAGTT
23937929 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
* * * *
23937960 ATTGGGCCAGAGCGTTTTCATAAATCATTTC
1 ACTGGGCCAAAGCCTTTTCATAAATCATATC
**
23937991 ACTGGGCTGAAGCCTTT
1 ACTGGGCCAAAGCCTTT
23938008 ACTGTAAACG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (31 bp):
ACTGGGCCAAAGCCTTTTCATAAATCATATC
Found at i:23938078 original size:42 final size:42
Alignment explanation
Indices: 23938031--23938122 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
23938021 TGGCCTATAG
* ** *
23938031 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
23938073 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
23938115 GCCCATTT
1 GCCCATTT
23938123 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:23939196 original size:27 final size:27
Alignment explanation
Indices: 23939117--23939204 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
23939107 TATTCGTCAT
* *
23939117 TTTACCATACAGGGG-TATTACGGTCAC
1 TTTACCTTACAGGGGCT-TTACGGTCTC
*
23939144 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCTTACAGGGGCTTTACGGTCTC
*
23939171 TTTACCTTACAGGGGCTTTACGGTCTT
1 TTTACCTTACAGGGGCTTTACGGTCTC
23939198 TTTACCT
1 TTTACCT
23939205 AATATGGGTA
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
27 55 0.98
28 1 0.02
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
TTTACCTTACAGGGGCTTTACGGTCTC
Found at i:23939287 original size:27 final size:27
Alignment explanation
Indices: 23939244--23939472 Score: 190
Period size: 27 Copynumber: 8.4 Consensus size: 27
23939234 CAATGGTGTC
* * *
23939244 TTGGTAAATCTACAAACCAACGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
** ** *
23939271 TCAGTAATTTTGTAAACCAATGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
*** * *
23939298 TCCATAAGTTTTAGAAAGTCAAGGGTATT
1 TTGGTAA-TTTTACAAA-CCAAGGGTATT
* ** * *
23939327 TCT-GTAACTTTGTAAATCAGGGGTATT
1 T-TGGTAATTTTACAAACCAAGGGTATT
*** *
23939354 TTGGTAATTTTACAAATTGATGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
*
23939381 TTGGTAATTTCACAAACCAAGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
* *
23939408 TTGGTAATTTTACAAACTAGGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
23939435 TTGGTAATTTTACAAACCAAGGGTATT
1 TTGGTAATTTTACAAACCAAGGGTATT
*
23939462 TTAGTAATTTT
1 TTGGTAATTTT
23939473 GTAAATTGAG
Statistics
Matches: 161, Mismatches: 37, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
26 1 0.01
27 134 0.83
28 13 0.08
29 13 0.08
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.39
Consensus pattern (27 bp):
TTGGTAATTTTACAAACCAAGGGTATT
Found at i:23939493 original size:27 final size:27
Alignment explanation
Indices: 23939463--23939648 Score: 212
Period size: 27 Copynumber: 6.9 Consensus size: 27
23939453 AAGGGTATTT
* *
23939463 TAGTAATTTTGTAAATTGAGAGTAAAA
1 TAGTAATTTTGTAAATCGAGGGTAAAA
* *
23939490 TAGTAATTCTGTAAATCAAGGGTAAAA
1 TAGTAATTTTGTAAATCGAGGGTAAAA
* *
23939517 CAGTAATTCTGTAAATCGAGGGTAAAA
1 TAGTAATTTTGTAAATCGAGGGTAAAA
*
23939544 -CGATAATTTTGTAAATCGAGGGTAAAA
1 TAG-TAATTTTGTAAATCGAGGGTAAAA
** *
23939571 CGGTAATTTTATAAATCGAGGGTAAAA
1 TAGTAATTTTGTAAATCGAGGGTAAAA
* * *
23939598 TGGTAATTATGTAAATCGAAGGTAAAA
1 TAGTAATTTTGTAAATCGAGGGTAAAA
* * *
23939625 TGGTAATTATGTAAATCGGGGGTA
1 TAGTAATTTTGTAAATCGAGGGTA
23939649 CTTTGGTAAT
Statistics
Matches: 141, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
26 1 0.01
27 139 0.99
28 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.23, T:0.31
Consensus pattern (27 bp):
TAGTAATTTTGTAAATCGAGGGTAAAA
Found at i:23939496 original size:54 final size:54
Alignment explanation
Indices: 23939384--23939497 Score: 122
Period size: 54 Copynumber: 2.1 Consensus size: 54
23939374 TGGTATTTTG
* * *** *
23939384 GTAATTTCACAAACCAAGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GTAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGAGTAAAATA
* ** *
23939438 GTAATTTTACAAACCAAGGGTATTTTAGTAATTTTGTAAA-TTGAGAGTAAAATA
1 GTAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAACTAG-GAGTAAAATA
23939492 GTAATT
1 GTAATT
23939498 CTGTAAATCA
Statistics
Matches: 49, Mismatches: 10, Indels: 2
0.80 0.16 0.03
Matches are distributed among these distances:
53 2 0.04
54 47 0.96
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (54 bp):
GTAATTTCACAAACCAAGGGTATTTTAGTAATTTTACAAACTAGGAGTAAAATA
Found at i:23939656 original size:54 final size:53
Alignment explanation
Indices: 23939465--23939675 Score: 210
Period size: 54 Copynumber: 3.9 Consensus size: 53
23939455 GGGTATTTTA
* * * * *
23939465 GTAATTTTGTAAATTGAGAGTAAAATAGTAATTCTGTAAATC-AAGGGTAAAACA
1 GTAATTATGTAAATCGAGGGTAAAATGGTAATT-TGTAAATCGAA-GGTAAAACG
* * * *
23939519 GTAATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTATGTAAATCGAGGGTAAAATGGTAA-TTTGTAAATCGAAGGTAAAACG
* * *
23939573 GTAATTTTATAAATCGAGGGTAAAATGGTAATTATGTAAATCGAAGGTAAAATG
1 GTAATTATGTAAATCGAGGGTAAAATGGTAATT-TGTAAATCGAAGGTAAAACG
* ***
23939627 GTAATTATGTAAATCGGGGGTACTTTGGTAATTT-TACAAGTCGAAGGTA
1 GTAATTATGTAAATCGAGGGTAAAATGGTAATTTGTA-AA-TCGAAGGTA
23939676 TTTCAATAAT
Statistics
Matches: 132, Mismatches: 20, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
52 2 0.02
53 5 0.04
54 122 0.92
55 3 0.02
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (53 bp):
GTAATTATGTAAATCGAGGGTAAAATGGTAATTTGTAAATCGAAGGTAAAACG
Found at i:23939675 original size:27 final size:27
Alignment explanation
Indices: 23939654--23939743 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
23939644 GGGTACTTTG
*
23939654 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* *
23939681 ATAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
23939708 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
23939735 GTAATTTTA
1 GTAATTTTA
23939744 GTAAACTAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.04
27 51 0.96
ACGTcount: A:0.33, C:0.10, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:23939757 original size:27 final size:27
Alignment explanation
Indices: 23939654--23939758 Score: 81
Period size: 27 Copynumber: 3.9 Consensus size: 27
23939644 GGGTACTTTG
* *
23939654 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* * *
23939681 ATAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
23939708 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
23939735 GTAATTTTAGTAAACTAA-AGTATT
1 GTAATTTTA-CAAACTAAGAGTATT
23939759 CTAAACAGGG
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
26 2 0.03
27 53 0.84
28 8 0.13
ACGTcount: A:0.35, C:0.10, G:0.16, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:23942017 original size:31 final size:30
Alignment explanation
Indices: 23941941--23942019 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 30
23941931 TTTAAAGGTT
23941941 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGG-CGAAGCCTTTTCATAAATCATATC
* * * *
23941972 ACTAGGCCAGAGCCTTTTCATATATCATTTC
1 ACTGGGCGA-AGCCTTTTCATAAATCATATC
23942003 ACTGGGCTGAAGCCTTT
1 ACTGGGC-GAAGCCTTT
23942020 ACTGTAAACG
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
30 2 0.05
31 37 0.93
32 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (30 bp):
ACTGGGCGAAGCCTTTTCATAAATCATATC
Found at i:23942090 original size:42 final size:42
Alignment explanation
Indices: 23942043--23942134 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
23942033 TGGCCTATAG
* * ** *
23942043 GCCCATTTCAATATCCCATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
23942085 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
23942127 GCCCATTT
1 GCCCATTT
23942135 GGGGAGACTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:23942324 original size:26 final size:26
Alignment explanation
Indices: 23942279--23942375 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
23942269 CCTCTTTAAT
23942279 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
***
23942304 AACTGGGGCATAAGCCCTTTTTAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
23942330 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
23942356 AACT-GGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
23942376 GCACTTCCTC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
25 26 0.40
26 39 0.60
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:23942364 original size:51 final size:50
Alignment explanation
Indices: 23942273--23942375 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 50
23942263 GCCTAGCCTC
23942273 TTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTT
1 TTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTT
23942323 TTTAATAAACTGGGGCATAAGCCCTTTTCGGTAAACT-GGGCATAAGCCCTT
1 TTTAAT-AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTT
23942374 TT
1 TT
23942376 GCACTTCCTC
Statistics
Matches: 51, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
50 6 0.12
51 26 0.51
52 19 0.37
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (50 bp):
TTTAATAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTT
Found at i:23943235 original size:27 final size:27
Alignment explanation
Indices: 23943196--23943265 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
23943186 ATATAGGGTA
* * *
23943196 TTACAGTCACTTTACCCTACAGGGGCT
1 TTACGGTCTCTTTACCCTACAGAGGCT
23943223 TTACGGTCTCTTTACCCTACAGAGGCT
1 TTACGGTCTCTTTACCCTACAGAGGCT
*
23943250 TTACGGTCTTTTTACC
1 TTACGGTCTCTTTACC
23943266 TAATAGGGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.36
Consensus pattern (27 bp):
TTACGGTCTCTTTACCCTACAGAGGCT
Found at i:23943349 original size:27 final size:27
Alignment explanation
Indices: 23943319--23943601 Score: 138
Period size: 27 Copynumber: 10.4 Consensus size: 27
23943309 GTAAATCTAC
*
23943319 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
23943346 AAACCAATGGTATTTCCA-TAATTTTTAG
1 AAACCAAGGGTATTT-CAGTAA-TTTTAT
* * * *
23943374 AAAGTCAAGGGTATTTCTGTAACTTTGT
1 AAA-CCAAGGGTATTTCAGTAATTTTAT
* * ** *
23943402 AAATCAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
*** * * *
23943429 AAATTGAGGGTATTTCGGTAATTTCAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
23943456 AAACCAATGATATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * ** *
23943483 AAACTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
23943510 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* * *** *
23943537 AAATCGAGGGTAAAACAGTAATTCT-T
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *** *
23943563 AAATCAAGGGTAAAACAGTAATTCTAT
1 AAACCAAGGGTATTTCAGTAATTTTAT
* *
23943590 AAATCGAGGGTA
1 AAACCAAGGGTA
23943602 AAACGGTAAT
Statistics
Matches: 206, Mismatches: 45, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
26 25 0.12
27 152 0.74
28 16 0.08
29 13 0.06
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.36
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTAT
Found at i:23943470 original size:54 final size:54
Alignment explanation
Indices: 23943412--23943548 Score: 177
Period size: 54 Copynumber: 2.5 Consensus size: 54
23943402 AAATCAGGGG
*
23943412 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAATGA
1 TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGA
* * * *
23943466 TATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAAGGG
1 TATTTTGGTAATTTTACAAATTGA-GGGTATTTCGGTAATTTCACAAACCAAGGA
* ** *
23943520 TATTTTAGTAATTTTGTAAATCGAGGGTA
1 TATTTTGGTAATTTTACAAATTGAGGGTA
23943549 AAACAGTAAT
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
53 1 0.01
54 69 0.97
55 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (54 bp):
TATTTTGGTAATTTTACAAATTGAGGGTATTTCGGTAATTTCACAAACCAAGGA
Found at i:23943643 original size:54 final size:54
Alignment explanation
Indices: 23943536--23943728 Score: 273
Period size: 54 Copynumber: 3.6 Consensus size: 54
23943526 AGTAATTTTG
* * *
23943536 TAAATCGAGGGTAAAACAGTAATTCT-TAAATCAAGGGTAAAAC-AGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGA-TAATTCTA
*
23943589 TAAATCGAGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGATAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGATAATTCTA
* * * *
23943643 TAAATCGAGGGTAAAATGGTAATTATGTAAATCGGGGGTAAAACGATAATTATG
1 TAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGATAATTCTA
* *
23943697 TAAATCGGGGGTAAAACGATAATTATGTAAAT
1 TAAATCGAGGGTAAAACGGTAATTATGTAAAT
23943729 TGGGGGTACT
Statistics
Matches: 128, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
53 25 0.20
54 102 0.80
55 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.22, T:0.27
Consensus pattern (54 bp):
TAAATCGAGGGTAAAACGGTAATTATGTAAATCGAGGGTAAAACGATAATTCTA
Found at i:23943682 original size:81 final size:80
Alignment explanation
Indices: 23943527--23943720 Score: 273
Period size: 81 Copynumber: 2.4 Consensus size: 80
23943517 GGGTATTTTA
* *
23943527 GTAATTTTGTAAATCGAGGGTAAAAC-AGTAATTCTTAAATCAAGGGTAAAACAGTAATTCTATA
1 GTAATTATGTAAATCGAGGGTAAAACGA-TAATTCTTAAATCAAGGGTAAAACAGTAATTATATA
23943591 AATCGAGGGTAAAACG
65 AATCGAGGGTAAAACG
* * ** *
23943607 GTAATTCTGTAAATCGAGGGTAAAACGATAATTCTATAAATCGAGGGTAAAATGGTAATTATGTA
1 GTAATTATGTAAATCGAGGGTAAAACGATAATTCT-TAAATCAAGGGTAAAACAGTAATTATATA
*
23943672 AATCGGGGGTAAAACG
65 AATCGAGGGTAAAACG
* *
23943688 ATAATTATGTAAATCGGGGGTAAAACGATAATT
1 GTAATTATGTAAATCGAGGGTAAAACGATAATT
23943721 ATGTAAATTG
Statistics
Matches: 102, Mismatches: 10, Indels: 3
0.89 0.09 0.03
Matches are distributed among these distances:
80 32 0.31
81 70 0.69
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (80 bp):
GTAATTATGTAAATCGAGGGTAAAACGATAATTCTTAAATCAAGGGTAAAACAGTAATTATATAA
ATCGAGGGTAAAACG
Found at i:23943736 original size:27 final size:27
Alignment explanation
Indices: 23943528--23943728 Score: 246
Period size: 27 Copynumber: 7.5 Consensus size: 27
23943518 GGTATTTTAG
*
23943528 TAATTTTGTAAATCGAGGGTAAAAC-A
1 TAATTATGTAAATCGAGGGTAAAACGA
* *
23943554 GTAATTCT-TAAATCAAGGGTAAAAC-A
1 -TAATTATGTAAATCGAGGGTAAAACGA
* * *
23943580 GTAATTCTATAAATCGAGGGTAAAACGG
1 -TAATTATGTAAATCGAGGGTAAAACGA
*
23943608 TAATTCTGTAAATCGAGGGTAAAACGA
1 TAATTATGTAAATCGAGGGTAAAACGA
* * * *
23943635 TAATTCTATAAATCGAGGGTAAAATGG
1 TAATTATGTAAATCGAGGGTAAAACGA
*
23943662 TAATTATGTAAATCGGGGGTAAAACGA
1 TAATTATGTAAATCGAGGGTAAAACGA
*
23943689 TAATTATGTAAATCGGGGGTAAAACGA
1 TAATTATGTAAATCGAGGGTAAAACGA
23943716 TAATTATGTAAAT
1 TAATTATGTAAAT
23943729 TGGGGGTACT
Statistics
Matches: 158, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
26 25 0.16
27 133 0.84
ACGTcount: A:0.42, C:0.08, G:0.21, T:0.28
Consensus pattern (27 bp):
TAATTATGTAAATCGAGGGTAAAACGA
Found at i:23943763 original size:27 final size:27
Alignment explanation
Indices: 23943742--23943831 Score: 119
Period size: 27 Copynumber: 3.3 Consensus size: 27
23943732 GGGTACTTTG
*
23943742 GTAATTTTACAAGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
23943769 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
23943796 GTATTTTTACAAA-CTAAGGGTATTTCG
1 GTAATTTTACAAATCGAA-GGTATTTCA
23943823 GTAATTTTA
1 GTAATTTTA
23943832 GTAAACTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:23943845 original size:27 final size:27
Alignment explanation
Indices: 23943742--23943847 Score: 92
Period size: 27 Copynumber: 3.9 Consensus size: 27
23943732 GGGTACTTTG
* *
23943742 GTAATTTTACAAGTCGAAG-GTATTTCA
1 GTAATTTTACAA-ACTAAGAGTATTTCA
* *
23943769 GTAATTTTACAAA-TCGAGGGTATTTCA
1 GTAATTTTACAAACT-AAGAGTATTTCA
* * *
23943796 GTATTTTTACAAACTAAGGGTATTTCG
1 GTAATTTTACAAACTAAGAGTATTTCA
*
23943823 GTAATTTTAGTAAACTAA-AGTATTT
1 GTAATTTTA-CAAACTAAGAGTATTT
23943848 TAAACAGGGA
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
26 2 0.03
27 56 0.85
28 8 0.12
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
GTAATTTTACAAACTAAGAGTATTTCA
Found at i:23950038 original size:13 final size:14
Alignment explanation
Indices: 23950004--23950040 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
23949994 CAATGAATAT
23950004 ACCATTATAATTAA
1 ACCATTATAATTAA
*
23950018 ACCATTATGATTAA
1 ACCATTATAATTAA
23950032 A-CATTATAA
1 ACCATTATAA
23950041 ATATTTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.35
Consensus pattern (14 bp):
ACCATTATAATTAA
Found at i:23951132 original size:12 final size:12
Alignment explanation
Indices: 23951115--23951140 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23951105 AAAATAGGGC
23951115 TTTAGCGGCGTT
1 TTTAGCGGCGTT
23951127 TTTAGCGGCGTT
1 TTTAGCGGCGTT
23951139 TT
1 TT
23951141 ATGAAAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:23951173 original size:40 final size:40
Alignment explanation
Indices: 23951129--23951482 Score: 239
Period size: 40 Copynumber: 8.8 Consensus size: 40
23951119 GCGGCGTTTT
* *
23951129 TAGCGGCGTTTTATGAAAAAATGCCAC-AAAAATTATA-CAA
1 TAGCGGCGTTTT-TGAAAAAACGCCACTAAAAA-TAGAGCAA
** *
23951169 TAGCGGCGTTTTTGGCAAAGCGCCACTAAAAATAGAGCAA
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAAATAGAGCAA
** * * * *
23951209 TAGCGGCGTTTTTGGCAAAGCACCGCTATAAATAGAGCAA
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAAATAGAGCAA
** *
23951249 TAGCGGCGTTTTTGGCAAAACGCCGCTAAAAATAGAGCAA
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAAATAGAGCAA
** * *
23951289 TAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAATAGAGCAA
1 TAGCGGCGTTTTTGAAAAAACGCCACT-AAAAATAGAGCAA
** * ** * *
23951330 TAGCGATGTTTGTGTCAAAACGCCGCTAAGAAACAGAGCAA
1 TAGCGGCGTTTTTGAAAAAACGCCACTAA-AAATAGAGCAA
** ** *
23951371 TAGCGGCGTTTTTGTCAAAGTGCCGCTAAAAA-ACTGAGCAA
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAAATA--GAGCAA
* * ** ** * * *
23951412 TAACAGCGTTTTTGGCAAAGTGCCGCTAAAAACAGAGAAA
1 TAGCGGCGTTTTTGAAAAAACGCCACTAAAAATAGAGCAA
* * *
23951452 TAGTGGCGTTTTTTG-TAAAACGCCTCTAAAA
1 TAGCGGCG-TTTTTGAAAAAACGCCACTAAAA
23951483 GTCATATAAC
Statistics
Matches: 272, Mismatches: 34, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
39 14 0.05
40 147 0.54
41 110 0.40
42 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (40 bp):
TAGCGGCGTTTTTGAAAAAACGCCACTAAAAATAGAGCAA
Found at i:23951333 original size:41 final size:40
Alignment explanation
Indices: 23951166--23951482 Score: 393
Period size: 40 Copynumber: 7.8 Consensus size: 40
23951156 AAAAATTATA
*
23951166 CAATAGCGGCGTTTTTGGCAAAGCGCCACTAAAAATAGAG
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAATAGAG
* *
23951206 CAATAGCGGCGTTTTTGGCAAAGCACCGCTATAAATAGAG
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAATAGAG
*
23951246 CAATAGCGGCGTTTTTGGCAAAACGCCGCTAAAAATAGAG
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAATAGAG
23951286 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAAATAGAG
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCT-AAAAATAGAG
** * * * *
23951327 CAATAGCGATGTTTGTGTCAAAACGCCGCTAAGAAACAGAG
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAA-AAATAGAG
* *
23951368 CAATAGCGGCGTTTTTGTCAAAGTGCCGCTAAAAA-ACTGAG
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAATA--GAG
* * * *
23951409 CAATAACAGCGTTTTTGGCAAAGTGCCGCTAAAAACAGAG
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAATAGAG
* * * * * *
23951449 AAATAGTGGCGTTTTTTGTAAAACGCCTCTAAAA
1 CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAA
23951483 GTCATATAAC
Statistics
Matches: 242, Mismatches: 30, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
39 1 0.00
40 136 0.56
41 104 0.43
42 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (40 bp):
CAATAGCGGCGTTTTTGGCAAAGCGCCGCTAAAAATAGAG
Found at i:23951481 original size:81 final size:80
Alignment explanation
Indices: 23951166--23951482 Score: 386
Period size: 81 Copynumber: 3.9 Consensus size: 80
23951156 AAAAATTATA
* * * *
23951166 CAATAGCGGCGTTTTTGGCAAAGCGCCACTAAAAATAGAGCAATAGCGGCGTTTTTGGCAAAGCA
1 CAATAGC-GCGTTTTTGGCAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCG
*
23951231 CCGCT-ATAAATAGAG
65 CCGCTAAAAAATAGAG
*
23951246 CAATAGCGGCGTTTTTGGCAAAACGCCGCTAAAAATAGAGCAATAGCGGCGTTTTTGGCAAAGCG
1 CAATAGC-GCGTTTTTGGCAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCG
23951311 CCGCTAAAAAATAGAG
65 CCGCTAAAAAATAGAG
* * * * *
23951327 CAATAGCGATGTTTGTGTCAAAACGCCGCTAAGAAACAGAGCAATAGCGGCGTTTTTGTCAAAGT
1 CAATAGCG-CGTTTTTGGCAAAACGCCGCTAA-AAACAGAGCAATAGCGGCGTTTTTGGCAAAGC
23951392 GCCGCTAAAAAACT-GAG
64 GCCGCTAAAAAA-TAGAG
* ** * * * * *
23951409 CAATAACAGCGTTTTTGGCAAAGTGCCGCTAAAAACAGAGAAATAGTGGCGTTTTTTGTAAAACG
1 CAATAGC-GCGTTTTTGGCAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCG
*
23951474 CCTCTAAAA
65 CCGCTAAAA
23951483 GTCATATAAC
Statistics
Matches: 208, Mismatches: 24, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
80 68 0.33
81 70 0.34
82 68 0.33
83 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (80 bp):
CAATAGCGCGTTTTTGGCAAAACGCCGCTAAAAACAGAGCAATAGCGGCGTTTTTGGCAAAGCGC
CGCTAAAAAATAGAG
Found at i:23951557 original size:48 final size:47
Alignment explanation
Indices: 23951482--23951612 Score: 183
Period size: 48 Copynumber: 2.8 Consensus size: 47
23951472 CGCCTCTAAA
* *
23951482 AGTCATATAACCCCTAAAACCTTAAACCCCAAAAAATCATAGACACT
1 AGTCATATAACCCCTAAAACCTTAAACCCCAAAAAACCATAAACACT
* * *
23951529 AGTCTATATAACCCCTAAAACCCTAAACCCAAAAAAACCCTAAACACT
1 AGTC-ATATAACCCCTAAAACCTTAAACCCCAAAAAACCATAAACACT
* *
23951577 AATC-TATAACCCCCAAAACCTTAAACCCCAAAAAAC
1 AGTCATATAACCCCTAAAACCTTAAACCCCAAAAAAC
23951613 ATCATATGGA
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
46 29 0.39
47 4 0.05
48 41 0.55
ACGTcount: A:0.48, C:0.33, G:0.02, T:0.17
Consensus pattern (47 bp):
AGTCATATAACCCCTAAAACCTTAAACCCCAAAAAACCATAAACACT
Found at i:23952213 original size:19 final size:20
Alignment explanation
Indices: 23952184--23952221 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
23952174 TAAAAAATAT
23952184 ATTGATAAATAAATAAAAAC
1 ATTGATAAATAAATAAAAAC
23952204 ATTGAT-AATAAATAAAAA
1 ATTGATAAATAAATAAAAA
23952222 TGAAATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.66, C:0.03, G:0.05, T:0.26
Consensus pattern (20 bp):
ATTGATAAATAAATAAAAAC
Found at i:23953165 original size:7 final size:7
Alignment explanation
Indices: 23953156--23953218 Score: 72
Period size: 8 Copynumber: 8.4 Consensus size: 7
23953146 AAAAATTTTG
*
23953156 AAAATTG
1 AAAATTA
*
23953163 AAAATTG
1 AAAATTA
23953170 AAAATTAA
1 AAAATT-A
23953178 AAAATTAA
1 AAAATT-A
23953186 AAAATTA
1 AAAATTA
23953193 AAAATTA
1 AAAATTA
23953200 AAAACTTA
1 AAAA-TTA
23953208 AAAACTTA
1 AAAA-TTA
23953216 AAA
1 AAA
23953219 TTTTAATATT
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
7 25 0.47
8 28 0.53
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.25
Consensus pattern (7 bp):
AAAATTA
Found at i:23953183 original size:8 final size:8
Alignment explanation
Indices: 23953170--23953218 Score: 73
Period size: 8 Copynumber: 6.2 Consensus size: 8
23953160 TTGAAAATTG
23953170 AAAATTAA
1 AAAATTAA
23953178 AAAATTAA
1 AAAATTAA
23953186 AAAATT-A
1 AAAATTAA
23953193 AAAATTAA
1 AAAATTAA
*
23953201 AAACTTAA
1 AAAATTAA
*
23953209 AAACTTAA
1 AAAATTAA
23953217 AA
1 AA
23953219 TTTTAATATT
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
7 7 0.18
8 32 0.82
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAATTAA
Found at i:23953189 original size:23 final size:22
Alignment explanation
Indices: 23953163--23953220 Score: 80
Period size: 23 Copynumber: 2.5 Consensus size: 22
23953153 TTGAAAATTG
23953163 AAAATTGAAAATTAAAAAATTAA
1 AAAATT-AAAATTAAAAAATTAA
*
23953186 AAAATTAAAAATTAAAAACTTAA
1 AAAATT-AAAATTAAAAAATTAA
*
23953209 AAACTTAAAATT
1 AAAATTAAAATT
23953221 TTAATATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
22 6 0.19
23 26 0.81
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (22 bp):
AAAATTAAAATTAAAAAATTAA
Found at i:23953392 original size:41 final size:40
Alignment explanation
Indices: 23953345--23953485 Score: 115
Period size: 41 Copynumber: 3.5 Consensus size: 40
23953335 AAAAATATGT
*
23953345 TAAAAATGACAAAAAAAATTGAGCAATAGTGACGTTTTTAG
1 TAAAAATG-CACAAAAAATTGAGCAATAGTGACGTTTTTAG
* * * * * *
23953386 TGAAAATGCTGCAAAAAGTTAAGCTATAGTGGCGTTTTTAG
1 TAAAAATGC-ACAAAAAATTGAGCAATAGTGACGTTTTTAG
* * * *
23953427 TAAAAACGCCACAAAAAATTGAG-ATACAATGGCGTTTTT-G
1 TAAAAATG-CACAAAAAATTGAGCA-ATAGTGACGTTTTTAG
*
23953467 TAAAAATGCTGCAAAAAAT
1 TAAAAATGC-ACAAAAAAT
23953486 CCCCAATTTT
Statistics
Matches: 79, Mismatches: 17, Indels: 9
0.75 0.16 0.09
Matches are distributed among these distances:
39 1 0.01
40 17 0.22
41 60 0.76
42 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.27
Consensus pattern (40 bp):
TAAAAATGCACAAAAAATTGAGCAATAGTGACGTTTTTAG
Found at i:23953482 original size:40 final size:41
Alignment explanation
Indices: 23953377--23953485 Score: 130
Period size: 41 Copynumber: 2.7 Consensus size: 41
23953367 GCAATAGTGA
* * * * *
23953377 CGTTTTTAGTGAAAATGCTGCAAAAAGTTAAGCTATAGTGG
1 CGTTTTTAGTAAAAATGCTGCAAAAAATTAAGATACAATGG
* ** *
23953418 CGTTTTTAGTAAAAACGCCACAAAAAATTGAGATACAATGG
1 CGTTTTTAGTAAAAATGCTGCAAAAAATTAAGATACAATGG
23953459 CGTTTTT-GTAAAAATGCTGCAAAAAAT
1 CGTTTTTAGTAAAAATGCTGCAAAAAAT
23953486 CCCCAATTTT
Statistics
Matches: 56, Mismatches: 12, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
40 17 0.30
41 39 0.70
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.29
Consensus pattern (41 bp):
CGTTTTTAGTAAAAATGCTGCAAAAAATTAAGATACAATGG
Found at i:23958149 original size:15 final size:15
Alignment explanation
Indices: 23958114--23958165 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23958104 TTAAGAATTT
*
23958114 TATTAAATTAT-ATA
1 TATTTAATTATAATA
23958128 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
23958142 TATTTAATAATAAT-
1 TATTTAATTATAATA
23958156 TATGTTAATT
1 TAT-TTAATT
23958166 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:23958158 original size:120 final size:120
Alignment explanation
Indices: 23958007--23958520 Score: 946
Period size: 120 Copynumber: 4.3 Consensus size: 120
23957997 TAAACAATAA
* *
23958007 ATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-TTTATAGTATCATATATT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-ATTTTATAGTATCATATATT
23958069 ATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
63 ATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
*
23958127 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
23958192 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
23958247 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
23958312 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
23958367 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
23958432 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATT-AATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
23958486 ATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT
23958521 TAAATATGAT
Statistics
Matches: 387, Mismatches: 4, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
119 49 0.13
120 336 0.87
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
Found at i:23958186 original size:59 final size:59
Alignment explanation
Indices: 23958123--23958520 Score: 252
Period size: 59 Copynumber: 6.7 Consensus size: 59
23958113 TTATTAAATT
*
23958123 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATC
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATC
* * * * * * * *
23958182 ATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
1 ATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
*
23958242 T
59 C
23958243 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATC
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATC
* * * * * * * *
23958302 ATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTATTA-AAT
1 ATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTAATTTA-TATTTTA-TAGTAT
*
23958362 T
59 C
23958363 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATC
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATC
* * * * * * *
23958422 ATATATTATGATTTGAGTAA-ATTCATATAAGAAT-ATTA-ATT-ATTAAGAATTTTAT--TAAT
1 ATATATT-TTAATT-A-TAATA-T-ATTTAATAATAATTATGTTAATTTA-TATTTTATAGT-AT
*
23958481 T
59 C
23958482 ATATATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATATATTTTAATTATAATATATTTAATAATAATTATGTT
23958521 TAAATATGAT
Statistics
Matches: 255, Mismatches: 50, Indels: 69
0.68 0.13 0.18
Matches are distributed among these distances:
56 8 0.03
57 24 0.09
58 24 0.09
59 50 0.20
60 49 0.19
61 49 0.19
62 27 0.11
63 24 0.09
ACGTcount: A:0.42, C:0.02, G:0.06, T:0.50
Consensus pattern (59 bp):
ATATATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATC
Found at i:23958269 original size:15 final size:15
Alignment explanation
Indices: 23958234--23958285 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23958224 TTAAGAATTT
*
23958234 TATTAAATTAT-ATA
1 TATTTAATTATAATA
23958248 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
23958262 TATTTAATAATAAT-
1 TATTTAATTATAATA
23958276 TATGTTAATT
1 TAT-TTAATT
23958286 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:23958389 original size:15 final size:15
Alignment explanation
Indices: 23958354--23958405 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23958344 TTAAGAATTT
*
23958354 TATTAAATTAT-ATA
1 TATTTAATTATAATA
23958368 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
23958382 TATTTAATAATAAT-
1 TATTTAATTATAATA
23958396 TATGTTAATT
1 TAT-TTAATT
23958406 TATATTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:23958489 original size:16 final size:16
Alignment explanation
Indices: 23958482--23958523 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
23958472 TTTATTAATT
23958482 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
23958498 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
23958513 AT-TATGTTTAA
1 ATATAT-TTTAA
23958524 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:23958494 original size:13 final size:15
Alignment explanation
Indices: 23958476--23958514 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
23958466 AAGAATTTTA
23958476 TTAATTAT-ATAT-T
1 TTAATTATAATATAT
23958489 TTAATTATAATATAT
1 TTAATTATAATATAT
*
23958504 TTAATAATAAT
1 TTAATTATAAT
23958515 TATGTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 4 0.17
15 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTAATTATAATATAT
Found at i:23958652 original size:18 final size:17
Alignment explanation
Indices: 23958624--23958658 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23958614 ATTATTAATA
*
23958624 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23958641 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23958659 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23958660 original size:155 final size:156
Alignment explanation
Indices: 23958458--23958764 Score: 546
Period size: 155 Copynumber: 2.0 Consensus size: 156
23958448 ATAAGAATAT
*
23958458 TAATTATTAAGAATTTTATTAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 TAATTATTAAGAATTTTATTAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
* *
23958523 AATATGATTAAATTATTTATTATTGATATTAATAATCTTATT-AAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
23958587 AATAATTTACCAAAA-AAATTTCTGC
131 AATAATTTACCAAAACAAATTTCTGC
*
23958612 TAATTATTAATAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATT-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
23958677 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
23958742 TAATCATTTACCAAAACAAATTT
130 TAATAATTTACCAAAACAAATTT
23958765 ATGTTAAGGG
Statistics
Matches: 145, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
154 19 0.13
155 84 0.58
156 36 0.25
157 6 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTCTGC
Found at i:23958873 original size:44 final size:45
Alignment explanation
Indices: 23958823--23958913 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
23958813 ACCTCTATTC
* * *
23958823 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
23958867 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
23958912 CA
1 CA
23958914 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:23958915 original size:16 final size:16
Alignment explanation
Indices: 23958894--23958962 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
23958884 GATTAGCTAT
23958894 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
23958910 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
*
23958927 TATACCTCTAATCCAA
1 TACACCTCTAATCCAA
23958943 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
23958959 TACA
1 TACA
23958963 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 35 0.70
17 15 0.30
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:23958939 original size:33 final size:32
Alignment explanation
Indices: 23958897--23958960 Score: 119
Period size: 33 Copynumber: 2.0 Consensus size: 32
23958887 TAGCTATTAC
23958897 ACCTCTAATCCAATACACCTCTAATCCCAATAT
1 ACCTCTAATCCAATACACCTCTAAT-CCAATAT
23958930 ACCTCTAATCCAATACACCTCTAATCCAATA
1 ACCTCTAATCCAATACACCTCTAATCCAATA
23958961 CAGCGAACCA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.19
33 25 0.81
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.27
Consensus pattern (32 bp):
ACCTCTAATCCAATACACCTCTAATCCAATAT
Found at i:23959807 original size:14 final size:15
Alignment explanation
Indices: 23959785--23959861 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
23959775 CAATCAAACA
23959785 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
23959799 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
23959814 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
23959834 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
23959848 ACGGAAAAT-ATTTT
1 CCAGAAAATCATTTT
23959862 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 21 0.42
15 15 0.30
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:23959826 original size:20 final size:20
Alignment explanation
Indices: 23959801--23959840 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
23959791 AATATTTTCC
*
23959801 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
23959821 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
23959841 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:23959846 original size:34 final size:35
Alignment explanation
Indices: 23959789--23959855 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
23959779 CAAACACCAG
*
23959789 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
23959824 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
23959856 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:23964419 original size:16 final size:17
Alignment explanation
Indices: 23964388--23964423 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
23964378 ATTTTTCATG
23964388 ATTTTTTATAATATTTT
1 ATTTTTTATAATATTTT
*
23964405 ATTTTTTTTAA-ATTTT
1 ATTTTTTATAATATTTT
23964421 ATT
1 ATT
23964424 ACCTTTAGCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
ATTTTTTATAATATTTT
Found at i:23964504 original size:43 final size:44
Alignment explanation
Indices: 23964427--23964515 Score: 112
Period size: 43 Copynumber: 2.0 Consensus size: 44
23964417 TTTTATTACC
*
23964427 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTGATGA-CT
1 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGATCT
* *
23964470 TTTAGCGGCGTTTTTGGGTAAAGCG-CTG-TCAAAGGTCATGATCT
1 TTTAGCGGCGTTTGTGGGAAAAGCGTC-GCT-AAAGGTCATGATCT
23964514 TT
1 TT
23964516 AGCTGCATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
42 2 0.05
43 34 0.85
44 4 0.10
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (44 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCATGATCT
Found at i:23964517 original size:43 final size:42
Alignment explanation
Indices: 23964426--23964527 Score: 109
Period size: 43 Copynumber: 2.4 Consensus size: 42
23964416 ATTTTATTAC
* *
23964426 CTTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTGATGA
1 CTTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCATGA
*
23964468 CTTTTAGCGGCGTTTTTGGGTAAAGCG-CTG-TCAAAGGTCATGA
1 C-TTTAGCGGCGTTTTTGGGAAAAGCGTC-GCT-AAAGGTCATGA
* *
23964511 TCTTTAGCTGCATTTTT
1 -CTTTAGCGGCGTTTTT
23964528 TTAAATAAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
42 3 0.06
43 47 0.92
44 1 0.02
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (42 bp):
CTTTAGCGGCGTTTTTGGGAAAAGCGTCGCTAAAGGTCATGA
Found at i:23968725 original size:9 final size:9
Alignment explanation
Indices: 23968711--23968837 Score: 77
Period size: 9 Copynumber: 14.1 Consensus size: 9
23968701 TATGTATTAC
*
23968711 GTAAGTTAA
1 GTAAGTTAT
*
23968720 GTAAGTTTT
1 GTAAGTTAT
23968729 GTAAGTTAT
1 GTAAGTTAT
23968738 GTAAGTTAT
1 GTAAGTTAT
*
23968747 G-ATA-TGAT
1 GTA-AGTTAT
* *
23968755 ATACATTTAT
1 GTA-AGTTAT
23968765 GT-A-TTAT
1 GTAAGTTAT
23968772 GTAAGTTAT
1 GTAAGTTAT
23968781 GTAAGTTAAGAT
1 GTAAGTT---AT
* *
23968793 ATATATTTAT
1 GTA-AGTTAT
23968803 GT-A-TTAT
1 GTAAGTTAT
*
23968810 GTAAGTTTT
1 GTAAGTTAT
*
23968819 GTAAGTTAC
1 GTAAGTTAT
23968828 GTAAGTTAT
1 GTAAGTTAT
23968837 G
1 G
23968838 ATATGATATA
Statistics
Matches: 92, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
7 12 0.13
8 8 0.09
9 58 0.63
10 7 0.08
12 4 0.04
13 3 0.03
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:23968776 original size:43 final size:40
Alignment explanation
Indices: 23968728--23968826 Score: 139
Period size: 38 Copynumber: 2.5 Consensus size: 40
23968718 AAGTAAGTTT
23968728 TGTAAGTTATGTAAGTTATGATATGATATACATTTATGTATTA
1 TGTAAGTTATGTAAGTTAT-A-A-GATATACATTTATGTATTA
*
23968771 TGTAAGTTATGTAAG-T-TAAGATATATATTTATGTATTA
1 TGTAAGTTATGTAAGTTATAAGATATACATTTATGTATTA
*
23968809 TGTAAGTTTTGTAAGTTA
1 TGTAAGTTATGTAAGTTA
23968827 CGTAAGTTAT
Statistics
Matches: 52, Mismatches: 2, Indels: 7
0.85 0.03 0.11
Matches are distributed among these distances:
38 32 0.62
39 2 0.04
40 1 0.02
41 1 0.02
42 1 0.02
43 15 0.29
ACGTcount: A:0.34, C:0.01, G:0.17, T:0.47
Consensus pattern (40 bp):
TGTAAGTTATGTAAGTTATAAGATATACATTTATGTATTA
Found at i:23968877 original size:51 final size:47
Alignment explanation
Indices: 23968774--23968877 Score: 118
Period size: 51 Copynumber: 2.1 Consensus size: 47
23968764 TGTATTATGT
* * * *
23968774 AAGTTATGTAAGTTAAGATATATATTTATGTATTATGTAAGTTTTGT
1 AAGTTACGTAAGTTAAGATATATATTTAAGTATTATGTAAGTTGTGG
*
23968821 AAGTTACGTAAGTTATGATATGATATATATAAGTTATTATGTAAGTTGTGG
1 AAGTTACGTAAGTTAAGATAT-ATAT-T-TAAG-TATTATGTAAGTTGTGG
*
23968872 GAGTTA
1 AAGTTA
23968878 TGTGTGCTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
47 19 0.40
48 4 0.09
49 1 0.02
50 3 0.06
51 20 0.43
ACGTcount: A:0.35, C:0.01, G:0.20, T:0.44
Consensus pattern (47 bp):
AAGTTACGTAAGTTAAGATATATATTTAAGTATTATGTAAGTTGTGG
Found at i:23969275 original size:27 final size:26
Alignment explanation
Indices: 23969244--23969302 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 26
23969234 TTAAATCATT
23969244 TTTAAAA-AAAAATAATTTGATTTTTA
1 TTTAAAATAAAAATAATTTGA-TTTTA
* * *
23969270 TATTAAAATAAATATTATTTTATTTTA
1 T-TTAAAATAAAAATAATTTGATTTTA
23969297 TTTAAA
1 TTTAAA
23969303 TTTCATAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 6 0.21
27 12 0.43
28 10 0.36
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (26 bp):
TTTAAAATAAAAATAATTTGATTTTA
Found at i:23970159 original size:29 final size:30
Alignment explanation
Indices: 23970127--23970192 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 30
23970117 AAATAATATG
23970127 ATATAT-AAATTTTGA-TTTAATTTAATTAT
1 ATATATGAAATTTT-ATTTTAATTTAATTAT
*
23970156 ATATATGAAATTTTATTTTTTATTTAATTAT
1 ATATATGAAATTTTA-TTTTAATTTAATTAT
*
23970187 ACATAT
1 ATATAT
23970193 TTTAAAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 7 0.22
30 7 0.22
31 18 0.56
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (30 bp):
ATATATGAAATTTTATTTTAATTTAATTAT
Done.