Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 74 of 259
Found at i:23972540 original size:7 final size:7
Alignment explanation
Indices: 23972524--23972634 Score: 64
Period size: 7 Copynumber: 16.0 Consensus size: 7
23972514 CTCTAAGCCT
*
23972524 TAAACTC
1 TAAACCC
23972531 TAAACCC
1 TAAACCC
*
23972538 TAAA-CA
1 TAAACCC
*
23972544 TAAACCT
1 TAAACCC
* *
23972551 TAGACTC
1 TAAACCC
*
23972558 TAAACCA
1 TAAACCC
*
23972565 TAAACCT
1 TAAACCC
* *
23972572 TAGACTC
1 TAAACCC
*
23972579 TAAACCA
1 TAAACCC
*
23972586 TAAACCT
1 TAAACCC
*
23972593 TTAACCC
1 TAAACCC
*
23972600 TTAACCCC
1 -TAAACCC
23972608 T-AACCC
1 TAAACCC
*
23972614 TAACCCC
1 TAAACCC
*
23972621 TAAACCT
1 TAAACCC
23972628 TAAACCC
1 TAAACCC
23972635 CAACTATTAA
Statistics
Matches: 75, Mismatches: 26, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
6 10 0.13
7 60 0.80
8 5 0.07
ACGTcount: A:0.41, C:0.35, G:0.02, T:0.23
Consensus pattern (7 bp):
TAAACCC
Found at i:23972568 original size:21 final size:21
Alignment explanation
Indices: 23972537--23972593 Score: 107
Period size: 21 Copynumber: 2.8 Consensus size: 21
23972527 ACTCTAAACC
23972537 CTAAA-CATAAACCTTAGACT
1 CTAAACCATAAACCTTAGACT
23972557 CTAAACCATAAACCTTAGACT
1 CTAAACCATAAACCTTAGACT
23972578 CTAAACCATAAACCTT
1 CTAAACCATAAACCTT
23972594 TAACCCTTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 5 0.14
21 31 0.86
ACGTcount: A:0.44, C:0.28, G:0.04, T:0.25
Consensus pattern (21 bp):
CTAAACCATAAACCTTAGACT
Found at i:23972582 original size:14 final size:14
Alignment explanation
Indices: 23972514--23972569 Score: 60
Period size: 14 Copynumber: 4.1 Consensus size: 14
23972504 AACCCCTATC
*
23972514 CTCTAAGCCTTAAA
1 CTCTAAACCTTAAA
*
23972528 CTCTAAACCCTAAA
1 CTCTAAACCTTAAA
* *
23972542 C-ATAAACCTTAGA
1 CTCTAAACCTTAAA
*
23972555 CTCTAAACCATAAA
1 CTCTAAACCTTAAA
23972569 C
1 C
23972570 CTTAGACTCT
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
13 10 0.30
14 23 0.70
ACGTcount: A:0.43, C:0.30, G:0.04, T:0.23
Consensus pattern (14 bp):
CTCTAAACCTTAAA
Found at i:23972626 original size:14 final size:14
Alignment explanation
Indices: 23972594--23972635 Score: 59
Period size: 13 Copynumber: 3.0 Consensus size: 14
23972584 CATAAACCTT
23972594 TAACCCTTAACCCC
1 TAACCCTTAACCCC
23972608 TAACCC-TAACCCC
1 TAACCCTTAACCCC
*
23972621 TAAACCTTAAACCCC
1 TAACCCTT-AACCCC
23972636 AACTATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 12 0.48
14 7 0.28
15 6 0.24
ACGTcount: A:0.33, C:0.48, G:0.00, T:0.19
Consensus pattern (14 bp):
TAACCCTTAACCCC
Found at i:23972633 original size:21 final size:21
Alignment explanation
Indices: 23972609--23972687 Score: 52
Period size: 21 Copynumber: 3.7 Consensus size: 21
23972599 CTTAACCCCT
* *
23972609 AACCCTAACCCCTAAACCTTA
1 AACCCTAAACCATAAACCTTA
* * *
23972630 AACCC-CAACTATTAAACCATA
1 AACCCTAAACCA-TAAACCTTA
* * *
23972651 AACCATAAACCATAAGCCATA
1 AACCCTAAACCATAAACCTTA
*
23972672 ACCCCTAAACTCATAA
1 AACCCTAAAC-CATAA
23972688 TTCATAAACC
Statistics
Matches: 44, Mismatches: 11, Indels: 5
0.73 0.18 0.08
Matches are distributed among these distances:
20 2 0.05
21 33 0.75
22 9 0.20
ACGTcount: A:0.46, C:0.35, G:0.01, T:0.18
Consensus pattern (21 bp):
AACCCTAAACCATAAACCTTA
Found at i:23972652 original size:7 final size:7
Alignment explanation
Indices: 23972642--23972752 Score: 64
Period size: 7 Copynumber: 15.6 Consensus size: 7
23972632 CCCCAACTAT
23972642 TAAACCA
1 TAAACCA
23972649 TAAACCA
1 TAAACCA
23972656 TAAACCA
1 TAAACCA
*
23972663 TAAGCCA
1 TAAACCA
* *
23972670 TAACCCC
1 TAAACCA
23972677 TAAACTCA
1 TAAAC-CA
**
23972685 TAATTCA
1 TAAACCA
*
23972692 TAAACCT
1 TAAACCA
23972699 TAAA--A
1 TAAACCA
*
23972704 TAGTAACTCC
1 TA--AAC-CA
*
23972714 TAAACCT
1 TAAACCA
23972721 TAAACCA
1 TAAACCA
* *
23972728 TGAATCA
1 TAAACCA
* *
23972735 TATACCC
1 TAAACCA
23972742 TAAACCA
1 TAAACCA
23972749 TAAA
1 TAAA
23972753 TCCTAAATTA
Statistics
Matches: 76, Mismatches: 22, Indels: 12
0.69 0.20 0.11
Matches are distributed among these distances:
5 2 0.03
7 65 0.86
8 7 0.09
10 2 0.03
ACGTcount: A:0.48, C:0.27, G:0.03, T:0.23
Consensus pattern (7 bp):
TAAACCA
Found at i:23972702 original size:22 final size:20
Alignment explanation
Indices: 23972647--23972751 Score: 75
Period size: 22 Copynumber: 5.0 Consensus size: 20
23972637 ACTATTAAAC
* *
23972647 CATAAACCATAAACCATAAGC
1 CATAAACCCTAAACCATAA-T
*
23972668 CATAACCCCTAAACTCATAATT
1 CATAAACCCTAAAC-CATAA-T
* **
23972690 CATAAACCTTAAAATAGTAACT
1 CATAAACCCTAAACCA-TAA-T
* *
23972712 CCTAAACCTTAAACCATGAAT
1 CATAAACCCTAAACCAT-AAT
*
23972733 CATATACCCTAAACCATAA
1 CATAAACCCTAAACCATAA
23972752 ATCCTAAATT
Statistics
Matches: 66, Mismatches: 15, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
20 2 0.03
21 29 0.44
22 35 0.53
ACGTcount: A:0.47, C:0.28, G:0.03, T:0.23
Consensus pattern (20 bp):
CATAAACCCTAAACCATAAT
Found at i:23973079 original size:40 final size:40
Alignment explanation
Indices: 23973034--23973118 Score: 116
Period size: 40 Copynumber: 2.1 Consensus size: 40
23973024 GAAAAACGCT
* * *
23973034 GCTAATGCTCGACCTATAGTGGCGTTTTTCAAAAAGCACA
1 GCTAATGCTCGACCTACAGCGGCATTTTTCAAAAAGCACA
* * *
23973074 GCTAATGCTCGATCTACAGCGGCATTTTTCAAAAGGCACC
1 GCTAATGCTCGACCTACAGCGGCATTTTTCAAAAAGCACA
23973114 GCTAA
1 GCTAA
23973119 AGCCACTAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (40 bp):
GCTAATGCTCGACCTACAGCGGCATTTTTCAAAAAGCACA
Found at i:23973376 original size:40 final size:39
Alignment explanation
Indices: 23973320--23973470 Score: 149
Period size: 40 Copynumber: 3.8 Consensus size: 39
23973310 TAGTTTTTTT
* *
23973320 GCGGCGTTTTTGAAAAAGCGCCGCTAATGGTCGACCTACA
1 GCGGCGTTTTT-AAAAAGCGCCGCTAATGCTAGACCTACA
* * * * *
23973360 GCGGCGTTTCTTAAAAAGCACCGCTAATACTATATCTATA
1 GCGGCGTTT-TTAAAAAGCGCCGCTAATGCTAGACCTACA
** *
23973400 GCGGCGTTTTTAAGAAAGCGCCGCTAATGCTAGTTCTATA
1 GCGGCGTTTTTAA-AAAGCGCCGCTAATGCTAGACCTACA
* * *
23973440 GTGGCATTTTTCAAAAAGCGTCGCTAATGCT
1 GCGGCGTTTTT-AAAAAGCGCCGCTAATGCT
23973471 CGATCTTTTC
Statistics
Matches: 94, Mismatches: 14, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
39 4 0.04
40 86 0.91
41 4 0.04
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (39 bp):
GCGGCGTTTTTAAAAAGCGCCGCTAATGCTAGACCTACA
Found at i:23973427 original size:155 final size:151
Alignment explanation
Indices: 23973007--23973429 Score: 462
Period size: 155 Copynumber: 2.7 Consensus size: 151
23972997 TAAATTATAC
* * *
23973007 TTTTTGCGGTGCA-TTTTGAAAAA-CGCTGCTAATGCTCGACCTATAGTGGCGTTTTTCAAAAAG
1 TTTTTGC-G-GCATTTTTGAAAAAGCGCCGCTAATGGTCGACCTATAGCGGCGTTTTT-AAAAAG
* * * * * *
23973070 CACAGCTAATGCTCGATCTACAGCGGCATTTTTCAAAAGGCACCGCTAAAGCCACTAAAGCTAAA
63 CACCGCTAATGCT-TATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTAAA
*
23973135 AAAAACCGACGGCGTTGTGCTTAGT
127 AAAAACCGACGGCGTGGTGCTTAGT
* * ** * *
23973160 TTTTTGTGGCATTTTTCAAATTGCGCCGCTAATGGTCGACCTATAGCGGCGTTTTTAGAGAA-CG
1 TTTTTGCGGCATTTTTGAAAAAGCGCCGCTAATGGTCGACCTATAGCGGCGTTTTTA-AAAAGCA
* *
23973224 CCGCTAATGGTTGATCTATAGCGG-ATTTTTTTCAAAAAGCGCCTCTAATGCCACTAAAGCTCAA
65 CCGCTAATGCTT-ATCTATAGCGGCA--TTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCT-AA
* *
23973288 CATAAAA-CGACGTCGTGGTGCTTAGTT
126 -AAAAAACCGACGGCGTGGTGCTTAG-T
* *
23973315 TTTTTGCGGCGTTTTTGAAAAAGCGCCGCTAATGGTCGACCTACAGCGGCGTTTCTTAAAAAGCA
1 TTTTTGCGGCATTTTTGAAAAAGCGCCGCTAATGGTCGACCTATAGCGGCGTTT-TTAAAAAGCA
* *
23973380 CCGCTAATACTATATCTATAGCGGCGTTTTT-AAGAAAGCGCCGCTAATGC
65 CCGCTAATGCT-TATCTATAGCGGCATTTTTCAA-AAAGCGCCGCTAATGC
23973430 TAGTTCTATA
Statistics
Matches: 224, Mismatches: 32, Indels: 26
0.79 0.11 0.09
Matches are distributed among these distances:
151 4 0.02
152 29 0.13
153 69 0.31
154 20 0.09
155 77 0.34
156 24 0.11
157 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (151 bp):
TTTTTGCGGCATTTTTGAAAAAGCGCCGCTAATGGTCGACCTATAGCGGCGTTTTTAAAAAGCAC
CGCTAATGCTTATCTATAGCGGCATTTTTCAAAAAGCGCCGCTAATGCCACTAAAGCTAAAAAAA
ACCGACGGCGTGGTGCTTAGT
Found at i:23973456 original size:80 final size:80
Alignment explanation
Indices: 23973320--23973467 Score: 183
Period size: 80 Copynumber: 1.9 Consensus size: 80
23973310 TAGTTTTTTT
* * *
23973320 GCGGCGTTTTTGAAAAAGCGCCGCTAATGGTCGACCTACAGCGGCGTTTCTTAAAAAGCACCGCT
1 GCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAGACCTACAGCGGCATTTCTTAAAAAGCACCGCT
23973385 AATACTATATCTATA
66 AATACTATATCTATA
** * * **
23973400 GCGGCGTTTTT-AAGAAAGCGCCGCTAATGCTAGTTCTATAGTGGCATTT-TTCAAAAAGCGTCG
1 GCGGCGTTTTTGAA-AAAGCGCCGCTAATGCTAGACCTACAGCGGCATTTCTT-AAAAAGCACCG
23973463 CTAAT
64 CTAAT
23973468 GCTCGATCTT
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
79 4 0.07
80 53 0.93
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (80 bp):
GCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAGACCTACAGCGGCATTTCTTAAAAAGCACCGCT
AATACTATATCTATA
Found at i:23981316 original size:21 final size:22
Alignment explanation
Indices: 23981272--23981318 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
23981262 TGATCTATTT
*
23981272 ACATTAAGATTAACATAGCAAA
1 ACATTAAGATTAACATAACAAA
23981294 ACATTCAA-ATTAA-ATAACAAA
1 ACATT-AAGATTAACATAACAAA
23981315 ACAT
1 ACAT
23981319 AGCAAAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 11 0.48
22 10 0.43
23 2 0.09
ACGTcount: A:0.57, C:0.15, G:0.04, T:0.23
Consensus pattern (22 bp):
ACATTAAGATTAACATAACAAA
Found at i:23981318 original size:31 final size:32
Alignment explanation
Indices: 23981282--23981349 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 32
23981272 ACATTAAGAT
23981282 TAACATAGCAAAACATTCAAATTAAATAACAA
1 TAACATAGCAAAACATTCAAATTAAATAACAA
23981314 -AACATAGCAAAACATTCAAATTAAATAACAA
1 TAACATAGCAAAACATTCAAATTAAATAACAA
23981345 TAACA
1 TAACA
23981350 CAATAAACGT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
31 31 0.89
32 4 0.11
ACGTcount: A:0.60, C:0.16, G:0.03, T:0.21
Consensus pattern (32 bp):
TAACATAGCAAAACATTCAAATTAAATAACAA
Found at i:23981324 original size:22 final size:22
Alignment explanation
Indices: 23981280--23981324 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
23981270 TTACATTAAG
* *
23981280 ATTAACATAGCAAAACATTCAA
1 ATTAACATAACAAAACATGCAA
23981302 ATTAA-ATAACAAAACATAGCAA
1 ATTAACATAACAAAACAT-GCAA
23981324 A
1 A
23981325 ACATTCAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.60, C:0.16, G:0.04, T:0.20
Consensus pattern (22 bp):
ATTAACATAACAAAACATGCAA
Found at i:23982503 original size:47 final size:47
Alignment explanation
Indices: 23982452--23982590 Score: 208
Period size: 47 Copynumber: 3.0 Consensus size: 47
23982442 ACAGTAATGT
*
23982452 AGATAAACTGCCACTTAATAATATTGTGGACAATCCACCACTTTTGC
1 AGATAAACTACCACTTAATAATATTGTGGACAATCCACCACTTTTGC
*
23982499 AGATAAACTACCACTTAATAAAATTGTGGACAATCCACCACTTTTGC
1 AGATAAACTACCACTTAATAATATTGTGGACAATCCACCACTTTTGC
* * * *
23982546 AGATAAACTATCACTTTATAATATAT-TGGACAAGCCAACACTTTT
1 AGATAAACTACCACTTAATAATAT-TGTGGACAATCCACCACTTTT
23982591 TATATGTAAA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
47 83 0.99
48 1 0.01
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.30
Consensus pattern (47 bp):
AGATAAACTACCACTTAATAATATTGTGGACAATCCACCACTTTTGC
Found at i:23983666 original size:13 final size:15
Alignment explanation
Indices: 23983636--23983667 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
23983626 ACCCACTTAA
23983636 AAGAGAAGAAAGAAT
1 AAGAGAAGAAAGAAT
23983651 AAGAG-AGAAA-AAT
1 AAGAGAAGAAAGAAT
23983664 AAGA
1 AAGA
23983668 AAAAGAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 5 0.29
15 5 0.29
ACGTcount: A:0.69, C:0.00, G:0.25, T:0.06
Consensus pattern (15 bp):
AAGAGAAGAAAGAAT
Found at i:23985206 original size:16 final size:16
Alignment explanation
Indices: 23985175--23985211 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
23985165 ATGTGAAGAA
23985175 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
23985191 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
23985207 TATTA
1 TATTA
23985212 AAATATTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:23986303 original size:24 final size:24
Alignment explanation
Indices: 23986271--23986328 Score: 98
Period size: 24 Copynumber: 2.4 Consensus size: 24
23986261 AATCTAAACT
23986271 AATAGAGTTTGATTAAAACAAATA
1 AATAGAGTTTGATTAAAACAAATA
*
23986295 AATAGAGTTTGATTGAAACAAATA
1 AATAGAGTTTGATTAAAACAAATA
*
23986319 AACAGAGTTT
1 AATAGAGTTT
23986329 AACTGGAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.50, C:0.05, G:0.16, T:0.29
Consensus pattern (24 bp):
AATAGAGTTTGATTAAAACAAATA
Found at i:23986908 original size:20 final size:21
Alignment explanation
Indices: 23986881--23986928 Score: 89
Period size: 20 Copynumber: 2.3 Consensus size: 21
23986871 TCTAAGAGTG
23986881 TCCTAATCATCCCATTGTGCA
1 TCCTAATCATCCCATTGTGCA
23986902 T-CTAATCATCCCATTGTGCA
1 TCCTAATCATCCCATTGTGCA
23986922 TCCTAAT
1 TCCTAAT
23986929 TTTAATAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 20 0.77
21 6 0.23
ACGTcount: A:0.25, C:0.31, G:0.08, T:0.35
Consensus pattern (21 bp):
TCCTAATCATCCCATTGTGCA
Found at i:24005285 original size:18 final size:19
Alignment explanation
Indices: 24005248--24005285 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
24005238 AATCAGCTAC
**
24005248 AATACATAAAATATGCTGA
1 AATACATAAAATATAATGA
24005267 AATACA-AAAATATAATGA
1 AATACATAAAATATAATGA
24005285 A
1 A
24005286 GATAATGTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.61, C:0.08, G:0.08, T:0.24
Consensus pattern (19 bp):
AATACATAAAATATAATGA
Found at i:24018370 original size:23 final size:22
Alignment explanation
Indices: 24018324--24018371 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
24018314 GGTTTAAAAT
*
24018324 AAATATTTTTTATAAAATTATA
1 AAATATTTATTATAAAATTATA
* *
24018346 AAATATTTAATTATAAACTTCTA
1 AAATATTT-ATTATAAAATTATA
24018369 AAA
1 AAA
24018372 AGGTATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (22 bp):
AAATATTTATTATAAAATTATA
Found at i:24020841 original size:12 final size:12
Alignment explanation
Indices: 24020824--24020848 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24020814 ATCGTAAAGA
24020824 ATTGATAAATTG
1 ATTGATAAATTG
24020836 ATTGATAAATTG
1 ATTGATAAATTG
24020848 A
1 A
24020849 ATATGATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (12 bp):
ATTGATAAATTG
Found at i:24025514 original size:21 final size:21
Alignment explanation
Indices: 24025467--24025524 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
24025457 GGAAAGCAAC
*
24025467 TTCT-TTTGAATTGATTTTCT
1 TTCTGTTTGAATCGATTTTCT
24025487 TTCTGTTTGAATCGATTGTT-T
1 TTCTGTTTGAATCGATT-TTCT
* *
24025508 TTTTGTTAGAATCGATT
1 TTCTGTTTGAATCGATT
24025525 CCTTATTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.12
21 27 0.82
22 2 0.06
ACGTcount: A:0.17, C:0.09, G:0.16, T:0.59
Consensus pattern (21 bp):
TTCTGTTTGAATCGATTTTCT
Found at i:24025572 original size:102 final size:102
Alignment explanation
Indices: 24025411--24025594 Score: 280
Period size: 102 Copynumber: 1.8 Consensus size: 102
24025401 TATTTTTCTA
* * *
24025411 TTAGAATTGATTCATTATTGTTATTGATGTGTTTGTGGAAAATGTTGGAAAGCAACTTCTTTTGA
1 TTAGAATCGATTCATTATTGTTATTAATGTGTTTGTAGAAAATGTTGGAAAGCAACTTCTTTTGA
* *
24025476 ATTGATTTTCTTTCTGTTTGAATCGATTGTTTTTTTG
66 ATCGATTATCTTTCTGTTTGAATCGATTGTTTTTTTG
* **
24025513 TTAGAATCGATTCCTTATTGTTATTAATGTGTTTGTAGAAAATGTTGGGAAA-CTGCTTCTTTTG
1 TTAGAATCGATTCATTATTGTTATTAATGTGTTTGTAGAAAATGTT-GGAAAGCAACTTCTTTTG
24025577 AATCGATTATCTTTCTGT
65 AATCGATTATCTTTCTGT
24025595 AACATCCCGA
Statistics
Matches: 73, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 68 0.93
103 5 0.07
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (102 bp):
TTAGAATCGATTCATTATTGTTATTAATGTGTTTGTAGAAAATGTTGGAAAGCAACTTCTTTTGA
ATCGATTATCTTTCTGTTTGAATCGATTGTTTTTTTG
Found at i:24046883 original size:22 final size:24
Alignment explanation
Indices: 24046855--24046900 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
24046845 AAGATGCCAT
24046855 GTAGGTTG-GGAT-AAACCACCAA
1 GTAGGTTGTGGATGAAACCACCAA
24046877 GTAGGTTGTGGATGAAACCACCAA
1 GTAGGTTGTGGATGAAACCACCAA
24046901 TATTTACGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.36
23 4 0.18
24 10 0.45
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.20
Consensus pattern (24 bp):
GTAGGTTGTGGATGAAACCACCAA
Found at i:24058046 original size:46 final size:46
Alignment explanation
Indices: 24057993--24058168 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
24057983 TATTTGGGCA
24057993 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
24058039 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
24058086 TCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
24058132 -CCCAAGCCCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24058169 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 4 0.04
46 61 0.58
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:24058148 original size:93 final size:93
Alignment explanation
Indices: 24057989--24058160 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
24057979 AGGATATTTG
* * *
24057989 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACCCATTGAG
24058054 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
24058082 GGCATCCGAGCTCGTTGAGTTGAGTCCTAGTTCACTTATGGATGCGAATG-CCCAAGCCCATTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAA-CCCATTGA
24058146 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
24058161 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCCAACCCATTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:24061132 original size:15 final size:15
Alignment explanation
Indices: 24061095--24061174 Score: 76
Period size: 15 Copynumber: 5.4 Consensus size: 15
24061085 GTATCTTGGG
*
24061095 TTTCTTTATCCTGGA
1 TTTCTTTATTCTGGA
*
24061110 -TCCTTTTATTCTGGA
1 TTTC-TTTATTCTGGA
*
24061125 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
24061140 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
*
24061155 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
24061169 TTTCTT
1 TTTCTT
24061175 ATTATCTTTG
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
14 12 0.23
15 37 0.70
16 4 0.08
ACGTcount: A:0.10, C:0.17, G:0.14, T:0.59
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:24063627 original size:46 final size:45
Alignment explanation
Indices: 24063560--24063735 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
24063550 TATTTGGGCA
24063560 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
24063606 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
24063653 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
24063699 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
24063736 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:24063715 original size:93 final size:93
Alignment explanation
Indices: 24063556--24063727 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
24063546 AGGATATTTG
* *
24063556 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24063621 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
24063649 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
24063714 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
24063728 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:24066129 original size:40 final size:40
Alignment explanation
Indices: 24066047--24066266 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
24066037 ACCCAAGTAT
** * *
24066047 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
24066085 CTTCGGGTCTTAGCCCAGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
24066125 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
24066165 CTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * * * * *
24066205 CTTCGGATCTTAGTCTGGATATAGTCACTAGTATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
*
24066245 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
24066267 CATTCAAATA
Statistics
Matches: 149, Mismatches: 28, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 15 0.10
40 121 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:24068944 original size:38 final size:38
Alignment explanation
Indices: 24068901--24068976 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
24068891 TTCATCCTTT
24068901 TTCATTTCTTTTGGCCGAAAATTCTAAGAAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGAAAGGAGGAA
*
24068939 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGAAAGGAGGAA
24068977 GGAGTTCTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.22, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGAAAGGAGGAA
Found at i:24070259 original size:40 final size:39
Alignment explanation
Indices: 24070165--24070309 Score: 155
Period size: 40 Copynumber: 3.6 Consensus size: 39
24070155 TAATCGAATG
*
24070165 ATATCCGGGCTAAGTCTCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTC-CGAAGGCATTTGTGCT-AGCGACT
* * * *
24070206 ACATCCAGACTAAGATCCTAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCGAAGGCATTTGTGCTAGCGACT
* * *
24070246 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGT-CCGAAGGCATTTGTGCTAGCGACT
* *
24070286 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAG-TCCGAAGGC
24070310 CTTGTGCGAG
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.01
40 59 0.68
41 25 0.29
42 2 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (39 bp):
ATATCCGGGCTAAGTCCGAAGGCATTTGTGCTAGCGACT
Found at i:24077008 original size:38 final size:38
Alignment explanation
Indices: 24076966--24077041 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
24076956 TTCATCCTTT
24076966 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
24077004 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
1 TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
24077042 GGAGTTCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (38 bp):
TTCATTTCTTTTGGCCGAAAATTCTAAGGAAGGAGGAA
Found at i:24078328 original size:40 final size:40
Alignment explanation
Indices: 24078234--24078378 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
24078224 TACTCGAATG
* *
24078234 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTAAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCGACT
* *
24078275 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * *
24078315 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
24078355 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
24078379 CTTGTGCGAG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 62 0.68
41 27 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:24080395 original size:22 final size:22
Alignment explanation
Indices: 24080350--24080395 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
24080340 ATAATTCATA
**
24080350 ATTATAATAAAGCATTTATCAC
1 ATTATAATAAAGCATTTAAAAC
*
24080372 ATTATATTAAAGCATTTAAAAC
1 ATTATAATAAAGCATTTAAAAC
24080394 AT
1 AT
24080396 ACTACCATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (22 bp):
ATTATAATAAAGCATTTAAAAC
Found at i:24085920 original size:46 final size:46
Alignment explanation
Indices: 24085818--24085946 Score: 168
Period size: 46 Copynumber: 2.8 Consensus size: 46
24085808 TATGAGGCAT
* * * * *
24085818 CCGAACTCGTTGAGTTGCATTCCGATTTCACCTATGGATGCAAGCAT
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATGGATGCAAACAC
* *
24085865 CCAAACTCGTTGAGTTGTGTTCCGAGTTCATTATGGATGCAAACAC
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAACAC
* *
24085911 CCGAGCTCGTTGAGTTGCGTTCCAAGTTCATTATGG
1 CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGG
24085947 GTGAGATTAT
Statistics
Matches: 71, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
46 45 0.63
47 26 0.37
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGCGTTCCGAGTTCATTATGGATGCAAACAC
Found at i:24087557 original size:79 final size:79
Alignment explanation
Indices: 24087446--24087668 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 79
24087436 GCTCCTCGTT
* * *
24087446 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCG
*
24087510 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
24087526 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
24087589 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * *
24087604 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCC
24087666 GGA
63 GGA
24087669 CATCATTCAA
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 57 0.45
80 23 0.18
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:24087563 original size:39 final size:40
Alignment explanation
Indices: 24087446--24087668 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
24087436 GCTCCTCGTT
* *
24087446 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
24087486 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
24087526 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
24087565 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
24087604 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
24087645 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24087669 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:24100274 original size:18 final size:18
Alignment explanation
Indices: 24100251--24100289 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24100241 TTTCGGGTAA
*
24100251 AATCAAATT-AATTCTGTT
1 AATC-AATTGAATTCGGTT
24100269 AATCAATTGAATTCGGTT
1 AATCAATTGAATTCGGTT
24100287 AAT
1 AAT
24100290 TGGTCGGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.41
Consensus pattern (18 bp):
AATCAATTGAATTCGGTT
Found at i:24103431 original size:19 final size:20
Alignment explanation
Indices: 24103387--24103432 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
24103377 AAAATTAGAC
24103387 TTTAAAT-TATAAAAATTTT
1 TTTAAATGTATAAAAATTTT
** *
24103406 TAAAAATGTAT-ATAATTTT
1 TTTAAATGTATAAAAATTTT
24103425 TTTAAATG
1 TTTAAATG
24103433 ATTTAGGTGC
Statistics
Matches: 21, Mismatches: 5, Indels: 2
0.75 0.18 0.07
Matches are distributed among these distances:
19 18 0.86
20 3 0.14
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (20 bp):
TTTAAATGTATAAAAATTTT
Found at i:24103964 original size:17 final size:17
Alignment explanation
Indices: 24103918--24103966 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 17
24103908 AATTTTGGTT
24103918 TTTTAAAAAATA-TAT-
1 TTTTAAAAAATATTATA
* * *
24103933 TTTT-TAATATTTTATA
1 TTTTAAAAAATATTATA
24103949 TTTTAAAAAATATTATA
1 TTTTAAAAAATATTATA
24103966 T
1 T
24103967 GTTTGTAAAT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 7 0.28
16 4 0.16
17 10 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTTAAAAAATATTATA
Found at i:24104160 original size:18 final size:18
Alignment explanation
Indices: 24104139--24104173 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24104129 TTTATAATTT
24104139 ATAAAAATTCTAATTTAG
1 ATAAAAATTCTAATTTAG
**
24104157 ATAAATTTTCTAATTTA
1 ATAAAAATTCTAATTTA
24104174 AATTGTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (18 bp):
ATAAAAATTCTAATTTAG
Found at i:24105893 original size:15 final size:16
Alignment explanation
Indices: 24105875--24105910 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
24105865 CTCTCTCTGG
24105875 TTTTCTTTTTCTTTT-T
1 TTTTC-TTTTCTTTTGT
24105891 TTTTCTTTTCTTTTGT
1 TTTTCTTTTCTTTTGT
24105907 TTTT
1 TTTT
24105911 GGAAAACGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.00, C:0.11, G:0.03, T:0.86
Consensus pattern (16 bp):
TTTTCTTTTCTTTTGT
Found at i:24108214 original size:39 final size:39
Alignment explanation
Indices: 24108170--24108406 Score: 384
Period size: 39 Copynumber: 6.1 Consensus size: 39
24108160 ATGCAAGACA
*
24108170 CTGGAAATGTATCCGGGCTAAAGTCCAGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
24108209 CTGGAAATGTATCCGGGCTAAAGTCCCGTAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* * *
24108248 CTAGAAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
*
24108287 CTGGAAATGTATCCGGGCTAAAGTTCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
24108326 CTAGAAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
24108365 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
24108404 CTG
1 CTG
24108407 ATAATATAAT
Statistics
Matches: 181, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 181 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:24111765 original size:42 final size:42
Alignment explanation
Indices: 24111709--24111826 Score: 130
Period size: 44 Copynumber: 2.8 Consensus size: 42
24111699 CTTGCCACTA
* * *
24111709 TCCCAGACAGGGTCTTACATGAAATCATATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGAAATCATATACGATGCCAACG
*
24111751 TCCCAGACATGGTCTTACACGTAAATC-TCAAATCGATGCCAACG
1 TCCCAGACATGGTCTTACACG-AAATCAT-ATA-CGATGCCAACG
* * * *
24111795 TCCTAGACGTGGTCCTACACGAAATCACATAC
1 TCCCAGACATGGTCTTACACGAAATCATATAC
24111827 TGGGATCCTA
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
42 21 0.33
43 14 0.22
44 28 0.44
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAATCATATACGATGCCAACG
Found at i:24111967 original size:79 final size:80
Alignment explanation
Indices: 24111835--24111994 Score: 277
Period size: 79 Copynumber: 2.0 Consensus size: 80
24111825 ACTGGGATCC
* **
24111835 TATGTCATATGTATCCTAACTATTTCCTATGGTACTTACGGGGCTTTCGGACGCCATAATTTGAT
1 TATGTCATATGTATCCTAACTATTTCCTATGGTACGTACGGGGCTTTCGGACGCCATAATTCAAT
24111900 CGATGTTTTCTCAAT
66 CGATGTTTTCTCAAT
*
24111915 TATGTCATATGTATCCTAACTA-TTCCTATGGTTCGTACGGGGCTTTCGGACGCCATAATTCAAT
1 TATGTCATATGTATCCTAACTATTTCCTATGGTACGTACGGGGCTTTCGGACGCCATAATTCAAT
24111979 CGATGTTTTCTCAAT
66 CGATGTTTTCTCAAT
24111994 T
1 T
24111995 TCACATATTC
Statistics
Matches: 76, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
79 54 0.71
80 22 0.29
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (80 bp):
TATGTCATATGTATCCTAACTATTTCCTATGGTACGTACGGGGCTTTCGGACGCCATAATTCAAT
CGATGTTTTCTCAAT
Found at i:24116877 original size:40 final size:40
Alignment explanation
Indices: 24116828--24117002 Score: 296
Period size: 40 Copynumber: 4.4 Consensus size: 40
24116818 CGGATGTAAC
*
24116828 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
24116868 AACCCGCACGAATACCTTCGGGACTTAACCCAGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
24116908 AACCCGCACGAATACCTTCGGAACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
24116948 AACCCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
24116988 AACCCGCACGAATGC
1 AACCCGCACGAATGC
24117003 TATGCACATA
Statistics
Matches: 126, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.31, C:0.30, G:0.17, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:24119599 original size:40 final size:40
Alignment explanation
Indices: 24119542--24119731 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
24119532 ATTTGAATAC
* * * *
24119542 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGA-TAT
*
24119582 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
*
24119622 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * * *
24119662 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * *
24119702 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
24119732 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
Found at i:24119675 original size:80 final size:80
Alignment explanation
Indices: 24119542--24119751 Score: 280
Period size: 80 Copynumber: 2.6 Consensus size: 80
24119532 ATTTGAATAC
* * * *
24119542 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
*
24119607 TGTGCAAGTTGATAT
66 CGTGCAAGTTGATAT
24119622 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGA-TATATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCAT
* *
24119686 TCGTGCGAGTTGCTAT
65 TCGTGCAAGTTGATAT
* * * ** *
24119702 ACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
24119752 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 8 0.07
80 104 0.90
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGATAT
Found at i:24124709 original size:39 final size:39
Alignment explanation
Indices: 24124595--24124820 Score: 202
Period size: 39 Copynumber: 5.7 Consensus size: 39
24124585 ATATTTGATG
* ** *
24124595 TGTATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAAT
1 TGTATCCGGACTT-AAGGTCCGCAGGCT-TCGTGCTGGAAT
* * * *
24124635 TATATCCGGGCTTAAAGACCTGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTTAAGGTCC-GCAGGCTTCGTGCTGGAAT
* *
24124675 TGTATCCAGACCTAAGGTCCGCAGGCTTCGTGCTGGAAT
1 TGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * *
24124714 TGTATCCGGACTTGAGATCCGCAGGCTTCGTGCTGGTAC
1 TGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * * *
24124753 TATATCCGGACTTAAGGTCCACAGGCTTCGTACTGGTAC
1 TGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
* * * *
24124792 TATATCCGGGCTTAAAGTCCCGTAGGCTT
1 TGTATCCGGACTTAAGGT-CCGCAGGCTT
24124821 TGTTTTGGTG
Statistics
Matches: 157, Mismatches: 26, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
39 107 0.68
40 50 0.32
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
TGTATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAAT
Found at i:24124769 original size:78 final size:79
Alignment explanation
Indices: 24124626--24124808 Score: 226
Period size: 78 Copynumber: 2.3 Consensus size: 79
24124616 GCAGGCTATA
* * *
24124626 TGCTGGAATTATATCCGGGCTTAAAGACCTGCAGGCTTCGTGCTGGAATTGTATCCAGACCTAAG
1 TGCTGGAATTATATCCGGACTTAAAGACCTGCAGGCTTCGTGCTGGAACTATATCCAGACCTAAG
*
24124691 GTCCGCAGGCTTCG
66 GTCCACAGGCTTCG
* * * * *
24124705 TGCTGGAATTGTATCCGGACTT-GAGATCC-GCAGGCTTCGTGCTGGTACTATATCCGGACTTAA
1 TGCTGGAATTATATCCGGACTTAAAGA-CCTGCAGGCTTCGTGCTGGAACTATATCCAGACCTAA
24124768 GGTCCACAGGCTTCG
65 GGTCCACAGGCTTCG
* * * *
24124783 TACTGGTACTATATCCGGGCTTAAAG
1 TGCTGGAATTATATCCGGACTTAAAG
24124809 TCCCGTAGGC
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
78 63 0.72
79 24 0.28
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.28
Consensus pattern (79 bp):
TGCTGGAATTATATCCGGACTTAAAGACCTGCAGGCTTCGTGCTGGAACTATATCCAGACCTAAG
GTCCACAGGCTTCG
Found at i:24130978 original size:43 final size:42
Alignment explanation
Indices: 24130912--24131076 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 42
24130902 AACTCGTACA
* * * **
24130912 ATGCCAACGTCCTAGAC-GTGGTCTTACATGTTATCAAATACCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACAAGAAATCAAATA-CG
* **
24130955 ATGCCACTGTCCCAGACAGGGTCTTACAAGAAATCATGTACG
1 ATGCCAATGTCCCAGACAGGGTCTTACAAGAAATCAAATACG
* *
24130997 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACAAG-AAA--TCAAATACG
** *** *
24131041 ATGCCAACATCCCAGATTTGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACAGGGTCTTACAAGAAATCA
24131077 CGTACCGGAA
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 3 0.03
42 29 0.29
43 36 0.36
44 29 0.29
45 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACAAGAAATCAAATACG
Found at i:24135449 original size:37 final size:37
Alignment explanation
Indices: 24135399--24135477 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24135389 TTATTACGAA
* * *
24135399 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24135436 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24135473 GTCTT
1 GTCTT
24135478 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24135690 original size:47 final size:47
Alignment explanation
Indices: 24135595--24136031 Score: 522
Period size: 47 Copynumber: 9.1 Consensus size: 47
24135585 CCTTTCGGGA
** * * * * * * *
24135595 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
* ** * * *
24135642 CTTGTCACGTATATACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
24135689 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
*
24135736 CTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGC---TA-----T-T-AGGC
*
24135793 CTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
24135840 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
24135887 CTTATCACACATATACACTTTCACATTCATCAC-TCGG-TA-TA-GC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
*
24135930 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
* * * *
24135977 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACACAT--ATACACTTTCACATTCATCACGTCGGCTATTAGGC
24136028 CTTA
1 CTTA
24136032 CTATCATTTC
Statistics
Matches: 350, Mismatches: 22, Indels: 32
0.87 0.05 0.08
Matches are distributed among these distances:
43 35 0.10
44 6 0.02
45 4 0.01
46 6 0.02
47 204 0.58
48 2 0.01
49 6 0.02
50 2 0.01
51 38 0.11
54 2 0.01
55 1 0.00
56 1 0.00
57 43 0.12
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
Found at i:24135801 original size:57 final size:57
Alignment explanation
Indices: 24135732--24135893 Score: 245
Period size: 57 Copynumber: 3.0 Consensus size: 57
24135722 GTCGGCTATT
24135732 AGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATC
1 AGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATC
24135789 AGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGC---TA-----T-T-
1 AGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATC
*
24135836 AGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATC
1 AGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATC
24135893 A
1 A
24135894 CACATATACA
Statistics
Matches: 94, Mismatches: 1, Indels: 20
0.82 0.01 0.17
Matches are distributed among these distances:
47 42 0.45
48 1 0.01
49 1 0.01
50 2 0.02
54 2 0.02
55 1 0.01
56 1 0.01
57 44 0.47
ACGTcount: A:0.27, C:0.28, G:0.12, T:0.33
Consensus pattern (57 bp):
AGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATC
Found at i:24135865 original size:104 final size:103
Alignment explanation
Indices: 24135684--24136031 Score: 482
Period size: 104 Copynumber: 3.5 Consensus size: 103
24135674 CATCTGCCAT
24135684 TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
1 TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
*
24135749 TACACTTTCACATTCATTACGTCGGCTATTAGGCCTTA
66 TACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
*
24135787 TCAGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCACACAT
1 T-AGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACAT
24135852 ATACACTTTCACATTCATCACGTCGGC---TA-----T-
65 ATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
24135882 TAGGCCTTATCACACATATACACTTTCACATTCATCAC-TCGG-TA-TA-GCCTTATCACACATA
1 TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
*
24135943 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 TACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
* * * *
24135981 TTA---CATAT-ATAC--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 -TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
24136032 CTATCATTTC
Statistics
Matches: 223, Mismatches: 7, Indels: 35
0.84 0.03 0.13
Matches are distributed among these distances:
90 40 0.18
91 2 0.01
92 2 0.01
93 6 0.03
94 57 0.26
95 5 0.02
96 5 0.02
97 6 0.03
98 7 0.03
100 2 0.01
101 2 0.01
103 1 0.00
104 88 0.39
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (103 bp):
TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
TACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
Found at i:24135913 original size:151 final size:137
Alignment explanation
Indices: 24135652--24136031 Score: 517
Period size: 151 Copynumber: 2.6 Consensus size: 137
24135642 CTTGTCACGT
* *
24135652 ATATACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCACACATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
*
24135717 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGG
66 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCAC-T---C-----GG
24135782 CCTTATCAGGCCTTATCACAC
122 ---TAT-A-GCCTTATCACAC
* *
24135803 ATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
24135868 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACTCGGTATAGCCTT
66 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACTCGGTATAGCCTT
24135933 ATCACAC
131 ATCACAC
* *
24135940 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA-T-CACACAT--ATACACTTTCAC
* *
24136005 ATTCATCACATCGGCCATTAGGCCTTA
62 ATTCATCACGTCGGCTATTAGGCCTTA
24136032 CTATCATTTC
Statistics
Matches: 214, Mismatches: 11, Indels: 18
0.88 0.05 0.07
Matches are distributed among these distances:
137 51 0.24
138 2 0.01
139 8 0.04
141 37 0.17
142 2 0.01
147 1 0.00
150 1 0.00
151 112 0.52
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (137 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACTCGGTATAGCCTT
ATCACAC
Found at i:24150154 original size:40 final size:40
Alignment explanation
Indices: 24150097--24150286 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
24150087 ATTTGAATAC
* * * *
24150097 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGA-TAT
*
24150137 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
*
24150177 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * * *
24150217 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * *
24150257 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
24150287 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
Found at i:24150230 original size:80 final size:80
Alignment explanation
Indices: 24150097--24150306 Score: 280
Period size: 80 Copynumber: 2.6 Consensus size: 80
24150087 ATTTGAATAC
* * * *
24150097 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
*
24150162 TGTGCAAGTTGATAT
66 CGTGCAAGTTGATAT
24150177 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGA-TATATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCAT
* *
24150241 TCGTGCGAGTTGCTAT
65 TCGTGCAAGTTGATAT
* * * ** *
24150257 ACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
24150307 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 8 0.07
80 104 0.90
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGATAT
Found at i:24161213 original size:43 final size:42
Alignment explanation
Indices: 24161147--24161311 Score: 127
Period size: 43 Copynumber: 3.9 Consensus size: 42
24161137 AACTCGTACA
* * * **
24161147 ATGCCAACGTCCTAGAC-GTGGTCTTACATGTTATCAAATACCG
1 ATGCCAATGTCCCAGACAG-GGTCTTACAAGAAATCAAATA-CG
* **
24161190 ATGCCACTGTCCCAGACAGGGTCTTACAAGAAATCATGTACG
1 ATGCCAATGTCCCAGACAGGGTCTTACAAGAAATCAAATACG
* *
24161232 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CG
1 ATGCCAATGTCCCAGACAGGGTCTTACAAG-AAA--TCAAATACG
** *** *
24161276 ATGCCAACATCCCAGATTTGGTCTTACACGAAATCA
1 ATGCCAATGTCCCAGACAGGGTCTTACAAGAAATCA
24161312 CGTACCGGAA
Statistics
Matches: 101, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 3 0.03
42 29 0.29
43 36 0.36
44 29 0.29
45 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACAGGGTCTTACAAGAAATCAAATACG
Found at i:24165660 original size:37 final size:37
Alignment explanation
Indices: 24165610--24165688 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24165600 TTATTACGAA
* * *
24165610 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24165647 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24165684 GTCTT
1 GTCTT
24165689 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24166012 original size:57 final size:47
Alignment explanation
Indices: 24165806--24166246 Score: 549
Period size: 47 Copynumber: 9.1 Consensus size: 47
24165796 CCTTTCGGGA
** * * * * * * *
24165806 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
* ** * * *
24165853 CTTGTCACGTATATACACTTTCACATTCATCACATCTGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
24165900 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
*
24165947 CTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGC---TA-----T-T-AGGC
*
24166004 CTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
24166051 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
*
24166098 CTTATCACACATATACACTTTCACATTCATCACCTCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
*
24166145 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
* * * *
24166192 CTTATTACATATATACATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-T-CACACAT--ATACACTTTCACATTCATCACGTCGGCTATTAGGC
24166243 CTTA
1 CTTA
24166247 CTATCATTTC
Statistics
Matches: 356, Mismatches: 24, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
47 261 0.73
48 2 0.01
49 6 0.02
50 2 0.01
51 38 0.11
54 2 0.01
55 1 0.00
56 1 0.00
57 43 0.12
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGC
Found at i:24166076 original size:104 final size:103
Alignment explanation
Indices: 24165895--24166246 Score: 509
Period size: 104 Copynumber: 3.5 Consensus size: 103
24165885 CATCTGCCAT
24165895 TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
1 TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
*
24165960 TACACTTTCACATTCATTACGTCGGCTATTAGGCCTTA
66 TACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
*
24165998 TCAGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCACACAT
1 T-AGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACAT
24166063 ATACACTTTCACATTCATCACGTCGGC---TA-----T-
65 ATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
*
24166093 TAGGCCTTATCACACATATACACTTTCACATTCATCACCTCGGCTATTAGGCCTTATCACACATA
1 TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
*
24166158 TACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
66 TACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
* * * *
24166196 TTA---CATAT-ATAC--ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 -TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
24166247 CTATCATTTC
Statistics
Matches: 229, Mismatches: 9, Indels: 27
0.86 0.03 0.10
Matches are distributed among these distances:
94 87 0.38
95 1 0.00
96 1 0.00
97 2 0.01
98 37 0.16
100 3 0.01
101 6 0.03
102 1 0.00
103 1 0.00
104 90 0.39
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (103 bp):
TAGGCCTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATA
TACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA
Found at i:24166124 original size:151 final size:141
Alignment explanation
Indices: 24165863--24166246 Score: 552
Period size: 151 Copynumber: 2.6 Consensus size: 141
24165853 CTTGTCACGT
* *
24165863 ATATACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCACACATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
* *
24165928 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGG
66 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACCTCGGC---TA--
24165993 CCTTATCAGGCCTTATCACAC
126 ---T-T-AGGCCTTATCACAC
* *
24166014 ATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
24166079 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACCTCGGCTATTAGG
66 ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACCTCGGCTATTAGG
24166144 CCTTATCACAC
131 CCTTATCACAC
* *
24166155 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATACACTTTCAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA-T-CACACAT--ATACACTTTCAC
* *
24166220 ATTCATCACATCGGCCATTAGGCCTTA
62 ATTCATCACGTCGGCTATTAGGCCTTA
24166247 CTATCATTTC
Statistics
Matches: 217, Mismatches: 12, Indels: 14
0.89 0.05 0.06
Matches are distributed among these distances:
141 53 0.24
142 2 0.01
143 6 0.03
145 37 0.17
148 2 0.01
151 117 0.54
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (141 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTC
ATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACCTCGGCTATTAGG
CCTTATCACAC
Found at i:24166144 original size:198 final size:194
Alignment explanation
Indices: 24165805--24166246 Score: 636
Period size: 198 Copynumber: 2.3 Consensus size: 194
24165795 GCCTTTCGGG
* * * * * * * **
24165805 ACTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGCCTTGTCACGTATATACA
1 ACTTATCACA-CTATACACTTTCACATTCATTACGTCGGCCATTAGGCCTTATCACACATATACA
* *
24165870 CTTTCACATTCATCACATCTGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACGT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACCT
* *
24165935 CGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATC
130 CGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
*
24166000 AGGCCTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCACACATAT
1 A---CTTATCACAC-TATACACTTTCACATTCATTACGTCGGCCATTAGGCCTTATCACACATAT
* *
24166065 ACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCA
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCA
24166130 CCTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
127 CCTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
*
24166195 ATT
192 ATC
* * * *
24166198 ACATAT-ATAC-ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ACTTATCACACTATACACTTTCACATTCATTACGTCGGCCATTAGGCCTTA
24166247 CTATCATTTC
Statistics
Matches: 221, Mismatches: 22, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
192 36 0.16
194 3 0.01
195 5 0.02
198 177 0.80
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (194 bp):
ACTTATCACACTATACACTTTCACATTCATTACGTCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACCTC
GGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATC
Found at i:24169927 original size:40 final size:40
Alignment explanation
Indices: 24169883--24169981 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
24169873 CATGATTGCT
* * *
24169883 CTTCGGGACTTAGCCCGGATTTAGTAAC-TCGCACCAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTAGCA-CAAAGC
* * *
24169923 CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCACAAAGC
24169963 CTTCGGGACTTAGCCCGGA
1 CTTCGGGACTTAGCCCGGA
24169982 CATCATTCAA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
39 3 0.06
40 39 0.80
41 7 0.14
ACGTcount: A:0.22, C:0.28, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTAGCACAAAGC
Found at i:24170330 original size:29 final size:29
Alignment explanation
Indices: 24170291--24170369 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
24170281 CTTAATAATC
*
24170291 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
24170321 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
24170350 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
24170370 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:24170412 original size:43 final size:43
Alignment explanation
Indices: 24170351--24170496 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
24170341 TGCATTTCAA
*
24170351 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAATACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
24170394 GCCCGCACACTTAGTGCCAATCTCGCAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24170437 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24170480 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
24170497 TGAAAACCAA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.26, C:0.35, G:0.16, T:0.23
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:24172395 original size:37 final size:37
Alignment explanation
Indices: 24172345--24172423 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24172335 TTATTACGAA
* * *
24172345 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24172382 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24172419 GTCTT
1 GTCTT
24172424 TAGAGCTCGA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24172636 original size:47 final size:47
Alignment explanation
Indices: 24172598--24173065 Score: 774
Period size: 47 Copynumber: 9.9 Consensus size: 47
24172588 CTTGTCACGT
* * *
24172598 ATATACACTTTCACATTCATCACATCTGCCATTAGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
24172645 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
* *
24172692 ATATAAACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
24172739 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
*
24172786 ATATACACTTTCACATTCATCACCTCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
* *
24172833 ATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
*
24172880 ATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
*
24172927 ATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
* * *
24172974 ATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATTACATAT
1 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA-T-CACAC
*
24173023 ATACATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 AT--ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTA
24173066 CTATCATTTC
Statistics
Matches: 400, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 357 0.89
48 1 0.00
49 5 0.01
51 37 0.09
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAC
Found at i:24172795 original size:141 final size:141
Alignment explanation
Indices: 24172541--24173065 Score: 789
Period size: 141 Copynumber: 3.7 Consensus size: 141
24172531 CCTTTCGGGA
** * * * * * * * * **
24172541 CTTATCACATTTATGCACTTTCACATCCATTACGTTGGCCACTCGGCCTTGTCACGTATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
* *
24172606 TTTCACATTCATCACATCTGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
24172671 GGCTATTAGGC
131 GGCTATTAGGC
*
24172682 CTTATCACACATATAAACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
* *
24172747 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACCTC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
24172812 GGCTATTAGGC
131 GGCTATTAGGC
*
24172823 CTTATCACACATATACACTTTCACATTCATTACGTCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
* * *
24172888 TTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACACTTTCACATTCATCACGTC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
24172953 GGCTATTAGGC
131 GGCTATTAGGC
* * * *
24172964 CTTATCACACATATACACTTTCACATTCATCACATCAGCTATTAGGCCTTATTACATATATACAT
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTA-T-CACACAT--AT
24173029 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24173066 CTATCATTTC
Statistics
Matches: 352, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
141 309 0.88
142 1 0.00
143 5 0.01
145 37 0.11
ACGTcount: A:0.28, C:0.29, G:0.10, T:0.33
Consensus pattern (141 bp):
CTTATCACACATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCACACATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
GGCTATTAGGC
Found at i:24176228 original size:18 final size:18
Alignment explanation
Indices: 24176205--24176243 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
24176195 ATATCACAAA
24176205 ATGACCAAGTTCCTATAC
1 ATGACCAAGTTCCTATAC
24176223 ATGACCAAGTTCCTATAC
1 ATGACCAAGTTCCTATAC
24176241 ATG
1 ATG
24176244 CCATACTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (18 bp):
ATGACCAAGTTCCTATAC
Found at i:24176784 original size:51 final size:51
Alignment explanation
Indices: 24176729--24176828 Score: 132
Period size: 51 Copynumber: 2.0 Consensus size: 51
24176719 GCTACCAATA
*
24176729 ACATGTAA-CACATCCATAATGAAA-TCAGACCTCTAAATGAGCTCGGATGTT
1 ACATG-AATCACATCCATAAT-AAACTCAGACCACTAAATGAGCTCGGATGTT
* * *
24176780 ACATGAATCACATCCATCATAAACTTAGACCACTCAATGAGCTCGGATG
1 ACATGAATCACATCCATAATAAACTCAGACCACTAAATGAGCTCGGATG
24176829 CTCGCATCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 5 0.12
51 38 0.88
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (51 bp):
ACATGAATCACATCCATAATAAACTCAGACCACTAAATGAGCTCGGATGTT
Found at i:24176859 original size:43 final size:43
Alignment explanation
Indices: 24176790--24176873 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
24176780 ACATGAATCA
* *
24176790 CATCCATCATAAACTTAGACCACTCAATGAGCTCGGATGCTCG
1 CATCCATAATAAACTTAGACCACTCAACGAGCTCGGATGCTCG
* * *
24176833 CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGCT
1 CATCCATAATAAACTTAGACCACTCAACGAGCTCGGATGCT
24176874 ATATACCTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (43 bp):
CATCCATAATAAACTTAGACCACTCAACGAGCTCGGATGCTCG
Found at i:24187765 original size:13 final size:13
Alignment explanation
Indices: 24187747--24187771 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24187737 TGCAAGTTCA
24187747 CACGACCGTGTCG
1 CACGACCGTGTCG
24187760 CACGACCGTGTC
1 CACGACCGTGTC
24187772 TAGCTTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.28, T:0.16
Consensus pattern (13 bp):
CACGACCGTGTCG
Found at i:24193223 original size:14 final size:14
Alignment explanation
Indices: 24193204--24193237 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
24193194 CTGTGTTTAT
24193204 GGATCTAATGAATA
1 GGATCTAATGAATA
24193218 GGATCTAATGAATA
1 GGATCTAATGAATA
24193232 GGATCT
1 GGATCT
24193238 TTTAGCCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.38, C:0.09, G:0.24, T:0.29
Consensus pattern (14 bp):
GGATCTAATGAATA
Found at i:24208855 original size:54 final size:54
Alignment explanation
Indices: 24208799--24209128 Score: 419
Period size: 54 Copynumber: 6.1 Consensus size: 54
24208789 GGGCAAAATG
* * * * * * *
24208799 GTAATTTTACCCCATAAGGGTATCTCGGTAATTCTATCTTATAGGGGTATTTTG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTA
* * *
24208853 GTATTTCTATCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGATATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTA
* * * *
24208907 GTAATTCTACCTTACAGGGGTATTTCGGTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTA
* * *
24208961 GTAATTCTACCCTA-TAGAGGTATTTCGATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCGGTAATTCTACCTTACAGGGGTATTTTA
* * *
24209015 GTAATTCTACCCTGCAGGGGTATTTCGATAATTCTACCTTACAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTA
* ** * *
24209069 GTAATTCTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTA
24209123 GTAATT
1 GTAATT
24209129 TTACAAACTA
Statistics
Matches: 242, Mismatches: 32, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
53 1 0.00
54 240 0.99
55 1 0.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.39
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTA
Found at i:24209121 original size:27 final size:27
Alignment explanation
Indices: 24208826--24209182 Score: 362
Period size: 27 Copynumber: 13.2 Consensus size: 27
24208816 GGGTATCTCG
* * * *
24208826 GTAATTCTATCTTATAGGGGTATTTTG
1 GTAATTCTACCCTACAGGGGTATTTTA
* * * **
24208853 GTATTTCTATCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
24208880 GTAATTCTACCTTACAGGGATATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* **
24208907 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
24208934 GTAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTTA
* * *
24208961 GTAATTCTACCCTATAGAGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTTA
* *
24208987 GATAATTCTACCTTACAGGGGTATTTCA
1 G-TAATTCTACCCTACAGGGGTATTTTA
* *
24209015 GTAATTCTACCCTGCAGGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTTA
*
24209041 GATAATTCTACCTTACAGGGGTATTTTA
1 G-TAATTCTACCCTACAGGGGTATTTTA
24209069 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
*
24209096 GTAATTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTTA
* **
24209123 GTAATTTTA-CAAACTAGGGGTATTTTA
1 GTAATTCTACCCTAC-AGGGGTATTTTA
* **
24209150 GTAATTTTA-CAAACCAGGGGTATTTTA
1 GTAATTCTACCCTA-CAGGGGTATTTTA
24209177 GTAATT
1 GTAATT
24209183 TTACTGATTG
Statistics
Matches: 285, Mismatches: 39, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
26 8 0.03
27 269 0.94
28 8 0.03
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTTA
Found at i:24209197 original size:27 final size:28
Alignment explanation
Indices: 24209057--24209211 Score: 126
Period size: 27 Copynumber: 5.7 Consensus size: 28
24209047 TCTACCTTAC
* ** **
24209057 AGGGGTATTTTAGTAATTCTAC-CCTAC
1 AGGGGTATTTTAGTAATTTTACTAATTG
*
24209084 AGGGGTATTTTAGTAATTCTACCCT-A-T-
1 AGGGGTATTTTAGTAATTTTA--CTAATTG
* *
24209111 AGGGGTATTTTAGTAATTTTACAAACT-
1 AGGGGTATTTTAGTAATTTTACTAATTG
***
24209138 AGGGGTATTTTAGTAATTTTAC-AAACC
1 AGGGGTATTTTAGTAATTTTACTAATTG
*
24209165 AGGGGTATTTTAGTAATTTTACTGATTG
1 AGGGGTATTTTAGTAATTTTACTAATTG
*
24209193 A-GGGTATTTTGGTAATTTT
1 AGGGGTATTTTAGTAATTTT
24209212 GTAAATCGAG
Statistics
Matches: 110, Mismatches: 11, Indels: 14
0.81 0.08 0.10
Matches are distributed among these distances:
25 1 0.01
26 3 0.03
27 103 0.94
28 2 0.02
29 1 0.01
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.42
Consensus pattern (28 bp):
AGGGGTATTTTAGTAATTTTACTAATTG
Found at i:24211095 original size:21 final size:21
Alignment explanation
Indices: 24211069--24211129 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
24211059 CACAGCCTGT
24211069 TCACACGGCCGTGT-CC-CAGG
1 TCACACGGCCGTGTGCCTCA-G
* *
24211089 CTCACACGGGCATGTGCCTCAG
1 -TCACACGGCCGTGTGCCTCAG
*
24211111 TCACACGGCCGTGTACCTC
1 TCACACGGCCGTGTGCCTC
24211130 CCTCCACATG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 28 0.85
22 3 0.09
23 2 0.06
ACGTcount: A:0.16, C:0.39, G:0.26, T:0.18
Consensus pattern (21 bp):
TCACACGGCCGTGTGCCTCAG
Found at i:24214176 original size:39 final size:40
Alignment explanation
Indices: 24214133--24214354 Score: 175
Period size: 39 Copynumber: 5.6 Consensus size: 40
24214123 TCCTCGTTCA
* * * *
24214133 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTTACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * *
24214172 AATGCCTTCGGGACTTAACCCGGATTTAATTACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * *
24214212 AATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
* * * * *
24214251 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCACACG
** * * * *
24214291 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACG
* *
24214331 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
24214355 CAGCATTCAA
Statistics
Matches: 151, Mismatches: 25, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
39 71 0.47
40 70 0.46
41 10 0.07
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACACG
Found at i:24214262 original size:79 final size:76
Alignment explanation
Indices: 24214131--24214354 Score: 227
Period size: 79 Copynumber: 2.8 Consensus size: 76
24214121 GCTCCTCGTT
* * *
24214131 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTTA-CACAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGT-AC-TAGCACAAAGCCTTCGGGACTTAACCCGG
*
24214195 ATTT-AATTACTCGCA
63 ATTTGTA-T-CTCGCA
* * * *
24214210 CGAATGCCTTCGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTA-CTAGCACAAA-GCCTTCGGGACTTAACCCGG-
24214275 ATTTGTATCTCGCA
63 ATTTGTATCTCGCA
* * * *
24214289 CAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGT-AC-TAGCACAAAGCCTTCGGGACTTAACCCGG
24214354 A
63 A
24214355 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 16, Indels: 16
0.79 0.10 0.10
Matches are distributed among these distances:
77 2 0.02
78 23 0.19
79 49 0.40
80 37 0.31
81 10 0.08
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (76 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTACTAGCACAAAGCCTTCGGGACTTAACCCGGATT
TGTATCTCGCA
Found at i:24214283 original size:40 final size:39
Alignment explanation
Indices: 24214131--24214301 Score: 186
Period size: 39 Copynumber: 4.3 Consensus size: 39
24214121 GCTCCTCGTT
* * * * **
24214131 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTTACA
1 CAAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCA
*
24214171 C-AATGCCTTCGGGACTTAACCCGGATTT-AATTACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTGTA-T-CTCGCA
*
24214210 CGAATGCCTTC-GGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTT-GTATCTCGCA
* *
24214249 CAAAGGCCTTCGGGGCTTAACCCGGAATTTGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTGTATCTCGCA
24214289 CAAATGCCTTCGG
1 CAAATGCCTTCGG
24214302 ATCTTAGTCC
Statistics
Matches: 112, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
37 1 0.01
39 61 0.54
40 45 0.40
41 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTGTATCTCGCA
Found at i:24214363 original size:41 final size:41
Alignment explanation
Indices: 24214286--24214363 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24214276 TTTGTATCTC
* * *
24214286 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24214327 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24214364 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24216734 original size:40 final size:40
Alignment explanation
Indices: 24216690--24216849 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
24216680 CTCGATATAT
*
24216690 TGTATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* *
24216730 TGTATATCCAGGTTAAATCCTGCAGGCTTCGTGCTGGTAA
1 TGTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * *
24216770 AGTATATCCGGGTTAAATCCCGCAGGCTTAGTGTTGGT-A
1 TGTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
* * * *
24216809 -CTATATCCGGGCCTAAAGTCCCGCAGGCTTTGTGCTAGTAA
1 TGTATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAA
24216850 CTGGATTCAG
Statistics
Matches: 104, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
38 10 0.10
39 5 0.05
40 88 0.85
41 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.31
Consensus pattern (40 bp):
TGTATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
Found at i:24220286 original size:24 final size:26
Alignment explanation
Indices: 24220224--24220291 Score: 95
Period size: 24 Copynumber: 2.7 Consensus size: 26
24220214 GACTCACCGT
24220224 AGCTCATATGAGCTTACTGATATATC
1 AGCTCATATGAGCTTACTGATATATC
* * *
24220250 AGCTCGTACGAGCTTACTG-T-TCTC
1 AGCTCATATGAGCTTACTGATATATC
24220274 AGCTCATATGAGCTTACT
1 AGCTCATATGAGCTTACT
24220292 ATTTAGCACG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 19 0.51
25 1 0.03
26 17 0.46
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.34
Consensus pattern (26 bp):
AGCTCATATGAGCTTACTGATATATC
Found at i:24227404 original size:14 final size:13
Alignment explanation
Indices: 24227381--24227411 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
24227371 TCAACACCCA
24227381 TTGGGTATGATCC
1 TTGGGTATGATCC
24227394 TTGGAGTATGATCC
1 TTGG-GTATGATCC
24227408 TTGG
1 TTGG
24227412 TGTACTTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.16, C:0.13, G:0.32, T:0.39
Consensus pattern (13 bp):
TTGGGTATGATCC
Found at i:24228530 original size:19 final size:19
Alignment explanation
Indices: 24228506--24228543 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
24228496 CGAAAGTTTT
24228506 ACTTAGAATCCAAAACCAA
1 ACTTAGAATCCAAAACCAA
24228525 ACTTAGAATCCAAAACCAA
1 ACTTAGAATCCAAAACCAA
24228544 CTTTGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.53, C:0.26, G:0.05, T:0.16
Consensus pattern (19 bp):
ACTTAGAATCCAAAACCAA
Found at i:24230918 original size:48 final size:48
Alignment explanation
Indices: 24230774--24230901 Score: 186
Period size: 48 Copynumber: 2.7 Consensus size: 48
24230764 CGATTAATGA
24230774 GAGCCAGTGTAAGACCATATCTAGGACATGGCATCAGCATTGATATGAT
1 GAGCCAGTGTAAGACCATATCTAGGACATGGCATCAGCATTGATATG-T
* * *
24230823 -AGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCATTGATATGT
1 GAGCCAGTGTAAGACCATATCTAGGACATGGCATCAGCATTGATATGT
* * *
24230870 GTGCCAGTATAAGACCATATCTAGGATATGGC
1 GAGCCAGTGTAAGACCATATCTAGGACATGGC
24230902 GTCGGCCTCG
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
47 1 0.01
48 68 0.99
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATATCTAGGACATGGCATCAGCATTGATATGT
Found at i:24247510 original size:25 final size:25
Alignment explanation
Indices: 24247477--24247541 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
24247467 GTATACATAT
*
24247477 CATATTTCATTTCAATTATTTCGTA
1 CATACTTCATTTCAATTATTTCGTA
*
24247502 CATACTTCATTTCCATTATTTCGTA
1 CATACTTCATTTCAATTATTTCGTA
24247527 CATACTTCATATTCA
1 CATACTTCAT-TTCA
24247542 CTACTTCTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
25 33 0.92
26 3 0.08
ACGTcount: A:0.28, C:0.22, G:0.03, T:0.48
Consensus pattern (25 bp):
CATACTTCATTTCAATTATTTCGTA
Found at i:24247791 original size:42 final size:43
Alignment explanation
Indices: 24247713--24247812 Score: 123
Period size: 42 Copynumber: 2.3 Consensus size: 43
24247703 TCCCGAACGT
* **
24247713 GGTCTTACATGTAATTCAGTATCAATGCCTCTGTCCCAGACAG
1 GGTCTTACATGTAAATCAGTATCAATGCCAATGTCCCAGACAG
* *
24247756 GGTCTTACATG-AAATCAG-ATACGATGCCAATGTCCCAGACAT
1 GGTCTTACATGTAAATCAGTAT-CAATGCCAATGTCCCAGACAG
*
24247798 GGTCTTACACGTAAA
1 GGTCTTACATGTAAA
24247813 ATCCCAAATC
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
41 2 0.04
42 33 0.67
43 14 0.29
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (43 bp):
GGTCTTACATGTAAATCAGTATCAATGCCAATGTCCCAGACAG
Found at i:24254556 original size:32 final size:32
Alignment explanation
Indices: 24254519--24254597 Score: 113
Period size: 32 Copynumber: 2.5 Consensus size: 32
24254509 TAGTTGTGCT
* *
24254519 ACAAAGGCTATCTTTTACATTCAGTACTCCCC
1 ACAAAGGCTATCCTTTACATTCAATACTCCCC
* *
24254551 ACAAAGGCTTTCCTTTACATTCAATACTCTCC
1 ACAAAGGCTATCCTTTACATTCAATACTCCCC
*
24254583 ACAAAGGCTTTCCTT
1 ACAAAGGCTATCCTT
24254598 CTCGTGGTGA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (32 bp):
ACAAAGGCTATCCTTTACATTCAATACTCCCC
Found at i:24265756 original size:40 final size:40
Alignment explanation
Indices: 24265683--24265903 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
24265673 TATTCGGATG
*
24265683 ATAATCGGGCTAAGTCCCG-AGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
24265722 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
24265762 ATATCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
24265802 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* * *
24265842 ATAACCGGGCTAAATCCCGAAGGCATTTGAGTGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* *
24265882 ATATCC-GGCTAATTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
24265904 TACTTGGTTT
Statistics
Matches: 170, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
39 35 0.21
40 135 0.79
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:24284183 original size:69 final size:69
Alignment explanation
Indices: 24284067--24284207 Score: 246
Period size: 69 Copynumber: 2.0 Consensus size: 69
24284057 GGAGAGACCT
* *
24284067 TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATGCTTAAGGTCAACATATGACTTT
1 TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAACATATGACTTC
24284132 TGCC
66 TGCC
* *
24284136 TAAGGAAAACTAAGTCCTCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAGCATATGACTTC
1 TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAACATATGACTTC
24284201 TGCC
66 TGCC
24284205 TAA
1 TAA
24284208 CCGAGGCCTC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (69 bp):
TAAGGAAAACTAAGTCCCCCACTGCAAACTCTATTTCTTGATACTTAAGGTCAACATATGACTTC
TGCC
Found at i:24288575 original size:47 final size:47
Alignment explanation
Indices: 24288519--24288876 Score: 572
Period size: 47 Copynumber: 7.6 Consensus size: 47
24288509 TATTTGAATA
*
24288519 AATGTGAAAGTGTATCTATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
24288566 AAAGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
24288615 AATGTGAAAGTGCATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
24288662 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
24288709 AATGTGAAAGTGCATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
24288756 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
24288803 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
24288850 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
24288877 TCCCGAAGGG
Statistics
Matches: 292, Mismatches: 17, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
47 247 0.85
49 45 0.15
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:24292649 original size:18 final size:18
Alignment explanation
Indices: 24292622--24292675 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
24292612 TCAGGTTCTC
*
24292622 ATAATTATAATGAAAATA
1 ATAATAATAATGAAAATA
** *
24292640 ATAATAATAATTCAAGTA
1 ATAATAATAATGAAAATA
24292658 ATAATAACTTAATGAAAA
1 ATAATAA--TAATGAAAA
24292676 CCTTGTTACA
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 21 0.78
20 6 0.22
ACGTcount: A:0.59, C:0.04, G:0.06, T:0.31
Consensus pattern (18 bp):
ATAATAATAATGAAAATA
Found at i:24293575 original size:29 final size:29
Alignment explanation
Indices: 24293509--24293627 Score: 136
Period size: 29 Copynumber: 4.2 Consensus size: 29
24293499 TACATACATG
*
24293509 CATATGGCCCATTAGGCCC-AATCTTATT
1 CATATGGCCCATTAGGCCCAAATCATATT
* * **
24293537 CAAATGGCCCATTTGGCCCAGTTCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
* * *
24293566 CTTATGGCCCACTAGGCCCAATTC-TCATT
1 CATATGGCCCATTAGGCCCAAATCAT-ATT
24293595 CATATGGCCCATTAGGCCCAAATCATATT
1 CATATGGCCCATTAGGCCCAAATCATATT
24293624 -ATAT
1 CATAT
24293628 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
28 22 0.29
29 52 0.69
30 1 0.01
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCATATT
Found at i:24293613 original size:58 final size:57
Alignment explanation
Indices: 24293511--24293623 Score: 163
Period size: 58 Copynumber: 2.0 Consensus size: 57
24293501 CATACATGCA
* * * **
24293511 TATGGCCCATTAGGCCCAATCTTATTCAAATGGCCCATTTGGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
*
24293568 TATGGCCCACTAGGCCCAATTCTCATTCATATGGCCCATTAGGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCTCATTCAAATGGCCCATTAGGCCCAAATCATATT
24293624 ATATTCATGC
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
57 18 0.37
58 31 0.63
ACGTcount: A:0.25, C:0.29, G:0.15, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCTCATTCAAATGGCCCATTAGGCCCAAATCATATTCT
Found at i:24293741 original size:19 final size:19
Alignment explanation
Indices: 24293705--24293741 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
24293695 TAACCCATCA
*
24293705 GGCCCATTTAGCCCATTCC
1 GGCCCATTTAGCCAATTCC
*
24293724 GGCCCATTTGGCCAATTC
1 GGCCCATTTAGCCAATTC
24293742 TCAACCCTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.38, G:0.19, T:0.27
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCC
Found at i:24296127 original size:28 final size:29
Alignment explanation
Indices: 24296017--24296131 Score: 112
Period size: 29 Copynumber: 4.0 Consensus size: 29
24296007 GTGAGCATCA
* * *
24296017 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
* * *
24296045 ATATAAATGTCATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
24296074 --ATGTATAGGTGATTTGGGCCTAATGGGCC
1 ATATGAATA--TGATTTGGGCCTAATGGGCC
*
24296103 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
24296131 A
1 A
24296132 GATACAGGTA
Statistics
Matches: 72, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
27 4 0.06
28 26 0.36
29 36 0.50
31 6 0.08
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:24301430 original size:42 final size:42
Alignment explanation
Indices: 24301367--24301450 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
24301357 CCATATCTAA
**
24301367 CATAACCTAATTAACTGCATTTCCAACATGCCAACTCTCACT
1 CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
24301409 CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
1 CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
24301451 ACTTTGATCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.35, C:0.35, G:0.04, T:0.27
Consensus pattern (42 bp):
CATAACCTAATTAACCACATTTCCAACATGCCAACTCTCACT
Found at i:24302713 original size:21 final size:20
Alignment explanation
Indices: 24302685--24302724 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
24302675 TATGTATGAG
24302685 TTTTAATGATTGATGATAGA
1 TTTTAATGATTGATGATAGA
*
24302705 TTTTGAATGTTTGATGATAG
1 TTTT-AATGATTGATGATAG
24302725 TTATATAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (20 bp):
TTTTAATGATTGATGATAGA
Found at i:24305442 original size:20 final size:20
Alignment explanation
Indices: 24305396--24305443 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
24305386 AGTACGCTCG
24305396 GTTGAGCTCAAACGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
* * *
24305416 ATCGAGCTCAAATGAGCTGA
1 GTTGAGCTCAAACGAGCTGA
24305436 GTTGAGCT
1 GTTGAGCT
24305444 GGACGGAGCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (20 bp):
GTTGAGCTCAAACGAGCTGA
Found at i:24307054 original size:18 final size:19
Alignment explanation
Indices: 24307031--24307069 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
24307021 TTTATCTCAA
*
24307031 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
24307049 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
24307068 TT
1 TT
24307070 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:24307085 original size:48 final size:49
Alignment explanation
Indices: 24307033--24307136 Score: 115
Period size: 48 Copynumber: 2.2 Consensus size: 49
24307023 TATCTCAATT
* * *
24307033 TCTTTTTCCACTCT-TTTTTC-TTGTTCACATTCTTTTTCTCTCTCAAAC
1 TCTTTTTCCACTCTCTTTTTCAAT-CTCACATTCTTTTTCACTCTCAAAC
* ** *
24307081 TCTTTTT-CATTCTCTTTTTCAATCTCATTTTCTTTTTCACTCTCAATC
1 TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
24307129 TCTTTTTC
1 TCTTTTTC
24307137 TTTTTCTTTC
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
47 5 0.11
48 40 0.87
49 1 0.02
ACGTcount: A:0.12, C:0.28, G:0.01, T:0.59
Consensus pattern (49 bp):
TCTTTTTCCACTCTCTTTTTCAATCTCACATTCTTTTTCACTCTCAAAC
Found at i:24307108 original size:18 final size:18
Alignment explanation
Indices: 24307087--24307136 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
24307077 AAACTCTTTT
24307087 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
24307105 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
*
24307123 TCAATCTCTTTTTC
1 TCATTCTCTTTTTC
24307137 TTTTTCTTTC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.14, C:0.28, G:0.00, T:0.58
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:24307126 original size:24 final size:24
Alignment explanation
Indices: 24307062--24307143 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
24307052 CTTGTTCACA
*
24307062 TTCTTTTTCTCTCTCAAACTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
* * * * *
24307086 TTCATTCTCTTTTTCAATCTCATT
1 TTCTTTTTCTCTCTCAATCTCTTT
*
24307110 TTCTTTTTCACTCTCAATCTCTTT
1 TTCTTTTTCTCTCTCAATCTCTTT
24307134 TTCTTTTTCT
1 TTCTTTTTCT
24307144 TTCATTTCTT
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.12, C:0.27, G:0.00, T:0.61
Consensus pattern (24 bp):
TTCTTTTTCTCTCTCAATCTCTTT
Found at i:24307195 original size:42 final size:42
Alignment explanation
Indices: 24307140--24307236 Score: 142
Period size: 42 Copynumber: 2.3 Consensus size: 42
24307130 CTTTTTCTTT
* * *
24307140 TTCTTTCA-TTTCTTTGTTTCTTTTCTCGATTTCATTCAAGA
1 TTCTCTCATTTTCTTTGTTTCTTCTCTCGATTTCATTCAAAA
*
24307181 TTCTCTCATTTTCTTTGTTTCTTCTCTTGATTTCATTCAAAA
1 TTCTCTCATTTTCTTTGTTTCTTCTCTCGATTTCATTCAAAA
*
24307223 TCCTCTCATTTTCT
1 TTCTCTCATTTTCT
24307237 CTCATAATCT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 7 0.14
42 43 0.86
ACGTcount: A:0.14, C:0.23, G:0.05, T:0.58
Consensus pattern (42 bp):
TTCTCTCATTTTCTTTGTTTCTTCTCTCGATTTCATTCAAAA
Found at i:24315560 original size:24 final size:24
Alignment explanation
Indices: 24315530--24315576 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
24315520 AAACCACATA
24315530 TTTACTATATATACCTAAAATGAT
1 TTTACTATATATACCTAAAATGAT
24315554 TTTACTATATATACCTAAAATGA
1 TTTACTATATATACCTAAAATGA
24315577 GCTAGTAGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.40
Consensus pattern (24 bp):
TTTACTATATATACCTAAAATGAT
Found at i:24315759 original size:29 final size:29
Alignment explanation
Indices: 24315670--24315759 Score: 69
Period size: 29 Copynumber: 3.2 Consensus size: 29
24315660 AGCATTACAT
*
24315670 ACTTAGTAAGTTTGTATAATAGAAACTAA
1 ACTTAGTAAGTTCGTATAATAGAAACTAA
** * * * ** *
24315699 ACTTACCAA-TCCCATTTAATA-TTAC-AT
1 ACTTAGTAAGT-TCGTATAATAGAAACTAA
24315726 ACTTAGTAAGTTCGTATAATAGAAACTAA
1 ACTTAGTAAGTTCGTATAATAGAAACTAA
24315755 ACTTA
1 ACTTA
24315760 CCAATCTTGT
Statistics
Matches: 40, Mismatches: 17, Indels: 8
0.62 0.26 0.12
Matches are distributed among these distances:
27 15 0.38
28 6 0.15
29 19 0.47
ACGTcount: A:0.42, C:0.14, G:0.09, T:0.34
Consensus pattern (29 bp):
ACTTAGTAAGTTCGTATAATAGAAACTAA
Found at i:24335070 original size:29 final size:29
Alignment explanation
Indices: 24335035--24335092 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
24335025 CTCTAAATTA
24335035 GGATCCACTAATTTTACCTGAAATTAGAC
1 GGATCCACTAATTTTACCTGAAATTAGAC
24335064 GGATCCACTAATTTTACCTGAAATTAGAC
1 GGATCCACTAATTTTACCTGAAATTAGAC
24335093 TCACATATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.31
Consensus pattern (29 bp):
GGATCCACTAATTTTACCTGAAATTAGAC
Found at i:24336100 original size:52 final size:52
Alignment explanation
Indices: 24336029--24336130 Score: 141
Period size: 52 Copynumber: 2.0 Consensus size: 52
24336019 ACCCAATTAT
* * * * * *
24336029 ATGTGTCGCATCCATTATGAACTCGGACCAACTGAATGAGCTCGGATGCCAC
1 ATGTATCGCATCCATTATGAACCCAGACCAACTCAACGAGCTCGAATGCCAC
*
24336081 ATGTATCGTATCCATTATGAACCCAGACCAACTCAACGAGCTCGAATGCC
1 ATGTATCGCATCCATTATGAACCCAGACCAACTCAACGAGCTCGAATGCC
24336131 GCATACATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (52 bp):
ATGTATCGCATCCATTATGAACCCAGACCAACTCAACGAGCTCGAATGCCAC
Found at i:24341046 original size:43 final size:44
Alignment explanation
Indices: 24340924--24341098 Score: 143
Period size: 43 Copynumber: 4.1 Consensus size: 44
24340914 AAAGCTCATA
* * *
24340924 CAATGCCAAC-GTCCCAGACGTGGTCTAACATGT-AATCAAATAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCAAATAT
* * *
24340967 CGATGCCACTGTCCTAGACAGGGTCTTACACG-AAATCAAATA-
1 CAATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAAATAT
* *
24341009 CAATGCTGA-TGTCCCAGACATGGTCTTACACGTAAATCATAA-GT
1 CAATGC-CACTGTCCCAGACATGGTCTTACACGTAAATCA-AATAT
* * *
24341053 CAATGCCAAC-GTCCCAAACGTGTTCTTACACG-AAAT-AACATAT
1 CAATGCC-ACTGTCCCAGACATGGTCTTACACGTAAATCAA-ATAT
24341096 CAA
1 CAA
24341099 AAATTCTATT
Statistics
Matches: 106, Mismatches: 16, Indels: 20
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 30 0.28
43 47 0.44
44 28 0.26
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (44 bp):
CAATGCCACTGTCCCAGACATGGTCTTACACGTAAATCAAATAT
Found at i:24347768 original size:50 final size:50
Alignment explanation
Indices: 24347648--24347992 Score: 278
Period size: 50 Copynumber: 6.7 Consensus size: 50
24347638 TTGTGAGAAT
* * * *** *
24347648 ACATGTGTAGTACTATGTGCAAGCTACTATGTGTTTAAGATGGTTTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTC
* * *
24347700 ACGTGTATAGTACTAAGTGCAGGCTACTACGTATACCAGATAGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
* * * * * * * * * * *
24347750 GCATGTGTAGGACTAAGTGCAAGCTCCTATGCGTACCCGAAAACCTCA-ATC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAG-ATA-GTTAGGTC
*** * ** *
24347801 TTGTGTGTAGTACTAAGTGCAGGCTACTACATGTATTAGATGGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
* * * * *
24347851 ACGTGTGCAGTCCTAAGTGCAGGCCACAACGTGTACCAGATAGTTAGGTC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
* * *
24347901 GCATGTGTAGTACTAAGTTCAGGTTAGGCTACTACGTGTATCAGATAGTTAGGTC
1 ACATGTGTAGTACTAAG-T---G-CAGGCTACTACGTGTACCAGATAGTTAGGTC
24347956 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
1 ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACC
24347993 GGATTGCTGG
Statistics
Matches: 223, Mismatches: 62, Indels: 18
0.74 0.20 0.06
Matches are distributed among these distances:
49 2 0.01
50 108 0.48
51 33 0.15
52 35 0.16
54 2 0.01
55 43 0.19
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC
Found at i:24347952 original size:105 final size:104
Alignment explanation
Indices: 24347821--24348009 Score: 270
Period size: 105 Copynumber: 1.8 Consensus size: 104
24347811 TACTAAGTGC
* * * *
24347821 AGGCTACTACATGTATTAGATGGTTAGGTCACGTGTGCAGTCCTAAGTGCAGGCCACAACGTGTA
1 AGGCTACTACATGTATCAGATAGTTAGGTCACATGTGCAGTACTAAGTGCAGGCCACAACGTGTA
*
24347886 CCAGATAGTTAGGTCGCATGTGTAGTACTAAGTTCAGGTT
66 CCAGATAGCT-GGTCGCATGTGTAGTACTAAGTTCAGGTT
* * * *
24347926 AGGCTACTACGTGTATCAGATAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA
1 AGGCTACTACATGTATCAGATAGTTAGGTCACATGTGCAGTACTAAGTGCAGGCCACAACGTGTA
* *
24347991 CCGGATTGCTGGTCGCATG
66 CCAGATAGCTGGTCGCATG
24348010 AGTGCAGCCT
Statistics
Matches: 73, Mismatches: 11, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
104 9 0.12
105 64 0.88
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.29
Consensus pattern (104 bp):
AGGCTACTACATGTATCAGATAGTTAGGTCACATGTGCAGTACTAAGTGCAGGCCACAACGTGTA
CCAGATAGCTGGTCGCATGTGTAGTACTAAGTTCAGGTT
Found at i:24348256 original size:16 final size:15
Alignment explanation
Indices: 24348235--24348264 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
24348225 GAATGGAGTA
24348235 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
24348251 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
24348265 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:24354735 original size:50 final size:50
Alignment explanation
Indices: 24354616--24354911 Score: 263
Period size: 50 Copynumber: 5.9 Consensus size: 50
24354606 ATTGTGAGAA
* * *** *
24354616 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* *
24354668 CACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * * * * * *
24354718 CGTATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * * ** **
24354769 CACGTGTGTACTAGTAAGTGCAGGCTACTACGTGTATAAGACGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * *
24354819 CATGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * *
24354868 CACATGTGTAGTACTAAGTACAGGCTACTATGCGTACTAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
24354912 CTTCAGTTAC
Statistics
Matches: 195, Mismatches: 46, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
49 42 0.22
50 81 0.42
51 35 0.18
52 37 0.19
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:24354817 original size:101 final size:101
Alignment explanation
Indices: 24354667--24354848 Score: 256
Period size: 101 Copynumber: 1.8 Consensus size: 101
24354657 TGGTTTTAGG
* * * *
24354667 TCACATGTGTAGTACTAAGTGCAAGCTACTACATGTACCAGATAGTTAGGTCGTATGTGTAGTAC
1 TCACATGTGTACTACTAAGTGCAAGCTACTACATGTACAAGACAGTTAGGTCATATGTGTAGTAC
*
24354732 TAAGTGCAGGCTACTATGCGTACCCGACAACTTCAA
66 TAAGTACAGGCTACTATGCGTACCCGACAACTTCAA
* * * * * * *
24354768 TCACGTGTGTACTAGTAAGTGCAGGCTACTACGTGTATAAGACGGTTAGGTCATGTGTGTAGTAC
1 TCACATGTGTACTACTAAGTGCAAGCTACTACATGTACAAGACAGTTAGGTCATATGTGTAGTAC
24354833 TAAGTACAGGCTACTA
66 TAAGTACAGGCTACTA
24354849 CGTGTACCAG
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
101 69 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (101 bp):
TCACATGTGTACTACTAAGTGCAAGCTACTACATGTACAAGACAGTTAGGTCATATGTGTAGTAC
TAAGTACAGGCTACTATGCGTACCCGACAACTTCAA
Found at i:24357683 original size:29 final size:28
Alignment explanation
Indices: 24357647--24357724 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
24357637 TCATGAGATT
24357647 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
24357677 -GCACTAAGTGTGTGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
24357704 TGGCACTAAGTGTGCGTGGTT
1 -GGCACTAAGTGTGCG-GGTT
24357725 GATTATTAAG
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 5 0.12
29 33 0.80
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.31, T:0.31
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Done.