Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 75 of 259
Found at i:24357945 original size:174 final size:174
Alignment explanation
Indices: 24357677--24358004 Score: 602
Period size: 174 Copynumber: 1.9 Consensus size: 174
24357667 AAATTGTACA
*
24357677 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* * *
24357742 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTCCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
24357807 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
*
24357851 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
24357916 TGTGCGAACCCAATATATATTTCCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTCCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
24357981 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
24358005 ACCTTGAGTT
Statistics
Matches: 148, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
174 148 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGTGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTCCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:24359479 original size:17 final size:14
Alignment explanation
Indices: 24359443--24359470 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24359433 CATTATAACA
24359443 AAAACATATTAGCT
1 AAAACATATTAGCT
24359457 AAAACATATTAGCT
1 AAAACATATTAGCT
24359471 CATAAAACAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AAAACATATTAGCT
Found at i:24360149 original size:42 final size:41
Alignment explanation
Indices: 24360101--24360294 Score: 160
Period size: 43 Copynumber: 4.6 Consensus size: 41
24360091 TCAATGCCTC
* * *
24360101 TGTCCCATACAAGGTCTTACACGAAA-TCAGATACGATGCCGA
1 TGTCCCAGACACGGTCTTACACGAAACTCA-AT-CGAGGCCGA
* *
24360143 TGTCCCAGACATGGTCTTATACGTAAATCTCAATCGAGGCCTG-
1 TGTCCCAGACACGGTCTTACACG-AAA-CTCAATCGAGGCC-GA
* * ** *
24360186 TCTCCCAGACACGGTCTTACATGAAA-TCAGATACGTTGCTGA
1 TGTCCCAGACACGGTCTTACACGAAACTCA-AT-CGAGGCCGA
* * * *
24360228 TGTCCCAGACATGGTCTTATACTTAAATCTCAATCGAGGCCTA
1 TGTCCCAGACACGGTCTTACAC-GAAA-CTCAATCGAGGCCGA
24360271 TGTCCCAGACACGGTCTTACACGA
1 TGTCCCAGACACGGTCTTACACGA
24360295 TATCTCAGAC
Statistics
Matches: 119, Mismatches: 23, Indels: 20
0.73 0.14 0.12
Matches are distributed among these distances:
40 3 0.03
41 3 0.03
42 46 0.39
43 56 0.47
44 5 0.04
45 6 0.05
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (41 bp):
TGTCCCAGACACGGTCTTACACGAAACTCAATCGAGGCCGA
Found at i:24360202 original size:85 final size:85
Alignment explanation
Indices: 24360103--24360294 Score: 312
Period size: 85 Copynumber: 2.3 Consensus size: 85
24360093 AATGCCTCTG
* *
24360103 TCCCATACAAGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTA
1 TCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTA
*
24360168 AATCTCAATCGAGGCCTGTC
66 AATCTCAATCGAGGCCTATC
* * * *
24360188 TCCCAGACACGGTCTTACATGAAATCAGATACGTTGCTGATGTCCCAGACATGGTCTTATACTTA
1 TCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTA
*
24360253 AATCTCAATCGAGGCCTATG
66 AATCTCAATCGAGGCCTATC
24360273 TCCCAGACACGGTCTTACACGA
1 TCCCAGACACGGTCTTACACGA
24360295 TATCTCAGAC
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
85 98 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.26
Consensus pattern (85 bp):
TCCCAGACACGGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACATGGTCTTATACGTA
AATCTCAATCGAGGCCTATC
Found at i:24363891 original size:29 final size:28
Alignment explanation
Indices: 24363855--24363932 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
24363845 TCATGAGATT
24363855 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
24363885 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
24363912 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
24363933 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:24364196 original size:172 final size:174
Alignment explanation
Indices: 24363885--24364210 Score: 548
Period size: 172 Copynumber: 1.9 Consensus size: 174
24363875 AAATTGTACA
* *
24363885 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
24363950 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
24364015 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
24364059 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
24364124 -GTGC-AATCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
24364187 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
24364211 ACCTTGAGTT
Statistics
Matches: 142, Mismatches: 10, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
172 79 0.56
173 4 0.03
174 59 0.42
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:24368250 original size:14 final size:14
Alignment explanation
Indices: 24368231--24368261 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
24368221 AGCTTTGTGG
24368231 GCATATTCTATTGT
1 GCATATTCTATTGT
24368245 GCATATTCTATTGT
1 GCATATTCTATTGT
24368259 GCA
1 GCA
24368262 AATATGCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.16, G:0.16, T:0.45
Consensus pattern (14 bp):
GCATATTCTATTGT
Found at i:24377864 original size:19 final size:19
Alignment explanation
Indices: 24377840--24377885 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
24377830 GGGGTATATC
24377840 GGTAATTTTGCTCTTTAGG
1 GGTAATTTTGCTCTTTAGG
24377859 GGTAATTTTGCTCTTTAGG
1 GGTAATTTTGCTCTTTAGG
24377878 GGTAATTT
1 GGTAATTT
24377886 GCCCATCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.17, C:0.09, G:0.26, T:0.48
Consensus pattern (19 bp):
GGTAATTTTGCTCTTTAGG
Found at i:24381612 original size:39 final size:40
Alignment explanation
Indices: 24381461--24381630 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
24381451 GGACTAAGAT
* * *
24381461 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
24381501 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
24381541 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
24381581 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
24381620 CCGAAGGCATT
1 CCGAAGGCATT
24381631 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:24381650 original size:79 final size:80
Alignment explanation
Indices: 24381483--24381665 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
24381473 GTGCGAGATA
* * * *
24381483 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
24381548 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
24381563 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
24381627 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
24381642 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
24381666 TACGTGAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:24389509 original size:39 final size:40
Alignment explanation
Indices: 24389358--24389527 Score: 207
Period size: 40 Copynumber: 4.3 Consensus size: 40
24389348 GGACTAAGAT
* * *
24389358 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
24389398 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
24389438 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * *
24389478 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
24389517 CCGAAGGCATT
1 CCGAAGGCATT
24389528 TGAACGAGGA
Statistics
Matches: 112, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.29
40 80 0.71
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:24389547 original size:79 final size:80
Alignment explanation
Indices: 24389380--24389562 Score: 208
Period size: 79 Copynumber: 2.3 Consensus size: 80
24389370 GTGCGAGATA
* * * *
24389380 CTAAATCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
24389445 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
24389460 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
24389524 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
24389539 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
24389563 TACGTGAATT
Statistics
Matches: 85, Mismatches: 18, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.16
79 47 0.55
80 24 0.28
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:24408340 original size:40 final size:40
Alignment explanation
Indices: 24408244--24408504 Score: 294
Period size: 40 Copynumber: 6.5 Consensus size: 40
24408234 CTCGTTCAAG
* * * * *
24408244 TGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* *
24408283 TGCCTTCGGGACATAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
*
24408323 TGCCTTCGGGACTTAACCCGAATTTAATAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
*
24408363 TGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* * *
24408403 TGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
* ** * * * *
24408443 GGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-AA
1 TGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACGAA
* *
24408483 AGCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGACTTAACCCGGA
24408505 CAGCATTCAA
Statistics
Matches: 194, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
39 35 0.18
40 151 0.78
41 8 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACGAA
Found at i:24408513 original size:41 final size:41
Alignment explanation
Indices: 24408436--24408513 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
24408426 TTAGTATCTC
* * *
24408436 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
24408477 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
24408514 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:24410136 original size:28 final size:28
Alignment explanation
Indices: 24410104--24410193 Score: 135
Period size: 29 Copynumber: 3.1 Consensus size: 28
24410094 CACATACCTA
*
24410104 TATATGGCCCATTAGGCCTAATCACATT
1 TATATGGCCCATTAGGCCAAATCACATT
*
24410132 TATATGGCCCACTAGGGCCAAATCACATT
1 TATATGGCCCATTA-GGCCAAATCACATT
*
24410161 TATATGGCCCATCAGGACCAAATCACATT
1 TATATGGCCCATTAGG-CCAAATCACATT
24410190 TATA
1 TATA
24410194 GTCATGCTCA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
28 15 0.27
29 41 0.73
ACGTcount: A:0.32, C:0.26, G:0.14, T:0.28
Consensus pattern (28 bp):
TATATGGCCCATTAGGCCAAATCACATT
Found at i:24410433 original size:16 final size:16
Alignment explanation
Indices: 24410410--24410448 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
24410400 TCAAACTTTT
* *
24410410 AACTTTTCGGTATTTC
1 AACTTTTCAGCATTTC
*
24410426 AGCTTTTCAGCATTTC
1 AACTTTTCAGCATTTC
24410442 AACTTTT
1 AACTTTT
24410449 GCCGATCTAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.49
Consensus pattern (16 bp):
AACTTTTCAGCATTTC
Found at i:24425446 original size:24 final size:23
Alignment explanation
Indices: 24425371--24425463 Score: 69
Period size: 24 Copynumber: 4.0 Consensus size: 23
24425361 CCGATATATC
* *
24425371 AGCTCGTAAGAGCTTACTGTTTT
1 AGCTCATAAAAGCTTACTGTTTT
* * * *
24425394 CATCTCGTTAGAGCTTACTGTTTT
1 -AGCTCATAAAAGCTTACTGTTTT
*
24425418 AGCTCATAAAAGCTTACTATTTTT
1 AGCTCATAAAAGCTTACT-GTTTT
* * * *
24425442 TGCTCGTCAAAGCTTACAGTTT
1 AGCTCATAAAAGCTTACTGTTT
24425464 CAACTCAATA
Statistics
Matches: 56, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
23 17 0.30
24 39 0.70
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (23 bp):
AGCTCATAAAAGCTTACTGTTTT
Found at i:24425448 original size:47 final size:47
Alignment explanation
Indices: 24425371--24425463 Score: 107
Period size: 47 Copynumber: 2.0 Consensus size: 47
24425361 CCGATATATC
* * * * * *
24425371 AGCTCGTAAGAGCTTACTGTTTTCATCTCGTTAGAGCTTACTGTTTT
1 AGCTCATAAAAGCTTACTATTTTCATCTCGTCAAAGCTTACAGTTTT
*
24425418 AGCTCATAAAAGCTTACTATTTT-TTGCTCGTCAAAGCTTACAGTTT
1 AGCTCATAAAAGCTTACTATTTTCAT-CTCGTCAAAGCTTACAGTTT
24425464 CAACTCAATA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
46 1 0.03
47 37 0.97
ACGTcount: A:0.24, C:0.19, G:0.16, T:0.41
Consensus pattern (47 bp):
AGCTCATAAAAGCTTACTATTTTCATCTCGTCAAAGCTTACAGTTTT
Found at i:24426588 original size:75 final size:75
Alignment explanation
Indices: 24426488--24426631 Score: 243
Period size: 75 Copynumber: 1.9 Consensus size: 75
24426478 TACACGGCTA
* *
24426488 TGTGTCCCCTGGTGTTGAATTAAAATAAAGTCAGTATGCTCCACACGGTCTCACACACGGGCGTG
1 TGTGTCCCCTAGTGTTGAATTAAAATAAAGTCAGTATGCTCCACACGGTCTCACACACGGGCATG
24426553 TGACTAGCCG
66 TGACTAGCCG
* * *
24426563 TGTGTCCCCTAGTGTTGAATTAAAATAAAGTGAGTATGCTCTACATGGTCTCACACACGGGCATG
1 TGTGTCCCCTAGTGTTGAATTAAAATAAAGTCAGTATGCTCCACACGGTCTCACACACGGGCATG
24426628 TGAC
66 TGAC
24426632 CGGCTGTGTG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 64 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (75 bp):
TGTGTCCCCTAGTGTTGAATTAAAATAAAGTCAGTATGCTCCACACGGTCTCACACACGGGCATG
TGACTAGCCG
Found at i:24426641 original size:75 final size:75
Alignment explanation
Indices: 24426464--24426641 Score: 239
Period size: 75 Copynumber: 2.4 Consensus size: 75
24426454 ACCGTGTGTG
** * * *
24426464 ACACACGGTTATGTTACACGGCTATGTGTCCCCTGGTGTTGAATTAAAATAAAGTCAGTATGCTC
1 ACACACGGGCATGTGAC-CGGCTGTGTGTCCCCTAGTGTTGAATTAAAATAAAGTCAGTATGCTC
24426529 CACACGGTCTC
65 CACACGGTCTC
* ** * * *
24426540 ACACACGGGCGTGTGACTAGCCGTGTGTCCCCTAGTGTTGAATTAAAATAAAGTGAGTATGCTCT
1 ACACACGGGCATGTGACCGGCTGTGTGTCCCCTAGTGTTGAATTAAAATAAAGTCAGTATGCTCC
*
24426605 ACATGGTCTC
66 ACACGGTCTC
24426615 ACACACGGGCATGTGACCGGCTGTGTG
1 ACACACGGGCATGTGACCGGCTGTGTG
24426642 GTACAAGTCA
Statistics
Matches: 86, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
75 73 0.85
76 13 0.15
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (75 bp):
ACACACGGGCATGTGACCGGCTGTGTGTCCCCTAGTGTTGAATTAAAATAAAGTCAGTATGCTCC
ACACGGTCTC
Found at i:24427204 original size:20 final size:20
Alignment explanation
Indices: 24427170--24427263 Score: 86
Period size: 20 Copynumber: 4.8 Consensus size: 20
24427160 ATGGGATTTT
* *
24427170 CACTTCGGTGCCCCTGTATA
1 CACTTTGGTGTCCCTGTATA
*
24427190 CACTTTAGTGTCCCTGT-TCA
1 CACTTTGGTGTCCCTGTAT-A
** *
24427210 CACTGCGGTGCCCCTGTATA
1 CACTTTGGTGTCCCTGTATA
24427230 CACTTTGGTGTCCCTGT-TCA
1 CACTTTGGTGTCCCTGTAT-A
*
24427250 CACTATGGTG-CCCT
1 CACTTTGGTGTCCCT
24427264 TATTTGCACA
Statistics
Matches: 60, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
19 6 0.10
20 53 0.88
21 1 0.02
ACGTcount: A:0.14, C:0.33, G:0.20, T:0.33
Consensus pattern (20 bp):
CACTTTGGTGTCCCTGTATA
Found at i:24427221 original size:40 final size:40
Alignment explanation
Indices: 24427170--24427262 Score: 150
Period size: 40 Copynumber: 2.3 Consensus size: 40
24427160 ATGGGATTTT
*
24427170 CACTTCGGTGCCCCTGTATACACTTTAGTGTCCCTGTTCA
1 CACTACGGTGCCCCTGTATACACTTTAGTGTCCCTGTTCA
* *
24427210 CACTGCGGTGCCCCTGTATACACTTTGGTGTCCCTGTTCA
1 CACTACGGTGCCCCTGTATACACTTTAGTGTCCCTGTTCA
*
24427250 CACTATGGTGCCC
1 CACTACGGTGCCC
24427263 TTATTTGCAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.14, C:0.33, G:0.20, T:0.32
Consensus pattern (40 bp):
CACTACGGTGCCCCTGTATACACTTTAGTGTCCCTGTTCA
Found at i:24431217 original size:23 final size:22
Alignment explanation
Indices: 24431186--24431229 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
24431176 TTATGAAACA
* *
24431186 TATGTTTTGGTATGACTTTGGTT
1 TATGATTTGGCATGA-TTTGGTT
24431209 TATGATTTGGCATGATTTGGT
1 TATGATTTGGCATGATTTGGT
24431230 ATAGATTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.16, C:0.05, G:0.27, T:0.52
Consensus pattern (22 bp):
TATGATTTGGCATGATTTGGTT
Found at i:24435485 original size:27 final size:27
Alignment explanation
Indices: 24435455--24435631 Score: 113
Period size: 27 Copynumber: 6.5 Consensus size: 27
24435445 ATATTGAGCC
* * * *
24435455 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCCACACAATCAAAT
**
24435482 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
24435509 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACACAAT-CAAAT
* *** *
24435537 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
24435564 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CACAATCAAAT
* * * *
24435591 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
*
24435618 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
24435632 TGTACAATTT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACACAATCAAAT
Found at i:24435547 original size:55 final size:55
Alignment explanation
Indices: 24435455--24435631 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
24435445 ATATTGAGCC
* * * * *
24435455 CGCACACTCAGTGCTATACA-AT-CAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
24435509 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
24435564 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
24435618 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
24435632 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.55
55 43 0.42
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:24435594 original size:82 final size:81
Alignment explanation
Indices: 24435476--24435631 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
24435466 TGCTATACAA
* * * **
24435476 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCA
24435541 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24435558 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
24435622 CCCTTAGTGC
65 CACTTAGTGC
24435632 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24443600 original size:28 final size:27
Alignment explanation
Indices: 24443508--24443680 Score: 144
Period size: 26 Copynumber: 6.5 Consensus size: 27
24443498 ATATTGAGCC
* * * *
24443508 CGCACACTCAGTGCTATATAATCA-ACT
1 CGCACACTTAGTGCCACATAGTCATA-T
* * *
24443535 CGCACACTTAGTG-CACGTAATCAAAT
1 CGCACACTTAGTGCCACATAGTCATAT
*
24443561 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACATAGT-CATAT
* *
24443589 CGCACACTTAGTGCCGCATGGTCA-ATT
1 CGCACACTTAGTGCCACATAGTCATA-T
*
24443616 CGCACACTTAGTG-CATCATA-TCATTT
1 CGCACACTTAGTGCCA-CATAGTCATAT
* *
24443642 CGCACACTGAGTGCAACATAGTCA-AT
1 CGCACACTTAGTGCCACATAGTCATAT
24443668 CGCAC-CTTAGTGC
1 CGCACACTTAGTGC
24443681 TGTACAATTT
Statistics
Matches: 120, Mismatches: 18, Indels: 18
0.77 0.12 0.12
Matches are distributed among these distances:
25 7 0.06
26 48 0.40
27 42 0.35
28 23 0.19
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAGTCATAT
Found at i:24443645 original size:81 final size:78
Alignment explanation
Indices: 24443529--24443680 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 78
24443519 TGCTATATAA
* * * *
24443529 TCAACTCGCACACTTAGTGCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCAC
1 TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTGAGTGCAACATAGT-CA-ATCGCAC
24443594 ACTTAGTGCCGCATGG
64 -CTTAGTGCCGCATGG
* **
24443610 TCAATTCGCACACTTAGTGCATCAT-ATCATTTCGCACACTGAGTGCAACATAGTCAATCGCACC
1 TCAACTCGCACACTTAGTGCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAATCGCACC
24443674 TTAGTGC
65 TTAGTGC
24443681 TGTACAATTT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
78 8 0.13
79 6 0.10
80 2 0.03
81 45 0.71
82 2 0.03
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (78 bp):
TCAACTCGCACACTTAGTGCACATAATCAAATCGCACACTGAGTGCAACATAGTCAATCGCACCT
TAGTGCCGCATGG
Found at i:24443666 original size:53 final size:51
Alignment explanation
Indices: 24443508--24443680 Score: 172
Period size: 53 Copynumber: 3.3 Consensus size: 51
24443498 ATATTGAGCC
* * * *
24443508 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCACGTAATCAAAT
1 CGCACACTTAGTGC-ATCAT-ATCATCTCGCACACTTAGTGCACATAGTC-AAT
* *
24443561 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTG-CATCATA-T-CATCTCGCACACTTAGTG-CACATAGTCAA-T
* *
24443616 CGCACACTTAGTGCATCATATCATTTCGCACACTGAGTGCAACATAGTCAAT
1 CGCACACTTAGTGCATCATATCATCTCGCACACTTAGTGC-ACATAGTCAAT
24443668 CGCAC-CTTAGTGC
1 CGCACACTTAGTGC
24443681 TGTACAATTT
Statistics
Matches: 102, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
51 8 0.08
52 8 0.08
53 40 0.39
54 23 0.23
55 23 0.23
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.25
Consensus pattern (51 bp):
CGCACACTTAGTGCATCATATCATCTCGCACACTTAGTGCACATAGTCAAT
Found at i:24445474 original size:39 final size:39
Alignment explanation
Indices: 24445412--24445501 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
24445402 GGGTTGTCAC
* *
24445412 AAATATATCCGGACATGATGTCCGCAGGCTATATGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGG
* *
24445451 AAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGG
1 AAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGG
*
24445490 AAAAATATCCGG
1 AAATATATCCGG
24445502 GTTAAAGACT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 46 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (39 bp):
AAATATATCCGGACATGAGGTCCGCAGGCTACATGCTGG
Found at i:24448797 original size:38 final size:38
Alignment explanation
Indices: 24448734--24448888 Score: 168
Period size: 38 Copynumber: 4.1 Consensus size: 38
24448724 AAGCTTGAAA
* * * **
24448734 ATAATACCAGCACTAAGCTTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTACGGGATAAAACCCGGAT
*
24448772 ATAATACCAGCACGAAGCCTACGGGATAAAACCCAGAT
1 ATAATACCAGCACGAAGCCTACGGGATAAAACCCGGAT
* * **
24448810 ATAATACCAACACGAAGCCTGCGGGATAAAACTTGGAT
1 ATAATACCAGCACGAAGCCTACGGGATAAAACCCGGAT
* * **
24448848 ATAATACCAGTACTAAGCC-AGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTA-CGGGATAAAACCCGGAT
24448886 ATA
1 ATA
24448889 TATCAAATAT
Statistics
Matches: 97, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
38 97 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTACGGGATAAAACCCGGAT
Found at i:24448833 original size:76 final size:76
Alignment explanation
Indices: 24448734--24448888 Score: 186
Period size: 76 Copynumber: 2.0 Consensus size: 76
24448724 AAGCTTGAAA
* * * **
24448734 ATAATACCAGCACTAAGCTTGCGGGATTTAACCCGGATATAATACCAGCACGAAGCCTA-CGGGA
1 ATAATACCAACACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACGAAGCC-AGCGGGA
24448798 TAAAACCCAGAT
65 TAAAACCCAGAT
** * *
24448810 ATAATACCAACACGAAGCCTGCGGGATAAAACTTGGATATAATACCAGTACTAAGCCAGCGGGAT
1 ATAATACCAACACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCAGCGGGAT
** *
24448875 TTAACCCGGAT
66 AAAACCCAGAT
24448886 ATA
1 ATA
24448889 TATCAAATAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
75 1 0.02
76 65 0.98
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.19
Consensus pattern (76 bp):
ATAATACCAACACGAAGCCTGCGGGATAAAACCCGGATATAATACCAGCACGAAGCCAGCGGGAT
AAAACCCAGAT
Found at i:24453916 original size:78 final size:78
Alignment explanation
Indices: 24453813--24454106 Score: 468
Period size: 78 Copynumber: 3.8 Consensus size: 78
24453803 CGAAGAAACA
* * *
24453813 GATTTGGCATCTCTATATTAGACGGGGAGCAGATCGAAGACACAGCAGATCT-GACCTTCATTGA
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGAT-TGGACCTTCATTGA
24453877 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * *
24453891 GATTTGGCATCTTTGTATTAAACGGGGAGCAGATCGAAGACATAGCAAATTGGACCGTCATTGAA
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
24453956 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
24453969 GATTTGGCATCTTTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
24454034 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* *
24454047 GATTTGGCATCTCTGTATTAGACGGGGAGTAGAT-GAAGACATAGCAGATCT-GACCTTCAT
1 GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGAT-TGGACCTTCAT
24454107 GTGTTTACAT
Statistics
Matches: 203, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
77 25 0.12
78 178 0.88
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAAACGGGGAGCAGATCGAAGACATAGCAGATTGGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:24454246 original size:44 final size:45
Alignment explanation
Indices: 24454047--24454274 Score: 207
Period size: 45 Copynumber: 5.1 Consensus size: 45
24454037 GATCCAAGAT
*
24454047 GATTTGGCATCTCTGTATTAGACGGGGAGTAGAT-GAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAGCA
* * * * * * *
24454093 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGAT-GACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAG-CA
* * *
24454138 GATTTGGCATCTCTGTATTAGATGGGGAGCAAATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
* * *
24454183 GATTTGGCATCTTTCTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
** *
24454227 GATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
24454272 GAT
1 GAT
24454275 ATCGCCTTCT
Statistics
Matches: 142, Mismatches: 30, Indels: 21
0.74 0.16 0.11
Matches are distributed among these distances:
44 42 0.30
45 73 0.51
46 19 0.13
47 7 0.05
48 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAGCA
Found at i:24454695 original size:35 final size:37
Alignment explanation
Indices: 24454624--24454721 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
24454614 ATAATCTTCA
24454624 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
24454662 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
24454697 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
24454722 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:24454721 original size:17 final size:19
Alignment explanation
Indices: 24454624--24454714 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
24454614 ATAATCTTCA
24454624 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24454643 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24454662 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24454679 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
24454697 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
24454715 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:24454740 original size:22 final size:22
Alignment explanation
Indices: 24454624--24454737 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
24454614 ATAATCTTCA
24454624 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24454643 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24454662 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24454679 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
24454697 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
24454719 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
24454738 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:24456212 original size:39 final size:38
Alignment explanation
Indices: 24456166--24456383 Score: 222
Period size: 39 Copynumber: 5.6 Consensus size: 38
24456156 CAGTGATGTT
* *
24456166 TATCCGGACTTAGGGTCCACATGCTATGTGCTGGAATTA
1 TATCCGGAC-TAGGGTCCGCAGGCTATGTGCTGGAATTA
*
24456205 TATCCGGACTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
24456243 TATCCAGACTAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
24456281 TATCTGGACTTAAGGTCCGCAGGTTATGTGCTAGAATTA
1 TATCCGGAC-TAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * * *
24456320 TAAT-TGGACTTAAGGTTCGCAGGCTACGTGCTGGAAATA
1 T-ATCCGGAC-TAGGGTCCGCAGGCTATGTGCTGGAATTA
* * **
24456359 TGTCTGGACTAAAGTCTCGCAGGCT
1 TATCCGGACTAGGGTC-CGCAGGCT
24456384 TCGAGCTAGT
Statistics
Matches: 157, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 76 0.48
39 79 0.50
40 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (38 bp):
TATCCGGACTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:24456218 original size:38 final size:39
Alignment explanation
Indices: 24456166--24456355 Score: 233
Period size: 38 Copynumber: 4.9 Consensus size: 39
24456156 CAGTGATGTT
* *
24456166 TATCCGGACTTAGGGTCCACATGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
*
24456205 TATCCGGAC-TAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* *
24456243 TATCCAGAC-TAGGGTCTGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
24456281 TATCTGGACTTAAGGTCCGCAGGTTATGTGCTAGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
* * * *
24456320 TAAT-TGGACTTAAGGTTCGCAGGCTACGTGCTGGAA
1 T-ATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAA
24456356 ATATGTCTGG
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
38 70 0.52
39 63 0.47
40 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
Found at i:24457547 original size:20 final size:20
Alignment explanation
Indices: 24457522--24457560 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
24457512 AATCGTAAGT
24457522 AAGAGCTCTTTAGATTTTTA
1 AAGAGCTCTTTAGATTTTTA
24457542 AAGAGCTCTTTAGATTTTT
1 AAGAGCTCTTTAGATTTTT
24457561 GTACTGGTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.46
Consensus pattern (20 bp):
AAGAGCTCTTTAGATTTTTA
Found at i:24462891 original size:53 final size:53
Alignment explanation
Indices: 24462820--24462954 Score: 130
Period size: 53 Copynumber: 2.5 Consensus size: 53
24462810 TTTTCCTTTT
* * *
24462820 TGAACTTACC-ATTGCCATGTCTTGACAGGGTCTTACATACTATCC-TTGTCTTA
1 TGAACTCACCAATT-CCATGTCTTGACAGGGTCTTACATACGA-CCTTTGCCTTA
* * * **
24462873 TGAACTCACCAATTCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTA
1 TGAACTCACCAATTCCATGTCTTGACAGGGTCTTACATACGACCTTTGCCTTA
* *
24462926 TAGTAACTCATCAATGCCATGTCTTGACA
1 T-G-AACTCACCAATTCCATGTCTTGACA
24462955 TATCTTACAT
Statistics
Matches: 66, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.03
53 39 0.59
54 4 0.06
55 21 0.32
ACGTcount: A:0.24, C:0.26, G:0.16, T:0.34
Consensus pattern (53 bp):
TGAACTCACCAATTCCATGTCTTGACAGGGTCTTACATACGACCTTTGCCTTA
Found at i:24463063 original size:47 final size:47
Alignment explanation
Indices: 24463006--24463127 Score: 190
Period size: 47 Copynumber: 2.6 Consensus size: 47
24462996 CATGCCTTGG
* * * *
24463006 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCTAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACAAAATGCCATGTTCCAAA
* *
24463053 CATGGCCTTACATGGTATCCTTGTCTTACAAAATGTCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACAAAATGCCATGTTCCAAA
24463100 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
24463128 GTGCCAATTC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACAAAATGCCATGTTCCAAA
Found at i:24463207 original size:47 final size:46
Alignment explanation
Indices: 24463142--24463265 Score: 130
Period size: 45 Copynumber: 2.7 Consensus size: 46
24463132 CAATTCCACA
* * *
24463142 TCTTGATGTGGTCTTACATGGAGTCCTTAATC-AATGCCGATGCCATG
1 TCTTGATATGGTCTTACATGGAGTCCTTAACCTAAT--CAATGCCATG
* *
24463189 TCTTGATATGGTCTTACATGG-GATCCTT-GCCTTATCAATGCCATG
1 TCTTGATATGGTCTTACATGGAG-TCCTTAACCTAATCAATGCCATG
*
24463234 TCTTGACATGGTCTTACATGGTA-TCCTTAACC
1 TCTTGATATGGTCTTACATGG-AGTCCTTAACC
24463266 GTCAATTCCT
Statistics
Matches: 65, Mismatches: 7, Indels: 11
0.78 0.08 0.13
Matches are distributed among these distances:
45 34 0.52
46 4 0.06
47 27 0.42
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (46 bp):
TCTTGATATGGTCTTACATGGAGTCCTTAACCTAATCAATGCCATG
Found at i:24463926 original size:30 final size:30
Alignment explanation
Indices: 24463886--24463946 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
24463876 TCCCTAACTC
*
24463886 AAACTTTTACAAAATTACAATTTTGCCCCT
1 AAACCTTTACAAAATTACAATTTTGCCCCT
* *
24463916 AAACCTTTACAGAATTACGATTTTGCCCCT
1 AAACCTTTACAAAATTACAATTTTGCCCCT
24463946 A
1 A
24463947 GGCTCCGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (30 bp):
AAACCTTTACAAAATTACAATTTTGCCCCT
Found at i:24467917 original size:16 final size:16
Alignment explanation
Indices: 24467898--24467928 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24467888 TCATTATTTC
*
24467898 TTTTCTTTTTCCTTTT
1 TTTTATTTTTCCTTTT
24467914 TTTTATTTTTCCTTT
1 TTTTATTTTTCCTTT
24467929 CTGGCGTCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTATTTTTCCTTTT
Found at i:24472829 original size:13 final size:13
Alignment explanation
Indices: 24472813--24472837 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24472803 TTAAATTAGT
24472813 TAATTAGTTTAAA
1 TAATTAGTTTAAA
24472826 TAATTAGTTTAA
1 TAATTAGTTTAA
24472838 TAAACAAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (13 bp):
TAATTAGTTTAAA
Found at i:24475862 original size:46 final size:46
Alignment explanation
Indices: 24475744--24475912 Score: 178
Period size: 48 Copynumber: 3.6 Consensus size: 46
24475734 TGATATGTGT
* * *
24475744 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGAGA--TAA
* * * *
24475792 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGACGA-GA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGA-GATAA
* * * *
24475838 GCTAGTGTAAGACATGTCTGGGACATGCATTAGCCTCGCGGTAGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCG-AG-AGATAA
*
24475886 GCTAGTGTAAGACCTGTCTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
24475913 GCGTCAGCTT
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 34 0.33
47 3 0.03
48 64 0.63
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGAGATAA
Found at i:24477126 original size:43 final size:43
Alignment explanation
Indices: 24477063--24477163 Score: 150
Period size: 43 Copynumber: 2.3 Consensus size: 43
24477053 TTCAATGAAC
24477063 TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
* **
24477106 TTGCACACTTAGTG-TCAATTAATTAGTTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCT-AATTAATTAACTGAAGCTATAATTGTA
*
24477149 TCACACACTTAGTGC
1 TCGCACACTTAGTGC
24477164 CACTACATTA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
42 1 0.02
43 50 0.98
ACGTcount: A:0.33, C:0.17, G:0.15, T:0.36
Consensus pattern (43 bp):
TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
Found at i:24480573 original size:39 final size:39
Alignment explanation
Indices: 24480352--24480561 Score: 298
Period size: 39 Copynumber: 5.3 Consensus size: 39
24480342 GCTCCTCGTT
* *
24480352 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
24480392 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
*
24480432 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
24480471 CAAATGCCTTCGGGCTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
*
24480510 CAAATACCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
24480549 CAAATGCCTTCGG
1 CAAATGCCTTCGG
24480562 ATCTTGTCCG
Statistics
Matches: 156, Mismatches: 12, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 108 0.69
40 46 0.29
41 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:24480606 original size:78 final size:78
Alignment explanation
Indices: 24480352--24480612 Score: 281
Period size: 78 Copynumber: 3.3 Consensus size: 78
24480342 GCTCCTCGTT
* * *
24480352 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGACTT-AGCC
24480415 GGAT-TTAGTAAC-TCGCA
61 GGATATTAGT-ACTTCGCA
* *
24480432 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGGACAAATGCCTTCGGGCTTAGCCTGGA-
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCC-GGAT
24480496 ATTAGTA-TCTCGCA
65 ATTAGTACT-TCGCA
*
24480510 CAAATACCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTT-GTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGA-CTTAG-CCGGA
*
24480574 TATT-GTCACTTAGCA
64 TATTAGT-ACTTCGCA
24480589 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
24480613 CATCATTCAA
Statistics
Matches: 159, Mismatches: 10, Indels: 26
0.82 0.05 0.13
Matches are distributed among these distances:
77 12 0.08
78 89 0.56
79 42 0.26
80 16 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGACTTAGCCGGATA
TTAGTACTTCGCA
Found at i:24484168 original size:94 final size:91
Alignment explanation
Indices: 24484003--24484268 Score: 254
Period size: 94 Copynumber: 2.8 Consensus size: 91
24483993 ATATGTGTGC
* ** ** *
24484003 TAGTGTAAGACATGTCTGGGACATGCATCAGCTTCAAGATATTTAAGCCAGTGTAAGA-CATGTC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGACCATGTC
*
24484067 T-AGGACATGCAGT-GGCATTGA-GACTAGAGT
65 TGA-GACATGC-GTCAGC-TTGACG--T-GAGT
* *
24484097 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGGTAGACATGCTAGTGTAAGACCA-GTC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGA-AAGCTAGTGTAAGACCATGTC
* *
24484161 TGAGACATGGCGTCAGCTTGTCGTGTGT
65 TGAGACAT-GCGTCAGCTTGACGTGAGT
* * *
24484189 TAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGCTATATGAAAGCTAGTGTAAGACCATGT
1 TAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGACCATGT
*
24484254 CTGGGACATGGCGTC
64 CTGAGACAT-GCGTC
24484269 GGCATCTTAA
Statistics
Matches: 146, Mismatches: 17, Indels: 18
0.81 0.09 0.10
Matches are distributed among these distances:
92 26 0.18
93 31 0.21
94 81 0.55
95 8 0.05
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (91 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGAAAGCTAGTGTAAGACCATGTCT
GAGACATGCGTCAGCTTGACGTGAGT
Found at i:24485527 original size:47 final size:47
Alignment explanation
Indices: 24485456--24486003 Score: 952
Period size: 47 Copynumber: 11.6 Consensus size: 47
24485446 CCCTTCGGGA
* * * * * *
24485456 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24485503 CCTATCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485550 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485597 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24485644 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485691 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24485738 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485787 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24485834 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485881 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485928 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485977 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
24486004 TATTCGAATA
Statistics
Matches: 479, Mismatches: 18, Indels: 8
0.95 0.04 0.02
Matches are distributed among these distances:
47 387 0.81
49 92 0.19
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24485827 original size:190 final size:190
Alignment explanation
Indices: 24485456--24486003 Score: 983
Period size: 190 Copynumber: 2.9 Consensus size: 190
24485446 CCCTTCGGGA
* * * * * * * * *
24485456 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACTTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
24485521 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
24485584 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485644 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
24485709 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
24485774 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24485834 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
24485899 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
24485964 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
24486004 TATTCGAATA
Statistics
Matches: 345, Mismatches: 13, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
188 93 0.27
190 252 0.73
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24488108 original size:40 final size:40
Alignment explanation
Indices: 24488076--24488266 Score: 276
Period size: 40 Copynumber: 4.8 Consensus size: 40
24488066 CCAGCATGAT
* * *
24488076 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
24488116 TGCT-TTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
24488155 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
24488195 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
24488235 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
24488267 CTCAATTCTC
Statistics
Matches: 134, Mismatches: 16, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
39 33 0.25
40 101 0.75
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:24489751 original size:47 final size:47
Alignment explanation
Indices: 24489680--24490274 Score: 983
Period size: 47 Copynumber: 12.6 Consensus size: 47
24489670 CCCTTCGGGA
* * * * * *
24489680 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
24489727 CCTATCACTTATATACACTTTCACATTCATCACATTGGCCGTTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24489774 CTTATCACATATATACACTTTAACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24489821 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24489868 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24489915 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24489962 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24490011 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24490058 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24490105 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTATGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24490152 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24490201 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24490248 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
24490275 TATTCAAATA
Statistics
Matches: 516, Mismatches: 28, Indels: 8
0.93 0.05 0.01
Matches are distributed among these distances:
47 428 0.83
49 88 0.17
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24490046 original size:190 final size:190
Alignment explanation
Indices: 24489680--24490274 Score: 1032
Period size: 190 Copynumber: 3.1 Consensus size: 190
24489670 CCCTTCGGGA
* * * * * * * * *
24489680 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACTTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
* * *
24489745 TTTCACATTCATCACATTGGCCGTTAGGCCTTATCAC--ATATATACACTTTAACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
* *
24489808 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24489868 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
24489933 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
24489998 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24490058 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
* *
24490123 TTTCACATTCATCACATCGGCTATTATGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
24490188 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24490248 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
24490275 TATTCAAATA
Statistics
Matches: 389, Mismatches: 16, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
188 91 0.23
190 298 0.77
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24496381 original size:40 final size:40
Alignment explanation
Indices: 24496291--24496555 Score: 340
Period size: 40 Copynumber: 6.7 Consensus size: 40
24496281 TTGAATGATG
* * * * *
24496291 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
24496331 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
24496371 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
24496410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24496450 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24496490 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
24496531 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
24496556 AACGAGGAGC
Statistics
Matches: 202, Mismatches: 18, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
39 34 0.17
40 158 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24496573 original size:120 final size:118
Alignment explanation
Indices: 24496291--24496588 Score: 325
Period size: 119 Copynumber: 2.5 Consensus size: 118
24496281 TTGAATGATG
** * * * *
24496291 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
* * * *
24496354 TTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
63 TTGTGAGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
24496410 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
24496475 GTGAGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGAGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
24496531 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
24496589 TACGTGATTT
Statistics
Matches: 152, Mismatches: 21, Indels: 12
0.82 0.11 0.06
Matches are distributed among these distances:
118 1 0.01
119 81 0.53
120 68 0.45
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGAGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:24510098 original size:76 final size:78
Alignment explanation
Indices: 24509965--24510185 Score: 299
Period size: 77 Copynumber: 2.8 Consensus size: 78
24509955 AAGTGACCAT
*
24509965 ATCCGGACTAAGAT-CCG-AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAATTCCGGGCTAAGCCCGAAGGCATT
24510028 TGTGCGA-ATACTAA
64 TGTGCGAGATACTAA
*
24510042 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTCCGGGCTAAGCCCGAAGGCATTTG
*
24510106 TGCGAGTTACTAA
66 TGCGAGATACTAA
* * * *
24510119 ATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 ATCCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
24510183 TTG
63 TTG
24510186 AACGAGGAGC
Statistics
Matches: 129, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
76 40 0.31
77 41 0.32
78 20 0.16
79 14 0.11
80 14 0.11
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
ATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAATTCCGGGCTAAGCCCGAAGGCATTTG
TGCGAGATACTAA
Found at i:24510147 original size:40 final size:39
Alignment explanation
Indices: 24509982--24510185 Score: 299
Period size: 38 Copynumber: 5.2 Consensus size: 39
24509972 CTAAGATCCG
24509982 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGA
1 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGA
24510021 AGGCATTTGTGCGA-ATACTAATTCCGGGCTAAGCCCGA
1 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGA
24510059 AGGCATTTGTGCGAG-TACTAATTCCGGGCTAAGCCCGA
1 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGA
* * *
24510097 AGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGA
1 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGA
* *
24510137 AGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGA
1 AGGCATTTGTGCGAGA-TACTAAT-TCCGGGCTAAG-CCCGA
24510177 AGGCATTTG
1 AGGCATTTG
24510186 AACGAGGAGC
Statistics
Matches: 153, Mismatches: 7, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
38 76 0.50
39 31 0.20
40 46 0.30
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGA
Found at i:24510216 original size:79 final size:78
Alignment explanation
Indices: 24509982--24510218 Score: 250
Period size: 76 Copynumber: 3.0 Consensus size: 78
24509972 CTAAGATCCG
* ** * *
24509982 AGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAAT-ACTAATTCC
1 AGGCATTTGTGCGAG-TACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCC
* *
24510046 GGGCT-AAGCCCGA
65 GGGTTAAATCCCGA
* ** *
24510059 AGGCATTTGTGCGAGTACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 AGGCATTTGTGCGAGTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCG
*
24510124 GGTTAAGTCCCGA
66 GGTTAAATCCCGA
* * *
24510137 AGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
1 AGGCATTTGTGCG-AGTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
*
24510200 TCC-GGTTAAATTCCGA
62 TCCGGGTTAAATCCCGA
24510216 AGG
1 AGG
24510219 TACGTGATTT
Statistics
Matches: 140, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
76 38 0.27
77 27 0.19
78 21 0.15
79 29 0.21
80 25 0.18
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
AGGCATTTGTGCGAGTACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCG
GGTTAAATCCCGA
Found at i:24517982 original size:40 final size:40
Alignment explanation
Indices: 24517898--24518162 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 40
24517888 TTGAATGATG
* * * * *
24517898 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
24517938 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24517978 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
24518017 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24518057 TCCGGGTTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
24518097 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
24518138 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
24518163 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 16, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
39 35 0.17
40 159 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24518180 original size:120 final size:118
Alignment explanation
Indices: 24517898--24518195 Score: 334
Period size: 119 Copynumber: 2.5 Consensus size: 118
24517888 TTGAATGATG
** * * * *
24517898 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
* * *
24517961 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
63 TTGTGAGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
24518017 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
24518082 GTGAGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGAGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
24518138 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
24518196 TACGTGATTT
Statistics
Matches: 153, Mismatches: 20, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
118 1 0.01
119 82 0.54
120 68 0.44
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGAGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:24526147 original size:54 final size:54
Alignment explanation
Indices: 24526086--24526311 Score: 294
Period size: 54 Copynumber: 4.2 Consensus size: 54
24526076 CCTAAATTGA
* *
24526086 TAAAATGACTATTTTGCCCTTATGGGGTAAAATGATTATTTTTCCCTTATCGGG
1 TAAAATGACTATTTTGCCCTTATGGGGTAAAATGATTGTTTTGCCCTTATCGGG
* * * * *
24526140 TAAAATGACTGTTTTTCTCTTATGGGGTAAAATGATTGTTTTGCCTTTATGGGG
1 TAAAATGACTATTTTGCCCTTATGGGGTAAAATGATTGTTTTGCCCTTATCGGG
* * *
24526194 TAAAATGACTATTTTGCCCTTATGTGGTAAAGTGAATGTTTTGCCCTTAT-GAGG
1 TAAAATGACTATTTTGCCCTTATGGGGTAAAATGATTGTTTTGCCCTTATCG-GG
* * * *
24526248 TAAAATGAC-AGTTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCCTTAACTGA
1 TAAAATGACTA-TTTTGCCCTTATGGGGTAAAATGATTGTTTTGCCCTTATCGGG
24526302 TAAAATGACT
1 TAAAATGACT
24526312 GTTGTACCCC
Statistics
Matches: 149, Mismatches: 19, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
53 2 0.01
54 147 0.99
ACGTcount: A:0.27, C:0.13, G:0.20, T:0.40
Consensus pattern (54 bp):
TAAAATGACTATTTTGCCCTTATGGGGTAAAATGATTGTTTTGCCCTTATCGGG
Found at i:24526223 original size:81 final size:81
Alignment explanation
Indices: 24526086--24526314 Score: 298
Period size: 81 Copynumber: 2.8 Consensus size: 81
24526076 CCTAAATTGA
* *
24526086 TAAAATGACTATTTTGCCCTTATGGGGTAAAATGATTATTTTTCCCTTATCG-GGTAAAATGACT
1 TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCTTAT-GTGGTAAAATGACT
* * *
24526150 GTTTTTCTCTTATGGGG
65 GTTTTGCCCTTATGAGG
* * * * *
24526167 TAAAATGATTGTTTTGCCTTTATGGGGTAAAATGACTATTTTGCCCTTATGTGGTAAAGTGAATG
1 TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCTTATGTGGTAAAATGACTG
24526232 TTTTGCCCTTATGAGG
66 TTTTGCCCTTATGAGG
* * * ** *
24526248 TAAAATGACAGTTTTGCCCTTATGTGGTAAAATGATTGTTTTGCCCTTAACTGATAAAATGACTG
1 TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCTTATGTGGTAAAATGACTG
24526313 TT
66 TT
24526315 GTACCCCTAT
Statistics
Matches: 126, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
80 1 0.01
81 125 0.99
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.41
Consensus pattern (81 bp):
TAAAATGACTGTTTTGCCCTTATGGGGTAAAATGATTATTTTGCCCTTATGTGGTAAAATGACTG
TTTTGCCCTTATGAGG
Found at i:24526330 original size:27 final size:27
Alignment explanation
Indices: 24526086--24526314 Score: 262
Period size: 27 Copynumber: 8.5 Consensus size: 27
24526076 CCTAAATTGA
* *
24526086 TAAAATGACTATTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
24526113 TAAAATGATTATTTTTCCCTTATCG-GG
1 TAAAATGACTGTTTTGCCCTTAT-GTGG
* * *
24526140 TAAAATGACTGTTTTTCTCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
24526167 TAAAATGATTGTTTTGCCTTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
24526194 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * *
24526221 TAAAGTGAATGTTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
24526248 TAAAATGACAGTTTTGCCCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* ** *
24526275 TAAAATGATTGTTTTGCCCTTAACTGA
1 TAAAATGACTGTTTTGCCCTTATGTGG
24526302 TAAAATGACTGTT
1 TAAAATGACTGTT
24526315 GTACCCCTAT
Statistics
Matches: 173, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 171 0.99
28 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.21, T:0.41
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:24530266 original size:43 final size:43
Alignment explanation
Indices: 24530203--24530303 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 43
24530193 TTCAACGAAC
*
24530203 TCGCACACGTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
* **
24530246 TTGCACACTTAGTG-TCAATTAATTAGTTGAAGCTATAATTGTA
1 TCGCACACTTAGTGCT-AATTAATTAACTGAAGCTATAATTGTA
*
24530289 TCACACACTTAGTGC
1 TCGCACACTTAGTGC
24530304 CATTACATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.02
43 49 0.98
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.35
Consensus pattern (43 bp):
TCGCACACTTAGTGCTAATTAATTAACTGAAGCTATAATTGTA
Found at i:24534080 original size:94 final size:92
Alignment explanation
Indices: 24533915--24534180 Score: 265
Period size: 94 Copynumber: 2.8 Consensus size: 92
24533905 ATATGTGTGC
** ** *
24533915 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCAAGATATTTAAGCCAGTGTAAGA-CATGTC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGACCATGTC
*
24533979 TAGGACAT-GCAGT-GGCATTGA-GACTAGAGT
65 TAGGACATGGC-GTCAGC-TTGACG--T-GAGT
* *
24534009 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGGTAGACATGCTAGTGTAAGACCA-GTC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGA-AAGCTAGTGTAAGACCATGTC
* *
24534073 T-GAGACATGGCGTCAGCTTGTCGTGTGT
65 TAG-GACATGGCGTCAGCTTGACGTGAGT
* * *
24534101 TAGTGTAAGACCTGTCTGGGACATGGCATCGGCCTCGCTATATGAAAGCTAGTGTAAGACCATGT
1 TAGTGTAAGACATGTCTGGGACAT-GCATCAGCCTCGCGATA-GAAAGCTAGTGTAAGACCATGT
* *
24534166 TTGGGACATGGCGTC
64 CTAGGACATGGCGTC
24534181 GTCATCTTAA
Statistics
Matches: 146, Mismatches: 16, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
92 26 0.18
93 32 0.22
94 80 0.55
95 8 0.05
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (92 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATAGAAAGCTAGTGTAAGACCATGTCT
AGGACATGGCGTCAGCTTGACGTGAGT
Found at i:24539406 original size:27 final size:27
Alignment explanation
Indices: 24539376--24539552 Score: 113
Period size: 27 Copynumber: 6.5 Consensus size: 27
24539366 ATATTGAGCC
* * * *
24539376 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCCACACAATCAAAT
**
24539403 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
24539430 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACACAAT-CAAAT
* *** *
24539458 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
24539485 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CACAATCAAAT
* * * *
24539512 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
*
24539539 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
24539553 TGTACAATTT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACACAATCAAAT
Found at i:24539468 original size:55 final size:55
Alignment explanation
Indices: 24539376--24539552 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
24539366 ATATTGAGCC
* * * * *
24539376 CGCACACTCAGTGCTATACA-AT-CAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
24539430 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
24539485 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
24539539 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
24539553 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.55
55 43 0.42
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:24539515 original size:82 final size:81
Alignment explanation
Indices: 24539397--24539552 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
24539387 TGCTATACAA
* * * **
24539397 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCA
24539462 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24539479 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
24539543 CCCTTAGTGC
65 CACTTAGTGC
24539553 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24547470 original size:27 final size:27
Alignment explanation
Indices: 24547440--24547616 Score: 113
Period size: 27 Copynumber: 6.5 Consensus size: 27
24547430 ATATTGAGCC
* * * *
24547440 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCCACACAATCAAAT
**
24547467 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
24547494 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACACAAT-CAAAT
* *** *
24547522 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
24547549 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CACAATCAAAT
* * * *
24547576 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
*
24547603 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
24547617 TGTACAATTT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACACAATCAAAT
Found at i:24547532 original size:55 final size:55
Alignment explanation
Indices: 24547440--24547616 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
24547430 ATATTGAGCC
* * * * *
24547440 CGCACACTCAGTGCTATACA-AT-CAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
24547494 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
24547549 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
24547603 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
24547617 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.55
55 43 0.42
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:24547579 original size:82 final size:81
Alignment explanation
Indices: 24547461--24547616 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
24547451 TGCTATACAA
* * * **
24547461 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCA
24547526 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24547543 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
24547607 CCCTTAGTGC
65 CACTTAGTGC
24547617 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24551248 original size:6 final size:6
Alignment explanation
Indices: 24551237--24551261 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
24551227 AAGTTCATAA
24551237 TTAACT TTAACT TTAACT TTAACT T
1 TTAACT TTAACT TTAACT TTAACT T
24551262 ACCATAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAACT
Found at i:24551617 original size:13 final size:13
Alignment explanation
Indices: 24551599--24551641 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
24551589 TTGTATAATT
24551599 ATTTCATTTAAAC
1 ATTTCATTTAAAC
*
24551612 ATTTCATCTT-ACC
1 ATTTCAT-TTAAAC
*
24551625 ATTTCATTTACAC
1 ATTTCATTTAAAC
24551638 ATTT
1 ATTT
24551642 AACACATAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
12 2 0.08
13 21 0.84
14 2 0.08
ACGTcount: A:0.30, C:0.21, G:0.00, T:0.49
Consensus pattern (13 bp):
ATTTCATTTAAAC
Found at i:24554588 original size:46 final size:46
Alignment explanation
Indices: 24554513--24554687 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
24554503 TGTAACCCTC
* *
24554513 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
*
24554559 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCACAT
* * * * *
24554609 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
* * *
24554652 CCATAAGTGAACTCAGACTCAAATCAACGCGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
24554688 ATGCCCAAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.54
47 28 0.26
48 3 0.03
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCACAT
Found at i:24554679 original size:93 final size:93
Alignment explanation
Indices: 24554520--24554692 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
24554510 CTCCCATAAG
* * * * *
24554520 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAAATCA
24554585 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
24554613 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCAGACTCAAATCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAAATCA
*
24554678 ACGCGTTCGGATGCC
66 ACGAGTTCGGATGCC
24554693 CAAATATCCT
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCAGACTCAAATCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:24558921 original size:14 final size:15
Alignment explanation
Indices: 24558890--24558922 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
24558880 TATTTACTAA
24558890 TTTTCTTATAGAATT
1 TTTTCTTATAGAATT
24558905 TTTTCTTATAGAATT
1 TTTTCTTATAGAATT
24558920 TTT
1 TTT
24558923 GGTCTAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (15 bp):
TTTTCTTATAGAATT
Found at i:24560061 original size:46 final size:46
Alignment explanation
Indices: 24559986--24560160 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
24559976 TGTAACCCGC
* *
24559986 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
* *
24560032 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * * *
24560082 -C-TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
24560125 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
24560161 TTGCCCAAAT
Statistics
Matches: 107, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 60 0.56
47 27 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:24560152 original size:93 final size:93
Alignment explanation
Indices: 24559993--24560165 Score: 292
Period size: 93 Copynumber: 1.9 Consensus size: 93
24559983 CGCCCATAAG
* * * *
24559993 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATGAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
24560058 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
24560086 CGAACTCGGACTCAACTCAACAAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
24560151 ACGAGTTCGGTTGCC
66 ACGAGTTCGGATGCC
24560166 CAAATATCCT
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:24560180 original size:46 final size:45
Alignment explanation
Indices: 24559989--24560180 Score: 108
Period size: 46 Copynumber: 4.2 Consensus size: 45
24559979 AACCCGCCCA
* * ** ** **
24559989 TAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGTTGCCCATATCC
* * *
24560034 ATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGT-TACATC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGTTGCCCA-TAT-C--C
* * * *
24560083 TCA-CGAACTCGGACTCAACTCAACAAGTTCGGACATT-CGC--ATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG---TTGCCCATATCC
24560127 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGTTGCCCAAATATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGTTGCCC--ATATCC
24560175 T-AGTGA
1 TAAGTGA
24560181 CATGTCACTT
Statistics
Matches: 111, Mismatches: 20, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
43 2 0.02
44 3 0.03
45 2 0.02
46 65 0.59
47 30 0.27
48 6 0.05
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (45 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGTTGCCCATATCC
Found at i:24561687 original size:32 final size:32
Alignment explanation
Indices: 24561647--24561709 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
24561637 CATCTATGTG
24561647 ACTTGATTGATATGAAGATTTTGGTGACTAAA
1 ACTTGATTGATATGAAGATTTTGGTGACTAAA
24561679 ACTTGATTGATATGAAGATTTTGGTGACTAA
1 ACTTGATTGATATGAAGATTTTGGTGACTAA
24561710 CATGTTTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.38
Consensus pattern (32 bp):
ACTTGATTGATATGAAGATTTTGGTGACTAAA
Found at i:24570037 original size:48 final size:48
Alignment explanation
Indices: 24569957--24570479 Score: 562
Period size: 48 Copynumber: 10.9 Consensus size: 48
24569947 ACTAAGGTAG
* *
24569957 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * * * **
24570005 TGTGAGCCAGTATAAGACCATGTTTGGAACATGGCATCAACATTTATA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * *
24570053 TGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAACCTCGATA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * * ** *
24570101 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTACA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * *
24570149 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCAGCCTCGATA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * ** **
24570197 TGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTATTTATA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * *
24570245 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAAA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * * * * ** * **
24570293 TGTGATCCAATGTAAGACCATGTTTGGAACATAGCATTGGCATTTATA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * *
24570341 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
* * *
24570389 TGTGAGCCAGTGTAAGACCATGTTTGGAACATAGCATCAGCAC-CGATATA
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGC-CTCG--ATA
*
24570439 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGC
24570480 ATCTTACCCT
Statistics
Matches: 381, Mismatches: 91, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
48 341 0.90
49 1 0.00
50 39 0.10
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (48 bp):
TGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCCTCGATA
Found at i:24570121 original size:96 final size:96
Alignment explanation
Indices: 24569957--24570479 Score: 839
Period size: 96 Copynumber: 5.4 Consensus size: 96
24569947 ACTAAGGTAG
*
24569957 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTATAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
**
24570022 CCATGTTTGGAACATGGCATCAACATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* *
24570053 TGAGAGCTAGTGTAAGACCATGTCTGGGACATAGCATCAACCTCGATATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
*
24570118 CCATGTTTGGAACATGGCATCGGCATTTACA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
*
24570149 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGCCATCAGCCTCGATATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
*
24570214 CCATGTTTGGAACATGGCATCGGTATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
* * * * *
24570245 TGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGAAATGTGATCCAATGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
* *
24570310 CCATGTTTGGAACATAGCATTGGCATTTATA
66 CCATGTTTGGAACATGGCATCGGCATTTATA
*
24570341 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGACATGTGAGCCAGTGTAAGA
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
* * **
24570406 CCATGTTTGGAACATAGCATCAGCACCGATATA
66 CCATGTTTGGAACATGGCATCGGCA--TTTATA
*
24570439 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC
1 TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGC
24570480 ATCTTACCCT
Statistics
Matches: 395, Mismatches: 30, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
96 351 0.89
98 44 0.11
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (96 bp):
TGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGATATGTGAGCCAGTGTAAGA
CCATGTTTGGAACATGGCATCGGCATTTATA
Found at i:24570956 original size:10 final size:9
Alignment explanation
Indices: 24570928--24570953 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
24570918 ATTCATTTAT
24570928 TTTTAGTTA
1 TTTTAGTTA
24570937 TTTTAGTTA
1 TTTTAGTTA
24570946 TTTTAGTT
1 TTTTAGTT
24570954 TATGTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:24571054 original size:50 final size:53
Alignment explanation
Indices: 24570991--24571107 Score: 172
Period size: 50 Copynumber: 2.3 Consensus size: 53
24570981 TAATAAAGTT
*
24570991 ATGCATTATGTAACT-CTCATGTAAGTT-AAGTTTGCATCA-TAAATTATG-AC
1 ATGCATTATGTAACTCCT-ATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
24571041 ATGCATTATGTAACTCCTATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
1 ATGCATTATGTAACTCCTATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
*
24571094 -TGCATTAAGTAACT
1 ATGCATTATGTAACT
24571108 TATTTGTTCA
Statistics
Matches: 61, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
50 24 0.39
51 14 0.23
52 21 0.34
53 2 0.03
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (53 bp):
ATGCATTATGTAACTCCTATGTAAGTTAAAGTTTGCATCATTAAATTAAGTAC
Found at i:24573592 original size:6 final size:6
Alignment explanation
Indices: 24573583--24573641 Score: 57
Period size: 6 Copynumber: 9.3 Consensus size: 6
24573573 AAAAGCATGT
* *
24573583 GAAAAA GAAAAA GAAATA GAAAAA GAAAAAA GGAATGAAA G-AAAA CAAAAA
1 GAAAAA GAAAAA GAAAAA GAAAAA G-AAAAA -GAA--AAA GAAAAA GAAAAA
24573634 GAAAAA GA
1 GAAAAA GA
24573642 GAATGAAAGA
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.07
6 28 0.64
7 8 0.18
8 2 0.05
9 3 0.07
ACGTcount: A:0.76, C:0.02, G:0.19, T:0.03
Consensus pattern (6 bp):
GAAAAA
Found at i:24573639 original size:27 final size:28
Alignment explanation
Indices: 24573592--24573662 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
24573582 TGAAAAAGAA
*
24573592 AAAGAAATAGAAAAAGAAAAAAG-GAATG
1 AAAGAAA-ACAAAAAGAAAAAAGAGAATG
24573620 AAAGAAAACAAAAAG-AAAAAGAGAATG
1 AAAGAAAACAAAAAGAAAAAAGAGAATG
*
24573647 AAAGAGAACAAAAAGA
1 AAAGAAAACAAAAAGA
24573663 GATTGAGAGC
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 6 0.15
27 26 0.67
28 7 0.18
ACGTcount: A:0.73, C:0.03, G:0.20, T:0.04
Consensus pattern (28 bp):
AAAGAAAACAAAAAGAAAAAAGAGAATG
Found at i:24573680 original size:21 final size:21
Alignment explanation
Indices: 24573635--24573680 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
24573625 AAACAAAAAG
*
24573635 AAAAAGAGAATGAAAGAGAAC
1 AAAAAGAGAATGAAAGAGAAA
* * *
24573656 AAAAAGAGATTGAGAGCGAAA
1 AAAAAGAGAATGAAAGAGAAA
24573677 AAAA
1 AAAA
24573681 TGTGAGAAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.65, C:0.04, G:0.24, T:0.07
Consensus pattern (21 bp):
AAAAAGAGAATGAAAGAGAAA
Found at i:24574004 original size:13 final size:13
Alignment explanation
Indices: 24573986--24574012 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
24573976 AAGCAAGGTA
24573986 AGGGTTTCATGTT
1 AGGGTTTCATGTT
24573999 AGGGTTTCATGTT
1 AGGGTTTCATGTT
24574012 A
1 A
24574013 TCTGAGTCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.07, G:0.30, T:0.44
Consensus pattern (13 bp):
AGGGTTTCATGTT
Found at i:24575440 original size:52 final size:51
Alignment explanation
Indices: 24575311--24575442 Score: 176
Period size: 50 Copynumber: 2.6 Consensus size: 51
24575301 ATGTGTTCTG
* * *
24575311 CATTTAATAAAGTCATGCATTATGTAACTCTCATATAAGTTAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATATAAGTTAAGTTTGCAT
* * * *
24575362 CA-TAAATTATGACATGCATTATGTAACTCCCATGTTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTCATGCATTATGTAACTCCCATATAAGTT-AAGTTTGCAT
*
24575413 CATTAAATTAAGTCATGCATTAAGTAACTC
1 CATTAAATTAAGTCATGCATTATGTAACTC
24575443 ATTTGTTCAT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
50 31 0.45
51 14 0.20
52 24 0.35
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (51 bp):
CATTAAATTAAGTCATGCATTATGTAACTCCCATATAAGTTAAGTTTGCAT
Found at i:24576084 original size:12 final size:12
Alignment explanation
Indices: 24576067--24576095 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
24576057 AAAGGTCACA
24576067 AATAGGCATTTG
1 AATAGGCATTTG
24576079 AATAGGCATTTG
1 AATAGGCATTTG
24576091 AATAG
1 AATAG
24576096 TCATAATAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (12 bp):
AATAGGCATTTG
Found at i:24577603 original size:21 final size:20
Alignment explanation
Indices: 24577579--24577617 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
24577569 GTTAAGAGGA
24577579 CACACGAGCATGTCGCCCTTC
1 CACACGAGCATGT-GCCCTTC
* *
24577600 CACATGAGCGTGTGCCCT
1 CACACGAGCATGTGCCCT
24577618 CGGTTGCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.18, C:0.38, G:0.23, T:0.21
Consensus pattern (20 bp):
CACACGAGCATGTGCCCTTC
Found at i:24579746 original size:50 final size:50
Alignment explanation
Indices: 24579681--24579974 Score: 297
Period size: 50 Copynumber: 5.8 Consensus size: 50
24579671 ACCGAAGCTC
* * * * * *
24579681 TCTGGTACGCATAGTAGCCTGCACTTAGTTCTACACATGCGACCCAACAA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* * *
24579731 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
* * * * *
24579781 T-TGGATACACGTAGTAGCCTACACTTACTACTACACACGTGATCAAAGCTA
1 TCTGG-TACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAA-CAA
* * * *
24579832 TCGGGTACGCATAGTAGCCTACACTTAGTA-TAACACATGCGACCTAACAA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACT-ACACATGTGACCTAACAA
*
24579882 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTGA-AA
1 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
** * * *
24579931 TCGTCTTAAACACATAGTAGCCTGCACATAGTACTACACATGTG
1 TC-TGGT--ACACGTAGTAGCCTACACTTAGTACTACACATGTG
24579975 TTCTCACAAC
Statistics
Matches: 205, Mismatches: 31, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
49 7 0.03
50 127 0.62
51 37 0.18
52 34 0.17
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
TCTGGTACACGTAGTAGCCTACACTTAGTACTACACATGTGACCTAACAA
Found at i:24579868 original size:101 final size:101
Alignment explanation
Indices: 24579742--24579923 Score: 278
Period size: 101 Copynumber: 1.8 Consensus size: 101
24579732 CTGGTACACG
* * *
24579742 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCAT-TGGATACACGTAGTAGCCTACACT
1 TAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGG-TACACGTAGTAGCCTACACT
24579806 TACTACTACACACGTGATCAAAGCTATCGGGTACGCA
65 TACTACTACACACGTGATCAAAGCTATCGGGTACGCA
*
24579843 TAGTAGCCTACACTTAGTA-TAACACATGCGACCTAACAATCTGGTACACGTAGTAGCCTACACT
1 TAGTAGCCTACACTTAGTACT-ACACACGCGACCTAACAATCTGGTACACGTAGTAGCCTACACT
* *
24579907 TAGTACTACACATGTGA
65 TACTACTACACACGTGA
24579924 CCTGAAATCG
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
100 1 0.01
101 69 0.95
102 3 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTACACTTAGTACTACACACGCGACCTAACAATCTGGTACACGTAGTAGCCTACACTT
ACTACTACACACGTGATCAAAGCTATCGGGTACGCA
Found at i:24586829 original size:50 final size:50
Alignment explanation
Indices: 24586735--24587022 Score: 242
Period size: 50 Copynumber: 5.7 Consensus size: 50
24586725 ACCAAAGCTC
* * * **
24586735 TCTGGTACACATA-TAGCCTGCACTTAGTATTAAACAAGCAACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * * *
24586784 TCTTGTACACGTAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
* * ** * * * * * *
24586834 TCAGATACATGTAGTAGCCTACGCTTACTACTACACACGTGATCGAAGCTA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CAA
** * *
24586885 TC-GGATATGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAA
1 TCTGG-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
*
24586935 TCTGGTACACGA-ATTAGCCTGCACTTAGTACTACACACGTGACCTAA-AA
1 TCTGGTACAC-ATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
** * *
24586984 TCGTCTTAAACACATAGTAGCCTACACATAGTACTACAC
1 TC-TGGT--ACACATAGTAGCCTGCACTTAGTACTACAC
24587023 GTGTTCTCAC
Statistics
Matches: 188, Mismatches: 42, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
49 15 0.08
50 109 0.58
51 39 0.21
52 25 0.13
ACGTcount: A:0.33, C:0.26, G:0.15, T:0.25
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACAA
Found at i:24586970 original size:101 final size:101
Alignment explanation
Indices: 24586795--24586976 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
24586785 CTTGTACACG
* * * * *
24586795 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCAGATACATGTAGTAGCCTACGCTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCAGATACACGAAGTAGCCTACACTT
24586860 ACTACTACACACGTGATCGAAGCTATCGGATATGCA
66 ACTACTACACACGTGATCGAAGCTATCGGATATGCA
* * * *
24586896 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGAATTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCAGATACACGAAGTAGCCTACACTT
*
24586961 AGTACTACACACGTGA
66 ACTACTACACACGTGA
24586977 CCTAAAATCG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCAGATACACGAAGTAGCCTACACTT
ACTACTACACACGTGATCGAAGCTATCGGATATGCA
Found at i:24587023 original size:151 final size:149
Alignment explanation
Indices: 24586744--24587025 Score: 359
Period size: 151 Copynumber: 1.9 Consensus size: 149
24586734 CTCTGGTACA
* * *
24586744 CATATAGCCTGCACTTAGTATTAAACAAGCAACCTAACAATCTTGTACACGTAGTAGCCTGCACT
1 CATATAGCCTGCACTTAGTACTAAACAAGCAACCTAACAATCTGGTACACGAAGTAGCCTGCACT
* * ** * *
24586809 TAGTACTACACATGTGACCTAACCATCAGATACATGTAGTAGCCTACGCTTACTACTACACACGT
66 TAGTACTACACACGTGACCTAACCATCAGAAACACATAGTAGCCTACACATACTACTA-ACACGT
24586874 GATCGAAGCTATCGGATATG
130 GATCGAAGCTATCGGATATG
* * * *
24586894 CATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACAATCTGGTACACGAATTAGCCTGCAC
1 CATA-TAGCCTGCACTTAGTACTAAACAAGCAACCTAACAATCTGGTACACGAAGTAGCCTGCAC
* * ** *
24586959 TTAGTACTACACACGTGACCTAAAATCGTCTTAAACACATAGTAGCCTACACATAGTACT-ACAC
65 TTAGTACTACACACGTGACCT--AACCATCAGAAACACATAGTAGCCTACACATACTACTAACAC
24587023 GTG
128 GTG
24587026 TTCTCACAAC
Statistics
Matches: 111, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
150 4 0.04
151 80 0.72
153 27 0.24
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (149 bp):
CATATAGCCTGCACTTAGTACTAAACAAGCAACCTAACAATCTGGTACACGAAGTAGCCTGCACT
TAGTACTACACACGTGACCTAACCATCAGAAACACATAGTAGCCTACACATACTACTAACACGTG
ATCGAAGCTATCGGATATG
Found at i:24589961 original size:27 final size:25
Alignment explanation
Indices: 24589900--24589994 Score: 79
Period size: 26 Copynumber: 3.7 Consensus size: 25
24589890 CATAAATGTG
24589900 CCACAAAGGCTTTCATTTT-ATATTT
1 CCACAAAGGCTTTC-TTTTCATATTT
* *
24589925 CCACAGAGGCTTTCTTTTCATGGTTT
1 CCACAAAGGCTTTCTTTTCAT-ATTT
*
24589951 GGCACAAAGGCTTT-TTTTCAT-TTT
1 -CCACAAAGGCTTTCTTTTCATATTT
*
24589975 AAACCACAAATGCTTTCTTT
1 ---CCACAAAGGCTTTCTTT
24589995 ATCTGTTGTG
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
24 7 0.12
25 15 0.26
26 21 0.37
27 14 0.25
ACGTcount: A:0.24, C:0.21, G:0.13, T:0.42
Consensus pattern (25 bp):
CCACAAAGGCTTTCTTTTCATATTT
Found at i:24595356 original size:41 final size:41
Alignment explanation
Indices: 24595299--24595380 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
24595289 TTCTTGTATG
24595299 ACTTTAGATTTTTGGCAAGTCCAGTGAGAATCATTTTCATT
1 ACTTTAGATTTTTGGCAAGTCCAGTGAGAATCATTTTCATT
24595340 ACTTTAGATTTTTGGCAAGTCCAGTGAGAATCATTTTCATT
1 ACTTTAGATTTTTGGCAAGTCCAGTGAGAATCATTTTCATT
24595381 CTGCAAACAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.17, T:0.41
Consensus pattern (41 bp):
ACTTTAGATTTTTGGCAAGTCCAGTGAGAATCATTTTCATT
Found at i:24599065 original size:24 final size:24
Alignment explanation
Indices: 24599020--24599065 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
24599010 TACTAATAGT
* * *
24599020 TTAAATATTGAATTATATTTTATA
1 TTAAATATTAAATTAAAATTTATA
24599044 TTAAATATTAAATTAAAATTTA
1 TTAAATATTAAATTAAAATTTA
24599066 ATTGTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
TTAAATATTAAATTAAAATTTATA
Found at i:24603900 original size:33 final size:34
Alignment explanation
Indices: 24603858--24603921 Score: 103
Period size: 33 Copynumber: 1.9 Consensus size: 34
24603848 GCATGTTGTA
* *
24603858 ACAGTCTGGGCTTGAGCCCTATTCAG-AATCAGT
1 ACAGTCTGGGCCTGAGCCCTATACAGTAATCAGT
24603891 ACAGTCTGGGCCTGAGCCCTATACAGTAATC
1 ACAGTCTGGGCCTGAGCCCTATACAGTAATC
24603922 GTGTGGCCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 24 0.86
34 4 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (34 bp):
ACAGTCTGGGCCTGAGCCCTATACAGTAATCAGT
Found at i:24603917 original size:27 final size:29
Alignment explanation
Indices: 24603887--24603950 Score: 73
Period size: 27 Copynumber: 2.3 Consensus size: 29
24603877 TATTCAGAAT
* *
24603887 CAGTACAGTC-TG-GGCCTGAGCCCTATA
1 CAGTACAGTCGTGTGGCCTAAGCCCAATA
24603914 CAGTA-A-TCGTGTGGCCTAAGCCCAATA
1 CAGTACAGTCGTGTGGCCTAAGCCCAATA
24603941 CAGTATCAGT
1 CAGTA-CAGT
24603951 ACAGTGTAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
25 2 0.07
26 3 0.10
27 23 0.77
29 1 0.03
30 1 0.03
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (29 bp):
CAGTACAGTCGTGTGGCCTAAGCCCAATA
Found at i:24604140 original size:27 final size:27
Alignment explanation
Indices: 24604110--24604187 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
24604100 GCTAGAAATT
* *
24604110 GTAAATGTGGCAAAGCCACCAGTATCA
1 GTAAATGTGGCATAGCCACCAGTAACA
*
24604137 GTAATTGTGGCATAGCCACCAGTAACA
1 GTAAATGTGGCATAGCCACCAGTAACA
* * *
24604164 GTGAATGTGACATAGTCACCAGTA
1 GTAAATGTGGCATAGCCACCAGTA
24604188 CTTCCTCCAT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.22
Consensus pattern (27 bp):
GTAAATGTGGCATAGCCACCAGTAACA
Found at i:24604354 original size:27 final size:27
Alignment explanation
Indices: 24604324--24604486 Score: 143
Period size: 27 Copynumber: 6.1 Consensus size: 27
24604314 GGCATAATCA
* *
24604324 TCATTTTACCATACAAGGGTATTACGG
1 TCATTTTACCCTACAAGGGCATTACGG
* * * *
24604351 TCATTTTACCTTACAGGGGTATTA-TG
1 TCATTTTACCCTACAAGGGCATTACGG
* *** * *
24604377 -AATTTTACCCTTTTAGGGTATTACAG
1 TCATTTTACCCTACAAGGGCATTACGG
*
24604403 TCATTTTACCCTACAGGGGCATTACGG
1 TCATTTTACCCTACAAGGGCATTACGG
* * * *
24604430 TCATTTAACCCTATAGGGGCATTACGC
1 TCATTTTACCCTACAAGGGCATTACGG
24604457 TCATTTTACCCTA-AAGGGGCATTACGG
1 TCATTTTACCCTACAA-GGGCATTACGG
24604484 TCA
1 TCA
24604487 AATAACGACC
Statistics
Matches: 110, Mismatches: 23, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
25 17 0.15
26 3 0.03
27 90 0.82
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (27 bp):
TCATTTTACCCTACAAGGGCATTACGG
Found at i:24604464 original size:54 final size:53
Alignment explanation
Indices: 24604339--24604486 Score: 158
Period size: 54 Copynumber: 2.8 Consensus size: 53
24604329 TTACCATACA
* * * * * * *
24604339 AGGGTATTACGGTCATTTTACCTTACAGGGGTATTA-TG-AATTTTACCCTTTT
1 AGGGCATTAC-GTCATTTTACCCTACAGGGGCATTACGGTCATTTAACCCTTAT
*
24604391 AGGGTATTACAGTCATTTTACCCTACAGGGGCATTACGGTCATTTAACCC-TAT
1 AGGGCATTAC-GTCATTTTACCCTACAGGGGCATTACGGTCATTTAACCCTTAT
*
24604444 AGGGGCATTACGCTCATTTTACCCTAAAGGGGCATTACGGTCA
1 A-GGGCATTACG-TCATTTTACCCTACAGGGGCATTACGGTCA
24604487 AATAACGACC
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
52 33 0.40
53 5 0.06
54 45 0.54
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (53 bp):
AGGGCATTACGTCATTTTACCCTACAGGGGCATTACGGTCATTTAACCCTTAT
Found at i:24604962 original size:8 final size:8
Alignment explanation
Indices: 24604949--24604975 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
24604939 AAACACCGTA
24604949 TTTCGGCT
1 TTTCGGCT
24604957 TTTCGGCT
1 TTTCGGCT
24604965 TTTCGGCT
1 TTTCGGCT
24604973 TTT
1 TTT
24604976 GTTGATTCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.00, C:0.22, G:0.22, T:0.56
Consensus pattern (8 bp):
TTTCGGCT
Found at i:24614926 original size:43 final size:43
Alignment explanation
Indices: 24614878--24614985 Score: 139
Period size: 43 Copynumber: 2.5 Consensus size: 43
24614868 GATTAACGAG
* *
24614878 ATGTGATTATGTGTAAGACTATGTCTGGGACATTGACATCATT
1 ATGTGATTATGTGTAAGACCATGTCTAGGACATTGACATCATT
* *
24614921 ATGTGATTATGTGTAAGACCATGTCTAGGACATTGGCATCGTT
1 ATGTGATTATGTGTAAGACCATGTCTAGGACATTGACATCATT
*
24614964 AAT-TAATT-TCGTGTAAGACCAT
1 -ATGTGATTAT-GTGTAAGACCAT
24614986 AACTGGGCTA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
42 1 0.02
43 55 0.95
44 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (43 bp):
ATGTGATTATGTGTAAGACCATGTCTAGGACATTGACATCATT
Found at i:24618714 original size:27 final size:27
Alignment explanation
Indices: 24618684--24618861 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
24618674 ATATTGAGTC
* * *
24618684 CGCACACTCAGTTCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
24618711 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
24618738 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
24618766 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
24618793 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
24618820 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
24618847 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24618862 GTACAATTTA
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24618825 original size:82 final size:81
Alignment explanation
Indices: 24618705--24618860 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
24618695 TTCTATATAA
* *
24618705 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
24618770 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
24618787 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
24618851 CACTTAGTGC
65 CACTTAGTGC
24618861 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:24621087 original size:43 final size:43
Alignment explanation
Indices: 24620999--24621138 Score: 135
Period size: 43 Copynumber: 3.3 Consensus size: 43
24620989 TGTGATTATG
* * *
24620999 TGTAAGACCATGTCTGGGACATTGGCTTCATTATGTGATTACA
1 TGTAAGACCATATCTGGGACATTGGCATCATTATGTAATTACA
* *
24621042 TGTAAGACCATATTTGGGACATTGGCAT-AGTTAAT-TAATTTCA
1 TGTAAGACCATATCTGGGACATTGGCATCA-TT-ATGTAATTACA
* * * *
24621085 TGTGAGACCATAGCTGGG-CTATTGGCATCGA-TATGTGATAACA
1 TGTAAGACCATATCTGGGAC-ATTGGCATC-ATTATGTAATTACA
24621128 TGTAAGACCAT
1 TGTAAGACCAT
24621139 GTCTTGGATA
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
42 4 0.05
43 72 0.91
44 2 0.03
45 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACATTGGCATCATTATGTAATTACA
Found at i:24622733 original size:34 final size:32
Alignment explanation
Indices: 24622690--24622780 Score: 101
Period size: 34 Copynumber: 2.8 Consensus size: 32
24622680 TTAGGGCCTT
* *
24622690 AGCCCATTTCAGTAACAGTAGCAGTCTGGGACTG
1 AGCCCATTTCAGTAACAGTA-CAGT-GGGGACTA
* *
24622724 AGCCCATTTCAATAACAGTATCAGTGGGGCCTA
1 AGCCCATTTCAGTAACAGTA-CAGTGGGGACTA
* *
24622757 AGCCCATTACAGTATCAGTACAGT
1 AGCCCATTTCAGTAACAGTACAGT
24622781 TGCAATTAGA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
32 4 0.08
33 22 0.45
34 23 0.47
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (32 bp):
AGCCCATTTCAGTAACAGTACAGTGGGGACTA
Found at i:24630330 original size:43 final size:43
Alignment explanation
Indices: 24630283--24630390 Score: 155
Period size: 43 Copynumber: 2.5 Consensus size: 43
24630273 TAGCCCAACT
* *
24630283 ATGGTCTTACACAAAATTA-ATTAACGATGCCAATGTCCCATAC
1 ATGGTCTTACACAAAATCACA-TAACGATGCCAATGTCCCAGAC
* *
24630326 ATGGTCTTACACATAATCACATAATGATGCCAATGTCCCAGAC
1 ATGGTCTTACACAAAATCACATAACGATGCCAATGTCCCAGAC
*
24630369 ATGGTCTTACACATAATCACAT
1 ATGGTCTTACACAAAATCACAT
24630391 CTCATTAATC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
43 59 0.98
44 1 0.02
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACAAAATCACATAACGATGCCAATGTCCCAGAC
Found at i:24630377 original size:86 final size:85
Alignment explanation
Indices: 24630224--24630381 Score: 196
Period size: 86 Copynumber: 1.8 Consensus size: 85
24630214 AGCTTGTATA
** * *
24630224 ATGCCATATCCCATACATGGTCTTACATGTTATCACATATCGATAACGATAGCCCAACTATGGTC
1 ATGCCATATCCCATACATGGTCTTACACATAATCACATATCGATAACAATAGCCCAACTATGGTC
24630289 TTACACAAAATTAATTAACG
66 TTACACAAAATTAATTAACG
* **
24630309 ATGCCAATGTCCCATACATGGTCTTACACATAATCACATAAT-GATGCCAAT-GTCCCAGAC-AT
1 ATGCC-ATATCCCATACATGGTCTTACACATAATCACAT-ATCGATAACAATAG-CCCA-ACTAT
24630371 GGTCTTACACA
62 GGTCTTACACA
24630382 TAATCACATC
Statistics
Matches: 62, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 6 0.10
86 52 0.84
87 4 0.06
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (85 bp):
ATGCCATATCCCATACATGGTCTTACACATAATCACATATCGATAACAATAGCCCAACTATGGTC
TTACACAAAATTAATTAACG
Found at i:24632122 original size:53 final size:53
Alignment explanation
Indices: 24631939--24632140 Score: 217
Period size: 53 Copynumber: 3.8 Consensus size: 53
24631929 GACGTTGAAT
* * * *
24631939 GACCATACCATGTAAGACCGTAACTTGTGGGTTA-TGACATCATATGGAAGGAA
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATTG-CATCATATGGAAAGAA
* * * * *
24631992 GCCCATATCATGTAATACCGTAATTGGTGGGTTATTACATCATATGGAAAGAA
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATTGCATCATATGGAAAGAA
* * * *
24632045 GACCATATTGTGTAAGAACATAACTGGTGGGTTATTGCATCATATGAAAAGAA
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATTGCATCATATGGAAAGAA
* ** * * *
24632098 GACCATGTCGTGTAAGATTGTAACTAGTGGATTATGGCATCAT
1 GACCATATCGTGTAAGACCGTAACTGGTGGGTTATTGCATCAT
24632141 GTGGGAAAAA
Statistics
Matches: 124, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
53 123 0.99
54 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.29
Consensus pattern (53 bp):
GACCATATCGTGTAAGACCGTAACTGGTGGGTTATTGCATCATATGGAAAGAA
Found at i:24632330 original size:29 final size:28
Alignment explanation
Indices: 24632298--24632393 Score: 97
Period size: 29 Copynumber: 3.4 Consensus size: 28
24632288 TTTAATGACA
*
24632298 CCTTTGTGGCAAAACTTTGGAAAGGTAAG
1 CCTTTGTGGCAAAACTAT-GAAAGGTAAG
*
24632327 CCTTTGTGG-AAAAGCTATGAAAGGCCAA-
1 CCTTTGTGGCAAAA-CTATGAAAGG-TAAG
* * *
24632355 ACTTTGTGCCAAAACTCTAGAAAGGTAAG
1 CCTTTGTGGCAAAACTAT-GAAAGGTAAG
24632384 CCTTTGTGGC
1 CCTTTGTGGC
24632394 GAACTTTTTA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
28 22 0.41
29 32 0.59
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (28 bp):
CCTTTGTGGCAAAACTATGAAAGGTAAG
Found at i:24632455 original size:27 final size:27
Alignment explanation
Indices: 24632298--24632475 Score: 83
Period size: 28 Copynumber: 6.3 Consensus size: 27
24632288 TTTAATGACA
* * *
24632298 CCTTTGTGGCAAAACTTTGGAAAGGTAAG
1 CCTTTGTGGC-AAACTCT-AAAAGGAAAG
* * *
24632327 CCTTTGTGGAAAAGCTATGAAAGGCCAAA-
1 CCTTTGTGGCAAA-CTCTAAAAGG--AAAG
* *
24632356 -CTTTGTGCCAAAACTCTAGAAAGGTAAG
1 CCTTTGTGGC-AAACTCTA-AAAGGAAAG
* * * *
24632384 CCTTTGTGGCGAACTTTTTAAA-GAACG
1 CCTTTGTGGCAAAC-TCTAAAAGGAAAG
* *
24632411 CCTTTATGGAAAATCTCTAAAAGGAAAG
1 CCTTTGTGGCAAA-CTCTAAAAGGAAAG
* ** *
24632439 CCTCTGTGGCAAACTCTAGGCAGGAAAA
1 CCTTTGTGGCAAACTCTA-AAAGGAAAG
24632467 CCTTTGTGG
1 CCTTTGTGG
24632476 TAATATCCAT
Statistics
Matches: 111, Mismatches: 27, Indels: 23
0.69 0.17 0.14
Matches are distributed among these distances:
27 25 0.23
28 54 0.49
29 30 0.27
30 2 0.02
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (27 bp):
CCTTTGTGGCAAACTCTAAAAGGAAAG
Found at i:24632752 original size:23 final size:23
Alignment explanation
Indices: 24632725--24632798 Score: 66
Period size: 19 Copynumber: 3.3 Consensus size: 23
24632715 GACTCTAAAG
24632725 GTATGGTAAGTGTAAGAAATAAT
1 GTATGGTAAGTGTAAGAAATAAT
* * *
24632748 GTATGGGTCAATTAGAAAGAACTAA-
1 GTAT-GGT-AAGT-GTAAGAAATAAT
24632773 GTA---TAAGTGTAAGAAATAAT
1 GTATGGTAAGTGTAAGAAATAAT
24632793 GTATGG
1 GTATGG
24632799 GTCAATTAGA
Statistics
Matches: 38, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
19 9 0.24
20 6 0.16
21 1 0.03
23 4 0.11
24 3 0.08
25 6 0.16
26 9 0.24
ACGTcount: A:0.43, C:0.03, G:0.26, T:0.28
Consensus pattern (23 bp):
GTATGGTAAGTGTAAGAAATAAT
Found at i:24632795 original size:45 final size:45
Alignment explanation
Indices: 24632731--24632821 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
24632721 AAAGGTATGG
24632731 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
1 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
24632776 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
1 TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
24632821 T
1 T
24632822 CCAACAAACT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.46, C:0.04, G:0.22, T:0.27
Consensus pattern (45 bp):
TAAGTGTAAGAAATAATGTATGGGTCAATTAGAAAGAACTAAGTA
Done.