Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 77 of 259
Found at i:24961417 original size:40 final size:40
Alignment explanation
Indices: 24961373--24961462 Score: 171
Period size: 40 Copynumber: 2.2 Consensus size: 40
24961363 GTAACAACTA
*
24961373 GCACGAATGCCTTCGGGACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGCACTTAACCCGGTTATAATAACCC
24961413 GCACGAATGCCTTCGGCACTTAACCCGGTTATAATAACCC
1 GCACGAATGCCTTCGGCACTTAACCCGGTTATAATAACCC
24961453 GCACGAATGC
1 GCACGAATGC
24961463 TATGCACATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (40 bp):
GCACGAATGCCTTCGGCACTTAACCCGGTTATAATAACCC
Found at i:24964334 original size:13 final size:13
Alignment explanation
Indices: 24964316--24964340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24964306 CCGAAACTAG
24964316 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
24964329 AAAGAAAAAAAA
1 AAAGAAAAAAAA
24964341 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:24965502 original size:40 final size:39
Alignment explanation
Indices: 24965418--24965602 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 39
24965408 TTGAATGATG
* *
24965418 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
24965458 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
24965498 TCCGGGCTAAGCCCGAACGCATTTGTGCGAGTTATTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
24965537 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
24965578 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
24965603 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
39 33 0.27
40 78 0.63
41 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:24965624 original size:79 final size:79
Alignment explanation
Indices: 24965471--24965635 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
24965461 GGACTAAGAT
* ** * *
24965471 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAACGCATTTGTGCGAGTTATTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAACGCATTTGAACGAGTGACTAA
*
24965536 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
24965550 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAACGCATTTGAACGAGTGA-C
* *
24965613 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
24965629 CCGAAGG
1 CCGAAGG
24965636 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.65
80 23 0.32
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAACGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:24973006 original size:40 final size:40
Alignment explanation
Indices: 24972951--24973046 Score: 156
Period size: 40 Copynumber: 2.4 Consensus size: 40
24972941 CTTCGGGACT
* * *
24972951 TAACCCGCACAAATGCCTTTGGCACTTAACCCGGTTATAA
1 TAACCCGCACGAATGCCTTCGGCACTTAACCCGATTATAA
*
24972991 TAACCCGCACGAATGCCTTCGGGACTTAACCCGATTATAA
1 TAACCCGCACGAATGCCTTCGGCACTTAACCCGATTATAA
24973031 TAACCCGCACGAATGC
1 TAACCCGCACGAATGC
24973047 TATGCACATA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.30, C:0.31, G:0.17, T:0.22
Consensus pattern (40 bp):
TAACCCGCACGAATGCCTTCGGCACTTAACCCGATTATAA
Found at i:24975815 original size:20 final size:20
Alignment explanation
Indices: 24975769--24975815 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
24975759 TGGTAAAGCT
*
24975769 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATAG
* *
24975789 TATGTTGTGAAAGATTATAG
1 TAAGTTGTGAAAGACTATAG
24975809 TAAGTTG
1 TAAGTTG
24975816 CAAGTTTGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATAG
Found at i:24979414 original size:39 final size:39
Alignment explanation
Indices: 24979360--24979437 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
24979350 TAAAATTGTA
24979360 ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
1 ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
*
24979399 ATTAATGGACACAGTACTTAATCAGTGCATGTTTATTCT
1 ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
24979438 TCTAGGGTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.38
Consensus pattern (39 bp):
ATTAATGGACACAGTACTTAATCAGTACATGTTTATTCT
Found at i:24983017 original size:18 final size:18
Alignment explanation
Indices: 24982994--24983028 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24982984 ACTTGCATAT
*
24982994 TGTTTATTGTTACTATAC
1 TGTTTACTGTTACTATAC
24983012 TGTTTACTGTTACTATA
1 TGTTTACTGTTACTATA
24983029 AAGGACCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.54
Consensus pattern (18 bp):
TGTTTACTGTTACTATAC
Found at i:24989250 original size:40 final size:40
Alignment explanation
Indices: 24989206--24989438 Score: 210
Period size: 40 Copynumber: 5.7 Consensus size: 40
24989196 GCTCCTCGTT
* *
24989206 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
24989246 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
24989286 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA------AC---TCGCA
*
24989334 CAAATGCCTTCGGG-CTTAGCCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTTAGTAACTCGCA
* * *
24989373 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
24989414 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
24989439 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 32
0.78 0.07 0.15
Matches are distributed among these distances:
38 2 0.01
39 34 0.21
40 76 0.47
41 13 0.08
42 1 0.01
45 2 0.01
48 32 0.20
49 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:24989352 original size:48 final size:48
Alignment explanation
Indices: 24989281--24989377 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
24989271 ATTTAGTAAC
24989281 TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAA
1 TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAA
*
24989329 TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTTGTATCTCGCACAAA
1 TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAA
24989377 T
1 T
24989378 GCCTTCGGAT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (48 bp):
TCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAA
Found at i:24989398 original size:127 final size:129
Alignment explanation
Indices: 24989206--24989438 Score: 311
Period size: 127 Copynumber: 1.8 Consensus size: 129
24989196 GCTCCTCGTT
24989206 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGAGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGAGACTTAACCCGG
*
24989271 AT-TTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATCGC
66 ATATT-GTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATCGC
24989333 A
129 A
* **
24989334 CAAATGCCTTCGGG-CTTAGCCCGGAATT-T-GT-ATCTCGCACAAATGCCTTCG-GATCTTAGT
1 CAAATGCCTTCGGGACATAGCCCGG--TTATAGTAAT-TCGCACAAATGCCTTCGAGA-CTTAAC
*
24989394 CCGGATATTGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
62 CCGGATATTGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
24989439 CATCATTCAA
Statistics
Matches: 93, Mismatches: 5, Indels: 14
0.83 0.04 0.12
Matches are distributed among these distances:
126 4 0.04
127 51 0.55
128 36 0.39
129 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (129 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGAGACTTAACCCGG
ATATTGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATCGCA
Found at i:24997242 original size:79 final size:80
Alignment explanation
Indices: 24997140--24997324 Score: 211
Period size: 79 Copynumber: 2.3 Consensus size: 80
24997130 GCTCCTCGTT
* *
24997140 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
24997202 CGGAT-TTAGTAAC-TCGCA
62 CGGATATT-GTAACTTAGCA
**
24997220 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGGA
*
24997285 TATTGTCACTTAGCA
66 TATTGTAACTTAGCA
*
24997300 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTC-GGGCTTAGCCCGGA
24997325 CATCATTCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
78 5 0.05
79 49 0.53
80 38 0.41
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATTGTAACTTAGCA
Found at i:24997324 original size:40 final size:40
Alignment explanation
Indices: 24997140--24997324 Score: 195
Period size: 40 Copynumber: 4.6 Consensus size: 40
24997130 GCTCCTCGTT
* * *
24997140 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAATTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATTAGTACTTCGCA
*
24997180 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAAC-TCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATTAGT-ACTTCGCA
*
24997220 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATATTAGTACT-TCGCA
* *
24997259 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATATTAGT-ACTTCGCA
24997300 CAAA-GCCTTCAGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
24997325 CATCATTCAA
Statistics
Matches: 125, Mismatches: 10, Indels: 20
0.81 0.06 0.13
Matches are distributed among these distances:
38 1 0.01
39 35 0.28
40 72 0.58
41 16 0.13
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGACTTAGCCCGGATATTAGTACTTCGCA
Found at i:25000284 original size:16 final size:16
Alignment explanation
Indices: 25000244--25000301 Score: 82
Period size: 16 Copynumber: 3.6 Consensus size: 16
25000234 AATTTATAAT
25000244 TATTAATATATAAT-TA
1 TATTAAT-TATAATATA
**
25000260 TATCCATTATAATATA
1 TATTAATTATAATATA
25000276 TATTAATTATAATATA
1 TATTAATTATAATATA
25000292 TATTAATTAT
1 TATTAATTAT
25000302 TATCAACTCT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
15 6 0.16
16 31 0.84
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (16 bp):
TATTAATTATAATATA
Found at i:25000290 original size:14 final size:14
Alignment explanation
Indices: 25000237--25000292 Score: 51
Period size: 16 Copynumber: 3.8 Consensus size: 14
25000227 ATAAAAAAAT
25000237 TTATAAT-TATTAA
1 TTATAATATATTAA
**
25000250 TATATAATTATATCCA
1 T-TATAA-TATATTAA
25000266 TTATAATATATATTAA
1 TTAT-A-ATATATTAA
25000282 TTATAATATAT
1 TTATAATATAT
25000293 ATTAATTATT
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
13 1 0.03
14 11 0.32
15 5 0.15
16 16 0.47
17 1 0.03
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (14 bp):
TTATAATATATTAA
Found at i:25005975 original size:28 final size:27
Alignment explanation
Indices: 25005856--25006011 Score: 152
Period size: 27 Copynumber: 5.7 Consensus size: 27
25005846 AAATTGTACA
* * *
25005856 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
25005883 GCACTCAGTGTGCAAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
25005910 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
25005937 GCACTAAGTGTGTGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
25005965 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
25005992 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
25006012 TTGTATAGCA
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
27 80 0.77
28 24 0.23
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:25005995 original size:55 final size:54
Alignment explanation
Indices: 25005856--25006004 Score: 165
Period size: 55 Copynumber: 2.7 Consensus size: 54
25005846 AAATTGTACA
* * *
25005856 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCAAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCAAAATGAATATGAT
* * * ** * *
25005910 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGTGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCAAAAT-GAATATGAT
* *
25005964 GGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGC
1 -GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGC
25006005 GAGTTGATTG
Statistics
Matches: 77, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
54 37 0.48
55 40 0.52
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCAAAATGAATATGAT
Found at i:25006022 original size:27 final size:27
Alignment explanation
Indices: 25005965--25006032 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
25005955 GGACTATGTG
* * *
25005965 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTACATA
**
25005992 GCACTAAGTGTGCGAGTTGATTGTATA
1 GCACTAAGTGTGCGAGTTGATTACATA
*
25006019 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
25006033 GGCTCAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTACATA
Found at i:25014045 original size:28 final size:27
Alignment explanation
Indices: 25013926--25014081 Score: 152
Period size: 27 Copynumber: 5.7 Consensus size: 27
25013916 AAATTGTACA
* * *
25013926 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTG
* * * *
25013953 GCACTCAGTGTGCAAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
25013980 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
25014007 GCACTAAGTGTGTGAGATGGACTATGTG
1 GCACTAAGTGTGCGA-ATTGACTATGTG
* * *
25014035 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
25014062 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
25014082 TTGTATAGCA
Statistics
Matches: 104, Mismatches: 22, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
27 80 0.77
28 24 0.23
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:25014065 original size:55 final size:54
Alignment explanation
Indices: 25013926--25014074 Score: 165
Period size: 55 Copynumber: 2.7 Consensus size: 54
25013916 AAATTGTACA
* * *
25013926 GCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCAAAATGAATATGAT
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCAAAATGAATATGAT
* * * ** * *
25013980 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGTGAGATGGACTATG-T
1 GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCAAAAT-GAATATGAT
* *
25014034 GGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGC
1 -GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGC
25014075 GAGTTGATTG
Statistics
Matches: 77, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
54 37 0.48
55 40 0.52
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCAAAATGAATATGAT
Found at i:25014092 original size:27 final size:27
Alignment explanation
Indices: 25014035--25014102 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
25014025 GGACTATGTG
* * *
25014035 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAGTTGATTACATA
**
25014062 GCACTAAGTGTGCGAGTTGATTGTATA
1 GCACTAAGTGTGCGAGTTGATTACATA
*
25014089 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
25014103 GGCTCAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.22, C:0.15, G:0.32, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGTTGATTACATA
Found at i:25030526 original size:29 final size:29
Alignment explanation
Indices: 25030462--25030574 Score: 138
Period size: 29 Copynumber: 3.9 Consensus size: 29
25030452 CATACATGCA
* * * *
25030462 TATGGCCCACTAGGCCCA-ATCTTATTCA
1 TATGGCCCATTAGGCCCAGTTCATATTCT
* * *
25030490 AATGGCCCATTTGGCCGAGTTCATATTCT
1 TATGGCCCATTAGGCCCAGTTCATATTCT
25030519 TATGGCCCATTAGGCCCAGTTCATATTCT
1 TATGGCCCATTAGGCCCAGTTCATATTCT
**
25030548 TATGGCCCATTAGGCCCAAATCATATT
1 TATGGCCCATTAGGCCCAGTTCATATT
25030575 ATATTCATGC
Statistics
Matches: 72, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 14 0.19
29 58 0.81
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAGTTCATATTCT
Found at i:25030680 original size:10 final size:9
Alignment explanation
Indices: 25030650--25030688 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
25030640 GGCCCAACAA
*
25030650 CCCATTAGG
1 CCCATTTGG
*
25030659 CCCATTTAG
1 CCCATTTGG
25030668 CCCATTTCGG
1 CCCATTT-GG
25030678 CCCATTTGG
1 CCCATTTGG
25030687 CC
1 CC
25030689 AATTCTCAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.15, C:0.38, G:0.18, T:0.28
Consensus pattern (9 bp):
CCCATTTGG
Found at i:25030818 original size:8 final size:8
Alignment explanation
Indices: 25030797--25030841 Score: 63
Period size: 8 Copynumber: 5.6 Consensus size: 8
25030787 CAACTTTCGA
25030797 CTTTTTGG
1 CTTTTTGG
* *
25030805 CATTTTAG
1 CTTTTTGG
25030813 CTTTTTGG
1 CTTTTTGG
25030821 CTTTTTGG
1 CTTTTTGG
*
25030829 CATTTTGG
1 CTTTTTGG
25030837 CTTTT
1 CTTTT
25030842 GCTGATTCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 31 1.00
ACGTcount: A:0.07, C:0.13, G:0.20, T:0.60
Consensus pattern (8 bp):
CTTTTTGG
Found at i:25034273 original size:28 final size:29
Alignment explanation
Indices: 25034187--25034282 Score: 149
Period size: 29 Copynumber: 3.3 Consensus size: 29
25034177 GAAAGCATGA
25034187 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
25034216 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
* * *
25034245 ATATGAATGAGA-TTGTGCCTAGTGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
25034273 ATATGCATGT
1 ATATGAATGT
25034283 ATGTAGACTT
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 22 0.35
29 40 0.65
ACGTcount: A:0.25, C:0.14, G:0.30, T:0.31
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:25040124 original size:21 final size:21
Alignment explanation
Indices: 25040099--25040157 Score: 73
Period size: 21 Copynumber: 2.8 Consensus size: 21
25040089 ACTATCTCGA
*
25040099 TGTCATGACACAAAACCGTTG
1 TGTCATGACACAAAACCATTG
*
25040120 TGTCATGATACAAAACCATTG
1 TGTCATGACACAAAACCATTG
** *
25040141 CATCATGTCACAAAACC
1 TGTCATGACACAAAACC
25040158 TCGATGTTGT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24
Consensus pattern (21 bp):
TGTCATGACACAAAACCATTG
Found at i:25046305 original size:21 final size:21
Alignment explanation
Indices: 25046281--25046321 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
25046271 CCACTCATAG
25046281 TCAAACATTATTTCAAATTCA
1 TCAAACATTATTTCAAATTCA
25046302 TCAAACATTATTTCAAATTC
1 TCAAACATTATTTCAAATTC
25046322 CCTTTCTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (21 bp):
TCAAACATTATTTCAAATTCA
Found at i:25047835 original size:44 final size:43
Alignment explanation
Indices: 25047723--25047854 Score: 153
Period size: 44 Copynumber: 3.0 Consensus size: 43
25047713 CTTACATGTA
*
25047723 ATCAAATATCGATGCAACTGTCCCAGACAGGGTCTTACAC-AAA-
1 ATCAAATAT-GATGCAA-TGTCCCAGACATGGTCTTACACGAAAT
* *
25047766 ATCAAATATGATGCCGATGTCCCAGACATGCTCTTACACGTAAAT
1 ATCAAATATGATG-CAATGTCCCAGACATGGTCTTACACG-AAAT
* *
25047811 CTCAAAT-TGATGCTAATGTCCCAGACGTGGTCTTACACGAAAT
1 ATCAAATATGATGC-AATGTCCCAGACATGGTCTTACACGAAAT
25047854 A
1 A
25047855 ACATATTGGA
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
42 24 0.32
43 16 0.21
44 30 0.39
45 6 0.08
ACGTcount: A:0.34, C:0.24, G:0.17, T:0.25
Consensus pattern (43 bp):
ATCAAATATGATGCAATGTCCCAGACATGGTCTTACACGAAAT
Found at i:25047874 original size:44 final size:42
Alignment explanation
Indices: 25047700--25047874 Score: 115
Period size: 43 Copynumber: 4.0 Consensus size: 42
25047690 AATGCCAACA
* * * * * *
25047700 TCCCAAACGTGGTCTTACATGTAATCAA-ATATCGATGCAACTG
1 TCCCAGACGTGGTCTTACACGAAAT-AACATATTGATCCTA-TG
* *
25047743 TCCCAGACAG-GGTCTTACACAAAATCAA-ATA-TGATGCCGATG
1 TCCCAGAC-GTGGTCTTACACGAAAT-AACATATTGAT-CCTATG
* * ** * *
25047785 TCCCAGACATGCTCTTACACGTAAATCTCAAATTGATGCTAATG
1 TCCCAGACGTGGTCTTACACG-AAATAACATATTGATCCT-ATG
25047829 TCCCAGACGTGGTCTTACACGAAATAACATATTGGAATCCTATG
1 TCCCAGACGTGGTCTTACACGAAATAACATATT-G-ATCCTATG
25047873 TC
1 TC
25047875 ATGACATATG
Statistics
Matches: 102, Mismatches: 21, Indels: 17
0.73 0.15 0.12
Matches are distributed among these distances:
42 22 0.22
43 43 0.42
44 33 0.32
45 4 0.04
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACACGAAATAACATATTGATCCTATG
Found at i:25050047 original size:28 final size:28
Alignment explanation
Indices: 25049993--25050051 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 28
25049983 CGTTTAACTA
*
25049993 AATTTTGTATATTAATATGTTTGAATTG
1 AATTTTGTATATTAATATGTGTGAATTG
25050021 AATTTTGTATATGTGAAT-TGTGT-AATTG
1 AATTTTGTATAT-T-AATATGTGTGAATTG
25050049 AAT
1 AAT
25050052 GGTATACATG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 20 0.71
29 5 0.18
30 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (28 bp):
AATTTTGTATATTAATATGTGTGAATTG
Found at i:25077411 original size:26 final size:26
Alignment explanation
Indices: 25077381--25077434 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
25077371 CATGAATCAA
25077381 ATAAATATTATTTAATCAAATAAATC
1 ATAAATATTATTTAATCAAATAAATC
25077407 ATAAATATTATTTAATCAAATAAATC
1 ATAAATATTATTTAATCAAATAAATC
25077433 AT
1 AT
25077435 CCTAGCATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (26 bp):
ATAAATATTATTTAATCAAATAAATC
Found at i:25096076 original size:28 final size:28
Alignment explanation
Indices: 25096036--25096109 Score: 114
Period size: 28 Copynumber: 2.6 Consensus size: 28
25096026 GTTCAAATTG
* *
25096036 TATAGCACTAAGTGTGCGAGTTTGATTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
25096064 TATAGCACTAAGTGTGCGAGTTCGACTA
1 TATAGCACTAAGTGTGCGAGTTCGACTA
25096092 T-TAAGCACTAAGTGTGCG
1 TAT-AGCACTAAGTGTGCG
25096110 GGCTCATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 42 0.98
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (28 bp):
TATAGCACTAAGTGTGCGAGTTCGACTA
Found at i:25100073 original size:18 final size:18
Alignment explanation
Indices: 25100052--25100086 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
25100042 AAACATTATT
25100052 AGAACTAGAATCAAAATG
1 AGAACTAGAATCAAAATG
*
25100070 AGAATTAGAATCAAAAT
1 AGAACTAGAATCAAAAT
25100087 CAGGTGACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.09, G:0.14, T:0.20
Consensus pattern (18 bp):
AGAACTAGAATCAAAATG
Found at i:25100106 original size:25 final size:25
Alignment explanation
Indices: 25100078--25100161 Score: 132
Period size: 25 Copynumber: 3.4 Consensus size: 25
25100068 TGAGAATTAG
*
25100078 AATCAAAATCAGGTGACAGAATCAA
1 AATCAGAATCAGGTGACAGAATCAA
*
25100103 AATCAGAATCAGGTGACAGAATCAG
1 AATCAGAATCAGGTGACAGAATCAA
* *
25100128 AATCAGTATCAGGTAACAGAATCAA
1 AATCAGAATCAGGTGACAGAATCAA
25100153 AATCAGAAT
1 AATCAGAAT
25100162 GTGAATGCAA
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 53 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
AATCAGAATCAGGTGACAGAATCAA
Found at i:25100114 original size:6 final size:6
Alignment explanation
Indices: 25100058--25100161 Score: 52
Period size: 6 Copynumber: 16.8 Consensus size: 6
25100048 TATTAGAACT
* * * * * *
25100058 AGAATC AAAATG AGAATT AGAATC AAAATC AG-GTGAC AGAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
25100107 AGAATC AG-GTGAC AGAATC AGAATC AGTATC AGGTAA-C AGAATC AAAATC
1 AGAATC AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
25100157 AGAAT
1 AGAAT
25100162 GTGAATGCAA
Statistics
Matches: 72, Mismatches: 17, Indels: 18
0.67 0.16 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.78
7 9 0.12
8 3 0.04
ACGTcount: A:0.50, C:0.13, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:25104395 original size:14 final size:13
Alignment explanation
Indices: 25104375--25104406 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
25104365 AATATTTAAC
25104375 TTGTTCTTAATTA
1 TTGTTCTTAATTA
25104388 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
25104402 TTGTT
1 TTGTT
25104407 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:25108956 original size:6 final size:6
Alignment explanation
Indices: 25108945--25109007 Score: 108
Period size: 6 Copynumber: 10.5 Consensus size: 6
25108935 TCCTCCTATC
25108945 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
* *
25108993 TTTTCA TTTTCA TTT
1 TTTTTA TTTTTA TTT
25109008 CAATTTTATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 56 1.00
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:25114410 original size:80 final size:80
Alignment explanation
Indices: 25114294--25114479 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
25114284 AGTAACTCAT
* * *
25114294 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCAGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
25114358 GA-ATTAGT-A-TCTCGT
65 GATA-TAGTCACT-TAGC
**
25114373 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
25114437 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
25114454 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
25114480 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 9 0.10
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:25114439 original size:40 final size:40
Alignment explanation
Indices: 25114296--25114479 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
25114286 TAACTCATAC
* *
25114296 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* * * *
25114336 AATGCCTTCAGGACTTAACCCGGAATTAGTATCTCGTACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25114376 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
25114416 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
25114457 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
25114480 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
39 8 0.07
40 101 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:25122123 original size:79 final size:79
Alignment explanation
Indices: 25122024--25122237 Score: 213
Period size: 80 Copynumber: 2.7 Consensus size: 79
25122014 CTCGTTCAAG
* * * *
25122024 TGCCTTCGGGACATAGCCCGG-TTACAGTAACTCATAC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGGATT--AGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
25122087 TTAA-AACTCGCACGAA
63 TTAATAACTCGCACAAA
* * *
25122103 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGG-ATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
25122168 AATAACTCGCACAAA
65 AATAACTCGCACAAA
* ** * *
25122183 TGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTA
1 TGCCTTCGGGA-CATAACCCGGAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTA
25122238 GCCTGGACAG
Statistics
Matches: 114, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
79 37 0.32
80 69 0.61
81 8 0.07
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.25
Consensus pattern (79 bp):
TGCCTTCGGGACATAACCCGGATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATTA
ATAACTCGCACAAA
Found at i:25122160 original size:80 final size:80
Alignment explanation
Indices: 25122059--25122237 Score: 224
Period size: 80 Copynumber: 2.2 Consensus size: 80
25122049 AGTAACTCAT
* * *
25122059 ACAATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAATGCCTTCGGGA-CTTAACCC
1 ACAAAGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
25122122 GGA-ATTAGT-A-TCTCGC
64 GGATA-TAGTCACT-TAGC
**
25122138 ACAAAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 ACAAA-GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCG
25122203 GATATAGTCACTTAGC
65 GATATAGTCACTTAGC
25122219 ACAAAGCCTTCGGGACTTA
1 ACAAAGCCTTCGGGACTTA
25122238 GCCTGGACAG
Statistics
Matches: 88, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 66 0.75
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:25122204 original size:40 final size:40
Alignment explanation
Indices: 25122061--25122191 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
25122051 TAACTCATAC
* *
25122061 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
25122101 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25122141 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
25122181 AATGCCTTCGG
1 AATGCCTTCGG
25122192 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.04
40 79 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:25122238 original size:40 final size:40
Alignment explanation
Indices: 25122064--25122240 Score: 155
Period size: 40 Copynumber: 4.4 Consensus size: 40
25122054 CTCATACAAT
* * * * *
25122064 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGA-ATTAATAACTAGCACAAAG
* * * *
25122104 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
* * *
25122144 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
* * *
25122184 GCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGAAT-TAATAAC-TAGCACAAAG
25122224 GCCTTCGGGACTTAGCC
1 GCCTTCGGGACTTAGCC
25122241 TGGACAGCAT
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 99 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
Found at i:25131829 original size:30 final size:30
Alignment explanation
Indices: 25131774--25132025 Score: 185
Period size: 30 Copynumber: 8.5 Consensus size: 30
25131764 TTGTTACCAG
* * * * *
25131774 CCCTTTTCATAGTTCGGTAGTCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * *
25131804 CCCTTTCCATATTTTGATAGCCGAAGACAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* * * *
25131834 CCCTTTTCATTA-TTGATGGTC-ATCA-CCAC
1 CCCTTTTCATAATTTGATAGCCGA--AGCCAT
* *
25131863 CCCTTTTCATAATTTGATAGTCGAAGCTAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
* **
25131893 CCCTTTTCATAAATCAATAGCCGAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
*
25131923 CCCTTTTCATAATTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTTGATAGCCGAAGCCAT
** * * *
25131953 CCCTTTTCATAATTCAATGGTCGTCA-CCAT
1 CCCTTTTCATAATTTGATAGCCG-AAGCCAT
* *
25131983 CCCTTTTCAT--TGTTGATAGTCGTCA-CCAT
1 CCCTTTTCATAAT-TTGATAGCCG-AAGCCAT
25132012 CCCTTTTCATAATT
1 CCCTTTTCATAATT
25132026 CAATAGCTGA
Statistics
Matches: 177, Mismatches: 36, Indels: 18
0.77 0.16 0.08
Matches are distributed among these distances:
28 2 0.01
29 45 0.25
30 127 0.72
31 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.37
Consensus pattern (30 bp):
CCCTTTTCATAATTTGATAGCCGAAGCCAT
Found at i:25131913 original size:89 final size:89
Alignment explanation
Indices: 25131769--25131967 Score: 238
Period size: 89 Copynumber: 2.2 Consensus size: 89
25131759 GATGGTTGTT
* * * ** **
25131769 ACCAGCCCTTTTCATAGTTCGGTAGTCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACAT
1 ACCACCCCTTTTCATAATTCGATAGTCGAAGCTATCCCTTTCCATAAATCAATAGCCGAAGACAT
25131834 CCCTTTTCATTATTGATGGTCATC
66 CCCTTTTCATTATTGATGGTCATC
* * *
25131858 ACCACCCCTTTTCATAATTTGATAGTCGAAGCTATCCCTTTTCATAAATCAATAGCCGAAGCCAT
1 ACCACCCCTTTTCATAATTCGATAGTCGAAGCTATCCCTTTCCATAAATCAATAGCCGAAGACAT
* * * *
25131923 CCCTTTTCATAATTTGATAGCCA-A
66 CCCTTTTCATTA-TTGATGGTCATC
*
25131947 AGCCATCCCTTTTCATAATTC
1 A-CCACCCCTTTTCATAATTC
25131968 AATGGTCGTC
Statistics
Matches: 92, Mismatches: 16, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
89 67 0.73
90 25 0.27
ACGTcount: A:0.26, C:0.27, G:0.12, T:0.35
Consensus pattern (89 bp):
ACCACCCCTTTTCATAATTCGATAGTCGAAGCTATCCCTTTCCATAAATCAATAGCCGAAGACAT
CCCTTTTCATTATTGATGGTCATC
Found at i:25131941 original size:60 final size:60
Alignment explanation
Indices: 25131774--25132047 Score: 229
Period size: 59 Copynumber: 4.6 Consensus size: 60
25131764 TTGTTACCAG
* ** * * * * * *
25131774 CCCTTTTCATAGTTCGGTAGTCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACAT
1 CCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
* * * * * *
25131834 CCCTTTTCATTATT-GATGGTC-ATCA-CCACCCCTTTTCATAATTTGATAGTCGAAGCTAT
1 CCCTTTTCATAATTCAATAGCCGA--AGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
* * *
25131893 CCCTTTTCATAAATCAATAGCCGAAGCCATCCCTTTTCATAATTTGATAGCCAAAGCCAT
1 CCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
* * * *
25131953 CCCTTTTCATAATTCAATGGTCGTCA-CCATCCCTTTTCAT--TGTTGATAGTCGTCA-CCAT
1 CCCTTTTCATAATTCAATAGCCG-AAGCCATCCCTTTTCATAAT-TTGATAGTCG-AAGCCAT
* * *
25132012 CCCTTTTCATAATTCAATAGCTGAAGCTATCTCTTT
1 CCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTT
25132048 CCATTTTTTG
Statistics
Matches: 172, Mismatches: 33, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
58 3 0.02
59 85 0.49
60 82 0.48
61 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (60 bp):
CCCTTTTCATAATTCAATAGCCGAAGCCATCCCTTTTCATAATTTGATAGTCGAAGCCAT
Found at i:25131987 original size:90 final size:89
Alignment explanation
Indices: 25131769--25131992 Score: 218
Period size: 89 Copynumber: 2.5 Consensus size: 89
25131759 GATGGTTGTT
* * ** * * ** **
25131769 ACCAGCCCTTTTCATAGTTCGGTAGTCGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACAT
1 ACCACCCCTTTTCATAATTCAATAGTCGAAGCCATCCCTTTTCATAAATCAATAGCCGAAGACAT
* * * *
25131834 CCCTTTTCATTATTGATGGTCATC
66 CCCTTTTCATAATTGATAGCCATA
** * *
25131858 ACCACCCCTTTTCATAATTTGATAGTCGAAGCTATCCCTTTTCATAAATCAATAGCCGAAGCCAT
1 ACCACCCCTTTTCATAATTCAATAGTCGAAGCCATCCCTTTTCATAAATCAATAGCCGAAGACAT
25131923 CCCTTTTCATAATTTGATAGCCA-A
66 CCCTTTTCATAA-TTGATAGCCATA
* * *
25131947 AGCCATCCCTTTTCATAATTCAATGGTCGTCA-CCATCCCTTTTCAT
1 A-CCACCCCTTTTCATAATTCAATAGTCG-AAGCCATCCCTTTTCAT
25131993 TGTTGATAGT
Statistics
Matches: 112, Mismatches: 20, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
89 67 0.60
90 44 0.39
91 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.12, T:0.35
Consensus pattern (89 bp):
ACCACCCCTTTTCATAATTCAATAGTCGAAGCCATCCCTTTTCATAAATCAATAGCCGAAGACAT
CCCTTTTCATAATTGATAGCCATA
Found at i:25131999 original size:119 final size:118
Alignment explanation
Indices: 25131795--25132081 Score: 355
Period size: 119 Copynumber: 2.4 Consensus size: 118
25131785 GTTCGGTAGT
* * *
25131795 CGAAGCTATCCCTTTCCATATTTTGATAGCCGAAGACATCCCTTTTCATTATTGATGGTCATCAC
1 CGAAGCTATCCCTTTCCATATTTTGATAGCCAAAGACATCCCTTTTCATAATTAATGGTCATCAC
*
25131860 CACCCCTTTTCATAATTTGATAGTCG-AAGCTATCCCTTTTCATAAATCAATAGC
66 CACCCCTTTTCAT-ATTTGATAGTCGTAA-CCATCCCTTTTCATAAATCAATAGC
* * * * *
25131914 CGAAGCCATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATAATTCAATGGTCGTCA
1 CGAAGCTATCCCTTTCCATATTTTGATAGCCAAAGACATCCCTTTTCATAATT-AATGGTCATCA
* * *
25131979 CCATCCCTTTTCAT-TGTTGATAGTCGTCACCATCCCTTTTCATAATTCAATAGC
65 CCACCCCTTTTCATAT-TTGATAGTCGTAACCATCCCTTTTCATAAATCAATAGC
* * * * *
25132033 TGAAGCTATCTCTTTCCATTTTTTGATAACCAAAGTA-ATCCATTTTCAT
1 CGAAGCTATCCCTTTCCATATTTTGATAGCCAAAG-ACATCCCTTTTCAT
25132082 TGGCCGATGA
Statistics
Matches: 143, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
118 1 0.01
119 119 0.83
120 23 0.16
ACGTcount: A:0.26, C:0.26, G:0.11, T:0.37
Consensus pattern (118 bp):
CGAAGCTATCCCTTTCCATATTTTGATAGCCAAAGACATCCCTTTTCATAATTAATGGTCATCAC
CACCCCTTTTCATATTTGATAGTCGTAACCATCCCTTTTCATAAATCAATAGC
Found at i:25132024 original size:59 final size:59
Alignment explanation
Indices: 25131802--25132029 Score: 239
Period size: 60 Copynumber: 3.8 Consensus size: 59
25131792 AGTCGAAGCT
* * * * * *
25131802 ATCCCTTTCCATATTTTGATAGCCGAAGACATCCCTTTTCATTATT-GATGGTCATCACC
1 ATCCCTTTTCATA-TTTGATAGTCGAAGCCATCCCTTTTCATAATTCAATGGTCGTCACC
* * * * * *
25131861 ACCCCTTTTCATAATTTGATAGTCGAAGCTATCCCTTTTCATAAATCAATAGCCG-AAGCC
1 ATCCCTTTTCAT-ATTTGATAGTCGAAGCCATCCCTTTTCATAATTCAATGGTCGTCA-CC
* *
25131921 ATCCCTTTTCATAATTTGATAGCCAAAGCCATCCCTTTTCATAATTCAATGGTCGTCACC
1 ATCCCTTTTCAT-ATTTGATAGTCGAAGCCATCCCTTTTCATAATTCAATGGTCGTCACC
*
25131981 ATCCCTTTTCAT-TGTTGATAGTCGTCA-CCATCCCTTTTCATAATTCAAT
1 ATCCCTTTTCATAT-TTGATAGTCG-AAGCCATCCCTTTTCATAATTCAAT
25132030 AGCTGAAGCT
Statistics
Matches: 140, Mismatches: 23, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
58 1 0.01
59 68 0.49
60 70 0.50
61 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.11, T:0.36
Consensus pattern (59 bp):
ATCCCTTTTCATATTTGATAGTCGAAGCCATCCCTTTTCATAATTCAATGGTCGTCACC
Found at i:25132179 original size:12 final size:12
Alignment explanation
Indices: 25132164--25132202 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
25132154 TTATAACATA
25132164 ATTTAAAATGCT
1 ATTTAAAATGCT
25132176 ATTT-AAA--C-
1 ATTTAAAATGCT
25132184 ATTTAAAATGCT
1 ATTTAAAATGCT
25132196 ATTTAAA
1 ATTTAAA
25132203 CATAGGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 8
0.74 0.00 0.26
Matches are distributed among these distances:
8 4 0.17
9 4 0.17
11 4 0.17
12 11 0.48
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (12 bp):
ATTTAAAATGCT
Found at i:25132189 original size:20 final size:20
Alignment explanation
Indices: 25132164--25132205 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
25132154 TTATAACATA
25132164 ATTTAAAATGCTATTTAAAC
1 ATTTAAAATGCTATTTAAAC
25132184 ATTTAAAATGCTATTTAAAC
1 ATTTAAAATGCTATTTAAAC
25132204 AT
1 AT
25132206 AGGAACTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (20 bp):
ATTTAAAATGCTATTTAAAC
Found at i:25142076 original size:55 final size:55
Alignment explanation
Indices: 25142016--25142124 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
25142006 AGTTTCGAAT
25142016 ACGAACCTGTACCACTCACAACATGATTATATCATTCCATATCATTGTCATAAGA
1 ACGAACCTGTACCACTCACAACATGATTATATCATTCCATATCATTGTCATAAGA
*
25142071 ACGAACCTGTACCACTCACAACATGATTATATCATTCTATATCATTGTCATAAG
1 ACGAACCTGTACCACTCACAACATGATTATATCATTCCATATCATTGTCATAAG
25142125 CTTTTAAAAT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (55 bp):
ACGAACCTGTACCACTCACAACATGATTATATCATTCCATATCATTGTCATAAGA
Found at i:25142450 original size:144 final size:144
Alignment explanation
Indices: 25142237--25142557 Score: 398
Period size: 144 Copynumber: 2.2 Consensus size: 144
25142227 TGTTGAGGCG
* * * * *
25142237 GATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCGTCTCATTGTCAATGCCATGTCCCAGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGACTCATCGTCAATGCCATGTCCCAAAC
** * *
25142302 ATGGTCTTACACTGGCTCTCATAAGGTAACCGATGCCATGTCCTAGACATGGTCTTACGCTAGCA
66 ATGGTCTTACACTGGCTCTCATAACATAACCGATGCCATGTCCCAGACATGGTCTTACACTA--A
25142367 C-AAC-CATCAATGCC
129 CGAACACATCAATGCC
* * ***
25142381 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ACAAT-ATCGTCGATGCTATGTTTGAA
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGAC--TCATCGTCAATGCCATGTCCCAA
* **
25142444 ACATGGTCTTACACTGGCTCTCATATCATGGCCGATGCCATGTCCCAGACATGGTCTTACACTAA
64 ACATGGTCTTACACTGGCTCTCATAACATAACCGATGCCATGTCCCAGACATGGTCTTACACTAA
* * *
25142509 CGTACATATCAATGTC
129 CGAACACATCAATGCC
25142525 GATGCCATGTCCCAGACATGGTCTTACACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
25142558 ACACGTATCA
Statistics
Matches: 153, Mismatches: 20, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
142 2 0.01
143 3 0.02
144 147 0.96
145 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (144 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGACTCATCGTCAATGCCATGTCCCAAAC
ATGGTCTTACACTGGCTCTCATAACATAACCGATGCCATGTCCCAGACATGGTCTTACACTAACG
AACACATCAATGCC
Found at i:25142567 original size:48 final size:47
Alignment explanation
Indices: 25142190--25142567 Score: 293
Period size: 48 Copynumber: 7.9 Consensus size: 47
25142180 TGAATTGCCA
* * * ** *
25142190 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGA-GGCGG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAC-TATCAATGTC-G
* * * * * *
25142238 ATGCCATGTCCCAGACATGGTTTTACACTAGCTCTCGTCTCATTGTCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAC-TATCAATGTCG
* *
25142286 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-AT-AAGGTAACCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACTATCAATGT---CG
* * * * * *
25142334 ATGCCATGTCCTAGACATGGTCTTACGCTAGCACAACCATCAATGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTC-ACTATCAATGTCG
*
25142382 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-A-CAATATCGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACTATC-A-AT-GTCG
* *** * * *
25142430 ATGCTATGTTTGAAACATGGTCTTACACTGGCTCTCATATC-ATGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAC-TATCAAT-GTCG
**
25142478 ATGCCATGTCCCAGACATGGTCTTACACTAACGT-ACATATCAATGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGC-TCAC-TATCAATGTCG
*
25142526 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACGTATCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCAC-TATCA
25142568 CCCAAATGTC
Statistics
Matches: 263, Mismatches: 51, Indels: 32
0.76 0.15 0.09
Matches are distributed among these distances:
45 4 0.02
46 3 0.01
47 3 0.01
48 240 0.91
49 6 0.02
50 3 0.01
51 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.28
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCTCACTATCAATGTCG
Found at i:25145800 original size:40 final size:40
Alignment explanation
Indices: 25145728--25145912 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
25145718 GCTACTCGTT
* * * *
25145728 CAAATGCCTTTGGGACATAGCTCTG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
25145768 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTGGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
25145808 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
25145847 CCAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25145888 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25145913 CATCATTCGA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 33 0.27
40 75 0.61
41 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25145842 original size:79 final size:80
Alignment explanation
Indices: 25145756--25145912 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
25145746 AGCTCTGTTA
* * *
25145756 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TGGCACCAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTC
25145819 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * *
25145835 TAGTAACTCGCACCAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
25145900 GACTTAGCCCGGA
66 GACTTAGCCCGGA
25145913 CATCATTCGA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 49 0.73
80 15 0.22
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:25158389 original size:43 final size:42
Alignment explanation
Indices: 25158313--25158424 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 42
25158303 TGAGTTTACT
* * *
25158313 TGTAAGACCATATCAGGGATATGGCATCTATATGAGACTT-CG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGA-TTGCA
* *
25158355 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATTGCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTGCA
*
25158398 TGTAAGACCATATCTGGGATATCGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
25158425 TGGTACAATA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 25 0.42
43 35 0.58
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTGCA
Found at i:25162774 original size:13 final size:12
Alignment explanation
Indices: 25162752--25162785 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
25162742 GGCCTGCCCG
25162752 TATTAATTTTTTA
1 TATT-ATTTTTTA
25162765 TATTA-TTTTTA
1 TATTATTTTTTA
25162776 TATTATTTTT
1 TATTATTTTT
25162786 AAATATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 11 0.55
12 5 0.25
13 4 0.20
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TATTATTTTTTA
Found at i:25162791 original size:13 final size:11
Alignment explanation
Indices: 25162759--25162786 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
25162749 CCGTATTAAT
25162759 TTTTTATATTA
1 TTTTTATATTA
25162770 TTTTTATATTA
1 TTTTTATATTA
25162781 TTTTTA
1 TTTTTA
25162787 AATATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTTATATTA
Found at i:25162951 original size:29 final size:30
Alignment explanation
Indices: 25162909--25162969 Score: 106
Period size: 29 Copynumber: 2.1 Consensus size: 30
25162899 CTTAACAAGT
25162909 AAATGCCTCTAAAATAATAA-AAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
*
25162938 AAATGCCTTTAAAATAATAACAAAATTAAC
1 AAATGCCTCTAAAATAATAACAAAATTAAC
25162968 AA
1 AA
25162970 GAAAATAAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 19 0.63
30 11 0.37
ACGTcount: A:0.59, C:0.13, G:0.03, T:0.25
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAC
Found at i:25173286 original size:22 final size:22
Alignment explanation
Indices: 25173261--25173305 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
25173251 TTTAATAAAG
25173261 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
25173283 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
25173305 A
1 A
25173306 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:25177060 original size:22 final size:22
Alignment explanation
Indices: 25177035--25177079 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
25177025 TTTAATAAAG
25177035 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
25177057 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
25177079 A
1 A
25177080 CAGTTCCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:25181679 original size:28 final size:28
Alignment explanation
Indices: 25181615--25181671 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
25181605 TTTCTTTCAC
* *
25181615 AAAATGCAAATAAATAAATAAAGTTTAG
1 AAAATGCAAATAAATAAATAAAATTAAG
25181643 AAAATGCAAATAAATAAATAAAATGTAAG
1 AAAATGCAAATAAATAAATAAAAT-TAAG
25181672 GCATGCAACA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 23 0.88
29 3 0.12
ACGTcount: A:0.63, C:0.04, G:0.11, T:0.23
Consensus pattern (28 bp):
AAAATGCAAATAAATAAATAAAATTAAG
Found at i:25182978 original size:286 final size:284
Alignment explanation
Indices: 25181417--25183391 Score: 1388
Period size: 300 Copynumber: 6.8 Consensus size: 284
25181407 TTCCCAAAAA
* * * * ** * * *
25181417 GTCACCCATCCTAGTAT-TACTCTCACCTAAGCACGCTTAATTGTAGAGTTCT-ATTGAAATCCA
1 GTCACCCATCCTAGT-TCTACTCTTACCCAAGCATGCTTAACTACAGAGTTCTGATGGATA-CGA
* * * ** * * * *
25181480 TTGCATTAATGCTAGTATGATCGCACCCCACAAATCTTGCACAATC-AGTTTATATAAAGGCTAT
64 -TGCATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCTA-TTTACATAAAGGCTAC
* * * * *
25181544 CTCTTATTGCACTTGCGCCTCAAATTTGAATGCAAATTTGACCAAATAATGTTTCAAAAGATTTC
127 CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTTA
* ** * ***
25181609 TTTCACAAAATGC----AAATAAATAAATAAAGTTTAGAAAATGCAAATAAATAAATAAAATGTA
192 TTTCGCAAAACACAAATAAATAAATAAATAAAGTTTTGAAAACAAAAATAAA-AAATAAAATGTA
**
25181670 AGGCATGCAACACGAGGACTT-CTCAGGAG
256 AGGGGTGCAACACGAGGACTTCCT-AGGAG
* * * *
25181699 GTCATCCATCCTAGTTCTACTCTAACCCAA-CAATGCTTAATTGCAGAGTTCTGATAGGATACGA
1 GTCACCCATCCTAGTTCTACTCTTACCCAAGC-ATGCTTAACTACAGAGTTCTGAT-GGATACGA
* * * * *
25181763 TGCTTTAGTGTTGGTATAATCGCACCTGTCAATTCTTGCGCAAT-TGATTTACATAAAGGCTACC
64 TGCATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCT-ATTTACATAAAGGCTACC
* * * * *
25181827 CCTTAACGCACTTGTGCCTCGAATTTTAATGCAAATTTGACCAAATAACCTTTCAAAATATTTAT
128 CCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTTAT
** * * *
25181892 TTCAAAAAACAAAAATAAATAAATAAATAATGTTTAGAAAGGTTTATTCCACAAAACAGAAATAA
193 TTCGCAAAACACAAATAAATAAAT--A-AA----T--AAA-G-TT-TT---GAAAACAAAAAT-A
* * * * * *
25181957 AAAAAAACAAACGTGAGGGGTGCAACATG-GGACTTCCAAAGAG
242 AAAAATA-AAATGTAAGGGGTGCAACACGAGGACTTCCTAGGAG
* * * * * * * *
25182000 GTCACCCATCCTAGTACTAATCTTGCCCAAGCACGCTTAACTATAGTGTTTTGATGGAATCCAGT
1 GTCACCCATCCTAGTTCTACTCTTACCCAAGCATGCTTAACTACAGAGTTCTGATGG-ATAC-G-
* * * * *
25182065 AT--ATTAGTGCTAGTATGATCACATCCATCAGTTCTTGCGCAATCTATTTACATAAAGGCTGCC
63 ATGCATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCTATTTACATAAAGGCTACC
* * * ** * **
25182128 CCTTATCGCACTTGCGACTCAAATTTGAATGAAAATTCAACCAAATAA-TTTTCAAATTATTTAT
128 CCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTTAT
* * * *
25182192 TTTGCAAAACACAAATAATTAATTAAATTAATGCTGTTTAGAAAACGTAACTAAAAAAATTATAT
193 TTCGCAAAACACAAATAAATAAATAAA-TAAAG-T-TTT-G--AA---AAC---AAAAA-TA-A-
** * * *
25182257 AAAATAAAATGGGAGGGTTGCAACATGAGGACTTCCCAGGAG
243 AAAATAAAATGTAAGGGGTGCAACACGAGGACTTCCTAGGAG
* * * * * * * * * *
25182299 GTCACTCGTCCTAGTACTACTCTCACCCAAGCACGCTTAATTGCGGAGTTCTGATGAGATTCGTT
1 GTCACCCATCCTAGTTCTACTCTTACCCAAGCATGCTTAACTACAGAGTTCTGATG-GATACGAT
** * * ** * *
25182364 GCATTAGTGCTGGTATGATTTCACCCATCAAATCTTGCATAAT-TATTTTACATAAAAGCTACTC
65 GCATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCTA-TTTACATAAAGGCTACCC
* *
25182428 CTTA-CTGCACTTGCACCTCGTATTTGAATGCAAATTT------ATAACGTTTCAAAAGATTTAT
129 CTTATC-GCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTTAT
* * * *
25182486 TTTGCAAAACGCAAATAAATAAATAATTAAATAATGTTTAGAAAATGCAAAAA-AAAGAAA-AGA
193 TTCGCAAAACACAAATAAAT--A-AA-TAAATAAAGTTTTGAAAA--CAAAAATAAA-AAATA-A
*
25182549 AA-GTAAGGGGTGCAACACGATGACTTCCTAGGAG
250 AATGTAAGGGGTGCAACACGAGGACTTCCTAGGAG
* * * * * * * * *
25182583 GTCACCTATACTAGTTCTACTCTCACCCAAGCATGCCTAATTGC-CAGTTCTGATACGAT-CTGG
1 GTCACCCATCCTAGTTCTACTCTTACCCAAGCATGCTTAACTACAGAGTTCTGAT-GGATAC-GA
* *
25182646 TGCATTAGTGCTGGTATGATCGCACCCGTTAATTCTTGCGCAATCTATTTACATAAAGGCTACCC
64 TGCATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCTATTTACATAAAGGCTACCC
* * * *
25182711 CTTATTGCACTTGCGCCTTGAATTTGAATGCAAATTTGACCAAATAACGTTTGAAAAGATTTCTT
129 CTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTTATT
* * *
25182776 TCGTAAAACGCAAATAAATAAACAAATAAAGTTTTGAAAACAAAAATAAAACAATAAAATGTAAG
194 TCGCAAAACACAAATAAATAAATAAATAAAGTTTTGAAAACAAAAATAAAA-AATAAAATGTAAG
** *
25182841 ATGTGCAACACGAGGACTTTCTAGGAG
258 GGGTGCAACACGAGGACTTCCTAGGAG
* * * * *
25182868 GTCACCCATCGTAGTTCTACCCTTGCCCAACCATGCTTAACTACGGAGTTCTGATAGGATACGAT
1 GTCACCCATCCTAGTTCTACTCTTACCCAAGCATGCTTAACTACAGAGTTCTGAT-GGATACGAT
* * * *
25182933 GCGTTAGTTCTGGTATGATCACACCCGTCAGTTCTTGCGCAATCTATTTATATAAAGGC-AGCCC
65 GCATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCTATTTACATAAAGGCTA-CCC
* * * ** *
25182997 CTTATCGCACTTACGCCTCGAATTTTAATCCAAATTTGAAAAAATAACATTTCAAAAGATTTATT
129 CTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTTATT
* * *
25183062 TAAG-AAAACACAAATAAATATTTAAATAAATGATGTTTTGAAAATGCAACTAAAAAATTTATAT
194 T-CGCAAAACACAAAT-AA-A--TAAATAAATAAAGTTTTG--AA---AAC--AAAAA--TA-A-
* * * * *
25183126 AAAATAAAATGTGAGGGGTGCAATACGAGTACATCATAGGAG
243 AAAATAAAATGTAAGGGGTGCAACACGAGGACTTCCTAGGAG
* * * * *
25183168 GTCACCCATCCTAGTCCTACT-TT-CGTCCAAGCGTGCTTAACTA-TGAGGTTCTGATGAAATTC
1 GTCACCCATCCTAGTTCTACTCTTAC--CCAAGCATGCTTAACTACAGA-GTTCTGATG-GATAC
* * * ** * * *
25183230 AACGCGTTAGTGCTCATATGATCTCACCCGTCAATTCTTGCGCAATCTATTTACAGAAAGCCT-C
62 GATGCATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCTATTTACATAAAGGCTAC
* * * * *
25183294 CTCCTCATCGCACTTGTGTCTCGAATTTTAATGCAAATTTGACCAAATAATGTTTCAAAAGATTT
127 C-CCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTT
* * **
25183359 ATTTCACAAAACACAAGTAAATATTTAAATAAA
191 ATTTCGCAAAACACAAATAAATAAATAAATAAA
25183392 TGATGTTTAG
Statistics
Matches: 1345, Mismatches: 248, Indels: 186
0.76 0.14 0.10
Matches are distributed among these distances:
281 2 0.00
282 156 0.12
283 110 0.08
284 78 0.06
285 86 0.06
286 148 0.11
287 5 0.00
288 7 0.01
289 42 0.03
290 15 0.01
291 7 0.01
292 7 0.01
293 5 0.00
294 37 0.03
295 8 0.01
296 11 0.01
297 21 0.02
298 32 0.02
299 153 0.11
300 232 0.17
301 158 0.12
302 23 0.02
303 2 0.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (284 bp):
GTCACCCATCCTAGTTCTACTCTTACCCAAGCATGCTTAACTACAGAGTTCTGATGGATACGATG
CATTAGTGCTGGTATGATCACACCCGTCAATTCTTGCGCAATCTATTTACATAAAGGCTACCCCT
TATCGCACTTGCGCCTCGAATTTGAATGCAAATTTGACCAAATAACGTTTCAAAAGATTTATTTC
GCAAAACACAAATAAATAAATAAATAAAGTTTTGAAAACAAAAATAAAAAATAAAATGTAAGGGG
TGCAACACGAGGACTTCCTAGGAG
Found at i:25195692 original size:300 final size:298
Alignment explanation
Indices: 25195088--25196288 Score: 1252
Period size: 300 Copynumber: 4.0 Consensus size: 298
25195078 AATAACATTT
* *
25195088 CTACCCCTTATCGCACTTGTGCCTCGAATTTGAATGCAAATTCGACCAAATAA-AGTTTCAAATG
1 CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAATAACA--TTCAAATG
** **
25195152 ATTTATTTCGCAAAACGTAAATAACTAATTAAATAAATGATGTTTAGAAAATGCAAATAAAAATA
64 ATTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACACAAATAAAAA-A
** * * * * * * * *
25195217 ATTATATAAAATCTAATGAGAGGGGTGCAACACAAAGAATTTCGAAAAGGTCATCCATCCTAGTA
128 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGAA-GTCACCCATCCTAGTA
* * * **
25195282 CTACTCTCTCCCAAGCACGCTTAACAATGAAGTTCTGATGGAATCCGGTGCATTAGTTTTGGTAT
192 CTACTCTCACCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTAT
* * *
25195347 TATCGGACTCGTCAATTCTTGTGCAATCTATTTACATAAAGG
257 AATCGCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
* * * ** ** *
25195389 CTACCCCTTATCACACTTGCGCCTCAAATTTGAATACAAATTTGACCAAATGGCATTCAATTGAT
1 CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAATAACATTCAAATGAT
* * * * * *
25195454 TTATTTTGCAAAACACAAATAACTATTTAAATACATGATGTGTAAAAAACACAATTAATAAAAAT
66 TTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACACAAATAA-AAAAAT
*
25195519 TATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGCAAGACACCCATCCTAGTACT
130 TATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAG-AAGTCACCCATCCTAGTACT
* * * *
25195584 GCTCTCACCCAAGCACGTTTAGCAATGGAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATAA
194 ACTCTCACCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATAA
* ** *
25195649 TCGCAC-CTGTTAATTCTTGCATAATCTGTTTACATAAAGG
259 TCGCACTC-GTCAATTCTTGCGCAATCTATTTACATAAAGG
* * *
25195689 CTACCGCTTATCGCACTTGCACCTCGAATTCT-AATG-AAATTTCAACCAAAGAACATTTCAAAT
1 CTACCCCTTATCGCACTTGCGCCTCGAATT-TGAATGCAAA-TTCAACCAAATAACA-TTCAAAT
* *
25195752 GATTTATTTCGCAAAACAAAAATAACTAATTAAATAAATGATGTTTAGAAAACGCAAATAAAAAA
63 GATTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACACAAATAAAAAA
* ** *
25195817 ATTATATAAAATAAAATGGGAGGGGTCCAACACGAGGACTTTCCGGGAGGTCACCCATCCTAGTA
128 ATTATATAAAATAAAATGGGAGGGGTGCAACACGAGGAC-TTCCCAGAAGTCACCCATCCTAGTA
* * ** *
25195882 CTACTCTCGCCCGAA-CACGCTTGACTGCTG-AGTTCTGATGGGATCCGGTGCATTAGTGCTGGT
192 CTACTCTCACCC-AAGCACGCTTAAC-AATGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGT
* ** ** * *
25195945 ATGATAACACTCGTCAACCCTTGCGCAATCTATTTATATAAACG
255 ATAATCGCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
* * * *
25195989 TTACCCCTTATTGCACTTGCGCCAT-GAATTTGAATGCAAATTCAACCAAATAACGTTTCAAATT
1 CTACCCCTTATCGCACTTGCGCC-TCGAATTTGAATGCAAATTCAACCAAATAAC-ATTCAAATG
* ** ** *
25196053 ATTTATTTCGCAAAACGCAAATAACTAATTAGTTAAACAATG-TT--------C--A-AAAAAAT
64 ATTTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACACAAATAAAAAAA
* * *
25196106 TTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATGCTACTAC
129 TTATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCC-AGAAGTCACCCATCCTAGTAC
* * * * * * * *
25196171 TGCTCTCATCCAGGCACGCTTAACTACGAAATTCTGATGGGATCCGATGCATTAGTGTTGGTATG
193 TACTCTCACCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATA
** * ** * * *
25196236 ATTACACCCGTCAACCCTTTCGCAATCTATTTATATAACGG
258 ATCGCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
25196277 CTACCCCTTATC
1 CTACCCCTTATC
25196289 TGTAATAGCC
Statistics
Matches: 757, Mismatches: 125, Indels: 49
0.81 0.13 0.05
Matches are distributed among these distances:
287 6 0.01
288 157 0.21
289 1 0.00
291 1 0.00
299 7 0.01
300 459 0.61
301 125 0.17
302 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.29
Consensus pattern (298 bp):
CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCAACCAAATAACATTCAAATGAT
TTATTTCGCAAAACACAAATAACTAATTAAATAAATGATGTTTAGAAAACACAAATAAAAAAATT
ATATAAAATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGAAGTCACCCATCCTAGTACTAC
TCTCACCCAAGCACGCTTAACAATGAAGTTCTGATGGGATCCGATGCATTAGTGCTGGTATAATC
GCACTCGTCAATTCTTGCGCAATCTATTTACATAAAGG
Found at i:25196680 original size:12 final size:12
Alignment explanation
Indices: 25196663--25196687 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25196653 GAAATTAGCT
25196663 AAAGGAAAAGAA
1 AAAGGAAAAGAA
25196675 AAAGGAAAAGAA
1 AAAGGAAAAGAA
25196687 A
1 A
25196688 GCCATATTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AAAGGAAAAGAA
Found at i:25206151 original size:71 final size:68
Alignment explanation
Indices: 25206032--25206253 Score: 260
Period size: 68 Copynumber: 3.3 Consensus size: 68
25206022 CACTTAGTAC
* *
25206032 CACTCATGCGACCTAGC--CGATTTA--TCT--CGTAGCTCTCTTGTCTACATGGTG-TCCTTCA
1 CACTCATGCGACCTAGCTAC-ATTTATCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-
*
25206090 CTTGGAAT
63 C--CGAAT
25206098 CACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCG
1 CACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCG
*
25206163 TAT
66 AAT
* * *
25206166 CACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTCTCTACATGGGATACATCCCG
1 CACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCG
*
25206231 TAT
66 AAT
* *
25206234 CACACATGTGACCTAGCTAC
1 CACTCATGCGACCTAGCTAC
25206254 TATATAGTAT
Statistics
Matches: 142, Mismatches: 7, Indels: 12
0.88 0.04 0.07
Matches are distributed among these distances:
66 17 0.12
67 5 0.04
68 89 0.63
69 3 0.02
70 2 0.01
71 26 0.18
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.32
Consensus pattern (68 bp):
CACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCCCG
AAT
Found at i:25206191 original size:68 final size:68
Alignment explanation
Indices: 25206096--25206253 Score: 289
Period size: 68 Copynumber: 2.3 Consensus size: 68
25206086 TTCACTTGGA
* * *
25206096 ATCACTCATGCGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTGTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTCTCTACATGGGATACATCC
25206161 CGT
66 CGT
25206164 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTCTCTACATGGGATACATCC
1 ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTCTCTACATGGGATACATCC
25206229 CGT
66 CGT
25206232 ATCACACATGTGACCTAGCTAC
1 ATCACACATGTGACCTAGCTAC
25206254 TATATAGTAT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 87 1.00
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.31
Consensus pattern (68 bp):
ATCACACATGTGACCTAGCTACATTTATCTCTCACGTAGCTCTCTTCTCTACATGGGATACATCC
CGT
Found at i:25209950 original size:46 final size:46
Alignment explanation
Indices: 25209900--25210075 Score: 182
Period size: 46 Copynumber: 3.8 Consensus size: 46
25209890 TGGTTGAGCA
25209900 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
25209946 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
25209991 CATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
25210039 -CCCAAGGTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25210076 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.06
46 58 0.53
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:25210056 original size:93 final size:93
Alignment explanation
Indices: 25209897--25210068 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
25209887 GGATGGTTGA
* *
25209897 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
25209962 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
25209990 GCATCCGAAGTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGGTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAA-CTCGTTGAG
*
25210054 TTGAGTTCGAGTTCG
65 TTGAGTCCGAGTTCG
25210069 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:25223865 original size:43 final size:42
Alignment explanation
Indices: 25223755--25223868 Score: 110
Period size: 41 Copynumber: 2.7 Consensus size: 42
25223745 NNNNNNNNNN
* * * * *
25223755 ATGTGATTACGTGT-AGACCATGTCTAGGACATCAGCGTCGT
1 ATGTGATTACATGTAAGACCACGTTTGGGACATCAGCATCGT
* *
25223796 ATTTGATT-CATGTAAGACC-CTATTTGGGACAGT-AGCATCGAT
1 ATGTGATTACATGTAAGACCAC-GTTTGGGACA-TCAGCATCG-T
25223838 ATGTGATTACATGTAAGACCACGTTTGGGAC
1 ATGTGATTACATGTAAGACCACGTTTGGGAC
25223869 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
40 4 0.07
41 25 0.43
42 9 0.16
43 19 0.33
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCACGTTTGGGACATCAGCATCGT
Found at i:25223969 original size:56 final size:56
Alignment explanation
Indices: 25223881--25224128 Score: 361
Period size: 56 Copynumber: 4.4 Consensus size: 56
25223871 TGGCATTGTA
*
25223881 CGATATGTGTGTGCGAGTAAGACCACGTTTAATATGTTGGCATCAATATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
* * *
25223937 CGATATGTGTGTGCGAGTAAGATCACGCTTAATACGTTGGCATCAATATGTGATAC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
* * * *
25223993 CGATATGTGTGTGCAAGTAAGACCATGTTTAATACGTTGGCATCGATATGTGATTT
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
* * * *
25224049 TGATATGTGTGTGCGAGTAAGACCACATTTAATACATTGGCATCGATATGTGATTC
1 CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
* **
25224105 CGATATGTGTTTATGAGTAAGACC
1 CGATATGTGTGTGCGAGTAAGACC
25224129 CTATCTAGGA
Statistics
Matches: 171, Mismatches: 21, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 171 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (56 bp):
CGATATGTGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
Found at i:25238365 original size:25 final size:24
Alignment explanation
Indices: 25238323--25238370 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
25238313 AAACTGAAAT
25238323 AGTATTAAATGAAAATAAAATAAAA
1 AGTATTAAATGAAAAT-AAATAAAA
*
25238348 AGTACTTAAA-GAAGATAAATAAA
1 AGTA-TTAAATGAAAATAAATAAA
25238371 GATAGAAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 7 0.33
25 9 0.43
26 5 0.24
ACGTcount: A:0.65, C:0.02, G:0.10, T:0.23
Consensus pattern (24 bp):
AGTATTAAATGAAAATAAATAAAA
Found at i:25244633 original size:21 final size:20
Alignment explanation
Indices: 25244590--25244633 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
25244580 ATTTCCCACG
* *
25244590 TTGGCCCGTTTTCTCTGTTT
1 TTGGCCCGTTTTCGCTCTTT
*
25244610 TTGGCTCGTTTCTCGCTCTTT
1 TTGGCCCGTTT-TCGCTCTTT
25244631 TTG
1 TTG
25244634 CCCTCCTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.00, C:0.25, G:0.20, T:0.55
Consensus pattern (20 bp):
TTGGCCCGTTTTCGCTCTTT
Found at i:25244855 original size:51 final size:51
Alignment explanation
Indices: 25244800--25244941 Score: 155
Period size: 51 Copynumber: 2.8 Consensus size: 51
25244790 ATGCGTACCC
* *
25244800 GATAGCTTTGATCACATGTGTGGTACTAAGTGCAGGCCACGCTGTGTAA-AA
1 GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACGCTGTG-AAGAA
* * **
25244851 GATAGTTTTTG-TCACAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAA
1 GATAG-CTTTGATCACAAGTGTGGTACTATGTGCAGGCCACGCTGTGAAGAA
* * *
25244902 GGTCGCTTTGA-CTACAAGGGTGGTACTATGTGCAGGCCAC
1 GATAGCTTTGATC-ACAAGTGTGGTACTATGTGCAGGCCAC
25244942 CGGGCATCTG
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
50 7 0.09
51 65 0.86
52 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (51 bp):
GATAGCTTTGATCACAAGTGTGGTACTATGTGCAGGCCACGCTGTGAAGAA
Found at i:25245362 original size:12 final size:11
Alignment explanation
Indices: 25245336--25245363 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
25245326 GAAAATAATT
25245336 AAAAATTGTAC
1 AAAAATTGTAC
25245347 AAAAATTGTAC
1 AAAAATTGTAC
25245358 AAAAAT
1 AAAAAT
25245364 GAGTCTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (11 bp):
AAAAATTGTAC
Found at i:25248831 original size:287 final size:287
Alignment explanation
Indices: 25248005--25249513 Score: 1789
Period size: 288 Copynumber: 5.3 Consensus size: 287
25247995 GTACCTCGAG
* * * *
25248005 TTTGAATGCAAATTCGACCAAAGAGCGTTTCAAATTATTTATTTCG-AAAAGCGCAAATAACTAA
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAA-CGAAAATAACTAA
* * *
25248069 TTAGCTAAACAATATTTAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGATG-ACT
65 TTAGTTAAACGATGTTT-AAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGA-GAACT
* * * *
25248133 TCCTAGGAGGACACCCATCCTAGTACTACTCTCACCCAAGCACGCTTCACTGCGGAGTTCTGATG
128 TCCTAGAAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* * * * * * * *
25248198 GGATCCCA-CGCATTAGTGCTAGTATAATTGCACTCATCAACTCTTGCGCAATTTATTTATATAA
193 GGAT-CCAGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAA
***
25248262 AGGCTACCCCTTATTGCACTTTTTCCTTGAA
257 AGGCTACCCCTTATTGCACTTGCGCCTTGAA
* * * * *
25248293 TTTGAATGCAAATTCAACAAAATAATGTTTCAAATAATTTATTTCGCAAAACAAAAATAACTAAT
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
* * *
25248358 TAGTTAAACGATGTTTAAAAATGATTATATGAAATAAAATGGGAGGGGTACAACACGAGGACTTC
66 TAGTTAAACGATGTTTAAAAA-AATTATATGAAATAAAATGGGAGGGGTGCAACACGAGAACTTC
* * * **
25248423 CTAAAAGGTCACCCATCCTAGTACAACTCTCTCCCAAGCACGCTTAGTTGCGGAGTTCTGATGGG
130 CTAGAAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
* * *
25248488 ATCCAGTACATTAGTGTTGGTACGATCGCACCCGTCAACTCTTGCACAATCTATTTATATAAAGG
195 ATCCAGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
25248553 CTACCCCTTATTGCACTTGCGCCTTGAA
260 CTACCCCTTATTGCACTTGCGCCTTGAA
* * * *
25248581 TTTGAATGCAAATTGGACTAAATAACGTTTTAAATGATTTATTTCGCAAAACAAAAATAACTAAT
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
* *
25248646 TA-TTGAAAC-AGTGTTTAAAAAAATTGTATGAAATAAAATGGGAGGGGTTCAACACGAGAACTT
66 TAGTT-AAACGA-TGTTTAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGAACTT
* * * * *
25248709 CCCACAAGGTCACCCATCCTAGTACTGCTCTCGCCCAAGCACACTTAACTGTGGAGTTCTGATGG
129 CCTAGAAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* * * * * * *
25248774 GATCTAATGCATTAGTGATGGAATGATCGCACCCGGCAACTCCTGCGCAAGCTATTTATATAAAG
194 GATCCAGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAG
* * *
25248839 GCTACCCATTATCGCACTTGCGCC-TCATA
259 GCTACCCCTTATTGCACTTGCGCCTTGA-A
* * * * * *
25248868 TTTGAATGCAAATTTGACCAAATAACATTTCAAATGATTTATTTTGCAAAATGCAAATAACAAAT
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
* * *
25248933 TAGTTAAACGATGTTTTAAAAAAATTATATCAAATGAAATGGGAGGGGTGCAACATGAGAACTTC
66 TAGTTAAACGATG-TTTAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGAACTTC
* * * * * * * * *
25248998 CCA-AGAGGTCACCTATCTTAGTACTACTCCTAG-CCGAGCATGCTTAGCTGCGGAGTTCTAATT
130 CTAGA-AGGTCACCCATCCTAGTACTACT-CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* * * * *
25249061 GGATCCGGTGTATTAGTGTTGGTATGATCGCACCCATCAACTCTTGCGTATTCTATTTATATAAA
193 GGATCCAGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAA
* * *
25249126 GGCTACCCCTTATCGCACGTGCGCTTTGAA
258 GGCTACCCCTTATTGCACTTGCGCCTTGAA
* * ** * * *
25249156 TTTGAATGCAAATTTGACCAAATAATGTTTCAAATGATTTATTTAACAAAATGTAAATAATTAAT
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
* * *
25249221 TAGTTAAATGATGTTTAAAAAACTTATATGAAATAAAA--GG-GGGGTGCAACACGAGGACTTCC
66 TAGTTAAACGATGTTTAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGAACTTCC
* * * * *
25249283 TAGGAGGTCACCCATTCTAGTACTACTCTCGCCCAAGCACGCTTCACTGCAGTGTTCTGATGGGA
131 TAGAAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
** ** * * * *
25249348 TCCAGCACATTTCTGTCGGTATGATCGCAGCCGTCAACTCTTGCACAATTTATTTATATAAAGGC
196 TCCAGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* *
25249413 TACCCCTTATTGCACTTGCACCTCGAA
261 TACCCCTTATTGCACTTGCGCCTTGAA
* * * * * * *
25249440 TCTGAATGTAAATTCGACTAAATAACGTTTCAAATGATTTATTTTGCAAAATGTAAATAATTAAT
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
25249505 TAGTTAAAC
66 TAGTTAAAC
25249514 TATAAAAAAT
Statistics
Matches: 1045, Mismatches: 161, Indels: 34
0.84 0.13 0.03
Matches are distributed among these distances:
283 3 0.00
284 206 0.20
285 2 0.00
286 2 0.00
287 271 0.26
288 552 0.53
289 9 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (287 bp):
TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
TAGTTAAACGATGTTTAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGAACTTCC
TAGAAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGA
TCCAGTGCATTAGTGTTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
TACCCCTTATTGCACTTGCGCCTTGAA
Found at i:25248901 original size:575 final size:572
Alignment explanation
Indices: 25248005--25249513 Score: 1891
Period size: 575 Copynumber: 2.6 Consensus size: 572
25247995 GTACCTCGAG
* * * *
25248005 TTTGAATGCAAATTCGACCAAAGAGCGTTTCAAATTATTTATTTCG-AAAAGCGCAAATAACTAA
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAA-CGAAAATAACTAA
* * *
25248069 TTAGCTAAACAATATTTAAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGATGACTT
65 TTAGTTAAACAGTGTTT-AAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGA-GACTT
* *
25248134 CCTAGGAGGACACCCATCCTAGTACTACTCTCACCCAAGCACGCTTCACTGCGGAGTTCTGATGG
128 CCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTCACTGCGGAGTTCTGATGG
* * * * * *
25248199 GATCCCACGCATTAGTGCTAGTATAATTGCACTCATCAACTCTTGCGCAATTTATTTATATAAAG
193 GATCCAACGCATTAGTG-TGGTATGATCGCACCCGTCAACTCTTGCGCAATTTATTTATATAAAG
*** * * * *
25248264 GCTACCCCTTATTGCACTTTTTCCTTGAATTTGAATGCAAATTCAACAAAATAATGTTTCAAATA
257 GCTACCCCTTATTGCACTTGCACC-TCAATTTGAATGCAAATTCGACAAAATAACGTTTCAAATG
* ** * *
25248329 ATTTATTTCGCAAAACAAAAATAACTAATTAGTTAAACGATG-TTTAAAAATGATTATATGAAAT
321 ATTTATTTTGCAAAATGAAAATAACTAATTAGTTAAACGATGTTTTAAAAA-AATTATATCAAAT
* *
25248393 AAAATGGGAGGGGTACAACACGAGGACTTCCTAAAAGGTCACCCATCCTAGTACAACTCTCT-CC
385 AAAATGGGAGGGGTACAACACGAGAACTTCCCAAAAGGTCACCCATCCTAGTACAACTC-CTACC
* * *
25248457 CAAGCACGCTTAGTTGCGGAGTTCTGATGGGATCCAGTACATTAGTGTTGGTACGATCGCACCCG
449 CAAGCACGCTTAGCTGCGGAGTTCTAATGGGATCCAGTACATTAGTGTTGGTACGATCGCACCCA
* *
25248522 TCAACTCTTGCACAATCTATTTATATAAAGGCTACCCCTTATTGCACTTGCGCCTTGAA
514 TCAACTCTTGCACAATCTATTTATATAAAGGCTACCCCTTATCGCACGTGCGCCTTGAA
* * * *
25248581 TTTGAATGCAAATTGGACTAAATAACGTTTTAAATGATTTATTTCGCAAAACAAAAATAACTAAT
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
* *
25248646 TA-TTGAAACAGTGTTTAAAAAAATTGTATGAAATAAAATGGGAGGGGTTCAACACGAGAACTTC
66 TAGTT-AAACAGTGTTTAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAG-ACTTC
* ** * * * *
25248710 CCACAAGGTCACCCATCCTAGTACTGCTCTCGCCCAAGCACACTTAACTGTGGAGTTCTGATGGG
129 CTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTCACTGCGGAGTTCTGATGGG
* * * * * **
25248775 ATCTAATGCATTAGTGATGGAATGATCGCACCCGGCAACTCCTGCGCAAGCTATTTATATAAAGG
194 ATCCAACGCATTAGTG-TGGTATGATCGCACCCGTCAACTCTTGCGCAATTTATTTATATAAAGG
* * * * * *
25248840 CTACCCATTATCGCACTTGCGCCTCATATTTGAATGCAAATTTGACCAAATAACATTTCAAATGA
258 CTACCCCTTATTGCACTTGCACCTCA-ATTTGAATGCAAATTCGACAAAATAACGTTTCAAATGA
* * *
25248905 TTTATTTTGCAAAATGCAAATAACAAATTAGTTAAACGATGTTTTAAAAAAATTATATCAAATGA
322 TTTATTTTGCAAAATGAAAATAACTAATTAGTTAAACGATGTTTTAAAAAAATTATATCAAATAA
* * * * * * * *
25248970 AATGGGAGGGGTGCAACATGAGAACTTCCCAAGAGGTCACCTATCTTAGTACTACTCCTAGCCGA
387 AATGGGAGGGGTACAACACGAGAACTTCCCAAAAGGTCACCCATCCTAGTACAACTCCTACCCAA
* * * ** *
25249035 GCATGCTTAGCTGCGGAGTTCTAATTGGATCCGGTGTATTAGTGTTGGTATGATCGCACCCATCA
452 GCACGCTTAGCTGCGGAGTTCTAATGGGATCCAGTACATTAGTGTTGGTACGATCGCACCCATCA
** * *
25249100 ACTCTTGCGTATTCTATTTATATAAAGGCTACCCCTTATCGCACGTGCGCTTTGAA
517 ACTCTTGCACAATCTATTTATATAAAGGCTACCCCTTATCGCACGTGCGCCTTGAA
* * ** * * *
25249156 TTTGAATGCAAATTTGACCAAATAATGTTTCAAATGATTTATTTAACAAAATGTAAATAATTAAT
1 TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
* *
25249221 TAGTTAAA-TGATGTTTAAAAAACTTATATGAAATAAAA--GG-GGGGTGCAACACGAGGACTTC
66 TAGTTAAACAG-TGTTTAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGA-GACTTC
* * *
25249282 CTAGGAGGTCACCCATTCTAGTACTACTCTCGCCCAAGCACGCTTCACTGCAGTGTTCTGATGGG
129 CTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTCACTGCGGAGTTCTGATGGG
* * ** * *
25249347 ATCCAGCACATTTCTGTCGGTATGATCGCAGCCGTCAACTCTTGCACAATTTATTTATATAAAGG
194 ATCCAACGCATTAGTGT-GGTATGATCGCACCCGTCAACTCTTGCGCAATTTATTTATATAAAGG
* * *
25249412 CTACCCCTTATTGCACTTGCACCTCGAATCTGAATGTAAATTCGACTAAATAACGTTTCAAATGA
258 CTACCCCTTATTGCACTTGCACCTC-AATTTGAATGCAAATTCGACAAAATAACGTTTCAAATGA
* *
25249477 TTTATTTTGCAAAATGTAAATAATTAATTAGTTAAAC
322 TTTATTTTGCAAAATGAAAATAACTAATTAGTTAAAC
25249514 TATAAAAAAT
Statistics
Matches: 793, Mismatches: 129, Indels: 26
0.84 0.14 0.03
Matches are distributed among these distances:
571 1 0.00
572 212 0.27
573 4 0.01
574 6 0.01
575 493 0.62
576 73 0.09
577 4 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.30
Consensus pattern (572 bp):
TTTGAATGCAAATTCGACCAAATAACGTTTCAAATGATTTATTTCGCAAAACGAAAATAACTAAT
TAGTTAAACAGTGTTTAAAAAAATTATATGAAATAAAATGGGAGGGGTGCAACACGAGACTTCCT
AGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTCACTGCGGAGTTCTGATGGGAT
CCAACGCATTAGTGTGGTATGATCGCACCCGTCAACTCTTGCGCAATTTATTTATATAAAGGCTA
CCCCTTATTGCACTTGCACCTCAATTTGAATGCAAATTCGACAAAATAACGTTTCAAATGATTTA
TTTTGCAAAATGAAAATAACTAATTAGTTAAACGATGTTTTAAAAAAATTATATCAAATAAAATG
GGAGGGGTACAACACGAGAACTTCCCAAAAGGTCACCCATCCTAGTACAACTCCTACCCAAGCAC
GCTTAGCTGCGGAGTTCTAATGGGATCCAGTACATTAGTGTTGGTACGATCGCACCCATCAACTC
TTGCACAATCTATTTATATAAAGGCTACCCCTTATCGCACGTGCGCCTTGAA
Found at i:25251840 original size:30 final size:30
Alignment explanation
Indices: 25251804--25251863 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25251794 CAGACGGGCA
25251804 GACACACAGGCGTAT-GTCTAGACCGTGTGT
1 GACACACAGGCGTATGGT-TAGACCGTGTGT
* * *
25251834 GACACACGGGCGTGTGGTTAGGCCGTGTGT
1 GACACACAGGCGTATGGTTAGACCGTGTGT
25251864 CCTCTGCACC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 24 0.92
31 2 0.08
ACGTcount: A:0.18, C:0.22, G:0.37, T:0.23
Consensus pattern (30 bp):
GACACACAGGCGTATGGTTAGACCGTGTGT
Found at i:25254247 original size:34 final size:34
Alignment explanation
Indices: 25254204--25254268 Score: 130
Period size: 34 Copynumber: 1.9 Consensus size: 34
25254194 CTCAATGGAT
25254204 TACCTAATGTGATTTTAGCAATATCAGCACAGAA
1 TACCTAATGTGATTTTAGCAATATCAGCACAGAA
25254238 TACCTAATGTGATTTTAGCAATATCAGCACA
1 TACCTAATGTGATTTTAGCAATATCAGCACA
25254269 AAAATATGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (34 bp):
TACCTAATGTGATTTTAGCAATATCAGCACAGAA
Found at i:25267801 original size:293 final size:290
Alignment explanation
Indices: 25267080--25268831 Score: 1721
Period size: 293 Copynumber: 6.1 Consensus size: 290
25267070 ATTTCTAATA
* * *
25267080 TAAACGATGTTTAACAAAAAATTATATGAAA-A-AAAATGGGATGGGTGCAACATGAGGACTTCC
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * *** ** * *
25267143 CAGGAGGACAGCCATCCTAGTACTACTTTCGCCCAAGCACGG-TTAGCTATAGAGCTCTGATAGA
66 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-GGCTCAACTGCGGAATTCTGATGGG
* * * * *
25267207 ATCCGGTGCATTAGTGCTTGTATGATTGCACCCGTCAACTCTTGAGCAATCTATTTATATAAAAG
130 ATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* *
25267272 CTACCCTTATCGCACTTGCGCCAT-GAATTTGAATGCAAATTCGACCAAATAAA-GTTTCAAATG
195 CTACCCTTATCGCACTTGCGCC-TCGAATTTGAATGCAAATTCGACCAAA-AAACATTTCAAGTG
* * *
25267335 ATTTATTTTGCAAAACAAAAATAATTAATTAGT
258 ATTTATTTCGCAAAACACAAATAACTAATTAGT
* * *
25267368 TAAACGATGTTTAACAAAAAATTATATG-AA-ATAAAATGGGATGGGTGCAACACGAGCACTTCC
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * * *
25267431 AAGTAGGTCACCTATCCTTGTACTACTCTCACCCAAGCACGCCTC-ACTGCGAAATTCTGATGGG
66 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA-GGCTCAACTGCGGAATTCTGATGGG
* * *
25267495 ATCCAGCGCATTAGTGC-AGGTATGATCACACCTGTCAACTCTTGCGCAATCTATTTATATAAAG
130 ATCCAGTGCATTAGTGCTA-GTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAG
* * * **
25267559 GCTACCCTTTATCGTAGTTGCACCTCGAATTTGAATGCAAATTCGACCAAAAAATGTTTCAAGTG
194 GCTACCC-TTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAAAACATTTCAAGTG
* *
25267624 ATTTATTTCACAAAACCCAAATAACTAATTAGT
258 ATTTATTTCGCAAAACACAAATAACTAATTAGT
* * *
25267657 TAAACAATGTTTACAAAAAGAAATTATATGAAATATAAAATGGGAGGGGTACAACACGAGGAATT
1 TAAACGATGTTTA-AAAAA-AAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTT
* * *
25267722 CCCTGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAGTTCAGATGG
64 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGG
* * * * *
25267787 GATCCGGTGCATTAGTTCTACTATGATCGCGCCCGTCAACTCTTGTGCAATCTATTTATATAAAG
129 GATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAG
** * * ** * *
25267852 GCTACCCGTTATCGCACTTGTACCTCAAATTCGAATAAAAATTTGACCAAATAACATTTCAAGTG
194 GCTACCC-TTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAAAACATTTCAAGTG
* * * *
25267917 ACTTATTTCGTAGAACACAAAGAACTAATTAGT
258 ATTTATTTCGCAAAACACAAATAACTAATTAGT
* * *
25267950 TAAACGATGATTAAAAAAAAGAAATTATATGAAATATAAAATGGAAGGGGTGCAACATGAGGACT
1 TAAACGATG-TT-TAAAAAA-AAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACT
* * ** * **
25268015 TCCCAGGAGGTCACCCATCCTAGTACTACTCTTG-CCAATCACACTTAACTATGGAATTCTGATG
63 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATG
* * *
25268079 GGATCCATTGCATTAGTGCTAGTATGATCGTACCCGTCAACTC-T-AGC-A-C----------AA
128 GGATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAA
* * *
25268130 ---T---C-TATCGCACTTACGCCTCGAATTTGAATGAAAATTCGA-CAAAATAACAATTCAAGT
193 GGCTACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAA-AACATTTCAAGT
* * * *
25268187 TATTTATTTTGCAAAATACAAATAACGAATTAGT
257 GATTTATTTCGCAAAACACAAATAACTAATTAGT
* * * * * *
25268221 TAAACGATGTTTAAAAAATAATTTTTTTGAAATATAAAATGGGAGAGGTGCAACATGACGACTTC
1 TAAACGATGTTTAAAAAA-AAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTC
* * * * *
25268286 CCAGGAGGTCAGCCATCCTAGTACTACTC-AGCCCAAGCACGCCCAACTGCGGAGTTCTGATGGG
65 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGGG
* * * * * * *
25268350 ATCCAATGCAATAGTGCTGGAATGATCACACCCGTCAACTCTTGCGCAATTTACTTATATAAAGG
130 ATCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* * * *
25268415 CTACCCCTTATCGCACTTGCGCCTTGAATTTGAATACAAATTCGACCAGATAACATTTCAAGTGA
195 CTA-CCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAAAACATTTCAAGTGA
* * *
25268480 TTTATTTC-AAAAAAATGCAAATGACTAATTAGT
259 TTTATTTCGCAAAACA--CAAATAACTAATTAGT
** * * * *
25268513 TAAATTATTTTTTAAAAAAATTTATATGAAATATAAAATGGAAGGGGTGCAACAC---G------
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
* * * * * *
25268569 -AGGAGGTCACCCATCCTACTACTACTATCGCCCAAGCATGCTTAAGTGTGGAATTCTGATGGGA
66 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGGGA
* * * * * * * *
25268633 TCCGGTGCATTAGTGCTAGTAAGATCGTACCTGTCAAATCTTG-TCAATCTATTCATAAAAAGGC
131 TCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
* * *
25268697 TACTTCTTATCGCACTTGCGCCTCAAATTTGAATGCAAATTCGACCAAATAAA-ATTTAAAGTGA
196 TAC-CCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAA-AAACATTTCAAGTGA
* *
25268761 TTTAATTC-CTAAAACGA-AAATAACGAATTAGT
259 TTTATTTCGC-AAAAC-ACAAATAACTAATTAGT
*
25268793 TAAACGATG-TTCAAAAAAAATTATATGAAATATAAAATG
1 TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATG
25268832 TGTAACACCC
Statistics
Matches: 1209, Mismatches: 209, Indels: 101
0.80 0.14 0.07
Matches are distributed among these distances:
268 1 0.00
269 134 0.11
270 7 0.01
271 78 0.06
272 1 0.00
273 1 0.00
276 1 0.00
279 30 0.02
280 20 0.02
281 99 0.08
282 68 0.06
283 3 0.00
286 1 0.00
287 3 0.00
288 167 0.14
289 89 0.07
290 11 0.01
291 96 0.08
292 38 0.03
293 279 0.23
294 81 0.07
295 1 0.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (290 bp):
TAAACGATGTTTAAAAAAAAATTATATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCC
CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAGGCTCAACTGCGGAATTCTGATGGGA
TCCAGTGCATTAGTGCTAGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGC
TACCCTTATCGCACTTGCGCCTCGAATTTGAATGCAAATTCGACCAAAAAACATTTCAAGTGATT
TATTTCGCAAAACACAAATAACTAATTAGT
Found at i:25268346 original size:269 final size:271
Alignment explanation
Indices: 25267874--25268391 Score: 673
Period size: 269 Copynumber: 1.9 Consensus size: 271
25267864 CGCACTTGTA
* * * * *
25267874 CCTCAAATTCGAATAAAAATTTGACCAAATAACATTTCAAGTGACTTATTTCGTAGAACACAAAG
1 CCTCAAATTCGAATAAAAATTCGACAAAATAACAATTCAAGTGACTTATTTCGCAAAACACAAAG
* *
25267939 AACTAATTAGTTAAACGATGATTAAAAAAAAGAAATTATATGAAATATAAAATGGAAGGGGTGCA
66 AACGAATTAGTTAAACGATGATTAAAAAAAAGAAATTATATGAAATATAAAATGGAAGAGGTGCA
* * * ** *
25268004 ACATGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCAATCACACTTAACTATGG
131 ACATGACGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAGCCAAGCACACCCAACTACGG
* * * **
25268069 AATTCTGATGGGATCCATTGCATTAGTGCTAGTATGATCGTACCCGTCAACTCTAGCACAATCTA
196 AATTCTGATGGGATCCAATGCAATAGTGCTAGAATGATCACACCCGTCAACTCTAGCACAATCTA
25268134 TCGCACTTACG
261 TCGCACTTACG
* * * * * * * *
25268145 CCTCGAATTTGAATGAAAATTCGACAAAATAACAATTCAAGTTATTTATTTTGCAAAATACAAAT
1 CCTCAAATTCGAATAAAAATTCGACAAAATAACAATTCAAGTGACTTATTTCGCAAAACACAAAG
* * * * * *
25268210 AACGAATTAGTTAAACGATG-TT-TAAAAAATAATTTTTTTGAAATATAAAATGGGAGAGGTGCA
66 AACGAATTAGTTAAACGATGATTAAAAAAAAGAAATTATATGAAATATAAAATGGAAGAGGTGCA
* * *
25268273 ACATGACGACTTCCCAGGAGGTCAGCCATCCTAGTACTACTC-AGCCCAAGCACGCCCAACTGCG
131 ACATGACGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAG-CCAAGCACACCCAACTACG
* *
25268337 GAGTTCTGATGGGATCCAATGCAATAGTGCTGGAATGATCACACCCGTCAACTCT
195 GAATTCTGATGGGATCCAATGCAATAGTGCTAGAATGATCACACCCGTCAACTCT
25268392 TGCGCAATTT
Statistics
Matches: 209, Mismatches: 37, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
268 1 0.00
269 135 0.65
270 2 0.01
271 71 0.34
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (271 bp):
CCTCAAATTCGAATAAAAATTCGACAAAATAACAATTCAAGTGACTTATTTCGCAAAACACAAAG
AACGAATTAGTTAAACGATGATTAAAAAAAAGAAATTATATGAAATATAAAATGGAAGAGGTGCA
ACATGACGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAGCCAAGCACACCCAACTACGG
AATTCTGATGGGATCCAATGCAATAGTGCTAGAATGATCACACCCGTCAACTCTAGCACAATCTA
TCGCACTTACG
Found at i:25269506 original size:6 final size:6
Alignment explanation
Indices: 25269485--25269582 Score: 58
Period size: 6 Copynumber: 15.8 Consensus size: 6
25269475 TATTAGATCT
* * * *
25269485 AGAATC AAAATG AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC
* * *
25269534 AG-ATGAC AAAATC AGAATC AGTACC AGGTAAT- AGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
25269583 GTGAATGCAA
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
5 6 0.09
6 53 0.77
7 6 0.09
8 4 0.06
ACGTcount: A:0.49, C:0.13, G:0.19, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:25269526 original size:19 final size:19
Alignment explanation
Indices: 25269502--25269554 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
25269492 AAATGAGAAT
*
25269502 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGATGA
*
25269521 CAGAATCAGAATTAGATGA
1 CAGAATCAGAATCAGATGA
*
25269540 CAAAATCAGAATCAG
1 CAGAATCAGAATCAG
25269555 TACCAGGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.17
Consensus pattern (19 bp):
CAGAATCAGAATCAGATGA
Found at i:25269528 original size:25 final size:25
Alignment explanation
Indices: 25269497--25269582 Score: 76
Period size: 25 Copynumber: 3.7 Consensus size: 25
25269487 AATCAAAATG
25269497 AGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGGTGAC
*
25269522 AGAATCAGAAT-----T-AGATGAC
1 AGAATCAGAATCAGAATCAGGTGAC
* * * * *
25269541 AAAATCAGAATCAGTACCAGGTAAT
1 AGAATCAGAATCAGAATCAGGTGAC
25269566 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
25269583 GTGAATGCAA
Statistics
Matches: 46, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
19 16 0.35
20 1 0.02
25 29 0.63
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGGTGAC
Found at i:25269737 original size:27 final size:26
Alignment explanation
Indices: 25269700--25269766 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
25269690 AGCATGGCTG
*
25269700 CCAGAACAGATATTGTGATAGAATCA
1 CCAGAACAGATATTGTGATAGAACCA
* *
25269726 CCAGATACAGATATTGTGGTAGAGCCA
1 CCAGA-ACAGATATTGTGATAGAACCA
*
25269753 CCAGAACAAATATT
1 CCAGAACAGATATT
25269767 TATGGCATAG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
26 13 0.36
27 23 0.64
ACGTcount: A:0.40, C:0.18, G:0.19, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGATAGAACCA
Found at i:25269994 original size:22 final size:22
Alignment explanation
Indices: 25269966--25270030 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
25269956 GCAAATATGT
*
25269966 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
25269988 TTGGCACAGATCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
25270010 TTGGCGCAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
25270031 AATAATTGGC
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
21 2 0.06
22 30 0.88
23 2 0.06
ACGTcount: A:0.31, C:0.23, G:0.25, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:25270496 original size:27 final size:27
Alignment explanation
Indices: 25270466--25270605 Score: 199
Period size: 27 Copynumber: 5.2 Consensus size: 27
25270456 GGCAAAATGG
* *
25270466 TAATTTTACCCTACAAGGGTATCTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
25270493 TAATTCTACCTTACAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
25270520 TATTTCTACCCTACAAGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
*
25270547 TAATTCTACCCTATAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
25270574 TAATTCTACCCTACAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
25270601 TAATT
1 TAATT
25270606 TTGTAAATCG
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 100 1.00
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:25270631 original size:81 final size:81
Alignment explanation
Indices: 25270459--25270634 Score: 196
Period size: 81 Copynumber: 2.2 Consensus size: 81
25270449 CCCTAGGGGC
* * *
25270459 AAAATGGTAATTTTACCCTACAAGGGTATCTCGATAATTCTACCTTACAGGGGTATTTCGGTATT
1 AAAATGGTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATATT
**
25270524 TCTACCCTACAAGGGT
66 TCTACAATACAAGGGT
** * *
25270540 -ATTTCGGTAATTCTACCCTATAAGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGATAA
1 AAAAT-GGTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGAT-A
* *
25270604 TTTTGTA-AAT-CGAGGGT
64 -TTTCTACAATACAAGGGT
*
25270621 AAAATAGTAATTCT
1 AAAATGGTAATTCT
25270635 GTAAATCGGA
Statistics
Matches: 77, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
80 2 0.03
81 66 0.86
82 4 0.05
83 5 0.06
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (81 bp):
AAAATGGTAATTCTACCCTACAAGGGTATCTCGATAATTCTACCCTACAGGGGTATTTCGATATT
TCTACAATACAAGGGT
Found at i:25272854 original size:291 final size:290
Alignment explanation
Indices: 25271555--25278839 Score: 8744
Period size: 291 Copynumber: 25.0 Consensus size: 290
25271545 AGGGTGTTAC
* * * * * *
25271555 AAAATGGGACGGGTGCAACATGAGGACTT-CCAGGAGGTCACCCATCCTAGCACTACTCTCGCTC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* ** * * * * * *
25271619 GAGCACTATTAATTGCAGAGTTCTGATGGGATCCAGTGCATTATTGTTGGTATGATCGCACCCCT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* *
25271684 CAACCCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * *
25271749 TCAAATTCTACCGAATAACATTTCAAGTGATTTATTTCATAAAACGCAAATAACTAATTAGTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25271814 ACAATGTTTAAAAAAACTGTATATGAAATAT
261 ACAATGTTTAAAAAAAAT-TACATGAAATAT
* * * * * *
25271845 AAAATGGAAGGGGTGCAACACGAGGATTTCCCAAG-GAGTTACCCTTCTTAGTACTACTCTCACC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAG-GTCACCCATCCTAGTACTACTCT-AGC
* * * ** * * * ** * *
25271909 CCAA-CATGATTTACTATGAAGTTCTGAAGGGATCTGGTATATTAGTGCTGGTATGATTGCAACC
64 CCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC
* ** *
25271973 TTCAACTCTTGCGCAATCTATTTATATAAAAACTTCCCCTTATCGCACTTGCGCCTCAAATTTGA
129 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGA
** * * * * * *
25272038 AAGCAAATTCGACCAAAATAACGATTCATGTGATTTCTTTAGTAAAACGCATATAACTACTTAGT
194 ATTCAAATTCGACC-AAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGT
** *
25272103 TAAATGATGTTT-AAAAAAATTATATGAAATAT
258 TAAACAATGTTTAAAAAAAATTACATGAAATAT
* * *
25272135 AAAATAGGAGTGGTGCAACTCGAGGACTTACCCAA-AGGTCACCCATCCTAGTACTACTCTAGCC
1 AAAATGGGAGGGGTGCAACACGAGGACTT-CCCAAGAGGTCACCCATCCTAGTACTACTCTAGCC
* * * * * ** *
25272199 CAAGCACGCTTAACTGCAGAGTTTTGATGGTATTCGGTGCATTAGTGCTGGTATAATCTAACCAG
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
** * * * *
25272264 TCAACTCCCGCGCACTCTATTTATATCAAGGCTACCCCTTATCACACTTGCGCCTCATATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* *
25272329 TTCAAATTTGACCAAATAACGTTTGAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* *
25272394 AACGATGTTT-AAAAAAATTGCATGAAATAT
260 AACAATGTTTAAAAAAAATTACATGAAATAT
* * * * * * *
25272424 AGAATAGGAGGGGTGCCACCCGAGGACTTCCCAAGAGGTCACCCATCCGAGTACAACTCTAGCAC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * *
25272489 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTACATTAGTACTGGTATGATCGCACCCGC
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * *
25272554 CAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * *
25272619 TCAAATTCGACTAAATAAAGTTTCAAGTAATTTATTTCATAAAACGCAAATAACTAATTACTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
*
25272684 ACTATGTTTAAAAATAAATTACATGAAATAT
261 ACAATGTTTAAAAA-AAATTACATGAAATAT
* * * *
25272715 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCTTAGTACAACTCTAGCCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* ** * * * * * *
25272780 AAGCATGCTTAACTATGGAGTTCTAATGGGATCGGGTGCATTCGTGCTTGTATGACCGCACCTGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * * *
25272845 CAGCTCTTGCACATTATATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * *
25272910 TCAAATTCAACCAAATAACGTTTCAAGTCATTTATTTCGTAAAACGCAAATAACAAATTAGTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25272975 ACGATGCTTAAAAATAAATTACATGAAATAT
261 ACAATGTTTAAAAA-AAATTACATGAAATAT
* * * * * * * *
25273006 AAAATAGGAGGGGTGCAACACGAGAAATTCCCAAGAGATCACCCGTCCCAGTACTACTCTTGCCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * *
25273071 AAGCACGCTTAACTGTGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATCATTGCACACGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGA-T-CGCAC--
*
25273136 CAACGTCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGCGCCTCAAAT
127 C--CGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAAT
* * * * *
25273201 TTGAATTCAAATTTGACCAAATAACGTTTCAAGCGATTTTTTTTCGTAAAACACAAATAAGTAAT
190 TTGAATTCAAATTCGACCAAATAACGTTTCAAGTGA-TTTATTTCGTAAAACGCAAATAACTAAT
*
25273266 TAGTTAAACTATGTTTAAAAAACAAAAAAGATTACATGAAATAT
254 TAGTTAAACAATGTTT-----A-AAAAAA-ATTACATGAAATAT
* * *
25273310 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGATCACCCATCCTACTACTACTCTTGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* ** * * ** *
25273375 AAGCACGCTTAACTGCGGAGTTTTGATGGGATCTAGTGCATTAGTCCTGGTATAATCTAACTCGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * ** *
25273440 CAACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCTCACTTATGCCTCAAATTTGAAA
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * *
25273505 TCAAATTCAACCAAATAACATTTCAAGTGATTTATTTCGTAAAACACAAATAACTAATTAGTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25273570 ACGATG-TT--AAAAAATTACATAAAATAT
261 ACAATGTTTAAAAAAAATTACATGAAATAT
* * * *
25273597 AAAATGGGAGGGATGCAACGCGAGGAATTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAG-C
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT-AGCC
* ** * * * * *
25273661 CAAGTACATTTAACTGCAGAGTTCTAATGGGATCCGATGCATTAGTGCTAGTATCATCGCACCCG
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * * *
25273726 TAAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGCACCTTAAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * * * *
25273791 TTCAAATTCGACCAAGTAAC-TTTCAAGCGATTTAATTCATAAAACACAAATAACGAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
25273855 AACAATGTTT-AAAAAAATTACATGAAATAT
260 AACAATGTTTAAAAAAAATTACATGAAATAT
* * * * * * *
25273885 AAAATGGGAAGGGTGCAACCCAAGGACTTCCCAGGAAGTCACCCATCCGAGTACAACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * * *
25273950 AAGAACGCTTAACTGCGGAGTTCTGACGGGATCCAGTACATTAGTACTGGTATGATCGCACTCGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * **
25274015 CAACTCTTGCGCATTCTATTTATATAAAGGCTACCTCTTATCGCACTTGCGCCTTGAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * *
25274080 TCAAATTCGACTAAATAACATTTCAAGTAATTTATTTCGTAAAATGCAAATAACTAATTACTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
*
25274145 ACTATGTTTAAAAACAAATTACATGAAATAT
261 ACAATGTTTAAAAA-AAATTACATGAAATAT
* * * * * * **
25274176 AAAATAGGAGGGCTTCAACACGAGGACTTCCCAAGAAGTCACCCGTCCTAGTACAACTCTAGCTG
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * *
25274241 GAGCACGCTGAACTACGGAGTTCTGATGGGATCGGGTGCATTAGTGCTTGTATGATCGC-CCCTG
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCC-G
* ** * * * * * * **
25274305 TCAGCTCTTGTACATTATATTTGTATAAAGGCAACCCCTTATCGCACTTGAGCATTGAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * **
25274370 TTCAAATTCAACCGAATAATGTTTCACCTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* *
25274435 AACAATGCTTAAAAATAAAGTACATGAAATAT
260 AACAATGTTTAAAAA-AAATTACATGAAATAT
* * * * * * * *
25274467 AAAAAGGGAGAGGTGCAACACGAGGAATTCCCAAGAGATCACCCGTCCCAGTACTACTCTTGCCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * * *
25274532 AAGAACACTTAACTGTGGTGTTC-GAATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACACG
66 AAGCACGCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
25274596 TCAACTCTTACGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGTGCCTCAAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * *
25274661 TTCAAATTCGACCAAATAACGTTTCAAGCGATTTTTTTCGTAAAACACAAATAACTAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* *
25274726 AACAATGTTCAAAAAACAAAAAAATTACACGAAATAT
260 AACAATGTT-----TA-AAAAAAATTACATGAAATAT
* *
25274763 AAAATGGGAGGGGTGCAACAGGAGGACTTCCCAAGAGATCA-CCATCCTAGTACTACTCTCA-CC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT-AGCC
* * * * * * ** *
25274826 CAAGCACGTTTAACTGCAGAGTTTTGATGGGATCTGGTGCATTACTGCTGGTATAATCTAACTCG
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
25274891 TCAACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATTGCACTTGTGCCTCAAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * * *
25274956 ATCAAATTCAACCGAATAACATTTCAAGCGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* * *
25275021 AACGATGTTT--ACAAAATTACATAAAATAT
260 AACAATGTTTAAAAAAAATTACATGAAATAT
* * * *
25275050 AATATAGGAGGGGTGCAACGCGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAG-C
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT-AGCC
** * * * * *
25275114 CAAGCACATTTAACTGCAGAGTTCTAATGGGATCCGATGCATTAGTGCTAGTATCATCGCACCCG
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* *
25275179 TCAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCGCTTGCGCCTCAAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * * *
25275244 TTCAAATTCGACCAAGTAACGTTTCAAATGATTTATTTCATAAAACACAAAAAACTAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
25275309 AACAATGTTTAAAAGTAAAACAATTACATGAAATAT
260 AACAATGTTT--AA--AAAA-AATTACATGAAATAT
* * * * *
25275345 AAAATGGGAGCGGTGCAACACGAGGGCTTCCCAAGAGATCACCCATCGTAGTACTGCTCTCA-CC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT-AGCC
* * * * * * * * **
25275409 CAAGCACGCTTAACTACGGGGTTTTGATGGGATCTGGTGCATTAGGGTTAGTATAATCTAACCCG
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * *
25275474 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCACACTTGTGCCTCGAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * *
25275539 TTCAAATTTGATCAAATAACGTTTCAAGTGATTTATTTCGAAAAACGCAAATAACTAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
25275604 AACAATG-TTAAAAAAAATTACATGAAATAT
260 AACAATGTTTAAAAAAAATTACATGAAATAT
** * * *
25275634 AAAATAAGAGGGGTGCAACACGAGGAATTCCCAGGAGGTCACCCATCCTAATACTACTCTCAG-C
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT-AGCC
* * * *
25275698 CAAGCACGCTTACCTTCGGAGTTCTGATGGGATCCGGTTCATTAGTGCTGGTA-GCATCGCTCCC
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG-ATCGCACCC
* * * * *
25275762 ATCAACTCGTGCGCAATCTATTTATGTAAAAGCTACCCCTTATCACACTTGCGCCTCAAATTTGA
129 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGA
* *
25275827 ATTCAAATTCAACCAAATAACGTTTCAAGCGATTTATTTCGT-AAACGCAAATAACTAATTAGTT
194 ATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTT
* *
25275891 AAACAATCTTTAAAACACACAAAAAATTACATGAAAAAT
259 AAACAATGTTT-----A-A-AAAAAATTACATGAAATAT
* * ** *
25275930 ATAATGGGAGGGGTGCAACACGAAGACTTCCCGTGAGGTCATCCATCCTAGTACTACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * **
25275995 AAGCACGCTTAACTGCAGAGATT-TGATGGGATTCGGTGCATTAGTGCTGGTATAATCTAACCCG
66 AAGCACGCTTAACTGCGGAG-TTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* * * * * **
25276059 TCAACTCTCGTGCACTCTATTTATATAAAGGCTACCCCTTATCGCATTTGCGCCTCGAATAGGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * *
25276124 TTCAAATTTGACCAAATAACAG-TTCAAGTGATTTATTTTGTAAAATGCAAATAACTAATTAGTT
195 TTCAAATTCGACCAAATAAC-GTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTT
*
25276188 AAACGATGTTT-AAAAAAATTACATGAAATAT
259 AAACAATGTTTAAAAAAAATTACATGAAATAT
* * * * *
25276219 AAAATGGGAGTGGTGCAGCACGAGGACTTCCCAGGAGGTCACCCATCCGAGTACAACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
** * * * *
25276284 AAGCACGCTTAACTTTGGAGTTCTGGTGGGATTCGGTACATTAGTACTGGTATGATCGCACCCGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * *
25276349 CAACTCTCGCACATTCTATTCATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * *
25276414 TCAAATTCGACTAAATAACATTTCAAGTAATTTATTTCGTAAAACGCAAATAAGTAATTACTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25276479 ACTATGTTTACAAATAAATTACATGAAATAT
261 ACAATGTTTA-AAAAAAATTACATGAAATAT
* * * * * * *
25276510 AAAATAGGAGGGGTGCAACATGAGAACTTCCCATGAGGTCACACATCCTAGTACAACTGTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * * *
25276575 AGGCACGCTTAACTACGGGGTTCTGATGGG-TTCGAGTGCATTAGTGCTTGTATGATCGCACCTG
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCG-GTGCATTAGTGCTGGTATGATCGCACCCG
* * * *
25276639 TCAACTCTTGCGCATTATATTTATATAAAGGCTATCCCTTATCGCACTTGCGCCTCGAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * *
25276704 TTCAAATTCAACCAAATAACGTTTCAAGTGTTTTATTTCATAAAATGCAAATAACTAATTAGTTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
*
25276769 AACGATGTTTAAAAATAAATTACATGAAATAT
260 AACAATGTTTAAAAA-AAATTACATGAAATAT
* * * * * *
25276801 AAAATGGGAGGGGTGCAACACGAGGAATTCCCAAGAGATCACCCGTCCCAGTACTACTCTTGCCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * * *
25276866 AAGCATGCTTATCTGTGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACACGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* *
25276931 CAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTTTCGCACTTGCGCCTCAAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * *
25276996 TGAATTTCGACCAAATAACATTTCAAGTGATTT-TTTCGTAAAACACAAATAACTAATTAGTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
*
25277060 ACAATGTTTAAAAAACAAAAAAAAATACATGAAATAT
261 ACAATGTTT-------AAAAAAAATTACATGAAATAT
* * * *
25277097 AAAATGGGAGGGGTGCAACACGAGGGCTTCCCAAGAGATCACCCATCCTAGTACTGCTCTCGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * ** *
25277162 AAGCACGCTTAACTGCGGAGTTTTGATGGGATCTGGTGCATTAGTGCTGGTATAATCTAACTCGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * * * *
25277227 CAACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCGCACTTGTGCCTCGAATTAGAAA
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * *
25277292 TCACATTCAACCAAATAACGTTTCAAGTGATTTATTTCATAAAACGCTAATAACTAATTAGTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25277357 ACGATG-TT-AAAAAAATTACATAAAATAT
261 ACAATGTTTAAAAAAAATTACATGAAATAT
* * *
25277385 AAAATGAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCA-CC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT-AGCC
** * ** * * * * * *
25277449 CAAGCACATTTAACTACAAAGTTCTAATGGGATCCGATGCATTAGAGCTAGTATCATCGCACCTG
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCG
* *
25277514 TCAACTCTTGCGCAATCTATTTATGTAAAGGCTACGCCTTATCGCACTTGCGCCTCAAATTTGAA
130 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * * * *
25277579 TTCAAATTCGACCAAGTAATGTTTCAAGCGATTTATTTCATAAAACACAAATAACTAATTAATTA
195 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
*
25277644 AACTATGTTTAAAAAAAAATTACATGAAATAT
260 AACAATGTTT-AAAAAAAATTACATGAAATAT
* * * * *
25277676 AAAATGGGAGAGGTGCAACACGAGGACTTCCCAGGTGATCACCCATCCTAGTACTACTCTCGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * * **
25277741 AAGCACGCTTAACTACGGAGTTTTGATGGGATCTGGTGCATTAGTGCTAGTATAATCTAACCCGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* *
25277806 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGTGCCTCGAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * *
25277871 TCAAATTTGATCAAATAACGTTTCAAGTGATTTATTGCGAAAAACGCAAATAACTAATTAGTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
*
25277936 ACGATG-TT-AAAAAAATTACATGAAATAT
261 ACAATGTTTAAAAAAAATTACATGAAATAT
** * * * * * *
25277964 AAAATAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATACAAATACTACTCTCTG-C
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCT-AGCC
* * * * * * *
25278028 CAAGCATGCTTACCTTCGGAGTTTTGATGGGATCTGGTGCATTAGTTCTAGTA-GCATCGCACCC
65 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATG-ATCGCACCC
* * ** * *
25278092 GTCAACTCTTGCGCAATCTATTTATGTAAAAGCTACCCCTTATCATACGTGTGCCTCAAATTTGA
129 GTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGA
* * *
25278157 ATTCAAATTCGACCAAATAACATTTCAAGCGATTTATTTCGT-AAACGCAAATAACTAAATAGTT
194 ATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTT
* *
25278221 AAAAAATGTTTAGAACACAAAAAAATTACACGAAATAT
259 AAACAATGTTT-----A-AAAAAAATTACATGAAATAT
* * *
25278259 ATAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGCCACCCATCCTAGTACTACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * **
25278324 AAGCATGCTTAACTGCGGAGTTTTGATGGGATTCGGTGCATTAGTGCTGGTATAATCTAACCCGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* * *
25278389 CAACTCTTGCGCAATCCATTTATGTAAAGGCTACCCCTTATCGTACTTGCGCCTCAAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * * *
25278454 TCAAATTCGACCAAGTAACATTTCAAGCGATTTATTTCATAAATCACAAATAACTAATTAGTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
25278519 ACAATGTTT-AAAAAAATTACATGAAATAT
261 ACAATGTTTAAAAAAAATTACATGAAATAT
* * * * * *
25278548 AAAAGGGGAAGGGTGCAACCCGAGGACTTCCCAGGAGGTCACCCATCCGAGTACAACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
* * * * *
25278613 AAGCATGCTTAACTGCGGAGTTCTGATGAGATCCGGTACATTAGTACTGGAATGATCGCACCCGT
66 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
* *
25278678 CAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
131 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * *
25278743 TCAAATTCGACTAAATAACGTTTCAAGTAATTTATTTCGTAAAATGCAAATAACTAATTACTTAA
196 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
*
25278808 ACTATGTTTAAAAATAAATTACATGAAA-AT
261 ACAATGTTTAAAAA-AAATTACATGAAATAT
25278838 AA
1 AA
25278840 TAAGTAATTT
Statistics
Matches: 5991, Mismatches: 902, Indels: 204
0.84 0.13 0.03
Matches are distributed among these distances:
286 46 0.01
287 274 0.05
288 910 0.15
289 1075 0.18
290 257 0.04
291 1722 0.29
292 61 0.01
293 4 0.00
294 7 0.00
295 668 0.11
296 510 0.09
297 200 0.03
298 126 0.02
302 3 0.00
303 4 0.00
304 124 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (290 bp):
AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCCTAGTACTACTCTAGCCC
AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT
CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
ACAATGTTTAAAAAAAATTACATGAAATAT
Found at i:25277823 original size:579 final size:579
Alignment explanation
Indices: 25271555--25278839 Score: 8785
Period size: 579 Copynumber: 12.5 Consensus size: 579
25271545 AGGGTGTTAC
* * *
25271555 AAAATGGGACGGGTGCAACATGAGGACTT-CCAGGAGGTCACCCATCCTAGCACTACTCT-CGCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAC-C-
* ** * * * * * * *
25271618 CGAGCACTATTAATTGCAGAGTTCTGATGGGATCCAGTGCATTATTGTTGGTATGATCGCACCCC
64 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCG
* *
25271683 TCAACCCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAA
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * * *
25271748 TTCAAATTCTACCGAATAACATTTCAAGTGATTTATTTCATAAAACGCAAATAACTAATTAGTTA
194 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* * * *
25271813 AACAATGTTT-AAAAAAACTGTATATGAAATATAAAATGGAAGGGGTGCAACACGAGGATTTCCC
259 AACAATGTTTAAAAAAAAAT-TACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCC
* * * * * * * ** * *
25271877 AAG-GAGTTACCCTTCTTAGTACTACTCTCACCCCAA-CATGATTTACTATGAAGTTCTGAAGGG
323 AAGAGA-TCACCCATCCTAGTACTACTCTC-GCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
** * *
25271940 ATCTGGTATATTAGTGCTGGTATGAT-TGCAA-CCTTCAACTCTTGCGCAATCTATTTATATAAA
386 ATCTGGTGCATTAGTGCTGGTATAATCT--AACCCGTCAACTCTTGCGCAATCTATTTATATAAA
** * * ** * *
25272003 AACTTCCCCTTATCGCACTTGCGCCTCAAATTTGAAAGCAAATTCGACCAAAATAACGATTCATG
449 GGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACC-AAATAACGTTTCAAG
* * * * *
25272068 TGATTTCTTT-AGTAAAACGCATATAACTACTTAGTTAAATGATGTTTAAAAAAATTATATGAAA
513 TGATTTATTTCA-TAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAA
25272132 TAT
577 TAT
* * * *
25272135 AAAATAGGAGTGGTGCAACTCGAGGACTTACCCA-AAGGTCACCCATCCTAGTACTACTCTAGCC
1 AAAATGGGAGGGGTGCAACACGAGGACTT-CCCAGGAGGTCACCCATCCTAGTACTACTCTA-CC
* * * * * ** *
25272199 CAAGCACGCTTAACTGCAGAGTTTTGATGGTATTCGGTGCATTAGTGCTGGTATAATCTAACCAG
64 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCG
** * * * *
25272264 TCAACTCCCGCGCACTCTATTTATATCAAGGCTACCCCTTATCACACTTGCGCCTCATATTTGAA
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* *
25272329 TTCAAATTTGACCAAATAACGTTTGAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
194 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* * * * * *
25272394 AACGATGTTT--AAAAAAATTGCATGAAATATAGAATAGGAGGGGTGCCACCCGAGGACTTCCCA
259 AACAATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCA
* * * * *
25272457 AGAGGTCACCCATCCGAGTACAACTCTAGCACAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
324 AGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * * ** * *
25272522 CGGTACATTAGTACTGGTATGATCGCACCCGCCAACTCTTGCGCATTCTATTTATATAAAGGCTA
389 TGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTA
* * * *
25272587 CCCCTTATCGCACTTGTGCCTCGAATTTGAATTCAAATTCGACTAAATAAAGTTTCAAGTAATTT
454 CCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTT
* *
25272652 ATTTCATAAAACGCAAATAACTAATTACTTAAACTATGTTTAAAAATAAATTACATGAAATAT
519 ATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTT-AAAA-AAATTACATGAAATAT
* * * * *
25272715 AAAATAGGAGGGGTGCAACACGAGGACTTCCCAAGAGGTCACCCATCTTAGTACAACTCTAGCCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTA-CCC
* ** * * * * * * *
25272780 AAGCATGCTTAACTATGGAGTTCTAATGGGATCGGGTGCATTCGTGCTTGTATGACCGCACCTGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* * * * *
25272845 CAGCTCTTGCACATTATATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * *
25272910 TCAAATTCAACCAAATAACGTTTCAAGTCATTTATTTCGTAAAACGCAAATAACAAATTAGTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* * * * * *
25272975 ACGATGCTTAAAAATAAATTACATGAAATATAAAATAGGAGGGGTGCAACACGAGAAATTCCCAA
260 ACAATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * * * * * *
25273040 GAGATCACCCGTCCCAGTACTACTCTTGCCTAAGCACGCTTAACTGTGGAGTTCTAATGGGATCC
325 GAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCT
* *
25273105 GGTGCATTAGTGCTGGTATCAT-TGCACACGTCAACGTCAACTCTTGCGCAATCTATTTATGTAA
390 GGTGCATTAGTGCTGGTATAATCT--A-AC--C--CGTCAACTCTTGCGCAATCTATTTATATAA
* *
25273169 AGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAATTCAAATTTGACCAAATAACGTTTCAAG
448 AGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAG
* * * * * *
25273234 CGATTTTTTTTCGTAAAACACAAATAAGTAATTAGTTAAACTATGTTTAAAAAACAAAAAAGATT
513 TGA-TTTATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTT-------AAAAAA-ATT
25273299 ACATGAAATAT
569 ACATGAAATAT
* * * *
25273310 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAAGAGATCACCCATCCTACTACTACTCTTGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTC-TACCC
* ** * * ** *
25273375 AAGCACGCTTAACTGCGGAGTTTTGATGGGATCTAGTGCATTAGTCCTGGTATAATCTAACTCGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* * ** *
25273440 CAACTCTTGCGCAATCTATTTATATAAAAGCTACCCCTTATCTCACTTATGCCTCAAATTTGAAA
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * *
25273505 TCAAATTCAACCAAATAACATTTCAAGTGATTTATTTCGTAAAACACAAATAACTAATTAGTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* * * * * *
25273570 ACGATG-TT---AAAAAATTACATAAAATATAAAATGGGAGGGATGCAACGCGAGGAATTCCCAG
260 ACAATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * ** * *
25273631 GAGGTCACCCATCCTAGTACTACTCTCAG-CCAAGTACATTTAACTGCAGAGTTCTAATGGGATC
325 GAGATCACCCATCCTAGTACTACTCTC-GCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * * ** * *
25273695 CGATGCATTAGTGCTAGTATCATCGCACCCGTAAACTCTTGCGCAATCTATTTATGTAAAGGCTA
389 TGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTA
* ** * *
25273760 CCCCTTATCGCACTTGCACCTTAAATTTGAATTCAAATTCGACCAAGTAAC-TTTCAAGCGATTT
454 CCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTT
* * * *
25273824 AATTCATAAAACACAAATAACGAATTAGTTAAACAATGTTTAAAAAAATTACATGAAATAT
519 ATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAATAT
* * * * * *
25273885 AAAATGGGAAGGGTGCAACCCAAGGACTTCCCAGGAAGTCACCCATCCGAGTACAACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTA-CCC
* * * * * * *
25273950 AAGAACGCTTAACTGCGGAGTTCTGACGGGATCCAGTACATTAGTACTGGTATGATCGCACTCGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* * **
25274015 CAACTCTTGCGCATTCTATTTATATAAAGGCTACCTCTTATCGCACTTGCGCCTTGAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * *
25274080 TCAAATTCGACTAAATAACATTTCAAGTAATTTATTTCGTAAAATGCAAATAACTAATTACTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* * * * *
25274145 ACTATGTTTAAAAACAAATTACATGAAATATAAAATAGGAGGGCTTCAACACGAGGACTTCCCAA
260 ACAATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * * *** * *
25274210 GA-AGTCACCCGTCCTAGTACAACTCTAGCTGGAGCACGCTGAACTACGGAGTTCTGATGGGATC
325 GAGA-TCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATC
* * * ** * ** * * * *
25274274 GGGTGCATTAGTGCTTGTATGATC-GCCCCTGTCAGCTCTTGTACATTATATTTGTATAAAGGCA
389 TGGTGCATTAGTGCTGGTATAATCTAACCC-GTCAACTCTTGCGCAATCTATTTATATAAAGGCT
* * * * * * **
25274338 ACCCCTTATCGCACTTGAGCATTGAATTTGAATTCAAATTCAACCGAATAATGTTTCACCTGATT
453 ACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATT
* * * *
25274403 TATTTCGTAAAACGCAAATAACTAATTAGTTAAACAATGCTTAAAAATAAAGTACATGAAATAT
518 TATTTCATAAAACGCAAATAACTAATTAGTTAAACGATG-TTTAAAA-AAATTACATGAAATAT
* * * * * * * * *
25274467 AAAAAGGGAGAGGTGCAACACGAGGAATTCCCAAGAGATCACCCGTCCCAGTACTACTCTTGCCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTC-TACCC
* * * * *
25274532 AAGAACACTTAACTGTGGTGTTC-GAATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACACG
65 AAGCACGCTTAACTGCGGAGTTCTG-ATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCG
* * *
25274596 TCAACTCTTACGCAATCTATTTATGTAAAGGCTACCCCTTATCGCACTTGTGCCTCAAATTTGAA
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * *
25274661 TTCAAATTCGACCAAATAACGTTTCAAGCGATTTTTTTCGTAAAACACAAATAACTAATTAGTTA
194 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* * *
25274726 AACAATGTTCAAAAAACAAAAAAATTACACGAAATATAAAATGGGAGGGGTGCAACAGGAGGACT
259 AACAATGTT----TAA-AAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACT
* * * *
25274791 TCCCAAGAGATCA-CCATCCTAGTACTACTCTCACCCAAGCACGTTTAACTGCAGAGTTTTGATG
319 TCCCAAGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* *
25274855 GGATCTGGTGCATTACTGCTGGTATAATCTAACTCGTCAACTCTTGCGCAATCTATTTATATAAA
384 GGATCTGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAA
* * * * * * * * *
25274920 AGCTACCCCTTATTGCACTTGTGCCTCAAATTTGAAATCAAATTCAACCGAATAACATTTCAAGC
449 GGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGT
* * *
25274985 GATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACGATGTTT-ACAAAATTACATAAAATA
514 GATTTATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAATA
25275049 T
579 T
* * * *
25275050 AATATAGGAGGGGTGCAACGCGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCAGCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-ACCC
** * * * *
25275115 AAGCACATTTAACTGCAGAGTTCTAATGGGATCCGATGCATTAGTGCTAGTATCATCGCACCCGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* *
25275180 CAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTATCGCGCTTGCGCCTCAAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * *
25275245 TCAAATTCGACCAAGTAACGTTTCAAATGATTTATTTCATAAAACACAAAAAACTAATTAGTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25275310 ACAATGTTTAAAAGTAAAACAATTACATGAAATATAAAATGGGAGCGGTGCAACACGAGGGCTTC
260 ACAATGTTT-AAA--AAAA-AATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTC
* * * * * *
25275375 CCAAGAGATCACCCATCGTAGTACTGCTCTCACCCAAGCACGCTTAACTACGGGGTTTTGATGGG
321 CCAAGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
* * *
25275440 ATCTGGTGCATTAGGGTTAGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
386 ATCTGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGG
* * * *
25275505 CTACCCCTTATCACACTTGTGCCTCGAATTTGAATTCAAATTTGATCAAATAACGTTTCAAGTGA
451 CTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGA
* *
25275570 TTTATTTCGA-AAAACGCAAATAACTAATTAGTTAAACAATGTTAAAAAAAATTACATGAAATAT
516 TTTATTTC-ATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAATAT
** * * *
25275634 AAAATAAGAGGGGTGCAACACGAGGAATTCCCAGGAGGTCACCCATCCTAATACTACTCTCAGCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-ACCC
* * * * * *
25275699 AAGCACGCTTACCTTCGGAGTTCTGATGGGATCCGGTTCATTAGTGCTGGTAGCATCGCTCCCAT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* * * *
25275764 CAACTCGTGCGCAATCTATTTATGTAAAAGCTACCCCTTATCACACTTGCGCCTCAAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* *
25275829 TCAAATTCAACCAAATAACGTTTCAAGCGATTTATTTCGT-AAACGCAAATAACTAATTAGTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* * * *
25275893 ACAATCTTTAAAACACACAAAAAATTACATGAAAAATATAATGGGAGGGGTGCAACACGAAGACT
260 ACAATGTTT---A-A-A-AAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACT
** * * * *
25275958 TCCCGTGAGGTCATCCATCCTAGTACTACTCTAGCCCAAGCACGCTTAACTGCAGAGATT-TGAT
319 TCCCAAGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAG-TTCTGAT
* * *
25276022 GGGAT-TCGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTCGTGCACTCTATTTATATA
383 GGGATCT-GGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATA
* ** *
25276086 AAGGCTACCCCTTATCGCATTTGCGCCTCGAATAGGAATTCAAATTTGACCAAATAACAG-TTCA
447 AAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAAC-GTTTCA
** *
25276150 AGTGATTTATTTTGTAAAATGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAA
511 AGTGATTTATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAA
25276215 ATAT
576 ATAT
* * * *
25276219 AAAATGGGAGTGGTGCAGCACGAGGACTTCCCAGGAGGTCACCCATCCGAGTACAACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTA-CCC
** * * * * *
25276284 AAGCACGCTTAACTTTGGAGTTCTGGTGGGATTCGGTACATTAGTACTGGTATGATCGCACCCGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* * * *
25276349 CAACTCTCGCACATTCTATTCATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * *
25276414 TCAAATTCGACTAAATAACATTTCAAGTAATTTATTTCGTAAAACGCAAATAAGTAATTACTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* * * * * * *
25276479 ACTATGTTTACAAATAAATTACATGAAATATAAAATAGGAGGGGTGCAACATGAGAACTTCCCAT
260 ACAATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * * * * * * * *
25276544 GAGGTCACACATCCTAGTACAACTGTAGCCCAGGCACGCTTAACTACGGGGTTCTGATGGGTTC-
325 GAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCT
* * ** * * *
25276608 GAGTGCATTAGTGCTTGTATGATCGCACCTGTCAACTCTTGCGCATTATATTTATATAAAGGCTA
390 G-GTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTA
* * *
25276673 TCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCAACCAAATAACGTTTCAAGTGTTTT
454 CCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTT
*
25276738 ATTTCATAAAATGCAAATAACTAATTAGTTAAACGATGTTTAAAAATAAATTACATGAAATAT
519 ATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTT-AAAA-AAATTACATGAAATAT
* * * * * * *
25276801 AAAATGGGAGGGGTGCAACACGAGGAATTCCCAAGAGATCACCCGTCCCAGTACTACTCTTGCCT
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTC-TACCC
* * * * *
25276866 AAGCATGCTTATCTGTGGAGTTCTAATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACACGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* *
25276931 CAACTCTTGCGCAATCTATTTATGTAAAGGCTACCCCTTTTCGCACTTGCGCCTCAAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * *
25276996 TGAATTTCGACCAAATAACATTTCAAGTGATTT-TTTCGTAAAACACAAATAACTAATTAGTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25277060 ACAATGTTTAAAAAACAAAAAAAAATACATGAAATATAAAATGGGAGGGGTGCAACACGAGGGCT
260 ACAATGTTT-----A-AAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACT
* *
25277125 TCCCAAGAGATCACCCATCCTAGTACTGCTCTCGCCCAAGCACGCTTAACTGCGGAGTTTTGATG
319 TCCCAAGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
*
25277190 GGATCTGGTGCATTAGTGCTGGTATAATCTAACTCGTCAACTCTTGCGCAATCTATTTATATAAA
384 GGATCTGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAA
* * * * * *
25277255 AGCTACCCCTTATCGCACTTGTGCCTCGAATTAGAAATCACATTCAACCAAATAACGTTTCAAGT
449 GGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGT
* *
25277320 GATTTATTTCATAAAACGCTAATAACTAATTAGTTAAACGATG-TTAAAAAAATTACATAAAATA
514 GATTTATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAATA
25277384 T
579 T
* *
25277385 AAAATGAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTACTCTCACCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-ACCC
** * ** * * * * *
25277450 AAGCACATTTAACTACAAAGTTCTAATGGGATCCGATGCATTAGAGCTAGTATCATCGCACCTGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* *
25277515 CAACTCTTGCGCAATCTATTTATGTAAAGGCTACGCCTTATCGCACTTGCGCCTCAAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * * * *
25277580 TCAAATTCGACCAAGTAATGTTTCAAGCGATTTATTTCATAAAACACAAATAACTAATTAATTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* * *
25277645 ACTATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGAGGTGCAACACGAGGACTTCCCAG
260 ACAATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAA
* * *
25277710 GTGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTACGGAGTTTTGATGGGATCT
325 GAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCT
*
25277775 GGTGCATTAGTGCTAGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTAC
390 GGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTAC
* * *
25277840 CCCTTATCGCACTTGTGCCTCGAATTTGAATTCAAATTTGATCAAATAACGTTTCAAGTGATTTA
455 CCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTA
*
25277905 TTGCGA-AAAACGCAAATAACTAATTAGTTAAACGATG-TTAAAAAAATTACATGAAATAT
520 TTTC-ATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAATAT
** * * * *
25277964 AAAATAAGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATACAAATACTACTCT-CTGC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTAC--C
* * * * * * * *
25278028 CAAGCATGCTTACCTTCGGAGTTTTGATGGGATCTGGTGCATTAGTTCTAGTAGCATCGCACCCG
64 CAAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCG
* * ** * *
25278093 TCAACTCTTGCGCAATCTATTTATGTAAAAGCTACCCCTTATCATACGTGTGCCTCAAATTTGAA
129 TCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAA
* * *
25278158 TTCAAATTCGACCAAATAACATTTCAAGCGATTTATTTCGT-AAACGCAAATAACTAAATAGTTA
194 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTA
* * *
25278222 AAAAATGTTTAGAACACAAAAAAATTACACGAAATATATAATGGGAGGGGTGCAACACGAGGACT
259 AACAATGTTT---A-A-AAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACT
* ** * * *
25278287 TCCCAGGAGGCCACCCATCCTAGTACTACTCTAGCCCAAGCATGCTTAACTGCGGAGTTTTGATG
319 TCCCAAGAGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* *
25278352 GGAT-TCGGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCCATTTATGTAA
384 GGATCT-GGTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAA
* * * *
25278416 AGGCTACCCCTTATCGTACTTGCGCCTCAAATTTGAATTCAAATTCGACCAAGTAACATTTCAAG
448 AGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAG
* * * *
25278481 CGATTTATTTCATAAATCACAAATAACTAATTAGTTAAACAATGTTTAAAAAAATTACATGAAAT
513 TGATTTATTTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAAT
25278546 AT
578 AT
* * * * *
25278548 AAAAGGGGAAGGGTGCAACCCGAGGACTTCCCAGGAGGTCACCCATCCGAGTACAACTCTAGCCC
1 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTA-CCC
* * * * * *
25278613 AAGCATGCTTAACTGCGGAGTTCTGATGAGATCCGGTACATTAGTACTGGAATGATCGCACCCGT
65 AAGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGT
* *
25278678 CAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCGAATTTGAAT
130 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAAT
* * * *
25278743 TCAAATTCGACTAAATAACGTTTCAAGTAATTTATTTCGTAAAATGCAAATAACTAATTACTTAA
195 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAA
* *
25278808 ACTATGTTTAAAAATAAATTACATGAAA-ATAA
260 ACAATGTTTAAAAAAAAATTACATGAAATATAA
25278840 TAAGTAATTT
Statistics
Matches: 5773, Mismatches: 831, Indels: 203
0.85 0.12 0.03
Matches are distributed among these distances:
574 1 0.00
575 243 0.04
576 8 0.00
577 1 0.00
578 87 0.02
579 858 0.15
580 581 0.10
581 253 0.04
582 635 0.11
583 780 0.14
584 674 0.12
585 619 0.11
586 226 0.04
587 306 0.05
588 90 0.02
589 41 0.01
591 119 0.02
592 1 0.00
594 4 0.00
595 245 0.04
596 1 0.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (579 bp):
AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTACCCA
AGCACGCTTAACTGCGGAGTTCTGATGGGATCCGGTGCATTAGTGCTGGTATCATCGCACCCGTC
AACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTGCGCCTCAAATTTGAATT
CAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAA
CAATGTTTAAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAAG
AGATCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGGATCTG
GTGCATTAGTGCTGGTATAATCTAACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACC
CCTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTAT
TTCATAAAACGCAAATAACTAATTAGTTAAACGATGTTTAAAAAAATTACATGAAATAT
Found at i:25279948 original size:49 final size:49
Alignment explanation
Indices: 25279876--25280005 Score: 158
Period size: 50 Copynumber: 2.6 Consensus size: 49
25279866 GTATAATGCT
*
25279876 GATGCCATGT-CTCAGACATGGTCTTACACTGCCTATCA-AAAT-TGAGGCC
1 GATGCCATGTCCT-AGACATGGTCTTACACTG-CTATCACAAATCCG-GGCC
* * *
25279925 GATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATCCGTGCC
1 GATGCCATGTCCTAGACATGGTCTTACACT-GCTATCACAAATCCGGGCC
*
25279975 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCTAGACATGGTCTTACACTG
25280006 ACACATCTCG
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
49 33 0.46
50 38 0.53
51 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
GATGCCATGTCCTAGACATGGTCTTACACTGCTATCACAAATCCGGGCC
Found at i:25280131 original size:47 final size:48
Alignment explanation
Indices: 25280063--25280191 Score: 142
Period size: 47 Copynumber: 2.7 Consensus size: 48
25280053 TACATCTCGA
* * * *
25280063 GGCCAATGCATGTCCCAGACATGTCTTACACTAGCGCTCGT-CTCAA-T
1 GGCCGATGCATGTACCAGACATGTCTTACACTAGCGCTC-TAATAAAGT
*
25280110 -GCCGATGTCATGTACTAGACATGGTCTTACAC-AG-GCTCTAATAAAGT
1 GGCCGATG-CATGTACCAGACAT-GTCTTACACTAGCGCTCTAATAAAGT
*
25280157 GGCCGATGCATGTCCCAGACATGTCTTACACTAGC
1 GGCCGATGCATGTACCAGACATGTCTTACACTAGC
25280192 ACACAAATAA
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
45 1 0.01
46 22 0.32
47 29 0.43
48 16 0.24
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (48 bp):
GGCCGATGCATGTACCAGACATGTCTTACACTAGCGCTCTAATAAAGT
Found at i:25280752 original size:30 final size:30
Alignment explanation
Indices: 25280711--25280769 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
25280701 AATTTACATT
* *
25280711 TTTGGCAAAATGACCATTTTGCCCCTAGGA
1 TTTGACAAAATGACCATTTTACCCCTAGGA
*
25280741 TTTGACAAAATGACCATTTTACCCTTAGG
1 TTTGACAAAATGACCATTTTACCCCTAGG
25280770 CCCATAAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (30 bp):
TTTGACAAAATGACCATTTTACCCCTAGGA
Found at i:25282244 original size:289 final size:290
Alignment explanation
Indices: 25281591--25282893 Score: 1595
Period size: 289 Copynumber: 4.5 Consensus size: 290
25281581 GGCTGTTACA
* * * * * *
25281591 GATCCGGCGCATTAGTGCTAGTATGATCACACCCGTCAACTCTTGTGCATTCTATTTATATAAAG
1 GATCCGGTGCATTAGTGCTGGAATGTTCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAG
* *
25281656 CCTGCCCCTTATCGTACTTGCGCCTCGAATTTGAATTCAAATTC-ATCCAAATAACGTTTCAAGT
66 GCTACCCCTTATCGTACTTGCGCCTCGAATTTGAATTCAAATTCGA-CCAAATAACGTTTCAAGT
* *
25281720 GATTTATTTCATAAAACGCAAATAACTAATTAGTTAAACAATGTTTAAAAATAAATTACATGAAA
130 GATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAA-AAATTACATGAAA
* *
25281785 TATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACAACTCTAC
194 TATAAAATGGGAGGGGTGCAACACGAGGACTTTCCAGGAGGTCACCCATCCTAGTACTACTCT-C
** *
25281850 -CTTAAGCACGCTTAACTGCGGAGTTTTGATGG
258 GCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* * * * *
25281882 GAACCGGTACATTAGTGCTGGTATGTTCGCACCCGTCAACTCCTGCGCACTCTATTTATATAAAG
1 GATCCGGTGCATTAGTGCTGGAATGTTCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAG
* * * *
25281947 ACTACCCCTTACCGTACTTGCGCCTCGAATTTGAATTCAAATTCGACGAAATAATGTTTCAAGTG
66 GCTACCCCTTATCGTACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTG
* *
25282012 ATTTATTTCGTAAAACGCAAATACCTAATTAGTTAAACTATGTTTAAAAAAAA-TACACGAAATA
131 ATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAATTACATGAAATA
* * * *
25282076 TAAAATGGGAGGGGTACAACACGAGGACTTTCCAGGAGGTCACCAATCCCAGTGCTACTCTCGCC
196 TAAAATGGGAGGGGTGCAACACGAGGACTTTCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
* *
25282141 CAAGCACGCTTAGCTGCGGAGTTCTAATGG
261 CAAGCACGCTTAACTGCGGAGTTCTGATGG
* * * * * ** *
25282171 GATTCGGTGCAATAGTGCTGGAATTTTTGCACCCATCAGTTCTTGCGCATTCCATTTATATAAAG
1 GATCCGGTGCATTAGTGCTGGAATGTTCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAG
* * * * * * *
25282236 GGTACCCCTTATCCCT-TTTGCGCCTTGAATTTGAAGTCAAATTCGACGAAATAACATTTCAAGT
66 GCTACCCCTTAT-CGTACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGT
* * *
25282300 GATTTATTTCGTAAAACACAAATAACTAATTAGTTAAACGATCTTTTAAGAAAACAATTACAT-A
130 GATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTAT-GTTTAA-AAAA-AATTACATGA
25282364 AACTATAAAATGGGAGGGGTGCAACACGAGGA-TTTCCCAGGAGGTCACCCATCCTAGTACTACT
192 AA-TATAAAATGGGAGGGGTGCAACACGAGGACTTT-CCAGGAGGTCACCCATCCTAGTACTACT
* * *
25282428 CTCAG-CCAAGCATGCTTACCTTCGGAGTTCTGATGG
255 CTC-GCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* * * * *
25282464 GATCCGGTGTATTAGTGCTGGTAGCAT-TT--CACTCGTCAACTCTTGCACAATCTATTTATGTA
1 GATCCGGTGCATTAGTGCTGG-A--ATGTTCGCACCCGTCAACTCTTGCGCATTCTATTTATATA
* ** * *
25282526 AAAGCTACCCCTTATCGCCCTTGAGCCTCAAATTTGAATTCAAATTCGACCAAATAACGTTTCAA
63 AAGGCTACCCCTTATCGTACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAA
* * *
25282591 GCGATTTATTTCGT-AAACTCAAATAACTAATTAGTTAAACTTTGTTTTAAAAAAAATTACATGA
128 GTGATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTATG-TTTAAAAAAAATTACATGA
* * * ** * * *
25282655 AATATAAAATGGGAAGGCTGCAACAC-AGGGACTTGCTGGGAGATCACCCGTCCTAGCACTACTC
192 AATATAAAATGGGAGGGGTGCAACACGA-GGACTTTCCAGGAGGTCACCCATCCTAGTACTACTC
* * *
25282719 TCGCCCAAGCACACTTAACTTCGGAGTTCTGATAG
256 TCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* * * * *
25282754 GATCCAGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGTATTCTACTTATATAAAG
1 GATCCGGTGCATTAGTGCTGGAATGTTCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAG
* * * * *
25282819 GTTACTCCTTATCGCACTTGCGCCTCGAAATTGAATTCAAATTTGACCAAATAACGTTTCAAGTG
66 GCTACCCCTTATCGTACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTG
*
25282884 TTTTATTTCG
131 ATTTATTTCG
25282894 ATGGGATTTT
Statistics
Matches: 867, Mismatches: 123, Indels: 45
0.84 0.12 0.04
Matches are distributed among these distances:
287 2 0.00
288 2 0.00
289 237 0.27
290 210 0.24
291 174 0.20
292 41 0.05
293 195 0.22
294 2 0.00
295 2 0.00
296 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (290 bp):
GATCCGGTGCATTAGTGCTGGAATGTTCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAG
GCTACCCCTTATCGTACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTG
ATTTATTTCGTAAAACGCAAATAACTAATTAGTTAAACTATGTTTAAAAAAAATTACATGAAATA
TAAAATGGGAGGGGTGCAACACGAGGACTTTCCAGGAGGTCACCCATCCTAGTACTACTCTCGCC
CAAGCACGCTTAACTGCGGAGTTCTGATGG
Found at i:25283270 original size:437 final size:434
Alignment explanation
Indices: 25282499--25283330 Score: 1043
Period size: 437 Copynumber: 1.9 Consensus size: 434
25282489 ATTTCACTCG
* * *
25282499 TCAACTCTTGCACAATCTATTTATGTAAAAGCTACCCCTTATCGCCCTTGAGCCTCAAATTTGAA
1 TCAACTCTTGCACAATCCATTTATATAAAAGCTACCCCTTATCGCACTTGAGCCTCAAATTTGAA
* * * * *
25282564 TTCAAATTCGACCAAATAACGTTTCAAGCGATTTATTTCGTAAACTCAAATAACTAATTAGTTAA
66 TTCAAATTCGACAAAACAACGTTTCAAGCGATATATTTCATAAACGCAAATAACTAATTAGTTAA
* * *
25282629 ACTTTGTTTTAAAAAAAATTACATGAAATATAAAATGGGAAGGCTGCAACACAGGGACTTGCTGG
131 ACTTTGTTTAAAAAAAAATTACATGAAATATAAAATGGGAAGGATGCAACACAGGGACTTCCTGG
* * ** *
25282694 GAGATCACCCGTCCTAGCACTACTCTCGCCCAAGCACACTTAACTTCGGAGTTCTGATAGGATCC
196 GAGATCACCCATCCTAGCACCACTCTCGCCCAAGCACACTTAACCGCAGAGTTCTGATAGGATCC
* * *
25282759 AGTGCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGTATTCTACTTATATAAAGGTTAC
261 AGTGCATTAGTGATGGTATGATCGCACCCGTCAACTCTTGCGCATTCTACTTATATAAAGGCTAC
* * ** * *
25282824 TCCTTATCGCACTTGCGCCTCGAAATTGAATTCAAATTTGACCAAATAACGTTTCAAGTGTTTTA
326 CCCTTATCGCACTTGCACCTCGAAATTGAATTCAAATTCAACCAAATAACGCTTCAAGTGATTTA
25282889 TTTCGATGGGATTTTGAGCATTAGTACTGGTATGATCGCACCCA
391 TTTCGATGGGATTTTGAGCATTAGTACTGGTATGATCGCACCCA
** *
25282933 TCAACTCTTGCGTATTCCATTTATAT-AAAGCTACCCCTTATCGCACTTGCA-CCTCAAATTTGA
1 TCAACTCTTGCACAATCCATTTATATAAAAGCTACCCCTTATCGCACTTG-AGCCTCAAATTTGA
* * *
25282996 ATTCAAATTTGA-AAAAGCAACGTTTCAAGTGATATATTTCATGAAACGCAAATAACTAATTTGT
65 ATTCAAATTCGACAAAA-CAACGTTTCAAGCGATATATTTCAT-AAACGCAAATAACTAATTAGT
* * *
25283060 T-AAGTGTTGTTTAAACAAAAAAAAATT-CAATGAAATATAAAATGGGAGGGATGCAAC-CCGAG
128 TAAACT-TTGTTT----AAAAAAAAATTAC-ATGAAATATAAAATGGGAAGGATGCAACACAG-G
* * * * ** **
25283122 GACTTCCCT-GGATG-TCA-CCATGCTAGTACCACTTTTGCCCGTGCACGGTTAACCGCAGAGTT
186 GACTT-CCTGGGA-GATCACCCATCCTAGCACCACTCTCGCCCAAGCACACTTAACCGCAGAGTT
* * * * **
25283184 TTGATGGGATCCAGTGCATTAGTGATGGTATGGTCGCCCCCGTCAACTCTTGCGCATTCTTTTTA
249 CTGATAGGATCCAGTGCATTAGTGATGGTATGATCGCACCCGTCAACTCTTGCGCATTCTACTTA
* *
25283249 TATAAAGGCTACCCCTTATCGCACTTGCACCTCGAATTTGAATTCAAATTCAACCAAATAATGCT
314 TATAAAGGCTACCCCTTATCGCACTTGCACCTCGAAATTGAATTCAAATTCAACCAAATAACGCT
25283314 TCAAGTGATTTATTTCG
379 TCAAGTGATTTATTTCG
25283331 TAAAACGCAT
Statistics
Matches: 336, Mismatches: 50, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
432 3 0.01
433 69 0.21
434 48 0.14
437 165 0.49
438 48 0.14
439 3 0.01
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (434 bp):
TCAACTCTTGCACAATCCATTTATATAAAAGCTACCCCTTATCGCACTTGAGCCTCAAATTTGAA
TTCAAATTCGACAAAACAACGTTTCAAGCGATATATTTCATAAACGCAAATAACTAATTAGTTAA
ACTTTGTTTAAAAAAAAATTACATGAAATATAAAATGGGAAGGATGCAACACAGGGACTTCCTGG
GAGATCACCCATCCTAGCACCACTCTCGCCCAAGCACACTTAACCGCAGAGTTCTGATAGGATCC
AGTGCATTAGTGATGGTATGATCGCACCCGTCAACTCTTGCGCATTCTACTTATATAAAGGCTAC
CCCTTATCGCACTTGCACCTCGAAATTGAATTCAAATTCAACCAAATAACGCTTCAAGTGATTTA
TTTCGATGGGATTTTGAGCATTAGTACTGGTATGATCGCACCCA
Found at i:25283581 original size:292 final size:291
Alignment explanation
Indices: 25282906--25286036 Score: 3082
Period size: 292 Copynumber: 10.8 Consensus size: 291
25282896 GGGATTTTGA
* * *
25282906 GCATTAGTACTGGTATGATCGCACCCATCAACTCTTGCGTATTCCATTTATATAAA-GCTACCCC
1 GCATTAGTACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * * *
25282970 TTATCGCACTTGCACCTCAAATTTGAATTCAAATTTGA-AAAAGCAACGTTTCAAGTGATATATT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAA-TAACGTTTCAAGTGATTTATT
* * * * *
25283034 TCATGAAACGCAAATAACTAATTTGTTAAGTGTTGTTTAAACAAAAAAAAATT-CAATGAAATAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTT----AAAAAAAAATTAC-ATGAAATAT
* * * * * * * *
25283098 AAAATGGGAGGGATGCAACCCGAGGACTTCCCTGGATGTCA-CCATGCTAGTACCACTTTTGCCC
190 AAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCC
** * * * * * **
25283162 GTGCACGGTTAACCGCAGAGTTTTGATGGGATCCAGT
255 AAGCATGCTTAACTGCGGAGTTCTGATGGGATCTGGT
* * *
25283199 GCATTAGTGA-TGGTATGGTCGCCCCCGTCAACTCTTGCGCATTCTTTTTATATAAAGGCTACCC
1 GCATTAGT-ACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * * *
25283263 CTTATCGCACTTGCACCTCGAATTTGAATTCAAATTCAACCAAATAATGCTTCAAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* *
25283328 TCGTAAAACGCATATAACTAATTAGTTAAACGATGTTTAAAGAAAAAATTACATGAAATATAAAA
130 TCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAA-AAAAAATTACATGAAATATAAAA
* *
25283393 TGGGAAGGGG-GCAACACGTGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAC
194 TGGG-AGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG
* **
25283457 CATGCTTGACTGCGGAAATCTGATGGGATCTGGT
258 CATGCTTAACTGCGGAGTTCTGATGGGATCTGGT
* * * *
25283491 GCATTAGTACGGGCATGATCGGACCCGTCAACTCTTGCGCATTCAATTTATATAAAGGCTACCCC
1 GCATTAGTACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * * * *
25283556 ATATCACACTTACGCATCAAATTTGAATTCAAATTCGACCAAATCACGTTGCAAGTGATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* *
25283621 CGTTAAATGCAAATAACT-A--A--T---T-A-G-TT---AAAAAATTACATGAAATATAAAATG
131 CGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAATG
* * * *
25283672 GGAGGGGTGCACCACGAGTACTTCCCAGGCGGTCACCCATCCTAGTACTACTCTTGCCCAAGCAT
196 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAT
* * *
25283737 GCTTAACTGTGGAGTTTTGATGGGATCCGGT
261 GCTTAACTGCGGAGTTCTGATGGGATCTGGT
* * * * * * * * *
25283768 CCATTGGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAAGGGCTACCCC
1 GCATTAGTACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * * *
25283833 TTATCACCCTTGTGCATCGAATTTGAATTCAAATTCGACCAAAT-ACTGTTTCAACTGATTTATT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAAC-GTTTCAAGTGATTTATT
** * * ** *
25283897 TAATAAAACGCAAATAACTAATTAGGTAAATG-TTTTTTTAAAAAAATTACATAAAATAT-AAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * *
25283960 GGAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCTAGGCA
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCA
* * * * * *
25284025 CGTTTATCTG-GAGAGTTCTGTTTGGACCTGGT
260 TGCTTAACTGCG-GAGTTCTGATGGGATCTGGT
* ** * * *
25284057 GCATTAGTGCTGGTAT-ATTTTCACTCGTCAACTCTTGCGCAATCTATTTATACAAAGGCTACCC
1 GCATTAGTACTGGTATGA-TCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * * * * *
25284121 CATATCACACTTCCGCTTCGAATTTGAATTCAAATTCGACCAAATAACATTTCCAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * * * * *
25284186 TCGTAAAATGCTAATAAGTAATTAGCTCAATTATGTTT---AAAAAATTACATGAAATATAAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAA-
** * * * * *
25284248 TTAGAGGGGTG---CA--AGGAATTTCCAAGAGGTCACCCATCCTAGTACTACTATCGCCCAGGC
194 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * *
25284308 ACGCTTAACTACGGAGTTCTGATGGGATC-CGT
259 ATGCTTAACTGCGGAGTTCTGATGGGATCTGGT
* ** * *
25284340 GCATTAGTGA-GGGTATGATCATACCCGTCAACTCTTGCGCCTTCTATTTATATAAAAGCTACCC
1 GCATTAGT-ACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * * * * ** *
25284404 CATATCACACTTGCACCTTGAATTTTAATTCAAATTAAACCAAATAACATTTCAAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * ** *
25284469 TCGTTAAACGCAAATAAGTAATTAGTTAAACAATGTTTAAAAAAAAGTTACATGAAATATAAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * *
25284534 GGGAGGGGTGCAACACGAGTACATCCCAGGAGGTCACCCATCCTTGTACTACTCTAC-CCCAAGC
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCT-CGCCCAAGC
* * * *
25284598 ATGATTGATTGCGGGGTTCTGATGGGAT-TCGGT
259 ATGCTTAACTGCGGAGTTCTGATGGGATCT-GGT
* * ** ** * *
25284631 -CTATTAGTGCTGGTATGATCACACCTATCAACTCTTATGCAATCTACTTATATAAAGGCTACCC
1 GC-ATTAGTACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * * * *
25284695 CTTATTGCCCTTACGCCAT-GACTTTGAATTCAAATTCGACCAAATAATGTTTCAAGTGATTTAT
65 CTTATCGCACTTGCGCC-TCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTAT
* ** * * * * ** **
25284759 TTAGTAAAATACAAATAACTAATTAGGTAAA-CATTTTTTAAAAAACCTTACACAAAATA-AAAA
129 TTCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAA
* * * *
25284822 TGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTTCTCTCGCCTAGGC
194 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
* * * *
25284887 -TCGCTTATCTTG-GGAGCTTC-GATTGG-TCCCGAT
259 AT-GCTTAAC-TGCGGAG-TTCTGATGGGAT-CTGGT
* ** *
25284920 GCATTAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTATATGAAGGCTACCCC
1 GCATTAGTACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* * * ** *
25284985 TTATCGCACTTCCTCTTAAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTAATTTATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * * *
25285050 CGTAAAATGCTAATAAGTAATTAGTTAAATTATATTT---AAAAAATTACATGAAATATAAAAAG
131 CGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAATG
* * *
25285112 GGAGGGGTGCAACACGAGGACTTTCCAGGAGGTCACCCATCCTAGCATTACTCTCG-CCAAGGCA
196 GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA-GCA
* * * * *
25285176 CGCTTAACTGCAGAGTTCTGATGAGATCCGGA
260 TGCTTAACTGCGGAGTTCTGATGGGATCTGGT
* * * * * * ***
25285208 GCATTAGCACTGATATAATCGCACCCGGCAACTCATGCGCATTCTATTTATATAAAGGCTTCTAT
1 GCATTAGTACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
* ** * ** * ** * *
25285273 TTATCGCACTTGCCCCTCGAATTTGAATTTGAATTCAAGAAAACAACGTTTTGAGAGATATATTT
66 TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
* * * * *
25285338 CATAAAACACAAAAAACTAATTAGTTAAGTGATGTTTAAAGAAAAAAAT-CAATGAAATATAAAA
131 CGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAA-AAAAAATTAC-ATGAAATATAAAA
* * ** * * *
25285402 CGGGAGGGGTGCAACACAAAAACTTCCTAGGAGGTCACCCATCCTAGTACTACTTTTGCCC--GC
194 TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGC
*
25285465 ATACGCTTAACTGCAGAGTTCTGATGGGATCTGGT
259 AT--GCTTAACTGCGGAGTTCTGATGGGATCTGGT
* *
25285500 GCATTAGTGA-TGGTATGATCGCGCCCGTCAACTCTTGCGCATTCTATTTATATGAAGGCTACCC
1 GCATTAGT-ACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* ** * *
25285564 CTTATCGCACCTGTACCACGAATTT-TATATCAAATTCGACCAAATAACGTTTCAAGTGATTTAT
65 CTTATCGCACTTGCGCCTCGAATTTGAAT-TCAAATTCGACCAAATAACGTTTCAAGTGATTTAT
* * *
25285628 TTCATAAAACACAAATAACTAATTAGTTAAATGATGTTTAAAGAAAAAAATTACATGAAAAATAA
129 TTCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTT-AA-AAAAAAATTACATGAAATATAA
* * * *
25285693 AAT-GGAGGGATGCAACACGAGGACTTCCCAGGATGTCACCCATCCTAGTACGACTCTCACCCAA
192 AATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA
* * **
25285757 GCATGATTAACTGCAGAGTTCTGATGGGATCTTCT
257 GCATGCTTAACTGCGGAGTTCTGATGGGATCTGGT
* * * * ** **
25285792 GCATTA-AAGCTGGTATGGTCGCACCCGTCAACTTTTACAAATTCTATTTATATAAAGGCTATAC
1 GCATTAGTA-CTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCC
* * *
25285856 CTTATTGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCGAATAATGTTTCAAGTGATTTATT
65 CTTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATT
* * * * *
25285921 TCGTAAAATGCAAATAACTAATTAGTTAAACGATGTTT-AAAAAAACTTACATCAAATATCAAAT
130 TCGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAAT
* * * * * *
25285985 AGGAGTGGTGCAACACGAGGACATCCCAAGATGTCACCCATTCTAGTACTAC
195 GGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTAC
25286037 NNNNNNNNNN
Statistics
Matches: 2330, Mismatches: 427, Indels: 165
0.80 0.15 0.06
Matches are distributed among these distances:
276 7 0.00
277 224 0.10
278 1 0.00
280 1 0.00
281 2 0.00
282 2 0.00
283 142 0.06
284 64 0.03
285 11 0.00
286 24 0.01
287 42 0.02
288 214 0.09
289 451 0.19
290 169 0.07
291 181 0.08
292 620 0.27
293 74 0.03
294 98 0.04
295 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (291 bp):
GCATTAGTACTGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCC
TTATCGCACTTGCGCCTCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTT
CGTAAAACGCAAATAACTAATTAGTTAAATGATGTTTAAAAAAAAATTACATGAAATATAAAATG
GGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCAT
GCTTAACTGCGGAGTTCTGATGGGATCTGGT
Found at i:25284090 original size:289 final size:289
Alignment explanation
Indices: 25283647--25286036 Score: 2283
Period size: 289 Copynumber: 8.3 Consensus size: 289
25283637 CTAATTAGTT
* * *
25283647 AAAAAATTACATGAAATATAAAATGGGAGGGGTGCACCACGAGTACTTCCCAGGCGGTCACCCAT
1 AAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * * * *
25283712 CCTAGTACTACTCTTGCCCAAGCATGCTTAACTGTGGAGTTTTGATGGGATCC-GGTCCATTGGT
66 CCTAGTACTACTCTCGCCCAGGCACGCTTAACTG-GGAGTTCTGATGGGA-CCTGGTGCATTAGT
* * * * * * *
25283776 GCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAAGGGCTACCCCTTATCACC
129 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCA
* * **
25283841 CTTGTGCATCGAATTTGAATTCAAATTCGACCAAAT-ACTGTTTCAACTGATTTATTTAATAAAA
194 CTTGCGCATCGAATTTGAATTCAAATTCGACCAAATAAC-GTTTCAAGTGATTTATTTCGTAAAA
* *
25283905 CGCAAATAACTAATTAGGTAAATGTTTTTTTA
258 CGCAAATAACTAATTAGTTAAATGTATTTTTA
* *
25283937 AAAAAATTACATAAAATAT-AAATGGAAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
1 AAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * * *
25284001 CCTAGTACTACTCTCGCCTAGGCACGTTTATCTGGAGAGTTCTGTTTGGACCTGGTGCATTAGTG
66 CCTAGTACTACTCTCGCCCAGGCACGCTTAACTGG-GAGTTCTGATGGGACCTGGTGCATTAGTG
** * * * *
25284066 CTGGTAT-ATTTTCACTCGTCAACTCTTGCGCAATCTATTTATACAAAGGCTACCCCATATCACA
130 CTGGTATGA-TCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCA
* * * * *
25284130 CTTCCGCTTCGAATTTGAATTCAAATTCGACCAAATAACATTTCCAGTGATTTATTTCGTAAAAT
194 CTTGCGCATCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAAC
* * * * *
25284195 GCTAATAAGTAATTAGCTCAAT-TATGTTT-
259 GCAAATAACTAATTAGTTAAATGTATTTTTA
** * * *
25284224 AAAAAATTACATGAAATATAAAATTTAGAGGGGTG---CA--AGGAATTTCCAAGAGGTCACCCA
1 AAAAAATTACATGAAATATAAAA-TGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* *
25284284 TCCTAGTACTACTATCGCCCAGGCACGCTTAACTACGGAGTTCTGATGGGATCC--GTGCATTAG
65 TCCTAGTACTACTCTCGCCCAGGCACGCTTAACT-GGGAGTTCTGATGGGA-CCTGGTGCATTAG
** ** ** * * *
25284347 TGAGGGTATGATCATACCCGTCAACTCTTGCGCCTTCTATTTATATAAAAGCTACCCCATATCAC
128 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGC
* * * * ** * *
25284412 ACTTGCACCTTGAATTTTAATTCAAATTAAACCAAATAACATTTCAAGTGATTTATTTCGTTAAA
193 ACTTGCGCATCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAA
* ** *
25284477 CGCAAATAAGTAATTAGTTAAA-CAATGTTTAA
258 CGCAAATAACTAATTAGTTAAATGTAT-TTTTA
* *
25284509 AAAAAAGTTACATGAAATATAAAATGGGAGGGGTGCAACACGAGTACATCCCAGGAGGTCACCCA
1 AAAAAA-TTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * * * * * *
25284574 TCCTTGTACTACTCTAC-CCCAAGCATGATTGATTGCGGGGTTCTGATGGGA-TTCGGT-CTATT
65 TCCTAGTACTACTCT-CGCCCAGGCACGCTTAACTG-GGAGTTCTGATGGGACCT-GGTGC-ATT
* ** ** * *
25284636 AGTGCTGGTATGATCACACCTATCAACTCTTATGCAATCTACTTATATAAAGGCTACCCCTTATT
126 AGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATC
* * * * *
25284701 GCCCTTACGCCAT-GACTTTGAATTCAAATTCGACCAAATAATGTTTCAAGTGATTTATTTAGTA
191 GCACTTGCG-CATCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTA
** * **
25284765 AAATACAAATAACTAATTAGGTAAACAT-TTTTTA
255 AAACGCAAATAACTAATTAGTTAAATGTATTTTTA
* ** *
25284799 AAAAACCTTACACAAAATA-AAAATGGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCA
1 AAAAA-ATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
* * * * * * * *
25284863 TCCTAGTACTTCTCTCGCCTAGGCTCGCTTATCTTGGGAGCTTC-GATTGGTCCCGATGCATTAG
65 TCCTAGTACTACTCTCGCCCAGGCACGCTTAAC-TGGGAG-TTCTGATGGGACCTGGTGCATTAG
* *
25284927 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAACCTATTTATATGAAGGCTACCCCTTATCGC
128 TGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGC
* * * ** *
25284992 ACTTCCTCTTAAAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTAATTTATTTCGTAAAA
193 ACTTGCGCATCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAA
* * * *
25285057 TGCTAATAAGTAATTAGTTAAAT-TATATTT-
258 CGCAAATAACTAATTAGTTAAATGTATTTTTA
* *
25285087 AAAAAATTACATGAAATATAAAAAGGGAGGGGTGCAACACGAGGACTTTCCAGGAGGTCACCCAT
1 AAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * * * * *
25285152 CCTAGCATTACTCTCGCCAAGGCACGCTTAACTGCAGAGTTCTGATGAGATCC-GGAGCATTAGC
66 CCTAGTACTACTCTCGCCCAGGCACGCTTAACTG-GGAGTTCTGATGGGA-CCTGGTGCATTAGT
* * * * * * * ***
25285216 ACTGATATAATCGCACCCGGCAACTCATGCGCATTCTATTTATATAAAGGCTTCTATTTATCGCA
129 GCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCA
* * ** * ** * ** * * *
25285281 CTTGCCCCTCGAATTTGAATTTGAATTCAAGAAAACAACGTTTTGAGAGATATATTTCATAAAAC
194 CTTGCGCATCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAAC
* * * *
25285346 ACAAAAAACTAATTAGTTAAGTG-ATGTTTA
259 GCAAATAACTAATTAGTTAAATGTATTTTTA
** * * ** *
25285376 AAGAAAAAAATCAATGAAATATAAAACGGGAGGGGTGCAACACAAAAACTTCCTAGGAGGTCACC
1 AA-AAAATTA-C-ATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACC
* * * *
25285441 CATCCTAGTACTACTTTTGCCC--GCATACGCTTAACTGCAGAGTTCTGATGGGATCTGGTGCAT
63 CATCCTAGTACTACTCTCGCCCAGGC--ACGCTTAACTG-GGAGTTCTGATGGGACCTGGTGCAT
* * * *
25285504 TAGTGATGGTATGATCGCGCCCGTCAACTCTTGCGCATTCTATTTATATGAAGGCTACCCCTTAT
125 TAGTGCTGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTAT
* *
25285569 CGCACCTGTAC-CA-CGAATTT-TATATCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTC
190 CGCA-CT-TGCGCATCGAATTTGAAT-TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTC
* * *
25285631 ATAAAACACAAATAACTAATTAGTTAAATG-ATGTTTAAAGA
252 GTAAAACGCAAATAACTAATTAGTTAAATGTAT-TTT---TA
* * *
25285672 AAAAAATTACATGAAAAATAAAAT-GGAGGGATGCAACACGAGGACTTCCCAGGATGTCACCCAT
1 AAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
* * * * * * * ** **
25285736 CCTAGTACGACTCTCACCCAAGCATGATTAACTGCAGAGTTCTGATGGGATCTTCTGCATTAAAG
66 CCTAGTACTACTCTCGCCCAGGCACGCTTAACTG-GGAGTTCTGATGGGACCTGGTGCATTAGTG
* * * * ** *
25285801 CTGGTATGGTCGCACCCGTCAACTTTTAC-AAATTCTATTTATATAAAGGCTATACCTTATTGCA
130 CTGGTATGATCGCACCCGTCAACTCTTGCGCAA-TCTATTTATATAAAGGCTACCCCTTATCGCA
* * * *
25285865 CTTGCGCCTCGAATTTGAATTCAAATTCGACCGAATAATGTTTCAAGTGATTTATTTCGTAAAAT
194 CTTGCGCATCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAAC
* *
25285930 GCAAATAACTAATTAGTTAAACG-ATGTTTA
259 GCAAATAACTAATTAGTTAAATGTATTTTTA
* * * * * * *
25285960 AAAAAACTTACATCAAATATCAAATAGGAGTGGTGCAACACGAGGACATCCCAAGATGTCACCCA
1 AAAAAA-TTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCA
*
25286025 TTCTAGTACTAC
65 TCCTAGTACTAC
25286037 NNNNNNNNNN
Statistics
Matches: 1710, Mismatches: 329, Indels: 122
0.79 0.15 0.06
Matches are distributed among these distances:
283 138 0.08
284 65 0.04
285 18 0.01
286 19 0.01
287 33 0.02
288 236 0.14
289 449 0.26
290 157 0.09
291 138 0.08
292 425 0.25
293 19 0.01
294 5 0.00
295 5 0.00
296 3 0.00
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (289 bp):
AAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCAT
CCTAGTACTACTCTCGCCCAGGCACGCTTAACTGGGAGTTCTGATGGGACCTGGTGCATTAGTGC
TGGTATGATCGCACCCGTCAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACT
TGCGCATCGAATTTGAATTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAACGC
AAATAACTAATTAGTTAAATGTATTTTTA
Found at i:25284643 original size:863 final size:858
Alignment explanation
Indices: 25282907--25285996 Score: 3223
Period size: 863 Copynumber: 3.6 Consensus size: 858
25282897 GGATTTTGAG
* * * * * * * *
25282907 CATTAGTACTGGTATGATCGCACCCATCAACTCTTGCGTATTCCATTTATATAAAGCTACCCCTT
1 CATTAGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAAGGCTACCCCTT
* * * * * * * * *
25282972 ATCGCACTTGCACCTCAAATTTGAATTCAAATTTGA-AAAAGCAACGTTTCAAGTGATATATTTC
66 ATCGCCCTTGCGCATCGAATTTGAATTCAAATTCGACCAAA--TACGTTTCAAGTGATTTATTTA
* * * * * * *
25283036 ATGAAACGCAAATAACTAATTTGTTAAGTGTTGTTTAAACAAAAAAAAATT-CAATGAAATATAA
129 ATAAAACACAAATAACTAATTAGGTAAATGTT-TTT----ATAAAAAAATTAC-ATAAAATATAA
* * * * * * * *
25283100 AATGGGAGGGATGCAACCCGAGGACTTCCCTGGATGTCA-CCATGCTAGTACCACTTTTGCC-CG
188 AATGGGAGGGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCTAG
* * * * * * *
25283163 TGCACGGTTAACCGCAGAGTTTTGATGGGATCC-AGTGCATTAGTGATGGTATGGTCGCCCCCGT
253 -GCACGATTAACTGCAGAGTTCTGATGGGA-CCTGGTGCATTAGTGCTGGTATAGTCGCACCCGT
* * * *
25283227 CAACTCTTGCGCATTCTTTTTATATAAAGGCTACCCCTTATCGCACTTGCACCTCGAATTTGAAT
316 CAACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTCCGCCTCGAATTTGAAT
* * * *
25283292 TCAAATTCAACCAAATAATGCTTCAAGTGATTTATTTCGTAAAACGC-ATATAACTAATTAGTTA
381 TCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAATGCTA-ATAACTAATTAGTTA
*
25283356 AACGATGTTTAAAGAAAAAATTACATGAAATATAAAATGGGAAGGGG-GCAACACGTGGACTTCC
445 AACGATGTTT--A-AAAAAATTACATGAAATATAAAATGGG-AGGGGTGC-ACA---GGACTTTC
** * * **
25283420 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAACCATGCTTGACTGCGGAAATCTGATGGGA
502 CAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAGGCACGCTTAACTGCGGAGTTCTGATGGGA
* * * *
25283485 TCTGGTGCATTAGTACGGGCATGATCGGACCCGTCAACTCTTGCGCATTCAATTTATATAAAGGC
567 TC-CGTGCATTAGTACGGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGC
* * * * * * *
25283550 TACCCCATATCACACTTACGCATCAAATTTGAATTCAAATTCGACCAAATCACGTTGCAAGTGAT
631 TACCCCATATCACACTTGCACCTCGAATTTGAATTCAAATTCAACCAAATAACGTTTCAAGTGAT
*
25283615 TTATTTCGTTAAATGCAAATAACT-A--A-TT--A-G-TT--AAAAAATTACATGAAATATAAAA
696 TTATTTCGTTAAACGCAAATAACTAATTAGTTAAATGTTTAAAAAAAATTACATGAAATATAAAA
* *
25283670 TGGGAGGGGTGCACCACGAGTACTTCCCAGGCGGTCACCCATCCTAGTACTACTCTTGCCCAAGC
761 TGGGAGGGGTGCAACACGAGTACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCCAAGC
* * *
25283735 ATGCTTAACTGTGGAGTTTTGATGGGATCCGGT
826 ATGCTTAACTGCGGAGTTCTGATGGGATTCGGT
*
25283768 CCATTGGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAAGGGCTACCCC
1 -CATTAGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAA-GGCTACCCC
* * *
25283833 TTATCACCCTTGTGCATCGAATTTGAATTCAAATTCGACCAAATACTGTTTCAACTGATTTATTT
64 TTATCGCCCTTGCGCATCGAATTTGAATTCAAATTCGACCAAATAC-GTTTCAAGTGATTTATTT
* *
25283898 AATAAAACGCAAATAACTAATTAGGTAAATGTTTTTTTAAAAAAATTACATAAAATAT-AAATGG
128 AATAAAACACAAATAACTAATTAGGTAAATGTTTTTATAAAAAAATTACATAAAATATAAAATGG
* *
25283962 AAGGGGTGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCTAGGCACG
193 GAGGGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCTAGGCACG
* * * * * * ** *
25284027 TTTATCTGGAGAGTTCTGTTTGGACCTGGTGCATTAGTGCTGGTATATTTTCACTCGTCAACTCT
258 ATTAACTGCAGAGTTCTGATGGGACCTGGTGCATTAGTGCTGGTATAGTCGCACCCGTCAACTCT
* * * *
25284092 TGCGCAATCTATTTATACAAAGGCTACCCCATATCACACTTCCGCTTCGAATTTGAATTCAAATT
323 TGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTCCGCCTCGAATTTGAATTCAAATT
* * * * * **
25284157 CGACCAAATAACATTTCCAGTGATTTATTTCGTAAAATGCTAATAAGTAATTAGCTCAATTATGT
388 CGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAATGCTAATAACTAATTAGTTAAACGATGT
** * *
25284222 TT-AAAAAATTACATGAAATATAAAATTTAGAGGGGTGCA-AGGAATTTCCAAGAGGTCACCCAT
453 TTAAAAAAATTACATGAAATATAAAA-TGGGAGGGGTGCACAGGACTTTCCAGGAGGTCACCCAT
* *
25284285 CCTAGTACTACTATCGCCCAGGCACGCTTAACTACGGAGTTCTGATGGGATCCGTGCATTAGTGA
517 CCTAGTACTACTCTCGCCCAGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGTGCATTAGT-A
** * *
25284350 -GGGTATGATCATACCCGTCAACTCTTGCGCCTTCTATTTATATAAAAGCTACCCCATATCACAC
581 CGGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCATATCACAC
* * * *
25284414 TTGCACCTTGAATTTTAATTCAAATTAAACCAAATAACATTTCAAGTGATTTATTTCGTTAAACG
646 TTGCACCTCGAATTTGAATTCAAATTCAACCAAATAACGTTTCAAGTGATTTATTTCGTTAAACG
*
25284479 CAAATAAGTAATTAGTTAAACAATGTTTAAAAAAAAGTTACATGAAATATAAAATGGGAGGGGTG
711 CAAATAACTAATTAGTT--A-AATGTTTAAAAAAAA-TTACATGAAATATAAAATGGGAGGGGTG
* * ** * * *
25284544 CAACACGAGTACATCCCAGGAGGTCACCCATCCTTGTACTACTCTACCCCAAGCATGATTGATTG
772 CAACACGAGTACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCCAAGCATGCTTAACTG
*
25284609 CGGGGTTCTGATGGGATTCGGT
837 CGGAGTTCTGATGGGATTCGGT
* *
25284631 CTATTAGTGCTGGTATGATCACACCTATCAACTCTTATGCAATCTACTTATATAAAGGCTACCCC
1 C-ATTAGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATAT-AAGGCTACCCC
* * * *
25284696 TTATTGCCCTTACGCCAT-GACTTTGAATTCAAATTCGACCAAATAATGTTTCAAGTGATTTATT
64 TTATCGCCCTTGCG-CATCGAATTTGAATTCAAATTCGACCAAAT-ACGTTTCAAGTGATTTATT
* * ** * *
25284760 TAGTAAAATACAAATAACTAATTAGGTAAACATTTTT-TAAAAAACCTTACACAAAATA-AAAAT
127 TAATAAAACACAAATAACTAATTAGGTAAATGTTTTTATAAAAAA-ATTACATAAAATATAAAAT
* * * *
25284823 GGGAGGGGTGCAACACGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTTCTCTCGCCTAGGCT
191 GGGAGGGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCTAGGCA
* * * * * * *
25284888 CGCTTATCTTG-GGAGCTTC-GATTGGTCCCGATGCATTAGTGCTGGTAT-GATCGCACCCGTCA
256 CGATTAAC-TGCAGAG-TTCTGATGGGACCTGGTGCATTAGTGCTGGTATAG-TCGCACCCGTCA
* * * * **
25284950 ACTCTTGCGCAACCTATTTATATGAAGGCTACCCCTTATCGCACTTCCTCTTAAAATTTGAATTC
318 ACTCTTGCGCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTCCGCCTCGAATTTGAATTC
* * *
25285015 AAATTCGACCAAATAACGTTTCAAGTAATTTATTTCGTAAAATGCTAATAAGTAATTAGTTAAAT
383 AAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAATGCTAATAACTAATTAGTTAAAC
* * *
25285080 TATATTT-AAAAAATTACATGAAATATAAAAAGGGAGGGGTGCAACACGAGGACTTTCCAGGAGG
448 GATGTTTAAAAAAATTACATGAAATATAAAATGGGAGGGGTG---CAC-AGGACTTTCCAGGAGG
* * * * * *
25285144 TCACCCATCCTAGCATTACTCTCGCCAAGGCACGCTTAACTGCAGAGTTCTGATGAGATCCGGAG
509 TCACCCATCCTAGTACTACTCTCGCCCAGGCACGCTTAACTGCGGAGTTCTGATGGGATCC-GTG
* * * * * * * ****
25285209 CATTAGCACTGATATAATCGCACCCGGCAACTCATGCGCATTCTATTTATATAAAGGCTTCTATT
573 CATTAGTACGGGTATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCA
* * ** ** * ** * *
25285274 TATCGCACTTGCCCCTCGAATTTGAATTTGAATTCAAGAAAACAACGTTTTGAGAGATATATTTC
638 TATCACACTTGCACCTCGAATTTGAATTCAAATTCAACCAAATAACGTTTCAAGTGATTTATTTC
* * * * * *
25285339 ATAAAACACAAAAAACTAATTAGTTAAGTGATGTTTAAAGAAAAA-AATCAATGAAATATAAAAC
703 GTTAAACGCAAATAACTAATTAGTTAA---ATGTTTAAA-AAAAATTA-C-ATGAAATATAAAAT
* ** * *
25285403 GGGAGGGGTGCAACACAAAAACTTCCTAGGAGGTCACCCATCCTAGTACTACTTTTGCCC--GCA
762 GGGAGGGGTGCAACACGAGTACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCCAAGCA
*
25285466 TACGCTTAACTGCAGAGTTCTGATGGGA-TCTGGT
827 T--GCTTAACTGCGGAGTTCTGATGGGATTC-GGT
* * * * * * *
25285500 GCATTAGTGATGGTATGATCGCGCCCGTCAACTCTTGCGCATTCTATTTATATGAAGGCTACCCC
1 -CATTAGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATAT-AAGGCTACCCC
* *
25285565 TTATCGCACCTGTAC-CA-CGAATTT-TATATCAAATTCGACCAAATAACGTTTCAAGTGATTTA
64 TTATCGC-CCT-TGCGCATCGAATTTGAAT-TCAAATTCGACCAAAT-ACGTTTCAAGTGATTTA
* * * *
25285627 TTTCATAAAACACAAATAACTAATTAGTTAAATGATGTTTAAAGAAAAAAATTACATGAAAA-AT
125 TTTAATAAAACACAAATAACTAATTAGGTAAATG-T-TTT-TATAAAAAAATTACAT-AAAATAT
* * * *
25285691 AAAAT-GGAGGGATGCAACACGAGGACTTCCCAGGATGTCACCCATCCTAGTACGACTCTCACCC
186 AAAATGGGAGGGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCT
* * * ** ** *
25285755 AAGCATGATTAACTGCAGAGTTCTGATGGGATCTTCTGCATTAAAGCTGGTATGGTCGCACCCGT
251 AGGCACGATTAACTGCAGAGTTCTGATGGGACCTGGTGCATTAGTGCTGGTATAGTCGCACCCGT
* * * ** * *
25285820 CAACTTTTAC-AAATTCTATTTATATAAAGGCTATACCTTATTGCACTTGCGCCTCGAATTTGAA
316 CAACTCTTGCGCAA-TCTATTTATATAAAGGCTACCCCTTATCGCACTTCCGCCTCGAATTTGAA
* * *
25285884 TTCAAATTCGACCGAATAATGTTTCAAGTGATTTATTTCGTAAAATGCAAATAACTAATTAGTTA
380 TTCAAATTCGACCAAATAACGTTTCAAGTGATTTATTTCGTAAAATGCTAATAACTAATTAGTTA
* * * *
25285949 AACGATGTTTAAAAAAACTTACATCAAATATCAAATAGGAGTGGTGCA
445 AACGATGTTTAAAAAAA-TTACATGAAATATAAAATGGGAGGGGTGCA
25285997 ACACGAGGAC
Statistics
Matches: 1863, Mismatches: 298, Indels: 125
0.81 0.13 0.05
Matches are distributed among these distances:
849 129 0.07
850 66 0.04
852 1 0.00
853 3 0.00
854 29 0.02
855 4 0.00
857 37 0.02
858 199 0.11
859 4 0.00
860 2 0.00
862 73 0.04
863 591 0.32
864 14 0.01
865 3 0.00
866 1 0.00
867 74 0.04
868 134 0.07
869 219 0.12
870 5 0.00
871 15 0.01
872 215 0.12
873 22 0.01
874 23 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.30
Consensus pattern (858 bp):
CATTAGTGCTGGTATGATCACACCCATCAACTCTTACGCAATCTACTTATATAAGGCTACCCCTT
ATCGCCCTTGCGCATCGAATTTGAATTCAAATTCGACCAAATACGTTTCAAGTGATTTATTTAAT
AAAACACAAATAACTAATTAGGTAAATGTTTTTATAAAAAAATTACATAAAATATAAAATGGGAG
GGATGCAACACGAGGACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCTAGGCACGATT
AACTGCAGAGTTCTGATGGGACCTGGTGCATTAGTGCTGGTATAGTCGCACCCGTCAACTCTTGC
GCAATCTATTTATATAAAGGCTACCCCTTATCGCACTTCCGCCTCGAATTTGAATTCAAATTCGA
CCAAATAACGTTTCAAGTGATTTATTTCGTAAAATGCTAATAACTAATTAGTTAAACGATGTTTA
AAAAAATTACATGAAATATAAAATGGGAGGGGTGCACAGGACTTTCCAGGAGGTCACCCATCCTA
GTACTACTCTCGCCCAGGCACGCTTAACTGCGGAGTTCTGATGGGATCCGTGCATTAGTACGGGT
ATGATCGCACCCGTCAACTCTTGCGCATTCTATTTATATAAAGGCTACCCCATATCACACTTGCA
CCTCGAATTTGAATTCAAATTCAACCAAATAACGTTTCAAGTGATTTATTTCGTTAAACGCAAAT
AACTAATTAGTTAAATGTTTAAAAAAAATTACATGAAATATAAAATGGGAGGGGTGCAACACGAG
TACTTCCCAGGAGGTCACCCATCCTAGTACTACTCTTGCCCAAGCATGCTTAACTGCGGAGTTCT
GATGGGATTCGGT
Found at i:25297515 original size:20 final size:20
Alignment explanation
Indices: 25297469--25297515 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
25297459 AGCTTGTTTC
*
25297469 CAGCTCACTCGAGCTCAAGT
1 CAGCTCACTCAAGCTCAAGT
* * *
25297489 CAACTCATTCAAGCTCAATT
1 CAGCTCACTCAAGCTCAAGT
25297509 CAGCTCA
1 CAGCTCA
25297516 ATCTTAACCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.13, T:0.23
Consensus pattern (20 bp):
CAGCTCACTCAAGCTCAAGT
Found at i:25305636 original size:12 final size:12
Alignment explanation
Indices: 25305621--25305657 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
25305611 TTTGCTCGAT
*
25305621 TTTTTTTTTCAC
1 TTTTTTTTTCAA
*
25305633 TTTTTTTTTGAA
1 TTTTTTTTTCAA
25305645 TTTTTTTTTCAA
1 TTTTTTTTTCAA
25305657 T
1 T
25305658 CAATTTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.14, C:0.08, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTTTTTTCAA
Found at i:25305676 original size:14 final size:13
Alignment explanation
Indices: 25305606--25305678 Score: 51
Period size: 12 Copynumber: 5.3 Consensus size: 13
25305596 TGGTCACCTT
*
25305606 TTTTTTTTGCTCGAT
1 TTTTTTTT--TCGAA
*
25305621 TTTTTTTTTC-AC
1 TTTTTTTTTCGAA
25305633 TTTTTTTTT-GAA
1 TTTTTTTTTCGAA
*
25305645 TTTTTTTTTCAATCAA
1 TTTTTTTTTC---GAA
25305661 TTTTTTTTTCGAAA
1 TTTTTTTTTCG-AA
25305675 TTTT
1 TTTT
25305679 CTTATTTTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
12 20 0.42
13 2 0.04
14 6 0.12
15 8 0.17
16 12 0.25
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.70
Consensus pattern (13 bp):
TTTTTTTTTCGAA
Found at i:25307604 original size:36 final size:36
Alignment explanation
Indices: 25307557--25307631 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
25307547 GTTTACTTTG
*
25307557 ATGATATTTTAATTTACTTAAAGACATTAGATGATC
1 ATGATATTTTAATTTACTCAAAGACATTAGATGATC
25307593 ATGATATTTTAATTTACTCAAAGACATTAGATGATC
1 ATGATATTTTAATTTACTCAAAGACATTAGATGATC
25307629 ATG
1 ATG
25307632 TTTTCCATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (36 bp):
ATGATATTTTAATTTACTCAAAGACATTAGATGATC
Found at i:25308784 original size:13 final size:13
Alignment explanation
Indices: 25308766--25308790 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25308756 GTATTGATCA
25308766 TGTGTTCACACCT
1 TGTGTTCACACCT
25308779 TGTGTTCACACC
1 TGTGTTCACACC
25308791 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:25309867 original size:10 final size:11
Alignment explanation
Indices: 25309845--25309869 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25309835 AAAAAAATCG
25309845 AAATTCAAAAA
1 AAATTCAAAAA
25309856 AAATTCAAAAA
1 AAATTCAAAAA
25309867 AAA
1 AAA
25309870 AATTGAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAATTCAAAAA
Found at i:25309887 original size:13 final size:13
Alignment explanation
Indices: 25309851--25309887 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
25309841 ATCGAAATTC
*
25309851 AAAAAAAATTCAA
1 AAAAAAAATTGAA
25309864 AAAAAAAATTGAA
1 AAAAAAAATTGAA
25309877 AAAAAAAATTG
1 AAAAAAAATTG
25309888 CATACGGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (13 bp):
AAAAAAAATTGAA
Found at i:25312394 original size:15 final size:15
Alignment explanation
Indices: 25312376--25312417 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
25312366 AAAAAAAGTG
*
25312376 AAAAAAAAATCGAGC
1 AAAAAAAAATCGACC
25312391 AAAAAAAAAGGT-GACC
1 AAAAAAAAA--TCGACC
25312407 AAAAAAAAATC
1 AAAAAAAAATC
25312418 AAGTTAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
14 1 0.04
15 9 0.39
16 12 0.52
17 1 0.04
ACGTcount: A:0.69, C:0.12, G:0.12, T:0.07
Consensus pattern (15 bp):
AAAAAAAAATCGACC
Found at i:25313370 original size:15 final size:16
Alignment explanation
Indices: 25313350--25313381 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
25313340 AGAAAATGAA
25313350 AAAGAAAAAGAA-ATG
1 AAAGAAAAAGAAGATG
25313365 AAAGAAAAAGAAGATG
1 AAAGAAAAAGAAGATG
25313381 A
1 A
25313382 GTGTGAGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06
Consensus pattern (16 bp):
AAAGAAAAAGAAGATG
Found at i:25313496 original size:17 final size:18
Alignment explanation
Indices: 25313464--25313497 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25313454 AAAAGAGAGT
*
25313464 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
25313482 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
25313498 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:25316567 original size:17 final size:18
Alignment explanation
Indices: 25316535--25316568 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25316525 AAAAGAGAGT
*
25316535 GAGATTGAAGGAAGAAAC
1 GAGAGTGAAGGAAGAAAC
25316553 GAGAGTGAA-GAAGAAA
1 GAGAGTGAAGGAAGAAA
25316569 GGAGTGTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.53, C:0.03, G:0.35, T:0.09
Consensus pattern (18 bp):
GAGAGTGAAGGAAGAAAC
Found at i:25318464 original size:13 final size:13
Alignment explanation
Indices: 25318446--25318470 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25318436 GTATTGATCA
25318446 TGTGTTCACACCT
1 TGTGTTCACACCT
25318459 TGTGTTCACACC
1 TGTGTTCACACC
25318471 ATGATGACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.32, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTGTTCACACCT
Found at i:25324233 original size:18 final size:18
Alignment explanation
Indices: 25324212--25324246 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
25324202 TTTTTCTTTT
25324212 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
25324230 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
25324247 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:25325170 original size:16 final size:17
Alignment explanation
Indices: 25325137--25325174 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
25325127 TTTAACTTGA
* *
25325137 TTTTTTTGGTCACCTTT
1 TTTTTTTGCTCACATTT
25325154 TTTTTTTGCTCA-ATTT
1 TTTTTTTGCTCACATTT
25325170 TTTTT
1 TTTTT
25325175 CACTTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.08, C:0.13, G:0.08, T:0.71
Consensus pattern (17 bp):
TTTTTTTGCTCACATTT
Found at i:25328759 original size:18 final size:18
Alignment explanation
Indices: 25328738--25328772 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
25328728 TTTTTCTTTT
25328738 TCAATTT-TTTTCTCAATC
1 TCAATTTCTTTT-TCAATC
25328756 TCAATTTCTTTTTCAAT
1 TCAATTTCTTTTTCAAT
25328773 TTTCTTTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.23, C:0.20, G:0.00, T:0.57
Consensus pattern (18 bp):
TCAATTTCTTTTTCAATC
Found at i:25329664 original size:11 final size:10
Alignment explanation
Indices: 25329650--25329689 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
25329640 CTTTTCACTT
25329650 TTTTTTTGTTC
1 TTTTTTT-TTC
*
25329661 TTTTCTTTTAC
1 TTTT-TTTTTC
25329672 TTTTTTTTTC
1 TTTTTTTTTC
25329682 TTTTTTTT
1 TTTTTTTT
25329690 AACTCGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 13 0.50
11 10 0.38
12 3 0.12
ACGTcount: A:0.03, C:0.10, G:0.03, T:0.85
Consensus pattern (10 bp):
TTTTTTTTTC
Found at i:25329677 original size:21 final size:20
Alignment explanation
Indices: 25329651--25329690 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
25329641 TTTTCACTTT
25329651 TTTTTTGTTCTTTTCTTTTAC
1 TTTTTTGTTCTTTT-TTTTAC
*
25329672 TTTTTTTTTCTTTTTTTTA
1 TTTTTTGTTCTTTTTTTTA
25329691 ACTCGATTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.05, C:0.10, G:0.03, T:0.82
Consensus pattern (20 bp):
TTTTTTGTTCTTTTTTTTAC
Found at i:25329688 original size:24 final size:25
Alignment explanation
Indices: 25329640--25329688 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
25329630 ACTCACAATA
*
25329640 CTTTTCACTTTTTTTTTGTTCTTTT
1 CTTTTCACTTTTTTTTTCTTCTTTT
*
25329665 CTTTT-ACTTTTTTTTTCTTTTTTT
1 CTTTTCACTTTTTTTTTCTTCTTTT
25329689 TAACTCGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.77
25 5 0.23
ACGTcount: A:0.04, C:0.14, G:0.02, T:0.80
Consensus pattern (25 bp):
CTTTTCACTTTTTTTTTCTTCTTTT
Found at i:25329722 original size:11 final size:11
Alignment explanation
Indices: 25329649--25329726 Score: 50
Period size: 11 Copynumber: 6.6 Consensus size: 11
25329639 ACTTTTCACT
*
25329649 TTTTTTTTGTTC
1 TTTTTTTT-TCC
* *
25329661 TTTTCTTTTAC
1 TTTTTTTTTCC
25329672 TTTTTTTTT-C
1 TTTTTTTTTCC
*
25329682 TTTTTTTTAACTCGA
1 TTTTTTTT---TC-C
*
25329697 TTTTTTTGTCAC
1 TTTTTTTTTC-C
25329709 TTTTTTTTTCC
1 TTTTTTTTTCC
25329720 TTTTTTT
1 TTTTTTT
25329727 CGATTTTTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 11
0.74 0.11 0.15
Matches are distributed among these distances:
10 9 0.17
11 18 0.34
12 18 0.34
13 1 0.02
15 7 0.13
ACGTcount: A:0.06, C:0.13, G:0.04, T:0.77
Consensus pattern (11 bp):
TTTTTTTTTCC
Found at i:25329748 original size:15 final size:15
Alignment explanation
Indices: 25329730--25329782 Score: 61
Period size: 15 Copynumber: 3.3 Consensus size: 15
25329720 TTTTTTTCGA
25329730 TTTTTTTTTGAATTT
1 TTTTTTTTTGAATTT
*
25329745 TTTTTTTCTGAATCAATT
1 TTTTTTTTTGAAT---TT
*
25329763 TTTTTTTTCGAATTT
1 TTTTTTTTTGAATTT
25329778 TTTTT
1 TTTTT
25329783 GATTTTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
15 19 0.59
18 13 0.41
ACGTcount: A:0.15, C:0.06, G:0.06, T:0.74
Consensus pattern (15 bp):
TTTTTTTTTGAATTT
Found at i:25329782 original size:18 final size:19
Alignment explanation
Indices: 25329740--25329775 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
25329730 TTTTTTTTTG
25329740 AATTTTTTTTTTCTGAATC
1 AATTTTTTTTTTCTGAATC
25329759 AATTTTTTTTTTC-GAAT
1 AATTTTTTTTTTCTGAAT
25329776 TTTTTTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.22, C:0.08, G:0.06, T:0.64
Consensus pattern (19 bp):
AATTTTTTTTTTCTGAATC
Done.