Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 80 of 259
Found at i:25837449 original size:27 final size:27
Alignment explanation
Indices: 25837415--25837481 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 27
25837405 TGGATAAGTT
* *
25837415 GTAGAATTACTGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTATAAG
*
25837442 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTATAAG
* *
25837469 GTAGGACTACCGA
1 GTAGAATTACCGA
25837482 TTTACCCTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTATAAG
Found at i:25838275 original size:27 final size:26
Alignment explanation
Indices: 25838223--25838282 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
25838213 ACATATATAT
*
25838223 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
25838249 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
25838276 ATATCTG
1 ATATCTG
25838283 GCAGCCTCGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:25844919 original size:27 final size:27
Alignment explanation
Indices: 25844883--25844940 Score: 98
Period size: 27 Copynumber: 2.1 Consensus size: 27
25844873 TGGATAAGTT
25844883 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
25844910 GTAGAGTTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
25844937 GTAG
1 GTAG
25844941 GACTACCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:25865468 original size:40 final size:40
Alignment explanation
Indices: 25865271--25865454 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
25865261 TGAATGATGT
* * * *
25865271 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAGTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
25865311 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
25865351 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25865389 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
25865430 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
25865455 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:25865476 original size:79 final size:78
Alignment explanation
Indices: 25865271--25865487 Score: 237
Period size: 79 Copynumber: 2.7 Consensus size: 78
25865261 TGAATGATGT
* *
25865271 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAG-TATATCCGGACTAAGATCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-AGCTATATCCGG-TTAAG-TCCGAAGGCATT
*
25865334 TGTGCGAGATACTAATT
62 TGTGCGAGATACTAATA
*
25865351 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGTTAAGT-CCGAAGGCATTT
*
25865414 GTGCGAGTTACT-ATAA
63 GTGCGAGATACTAAT-A
* ** *
25865430 CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTT-AAGTCCGAAGG
25865488 TACGTGATTT
Statistics
Matches: 118, Mismatches: 10, Indels: 19
0.80 0.07 0.13
Matches are distributed among these distances:
78 3 0.03
79 67 0.57
80 48 0.41
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGCTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:25868202 original size:47 final size:47
Alignment explanation
Indices: 25868148--25868505 Score: 590
Period size: 47 Copynumber: 7.6 Consensus size: 47
25868138 TATTTGAATA
25868148 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25868195 AATGTGAAAGTGTATTTATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
25868242 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
25868291 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
25868338 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
25868385 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
25868432 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
25868479 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
25868506 TCCCGAAGGG
Statistics
Matches: 295, Mismatches: 14, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
47 251 0.85
49 44 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:25869895 original size:13 final size:13
Alignment explanation
Indices: 25869877--25869901 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25869867 AGGTTGTGTG
25869877 AGGGACACGGGCT
1 AGGGACACGGGCT
25869890 AGGGACACGGGC
1 AGGGACACGGGC
25869902 GTGTGCTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.48, T:0.04
Consensus pattern (13 bp):
AGGGACACGGGCT
Found at i:25871274 original size:50 final size:50
Alignment explanation
Indices: 25871200--25871424 Score: 208
Period size: 50 Copynumber: 4.5 Consensus size: 50
25871190 TGAAGACACG
* *
25871200 TGTGTAGT-CTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * * ** *
25871249 TGTGTAGTATTAAGTGCAGGCTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * *
25871300 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * * * * * *
25871350 TGTGTAGTACTTAGTGTAGGCTACTACGTGTATCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
*
25871399 TGTGTAGTGCTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
25871425 TGCGTATCAG
Statistics
Matches: 144, Mismatches: 24, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 39 0.27
50 62 0.43
51 34 0.24
52 3 0.02
53 3 0.02
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:25878590 original size:49 final size:50
Alignment explanation
Indices: 25878420--25878648 Score: 261
Period size: 49 Copynumber: 4.6 Consensus size: 50
25878410 ATTGTGAATA
* *
25878420 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CAATACTGTTAAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-AGACTGTTGAGT
* * * * *
25878470 CGCATGTGTAGTACTAAGTTCAGGCTACTATGCGTACTCAATGACT-TCGA-T
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TC-A-GACTGTTGAGT
* *
25878521 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGA-TGGTGAGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTTGAGT
* * *
25878570 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTTG-GT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTTGAGT
* *
25878619 CGCATGTGTAGTACTAAGTGTAGGCTACTA
1 CACATGTGTAGTACTAAGTGCAGGCTACTA
25878649 TGCGCATCAG
Statistics
Matches: 153, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
47 1 0.01
48 4 0.03
49 70 0.46
50 38 0.25
51 32 0.21
52 5 0.03
53 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGACTGTTGAGT
Found at i:25886469 original size:46 final size:46
Alignment explanation
Indices: 25886326--25886469 Score: 118
Period size: 46 Copynumber: 3.1 Consensus size: 46
25886316 CCCGCCCCTA
* * *
25886326 AGTGAACTCGGACTCAACTCAACAAGTTCGGATGC-CTAGTTACATTTC-
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACAATCCT
* * *** *
25886374 A-CGAACTCAGACTCAACTCAACGAGTTCGGACATTC-GC-ATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAATCC-T
25886418 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAATCCT
25886465 AGTGA
1 AGTGA
25886470 CATGTAACTT
Statistics
Matches: 74, Mismatches: 15, Indels: 16
0.70 0.14 0.15
Matches are distributed among these distances:
42 2 0.03
43 1 0.01
45 1 0.01
46 35 0.47
47 29 0.39
48 6 0.08
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACAATCCT
Found at i:25886909 original size:30 final size:30
Alignment explanation
Indices: 25886875--25886934 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25886865 ATTTACTACG
25886875 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
25886905 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
25886935 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:25891925 original size:22 final size:22
Alignment explanation
Indices: 25891900--25891964 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
25891890 GTAAATACAT
*
25891900 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* * *
25891922 TTGGCACAGAGCCA-GATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
25891944 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
25891965 AATAATTGGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 2 0.06
22 31 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.26, T:0.18
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:25892166 original size:41 final size:41
Alignment explanation
Indices: 25892109--25892188 Score: 151
Period size: 41 Copynumber: 2.0 Consensus size: 41
25892099 AAGCCACCGA
25892109 TGGATCCACGATAGTCAAGCAACCATGCGATCCTCAATTGG
1 TGGATCCACGATAGTCAAGCAACCATGCGATCCTCAATTGG
*
25892150 TGGATCCACGATAGTCAAGCAACCATGTGATCCTCAATT
1 TGGATCCACGATAGTCAAGCAACCATGCGATCCTCAATT
25892189 TCTTCCTCCG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (41 bp):
TGGATCCACGATAGTCAAGCAACCATGCGATCCTCAATTGG
Found at i:25892567 original size:27 final size:27
Alignment explanation
Indices: 25892446--25892567 Score: 75
Period size: 27 Copynumber: 4.4 Consensus size: 27
25892436 GTTAAATCTA
* * *
25892446 CAAACCAATGGTATTT-TGATAATTTTG
1 CAAATCAAGGGTATTTCTG-TAATTTTC
** * *
25892473 CAAATCAATAGTATTTCTGCAATTTTTT
1 CAAATCAAGGGTATTTCTGTAA-TTTTC
* * * *
25892501 GAAAGTTAAGGATATTTTTGTAATTTTC
1 CAAA-TCAAGGGTATTTCTGTAATTTTC
* * * *
25892529 TAATTTAGGGGTATTTCTGTAATTTTC
1 CAAATCAAGGGTATTTCTGTAATTTTC
25892556 CAAATCAAGGGT
1 CAAATCAAGGGT
25892568 CTTGTAACAC
Statistics
Matches: 71, Mismatches: 21, Indels: 6
0.72 0.21 0.06
Matches are distributed among these distances:
27 44 0.62
28 15 0.21
29 12 0.17
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.43
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCTGTAATTTTC
Found at i:25893243 original size:6 final size:6
Alignment explanation
Indices: 25893234--25893405 Score: 111
Period size: 6 Copynumber: 27.8 Consensus size: 6
25893224 AATTAAAATG
* * * *
25893234 AGAATC AGAATT AGAATC AGAATC AG-GTGAC AGAATC AAAATC AAAATC
1 AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC
* * * *
25893283 AGAATC AGAATT AGGTAA-C ACAATC AGAATC AGTATC AGGTAA-C AGAATT
1 AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC A-G-AATC AGAATC
* * *
25893333 AGAATC AGAACC AGAATT AGAATC AGGTAA-C AGAATC AGAATC AGTATC
1 AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAATC
*
25893382 AGGTAA-C AGAATC GGAATC AGAAT
1 A-G-AATC AGAATC AGAATC AGAAT
25893406 GTGAATGCAA
Statistics
Matches: 129, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
5 9 0.07
6 99 0.77
7 14 0.11
8 7 0.05
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:25893307 original size:25 final size:25
Alignment explanation
Indices: 25893279--25893342 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
25893269 TCAAAATCAA
*
25893279 AATCAGAATCAGAATTAGGTAACAC
1 AATCAGAATCAGAATCAGGTAACAC
* *
25893304 AATCAGAATCAGTATCAGGTAACAG
1 AATCAGAATCAGAATCAGGTAACAC
*
25893329 AATTAGAATCAGAA
1 AATCAGAATCAGAA
25893343 CCAGAATTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (25 bp):
AATCAGAATCAGAATCAGGTAACAC
Found at i:25893321 original size:37 final size:37
Alignment explanation
Indices: 25893234--25893334 Score: 114
Period size: 37 Copynumber: 2.7 Consensus size: 37
25893224 AATTAAAATG
* * * *
25893234 AGAATCAGAATTAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATTAGGTAACACAATC
* *
25893271 AAAATCAAAATCAGAATCAGAATTAGGTAACACAATC
1 AGAATCAGAATCAGAATCAGAATTAGGTAACACAATC
*
25893308 AGAATCAGTATCAGGTAA-CAGAATTAG
1 AGAATCAGAATCA-G-AATCAGAATTAG
25893335 AATCAGAACC
Statistics
Matches: 53, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
37 41 0.77
38 10 0.19
39 2 0.04
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATTAGGTAACACAATC
Found at i:25893348 original size:37 final size:37
Alignment explanation
Indices: 25893307--25893377 Score: 115
Period size: 37 Copynumber: 1.9 Consensus size: 37
25893297 GTAACACAAT
* *
25893307 CAGAATCAGTATCAGGTAACAGAATTAGAATCAGAAC
1 CAGAATCAGAATCAGGTAACAGAATCAGAATCAGAAC
*
25893344 CAGAATTAGAATCAGGTAACAGAATCAGAATCAG
1 CAGAATCAGAATCAGGTAACAGAATCAGAATCAG
25893378 TATCAGGTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.18
Consensus pattern (37 bp):
CAGAATCAGAATCAGGTAACAGAATCAGAATCAGAAC
Found at i:25893367 original size:25 final size:25
Alignment explanation
Indices: 25893338--25893405 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
25893328 GAATTAGAAT
*
25893338 CAGAACCAGAATTAGAATCAGGTAA
1 CAGAACCAGAATCAGAATCAGGTAA
* *
25893363 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAACCAGAATCAGAATCAGGTAA
* *
25893388 CAGAATCGGAATCAGAAT
1 CAGAACCAGAATCAGAAT
25893406 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.18
Consensus pattern (25 bp):
CAGAACCAGAATCAGAATCAGGTAA
Found at i:25893400 original size:62 final size:62
Alignment explanation
Indices: 25893213--25893404 Score: 235
Period size: 62 Copynumber: 3.1 Consensus size: 62
25893203 AAGAAACATT
* * * * * * *
25893213 ATCAGAACTAGAATTAAAATGA-G-AATCAGAATTAGAATCAGAATCAGGTGACAGAATCAAA
1 ATCAGAACCAGAATTAGAATCAGGTAA-CAGAATCAGAATCAGTATCAGGTAACAGAATCAGA
* * * * * *
25893274 ATCAAAATCAGAATCAGAATTAGGTAACACAATCAGAATCAGTATCAGGTAACAGAATTAGA
1 ATCAGAACCAGAATTAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGA
*
25893336 ATCAGAACCAGAATTAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCGGA
1 ATCAGAACCAGAATTAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGA
25893398 ATCAGAA
1 ATCAGAA
25893405 TGTGAATGCA
Statistics
Matches: 110, Mismatches: 19, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
61 16 0.15
62 92 0.84
63 2 0.02
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.19
Consensus pattern (62 bp):
ATCAGAACCAGAATTAGAATCAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAATCAGA
Found at i:25893402 original size:19 final size:19
Alignment explanation
Indices: 25893246--25893377 Score: 101
Period size: 19 Copynumber: 6.7 Consensus size: 19
25893236 AATCAGAATT
*
25893246 AGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGGTAAC
* *
25893265 AGAATCAAAATCA--AAATC
1 AGAATCAGAATCAGGTAA-C
*
25893283 AGAATCAGAATTAGGTAACACAATC
1 AGAATCAGAATCAGGT-----AA-C
*
25893308 AGAATCAGTATCAGGTAAC
1 AGAATCAGAATCAGGTAAC
*
25893327 AGAATTAGAATCA-G-AACC
1 AGAATCAGAATCAGGTAA-C
*
25893345 AGAATTAGAATCAGGTAAC
1 AGAATCAGAATCAGGTAAC
25893364 AGAATCAGAATCAG
1 AGAATCAGAATCAG
25893378 TATCAGGTAA
Statistics
Matches: 91, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
17 3 0.03
18 27 0.30
19 39 0.43
20 4 0.04
25 18 0.20
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (19 bp):
AGAATCAGAATCAGGTAAC
Found at i:25893572 original size:27 final size:26
Alignment explanation
Indices: 25893524--25893583 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
25893514 ATGAGGCTGC
*
25893524 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
25893551 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
25893577 CAGATAT
1 CAGATAT
25893584 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:25893881 original size:27 final size:27
Alignment explanation
Indices: 25893851--25894075 Score: 206
Period size: 27 Copynumber: 8.4 Consensus size: 27
25893841 AGGGTAAAAT
* *
25893851 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
25893878 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * * *
25893905 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
25893932 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
25893959 GGTAATTCTACCTTACAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
25893986 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
25894013 AGT-ATTTCTACTCTACAAGGGTA-TTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
25894039 GGT-ATTTCTATCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
25894066 AGTAATTTTA
1 GGTAATTTTA
25894076 TAAATTGAGG
Statistics
Matches: 167, Mismatches: 26, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
26 29 0.17
27 131 0.78
28 7 0.04
ACGTcount: A:0.25, C:0.19, G:0.19, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:25893979 original size:81 final size:80
Alignment explanation
Indices: 25893855--25894072 Score: 314
Period size: 81 Copynumber: 2.7 Consensus size: 80
25893845 TAAAATGGTA
* * *
25893855 ATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTTAGTAATTCTACCCT
* *
25893919 ATAGGGGTATTTCGGT
65 ACAGGGGTATTTCAGT
25893935 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACC-TACAGGGGTATTTTAGTAATTCTACCCT
25894000 ACAGGGGTATTTCAGT
65 ACAGGGGTATTTCAGT
* * * *
25894016 ATTTCTACTCTACAAGGGTA-TTCGGTATTTCTATCCTACAAGGGTATTTCAGTAATT
1 ATTTCTACCCTACAAGGGTATTTCGGTAATTCTA-CCTACAGGGGTATTTTAGTAATT
25894073 TTATAAATTG
Statistics
Matches: 126, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
80 37 0.29
81 89 0.71
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (80 bp):
ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCTACAGGGGTATTTTAGTAATTCTACCCTA
CAGGGGTATTTCAGT
Found at i:25894142 original size:27 final size:27
Alignment explanation
Indices: 25894067--25894139 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
25894057 GGGTATTTCA
* * *
25894067 GTAATTTTATAAATTGAGGGTAAAAAG
1 GTAATTCTGTAAATCGAGGGTAAAAAG
* *
25894094 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAAAG
25894121 GTAATTCTGTAAATC-AGGG
1 GTAATTCTGTAAATCGAGGG
25894140 GTACTTTGGT
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
26 4 0.10
27 38 0.90
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.32
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAAAG
Found at i:25894207 original size:27 final size:27
Alignment explanation
Indices: 25894148--25894482 Score: 107
Period size: 27 Copynumber: 12.4 Consensus size: 27
25894138 GGGTACTTTG
25894148 GTAATTTTACAAGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
** *
25894175 AAAATTTTACAGGTCGAGGGTATTTCA
1 GTAATTTTACAAGTCGAGGGTATTTCA
* * * **
25894202 GTAATTTCATAAATC-AGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTCA
* * *
25894229 GTAATTTTACAA-ACTAGGGGTATTT-T
1 GTAATTTTACAAGTCGA-GGGTATTTCA
* * * **
25894255 GATAATTTTAAAAATAG-GGGTATTTTG
1 G-TAATTTTACAAGTCGAGGGTATTTCA
* * *
25894282 GTAATTTTACAA-ACTAGGGGTATTT-T
1 GTAATTTTACAAGTCGA-GGGTATTTCA
* * **
25894308 GATAATTTTACAA-ACCAGGGGTATTTTG
1 G-TAATTTTACAAGTCGA-GGGTATTTCA
* * **
25894336 GTAATTTTACAA-ACCAGGGGTATTTTG
1 GTAATTTTACAAGTCGA-GGGTATTTCA
* * **
25894363 GTAATTTTACAA-ACTAAGGGTATTTTG
1 GTAATTTTACAAGTC-GAGGGTATTTCA
* * **
25894390 GTAATTTTACAA-ACTGGGGGTATTTTG
1 GTAATTTTACAAGTC-GAGGGTATTTCA
** * **
25894417 GTAATTTTACAAACCGGGGGTATTTTG
1 GTAATTTTACAAGTCGAGGGTATTTCA
* * * *
25894444 GTAATTTTATAA-ACAAAGGGTATTTTA
1 GTAATTTTACAAGTC-GAGGGTATTTCA
25894471 GTAATTTTACAA
1 GTAATTTTACAA
25894483 ACCAGGGGTA
Statistics
Matches: 259, Mismatches: 37, Indels: 24
0.81 0.12 0.08
Matches are distributed among these distances:
26 23 0.09
27 233 0.90
28 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.39
Consensus pattern (27 bp):
GTAATTTTACAAGTCGAGGGTATTTCA
Found at i:25894250 original size:81 final size:80
Alignment explanation
Indices: 25894093--25894719 Score: 616
Period size: 81 Copynumber: 7.8 Consensus size: 80
25894083 AGGGTAAAAA
** **** * * *
25894093 GGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTAAATCAGGGGTACTTTGGTAATTTTAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAA-CAGGGGTATTTTGGTAATTTTAC
* * *
25894158 -AAGTCGAGGGTATTTC
65 AAACTAG-GGGTATTTT
*** ** ** *
25894174 AAAAATTTTACAGGTCGAGGGTATTTCAGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAA-CAGGGGTATTTTGGTAATTTTAC
25894239 AAACTAGGGGTATTTT
65 AAACTAGGGGTATTTT
* * * * *
25894255 GATAATTTTAAAAATAG-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAAC-AGGGGTATTTTGGTAATTTTAC
*
25894319 AAACCAGGGGTATTTT
65 AAACTAGGGGTATTTT
* * *
25894335 GGTAATTTTACAAA-CCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGGTAATTTTA
1 GGTAATTTTACAAATCGA-GGGTATTTTGGTAATTTTATAAAC-AGGGGTATTTTGGTAATTTTA
*
25894399 CAAACTGGGGGTATTTT
64 CAAACTAGGGGTATTTT
* * * *
25894416 GGTAATTTTACAAACCGGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAAC-AGGGGTATTTTGGTAATTTTAC
*
25894481 AAACCAGGGGTATTTT
65 AAACTAGGGGTATTTT
** * * * *
25894497 GGTAATTTTGTAAA-CTAAGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTGATTTTA
1 GGTAATTTTACAAATC-GAGGGTATTTTGGTAATTTTATAAA-CAGGGGTATTTTGGTAATTTTA
* * * *
25894561 TAAACCAAGGGTATTCT
64 CAAACTAGGGGTATTTT
* * * * *
25894578 AGTAATTTTACAAACCAAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTAC
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAA-CAGGGGTATTTTGGTAATTTTAC
25894643 AAACTAGGGGTATTTT
65 AAACTAGGGGTATTTT
* * * * * *
25894659 GGTGATTTTATAAACCAAGGGT-TTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
1 GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAA-CAGGGGTATTTTGGTAATTT
25894720 GGTAAACTAA
Statistics
Matches: 462, Mismatches: 76, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
79 1 0.00
80 103 0.22
81 351 0.76
82 7 0.02
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (80 bp):
GGTAATTTTACAAATCGAGGGTATTTTGGTAATTTTATAAACAGGGGTATTTTGGTAATTTTACA
AACTAGGGGTATTTT
Found at i:25894726 original size:27 final size:27
Alignment explanation
Indices: 25894192--25894719 Score: 691
Period size: 27 Copynumber: 19.6 Consensus size: 27
25894182 TACAGGTCGA
** * * *
25894192 GGGTATTTCAGTAATTTCATAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894219 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* **
25894246 GGGTATTTTGATAATTTTA-AAAATAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894272 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894299 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
25894326 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
25894353 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
**
25894380 GGGTATTTTGGTAATTTTACAAACTGG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894407 GGGTATTTTGGTAATTTTACAAACCGG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
25894434 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894461 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** * *
25894488 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894515 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
25894542 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
25894569 GGGTATTCTAGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
25894596 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894623 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
25894650 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
25894677 GGGT-TTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
25894703 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
25894720 GGTAAACTAA
Statistics
Matches: 438, Mismatches: 61, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
26 46 0.11
27 392 0.89
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:25895607 original size:27 final size:27
Alignment explanation
Indices: 25895577--25895637 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
25895567 GGTCTTTCAA
25895577 TAATTTTCC-ATATC-AGGGGTATTTTGG
1 TAATTTTCCTA-ATCGA-GGGTATTTTGG
*
25895604 TAATTTTTCTAATCGAGGGTATTTTGG
1 TAATTTTCCTAATCGAGGGTATTTTGG
25895631 TAATTTT
1 TAATTTT
25895638 GTAAACCAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 29 0.94
28 2 0.06
ACGTcount: A:0.23, C:0.08, G:0.20, T:0.49
Consensus pattern (27 bp):
TAATTTTCCTAATCGAGGGTATTTTGG
Found at i:25898601 original size:22 final size:22
Alignment explanation
Indices: 25898576--25898640 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
25898566 GTAAATACGT
* *
25898576 TTGGCACACATCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
25898598 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
25898620 TTGGCACAAAGCCATAATCAG
1 TTGGCACAAAGCCATAATCAG
25898641 AATAATTGGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.06
22 32 0.89
23 2 0.06
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:25898841 original size:41 final size:41
Alignment explanation
Indices: 25898782--25898904 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
25898772 TAAAAGCCAC
* * *
25898782 CGGTGAATCCACGATCGTCAAGCAACCATGCGATCCTTAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
*
25898823 CGGTGGATTCACGGTCGTCAAGCAACCATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
* * * *
25898864 CCGTGGATCCATGGTCATCAAGCAACTATGCGATCCTCAAT
1 CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
25898905 TTCTTCCTCC
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 73 1.00
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (41 bp):
CGGTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
Found at i:25899194 original size:27 final size:27
Alignment explanation
Indices: 25899142--25899503 Score: 261
Period size: 27 Copynumber: 13.4 Consensus size: 27
25899132 TTTCACCCTA
* * * * *
25899142 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
25899169 CAAGGGTATTTCGATAATTTTGCAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
*
25899196 CAATGGTATTTCT-GTAATTTTTTG-AAAGT
1 CAAGGGTATTT-TGGTAA--TTTTGCAAA-T
* *
25899225 CAAGGGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTGCAAAT
** *
25899252 CAAGGGTATTTTTATAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * * *
25899279 CAAGGGTCTTTCGGTTATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
25899306 CATGGATATTTT-GTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* **
25899332 TAAGGGTATTTTGGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * *
25899359 TAGGGGTATTTTGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* *
25899385 CTAAAGGTATTTTGGTAATTTT-AAGAAT
1 C-AAGGGTATTTTGGTAATTTTGCA-AAT
*
25899413 CAAGGGTATTTTGGTAATTTTGCTAAT
1 CAAGGGTATTTTGGTAATTTTGCAAAT
* * * *
25899440 CGAGGGTCTTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
** * * *
25899467 CAAGGGTA-TTCAGTAACTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGCAAAT
25899493 CAAGGGTATTT
1 CAAGGGTATTT
25899504 CAGTAATTCT
Statistics
Matches: 275, Mismatches: 48, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
26 46 0.17
27 202 0.73
28 7 0.03
29 20 0.07
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGCAAAT
Found at i:25899475 original size:81 final size:80
Alignment explanation
Indices: 25899142--25899503 Score: 260
Period size: 80 Copynumber: 4.5 Consensus size: 80
25899132 TTTCACCCTA
* * * * * * * * * *
25899142 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTGCAAACCAATGGTATTT
1 CAAGGGTATTTT-GTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTCTTT
** *
25899207 CT-GTAATTTTTTGAAAGT
65 -TGGTAA-TTTTACAAA-C
* ** ** *
25899225 CAAGGGTATTTCTATAATTTTGTAAATCAAGGGTATTTTTATAATTTTCCAAATCAAGGGTCTTT
1 CAAGGGTATTT-TGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTCTTT
* * * *
25899290 CGGTTATTTTCCAAAT
65 TGGTAATTTTACAAAC
* * * * * * *
25899306 CATGGATATTTTGTAATTTTACAAATTAAGGGTATTTTGGTAATTTCACAAATTAGGGGTATTTT
1 CAAGGGTATTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTCTTTT
25899371 GGTAATTTTACAAAC
66 GGTAATTTTACAAAC
* * * * *
25899386 TAAAGGTATTTTGGTAATTTTA-AGAATCAAGGGTATTTTGGTAATTTTGCTAATCGAGGGTCTT
1 CAAGGGTATTTT-GTAATTTTACA-AATCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTCTT
**
25899450 TTGGTAATTTTGTAAAC
64 TTGGTAATTTTACAAAC
** * ** *
25899467 CAAGGGTATTCAGTAACTTTGTAAACCAAGGGTATTT
1 CAAGGGTATTTTGTAATTTTACAAATCAAGGGTATTT
25899504 CAGTAATTCT
Statistics
Matches: 219, Mismatches: 55, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
80 83 0.38
81 75 0.34
82 7 0.03
83 53 0.24
84 1 0.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.41
Consensus pattern (80 bp):
CAAGGGTATTTTGTAATTTTACAAATCAAGGGTATTTTGGTAATTTTACAAATCAAGGGTCTTTT
GGTAATTTTACAAAC
Found at i:25899488 original size:26 final size:27
Alignment explanation
Indices: 25899453--25899509 Score: 98
Period size: 26 Copynumber: 2.1 Consensus size: 27
25899443 GGGTCTTTTG
*
25899453 GTAATTTTGTAAACCAAGGGTA-TTCA
1 GTAACTTTGTAAACCAAGGGTATTTCA
25899479 GTAACTTTGTAAACCAAGGGTATTTCA
1 GTAACTTTGTAAACCAAGGGTATTTCA
25899506 GTAA
1 GTAA
25899510 TTCTACCCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 21 0.72
27 8 0.28
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.33
Consensus pattern (27 bp):
GTAACTTTGTAAACCAAGGGTATTTCA
Found at i:25905692 original size:42 final size:43
Alignment explanation
Indices: 25905640--25905788 Score: 146
Period size: 42 Copynumber: 3.5 Consensus size: 43
25905630 TATCCCAAAT
* * *
25905640 ATGGTCTTACATGTTATCACATATTGATGCCACTGTCCCA-AC
1 ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
* * * *
25905682 AAGGTCTTACA-GAAAATTGA-ATAACGATGCCAATGTCCCAGAC
1 ATGGTCTTACATG-TAA-TCACATATCGATGCCAATGTCCCAGAC
* *
25905725 ATGGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGA-
1 ATGGTCTTACATGTAATCACATAT-CGATGCCAATGTCCCAGAC
*
25905767 ATGGTCTTACATGTTATCACAT
1 ATGGTCTTACATGTAATCACAT
25905789 CTCGGTAACC
Statistics
Matches: 86, Mismatches: 14, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
41 1 0.01
42 50 0.58
43 34 0.40
44 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:25924281 original size:40 final size:40
Alignment explanation
Indices: 25924237--25924424 Score: 299
Period size: 40 Copynumber: 4.7 Consensus size: 40
25924227 GCTACTTGCT
*
25924237 CAAATGCCTTTGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
25924277 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
25924317 CAAATGCCTTCGGGACTTAGCTCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
25924357 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
25924396 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
25924425 CATCCGAATA
Statistics
Matches: 137, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
38 1 0.01
39 33 0.24
40 102 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:25924415 original size:119 final size:119
Alignment explanation
Indices: 25924204--25924424 Score: 322
Period size: 119 Copynumber: 1.9 Consensus size: 119
25924194 AAACCAAGTA
* * * * *
25924204 CCTTCGGAATTTAGTCGGATATAGCTACTTGCTCAAATGCCTTTGGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGTCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
25924269 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
25924323 CCTTCGGGACTTAGCTCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAG-TCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
25924385 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
25924425 CATCCGAATA
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
118 1 0.01
119 62 0.68
120 28 0.31
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.27
Consensus pattern (119 bp):
CCTTCGGAACTTAGTCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:25933654 original size:40 final size:40
Alignment explanation
Indices: 25933582--25933694 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 40
25933572 TATCTAGCAC
* *
25933582 AGCCTGCAGGTTTTTAA-CCCGGATGTC-ATTCCAGCACGA
1 AGCCTGCAGGTCTTTAAGCCCGGAT-ACAATTCCAGCACGA
*
25933621 AGCCTGCAGATCTTTAAGCCCGGATACAATTCCAGCACGA
1 AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCACGA
*
25933661 AGCCTGCGGGTCTTTAAGCCCGGATACAATTCCA
1 AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCA
25933695 CATCAAATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
39 16 0.24
40 51 0.76
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (40 bp):
AGCCTGCAGGTCTTTAAGCCCGGATACAATTCCAGCACGA
Found at i:25941320 original size:40 final size:38
Alignment explanation
Indices: 25941264--25941409 Score: 168
Period size: 40 Copynumber: 3.7 Consensus size: 38
25941254 CACAGCTTGC
* * *
25941264 AGGTTTTTAA-CCCGGATGACATTCTAGCATGAAGCCTG
1 AGGTCTTTAAGCCCGGAT-ACATTCCAGCACGAAGCCTG
*
25941302 TGGATCTTTAAGCCCGGATACAATTCCAGCACGAAGCCTG
1 AGG-TCTTTAAGCCCGGATAC-ATTCCAGCACGAAGCCTG
* *
25941342 CAGCTCTTTAAGCCCGGATATAATTCCAGCACGAAGCCTG
1 -AGGTCTTTAAGCCCGGATA-CATTCCAGCACGAAGCCTG
25941382 CAGGTCTTTAAGCCCGGATACAATTCCA
1 -AGGTCTTTAAGCCCGGATAC-ATTCCA
25941410 CATCAAATAA
Statistics
Matches: 93, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 8 0.09
40 82 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (38 bp):
AGGTCTTTAAGCCCGGATACATTCCAGCACGAAGCCTG
Found at i:25949750 original size:27 final size:26
Alignment explanation
Indices: 25949710--25949872 Score: 168
Period size: 27 Copynumber: 6.1 Consensus size: 26
25949700 GCCGAAATGG
25949710 TGACTGAAATACCTCCATAGGGTAAAA
1 TGACTGAAATACC-CCATAGGGTAAAA
* *
25949737 TAACTGAAATACCTCATAGGGTAAAA
1 TGACTGAAATACCCCATAGGGTAAAA
25949763 TGA-TCGAAATACCCCCATAGGGTAAAA
1 TGACT-GAAATA-CCCCATAGGGTAAAA
* * *
25949790 TGACCGAAATACCCCTACAAGGTAAAA
1 TGACTGAAATACCCC-ATAGGGTAAAA
*
25949817 TGACCGAAATACCCTCATAGGGTAAAA
1 TGACTGAAATACCC-CATAGGGTAAAA
* * * *
25949844 TGTC-GTAATACCCCTGTAAGGTAAAA
1 TGACTGAAATACCCC-ATAGGGTAAAA
25949870 TGA
1 TGA
25949873 TTTATTTCCC
Statistics
Matches: 116, Mismatches: 14, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
25 2 0.02
26 43 0.37
27 70 0.60
28 1 0.01
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (26 bp):
TGACTGAAATACCCCATAGGGTAAAA
Found at i:25949787 original size:53 final size:54
Alignment explanation
Indices: 25949710--25949872 Score: 186
Period size: 53 Copynumber: 3.1 Consensus size: 54
25949700 GCCGAAATGG
* * * * * *
25949710 TGACTGAAATACCTCCATAGGGTAAAATAACTGAAATACCTC-ATAGGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCTACAAGGTAAAA
* *
25949763 TGATCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTACAAGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCTACAAGGTAAAA
* ** * **
25949817 TGACCGAAATACCCTCATAGGGTAAAAT-GTCGTAATACCCCTGTAAGGTAAAA
1 TGACCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCTACAAGGTAAAA
25949870 TGA
1 TGA
25949873 TTTATTTCCC
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
53 59 0.63
54 35 0.37
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (54 bp):
TGACCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCCTACAAGGTAAAA
Found at i:25949856 original size:26 final size:27
Alignment explanation
Indices: 25949710--25949845 Score: 172
Period size: 27 Copynumber: 5.1 Consensus size: 27
25949700 GCCGAAATGG
*
25949710 TGACTGAAATA-CCTCCATAGGGTAAAA
1 TGACCGAAATACCCT-CATAGGGTAAAA
* *
25949737 TAACTGAAATA-CCTCATAGGGTAAAA
1 TGACCGAAATACCCTCATAGGGTAAAA
* *
25949763 TGATCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCTCATAGGGTAAAA
25949790 TGACCGAAATACCCCTACA-A-GGTAAAA
1 TGACCGAAATA-CCCT-CATAGGGTAAAA
25949817 TGACCGAAATACCCTCATAGGGTAAAA
1 TGACCGAAATACCCTCATAGGGTAAAA
25949844 TG
1 TG
25949846 TCGTAATACC
Statistics
Matches: 97, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
25 2 0.02
26 25 0.26
27 64 0.66
28 4 0.04
29 2 0.02
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.20
Consensus pattern (27 bp):
TGACCGAAATACCCTCATAGGGTAAAA
Found at i:25951530 original size:15 final size:16
Alignment explanation
Indices: 25951502--25951531 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
25951492 CGAAGTGCCG
25951502 AAATACTGAAAAATTA
1 AAATACTGAAAAATTA
25951518 AAATACT-AAAAATT
1 AAATACTGAAAAATT
25951532 TGAAAGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.63, C:0.07, G:0.03, T:0.27
Consensus pattern (16 bp):
AAATACTGAAAAATTA
Found at i:25951793 original size:29 final size:28
Alignment explanation
Indices: 25951757--25951874 Score: 155
Period size: 28 Copynumber: 4.1 Consensus size: 28
25951747 TAGGCTTAAC
*
25951757 GGGCCATATAAATGTGATTTGGGCCTAAT
1 GGGCCATATAAATATGA-TTGGGCCTAAT
* **
25951786 GGGCCATATATAGGTGATTTGGGCCTAAT
1 GGGCCATATAAATATGA-TTGGGCCTAAT
*
25951815 GGGCCATATAAATATGATTGGGCTTAAT
1 GGGCCATATAAATATGATTGGGCCTAAT
* *
25951843 GGGCCATATGAATATGATTGGGCTTAAT
1 GGGCCATATAAATATGATTGGGCCTAAT
25951871 GGGC
1 GGGC
25951875 TAGATACAGG
Statistics
Matches: 82, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
28 41 0.50
29 41 0.50
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.31
Consensus pattern (28 bp):
GGGCCATATAAATATGATTGGGCCTAAT
Found at i:25951844 original size:28 final size:29
Alignment explanation
Indices: 25951749--25951874 Score: 166
Period size: 29 Copynumber: 4.4 Consensus size: 29
25951739 AATGGGACTA
* *
25951749 GGCTTAACGGGCCATATAAATGTGATTTG
1 GGCTTAATGGGCCATATAAATATGATTTG
* * **
25951778 GGCCTAATGGGCCATATATAGGTGATTTG
1 GGCTTAATGGGCCATATAAATATGATTTG
*
25951807 GGCCTAATGGGCCATATAAATATGA-TTG
1 GGCTTAATGGGCCATATAAATATGATTTG
*
25951835 GGCTTAATGGGCCATATGAATATGA-TTG
1 GGCTTAATGGGCCATATAAATATGATTTG
25951863 GGCTTAATGGGC
1 GGCTTAATGGGC
25951875 TAGATACAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
28 41 0.47
29 47 0.53
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.30
Consensus pattern (29 bp):
GGCTTAATGGGCCATATAAATATGATTTG
Found at i:25951861 original size:57 final size:56
Alignment explanation
Indices: 25951757--25951874 Score: 159
Period size: 57 Copynumber: 2.1 Consensus size: 56
25951747 TAGGCTTAAC
*
25951757 GGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATTTGGGCCTAAT
1 GGGCCATATAAATATGATTTGGGCCTAATGGGCCATATATA-GTGA-TTGGGCCTAAT
* *
25951815 GGGCCATATAAATATGA-TTGGGCTTAATGGGCCATATGAATA-TGATTGGGCTTAAT
1 GGGCCATATAAATATGATTTGGGCCTAATGGGCCATAT--ATAGTGATTGGGCCTAAT
25951871 GGGC
1 GGGC
25951875 TAGATACAGG
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
56 14 0.25
57 22 0.40
58 16 0.29
59 3 0.05
ACGTcount: A:0.27, C:0.13, G:0.30, T:0.31
Consensus pattern (56 bp):
GGGCCATATAAATATGATTTGGGCCTAATGGGCCATATATAGTGATTGGGCCTAAT
Found at i:25961013 original size:18 final size:18
Alignment explanation
Indices: 25960990--25961026 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
25960980 TAGGACTTGC
25960990 GTACTGTTTACTGATACT
1 GTACTGTTTACTGATACT
*
25961008 GTACTGTTTACTGTTACT
1 GTACTGTTTACTGATACT
25961026 G
1 G
25961027 AATTGGGCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.16, G:0.19, T:0.46
Consensus pattern (18 bp):
GTACTGTTTACTGATACT
Found at i:25964101 original size:27 final size:26
Alignment explanation
Indices: 25964066--25964258 Score: 183
Period size: 27 Copynumber: 7.2 Consensus size: 26
25964056 GCCGAAATGG
*
25964066 TGACTGAAATACCCCTATATGGTAAAA
1 TGACCGAAATACCCCTATA-GGTAAAA
*
25964093 TGACCGAAATACCTCTATAGGGTAAAA
1 TGACCGAAATACCCCTATA-GGTAAAA
*
25964120 TGACCAAAATA-CCCTCATAGGTTAAAA
1 TGACCGAAATACCCCT-ATAGG-TAAAA
* *
25964147 TGAACAAAATA-CCCTCATAGGTTAAAA
1 TGACCGAAATACCCCT-ATAGG-TAAAA
*
25964174 TGACCGAAATACCCTTATAAGGTAAAA
1 TGACCGAAATACCCCTAT-AGGTAAAA
*
25964201 TGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCCTATA-GGTAAAA
* * * * *
25964228 TGTCTGTAATACCCTTGTGAGGTAAAA
1 TGACCGAAATACCCCTAT-AGGTAAAA
25964255 TGAC
1 TGAC
25964259 GGATTTGCCC
Statistics
Matches: 142, Mismatches: 18, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.04
27 129 0.91
28 7 0.05
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (26 bp):
TGACCGAAATACCCCTATAGGTAAAA
Found at i:25964239 original size:54 final size:54
Alignment explanation
Indices: 25964066--25964258 Score: 226
Period size: 54 Copynumber: 3.6 Consensus size: 54
25964056 GCCGAAATGG
* * * * *
25964066 TGACTGAAATACCCCTATATGGTAAAATGACCGAAATACCTCTATAGGGTAAAA
1 TGACCGAAATACCCTTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
* * * * * *
25964120 TGACCAAAATACCCTCAT-AGGTTAAAATGAACAAAATACCCTCATAGGTTAAAA
1 TGACCGAAATACCCTTATAAGG-TAAAATGACCGAAATACCCCCATAGGGTAAAA
25964174 TGACCGAAATACCCTTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
1 TGACCGAAATACCCTTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
* * * * *
25964228 TGTCTGTAATACCCTTGTGAGGTAAAATGAC
1 TGACCGAAATACCCTTATAAGGTAAAATGAC
25964259 GGATTTGCCC
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
53 2 0.02
54 110 0.96
55 3 0.03
ACGTcount: A:0.41, C:0.20, G:0.16, T:0.23
Consensus pattern (54 bp):
TGACCGAAATACCCTTATAAGGTAAAATGACCGAAATACCCCCATAGGGTAAAA
Found at i:25964270 original size:81 final size:81
Alignment explanation
Indices: 25964072--25964229 Score: 232
Period size: 81 Copynumber: 2.0 Consensus size: 81
25964062 ATGGTGACTG
*
25964072 AAATACCC-CTATATGG-TAAAATGACCGAAATA-CCTCTATAGGGTAAAATGACCAAAATACCC
1 AAATACCCTC-ATA-GGTTAAAATGACCGAAATACCCT-TATAAGGTAAAATGACCAAAATACCC
* *
25964134 TCATAGGTTAAAATGAACA
63 CCATAGGGTAAAATGAACA
*
25964153 AAATACCCTCATAGGTTAAAATGACCGAAATACCCTTATAAGGTAAAATGACCGAAATACCCCCA
1 AAATACCCTCATAGGTTAAAATGACCGAAATACCCTTATAAGGTAAAATGACCAAAATACCCCCA
25964218 TAGGGTAAAATG
66 TAGGGTAAAATG
25964230 TCTGTAATAC
Statistics
Matches: 70, Mismatches: 4, Indels: 6
0.88 0.05 0.08
Matches are distributed among these distances:
80 2 0.03
81 64 0.91
82 4 0.06
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.22
Consensus pattern (81 bp):
AAATACCCTCATAGGTTAAAATGACCGAAATACCCTTATAAGGTAAAATGACCAAAATACCCCCA
TAGGGTAAAATGAACA
Found at i:25964613 original size:23 final size:24
Alignment explanation
Indices: 25964587--25964631 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
25964577 ATATCCCCAC
*
25964587 ATGGAGTGTAG-GGTTGGATGGAG
1 ATGGAGTGTAGAGGCTGGATGGAG
*
25964610 ATGGTGTGTAGAGGCTGGATGG
1 ATGGAGTGTAGAGGCTGGATGG
25964632 GTAAGACTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.20, C:0.02, G:0.51, T:0.27
Consensus pattern (24 bp):
ATGGAGTGTAGAGGCTGGATGGAG
Found at i:25967197 original size:43 final size:43
Alignment explanation
Indices: 25967132--25967298 Score: 180
Period size: 43 Copynumber: 3.9 Consensus size: 43
25967122 AGCTCATACA
* * *
25967132 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
* * * *
25967174 ATGCCACTGTCCCAGACAAGGTCTTACACT-AAATCGA-ATAGCG
1 ATGCCAATGTCCCAGACATGGTCTTACA-TGTAATC-ACATATCG
* * *
25967217 ATGCCAATGTCTCAGACATGGTCTTACATGCAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATAT-CG
*
25967260 ATGCCAATGTCCCAAACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACAT
25967299 CTTGGTATCC
Statistics
Matches: 102, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
42 8 0.08
43 92 0.90
44 2 0.02
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:25967314 original size:24 final size:22
Alignment explanation
Indices: 25967287--25967332 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
25967277 ATGGTCTTAC
25967287 ATGTAATCACATCTTGGTATCCTA
1 ATGTAATCACAT-TT-GTATCCTA
* *
25967311 ATGTCATGACATTTGTATCCTA
1 ATGTAATCACATTTGTATCCTA
25967333 TACTATTCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 2 0.10
24 10 0.50
ACGTcount: A:0.28, C:0.20, G:0.13, T:0.39
Consensus pattern (22 bp):
ATGTAATCACATTTGTATCCTA
Found at i:25975278 original size:18 final size:19
Alignment explanation
Indices: 25975255--25975293 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
25975245 TTTATCTCAA
*
25975255 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
25975273 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
25975292 TT
1 TT
25975294 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:25975331 original size:30 final size:30
Alignment explanation
Indices: 25975287--25975345 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
25975277 TTGTTCACAT
**
25975287 TCTTTTTCTCTCTCAAACTCTTTTTCATTC
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
***
25975317 TCTTTTTCAATCTCATTTTCTTTTTCATT
1 TCTTTTTCAATCTCAAACTCTTTTTCATT
25975346 TTCTACTTGT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.14, C:0.25, G:0.00, T:0.61
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAACTCTTTTTCATTC
Found at i:25975449 original size:21 final size:22
Alignment explanation
Indices: 25975424--25975474 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
25975414 TTTGCCTCTA
25975424 TTTTCTTTTTATTTTG-TTTTC
1 TTTTCTTTTTATTTTGCTTTTC
* *
25975445 TTTTC--CTTCTTTTGCCTTTTC
1 TTTTCTTTTTATTTTG-CTTTTC
25975466 TTTTCTTTT
1 TTTTCTTTT
25975475 CTTTGTTTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 6
0.72 0.09 0.19
Matches are distributed among these distances:
19 7 0.30
21 15 0.65
23 1 0.04
ACGTcount: A:0.02, C:0.18, G:0.04, T:0.76
Consensus pattern (22 bp):
TTTTCTTTTTATTTTGCTTTTC
Found at i:25976418 original size:12 final size:12
Alignment explanation
Indices: 25976403--25976434 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
25976393 TCACTTCAAT
25976403 TTTTTTTTCGAA
1 TTTTTTTTCGAA
*
25976415 TTTTTTTCCGAA
1 TTTTTTTTCGAA
25976427 TTTTTTTT
1 TTTTTTTT
25976435 AACTTGTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.72
Consensus pattern (12 bp):
TTTTTTTTCGAA
Found at i:25980232 original size:18 final size:19
Alignment explanation
Indices: 25980209--25980247 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
25980199 TTTACCTCAA
*
25980209 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
25980227 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
25980246 TT
1 TT
25980248 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:25980275 original size:12 final size:12
Alignment explanation
Indices: 25980258--25980315 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
25980248 CTCTCTCAAA
25980258 CTCTTTTTCATT
1 CTCTTTTTCATT
*
25980270 CTCTTTTTCAAT
1 CTCTTTTTCATT
* *
25980282 CTCATTTTCTTT
1 CTCTTTTTCATT
* *
25980294 GTCATTTTCATT
1 CTCTTTTTCATT
* *
25980306 TTGTTTTTCA
1 CTCTTTTTCA
25980316 AAGGCTTTTT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
12 37 1.00
ACGTcount: A:0.12, C:0.21, G:0.03, T:0.64
Consensus pattern (12 bp):
CTCTTTTTCATT
Found at i:25980286 original size:18 final size:18
Alignment explanation
Indices: 25980265--25980316 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
25980255 AAACTCTTTT
*
25980265 TCATTCTCTTTTTCAATC
1 TCATTTTCTTTTTCAATC
* * *
25980283 TCATTTTCTTTGTCATTT
1 TCATTTTCTTTTTCAATC
*
25980301 TCATTTTGTTTTTCAA
1 TCATTTTCTTTTTCAA
25980317 AGGCTTTTTC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.15, C:0.19, G:0.04, T:0.62
Consensus pattern (18 bp):
TCATTTTCTTTTTCAATC
Found at i:25980337 original size:13 final size:12
Alignment explanation
Indices: 25980309--25980340 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
25980299 TTTCATTTTG
25980309 TTTTTCAAAGGC
1 TTTTTCAAAGGC
25980321 TTTTTCAAAGGC
1 TTTTTCAAAGGC
25980333 TTTTTCAA
1 TTTTTCAA
25980341 GTTCTCTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.16, G:0.12, T:0.47
Consensus pattern (12 bp):
TTTTTCAAAGGC
Found at i:25980414 original size:15 final size:15
Alignment explanation
Indices: 25980402--25980433 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25980392 TTCTTTTTAT
25980402 TTCGTTTCCTTTTTC
1 TTCGTTTCCTTTTTC
*
25980417 TTCTTTTCCTTTTTC
1 TTCGTTTCCTTTTTC
25980432 TT
1 TT
25980434 TTCTTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.25, G:0.03, T:0.72
Consensus pattern (15 bp):
TTCGTTTCCTTTTTC
Found at i:25981386 original size:12 final size:12
Alignment explanation
Indices: 25981364--25981410 Score: 76
Period size: 12 Copynumber: 3.8 Consensus size: 12
25981354 TTTTCACTTC
25981364 AATTTTGTTTTCG
1 AATTTT-TTTTCG
*
25981377 AATTTTTTTTAG
1 AATTTTTTTTCG
25981389 AATTTTTTTTCG
1 AATTTTTTTTCG
25981401 AATTTTTTTT
1 AATTTTTTTT
25981411 AACTTGTATA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 26 0.81
13 6 0.19
ACGTcount: A:0.19, C:0.04, G:0.09, T:0.68
Consensus pattern (12 bp):
AATTTTTTTTCG
Found at i:25981403 original size:24 final size:25
Alignment explanation
Indices: 25981364--25981411 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 25
25981354 TTTTCACTTC
25981364 AATTTTGTTTTCGAATTTTTTTTAG
1 AATTTTGTTTTCGAATTTTTTTTAG
25981389 AATTTT-TTTTCGAATTTTTTTTA
1 AATTTTGTTTTCGAATTTTTTTTA
25981412 ACTTGTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.21, C:0.04, G:0.08, T:0.67
Consensus pattern (25 bp):
AATTTTGTTTTCGAATTTTTTTTAG
Found at i:25985126 original size:18 final size:19
Alignment explanation
Indices: 25985103--25985141 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
25985093 TTTATCTCAA
*
25985103 TTTCTTTTTC-CACTCTTT
1 TTTCTTGTTCACACTCTTT
*
25985121 TTTCTTGTTCACATTCTTT
1 TTTCTTGTTCACACTCTTT
25985140 TT
1 TT
25985142 CTCTCTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.08, C:0.23, G:0.03, T:0.67
Consensus pattern (19 bp):
TTTCTTGTTCACACTCTTT
Found at i:25985169 original size:30 final size:30
Alignment explanation
Indices: 25985135--25985201 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
25985125 TTGTTCACAT
**
25985135 TCTTTTTCTCTCTCAAACTCTTTTTCATTC
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
*** *
25985165 TCTTTTTCAATCTCATTTTCTTTTTCATTT
1 TCTTTTTCAATCTCAAACTCTTTTTCATTC
25985195 TCTTTTT
1 TCTTTTT
25985202 GTTTTTCAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (30 bp):
TCTTTTTCAATCTCAAACTCTTTTTCATTC
Found at i:25985201 original size:18 final size:18
Alignment explanation
Indices: 25985159--25985210 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
25985149 AAACTCTTTT
*
25985159 TCATTCTCTTTTTCAATC
1 TCATTTTCTTTTTCAATC
* *
25985177 TCATTTTCTTTTTCATTT
1 TCATTTTCTTTTTCAATC
* *
25985195 TCTTTTTGTTTTTCAA
1 TCATTTTCTTTTTCAA
25985211 AGGGTTTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.19, G:0.02, T:0.65
Consensus pattern (18 bp):
TCATTTTCTTTTTCAATC
Found at i:25985208 original size:12 final size:12
Alignment explanation
Indices: 25985177--25985201 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25985167 TTTTTCAATC
25985177 TCATTTTCTTTT
1 TCATTTTCTTTT
25985189 TCATTTTCTTTT
1 TCATTTTCTTTT
25985201 T
1 T
25985202 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:25985280 original size:5 final size:5
Alignment explanation
Indices: 25985270--25985325 Score: 53
Period size: 5 Copynumber: 11.0 Consensus size: 5
25985260 CTTTTGCCTC
* *
25985270 TCTTT TCTTT T-TATT TCGTTT TCTTT T-TCT TCTTT TGCTTT TTTTT
1 TCTTT TCTTT TCT-TT TC-TTT TCTTT TCTTT TCTTT T-CTTT TCTTT
25985316 TCTTT TCTTT
1 TCTTT TCTTT
25985326 GTTTTCTCGT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
4 4 0.10
5 28 0.67
6 9 0.21
7 1 0.02
ACGTcount: A:0.02, C:0.16, G:0.04, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:25985330 original size:15 final size:14
Alignment explanation
Indices: 25985270--25985332 Score: 72
Period size: 16 Copynumber: 4.2 Consensus size: 14
25985260 CTTTTGCCTC
25985270 TCTTTTCTTTTTATT
1 TCTTTTCTTTTT-TT
*
25985285 TCGTTTTCTTTTTCT
1 TC-TTTTCTTTTTTT
25985300 TCTTTTGCTTTTTTTT
1 TCTTTT-C-TTTTTTT
*
25985316 TCTTTTCTTTGTTT
1 TCTTTTCTTTTTTT
25985330 TCT
1 TCT
25985333 CGTTACAAGA
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
14 13 0.31
15 7 0.17
16 22 0.52
ACGTcount: A:0.02, C:0.16, G:0.05, T:0.78
Consensus pattern (14 bp):
TCTTTTCTTTTTTT
Found at i:25986279 original size:11 final size:12
Alignment explanation
Indices: 25986249--25986283 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
25986239 TTTTCACTTC
25986249 AATTTTGTTTTCG
1 AATTTT-TTTTCG
25986262 AATTTTTTTTCG
1 AATTTTTTTTCG
25986274 AATTTTTTTT
1 AATTTTTTTT
25986284 AACTTGTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 16 0.73
13 6 0.27
ACGTcount: A:0.17, C:0.06, G:0.09, T:0.69
Consensus pattern (12 bp):
AATTTTTTTTCG
Found at i:25993437 original size:9 final size:9
Alignment explanation
Indices: 25993402--25993434 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
25993392 GATCTATAAG
25993402 ACAGAGGAA
1 ACAGAGGAA
25993411 ACAGAGGAA
1 ACAGAGGAA
*
25993420 ACAGAGTAA
1 ACAGAGGAA
25993429 ACAGAG
1 ACAGAG
25993435 TAAGCATTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.55, C:0.12, G:0.30, T:0.03
Consensus pattern (9 bp):
ACAGAGGAA
Found at i:25993892 original size:38 final size:37
Alignment explanation
Indices: 25993819--25993897 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
25993809 TATTACGAAA
* *
25993819 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
25993856 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
25993894 TCTT
1 TCTT
25993898 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:25994103 original size:47 final size:47
Alignment explanation
Indices: 25994016--25994404 Score: 625
Period size: 47 Copynumber: 8.2 Consensus size: 47
25994006 CCCTTCGGGA
* * * * * * *
25994016 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*** *
25994063 CCCGTCACGTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25994110 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25994159 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
25994206 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25994254 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25994301 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25994349 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25994396 CTTATCACA
1 CTTATCACA
25994405 ATTTAGAATT
Statistics
Matches: 319, Mismatches: 19, Indels: 8
0.92 0.05 0.02
Matches are distributed among these distances:
47 182 0.57
48 92 0.29
49 45 0.14
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25994253 original size:95 final size:94
Alignment explanation
Indices: 25994016--25994404 Score: 625
Period size: 95 Copynumber: 4.1 Consensus size: 94
25994006 CCCTTCGGGA
* * * * * * * *** *
25994016 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACGTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
25994081 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
25994110 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
25994175 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
25994206 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
25994271 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
25994301 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
25994366 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
25994396 CTTATCACA
1 CTTATCACA
25994405 ATTTAGAATT
Statistics
Matches: 277, Mismatches: 15, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
94 13 0.05
95 183 0.66
96 77 0.28
97 4 0.01
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:25994357 original size:142 final size:141
Alignment explanation
Indices: 25994016--25994404 Score: 634
Period size: 142 Copynumber: 2.7 Consensus size: 141
25994006 CCCTTCGGGA
* * * * * * * ** *
25994016 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACGTATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
25994081 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
25994146 TCGGCCATTAGGC
129 TCGGCCATTAGGC
*
25994159 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTA-TCACATATATACA
25994224 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
25994289 CGGCCATTAGGC
130 CGGCCATTAGGC
*
25994301 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACA
25994366 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
65 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
25994405 ATTTAGAATT
Statistics
Matches: 231, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
142 95 0.41
143 86 0.37
144 50 0.22
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:25997788 original size:40 final size:40
Alignment explanation
Indices: 25997744--25997859 Score: 133
Period size: 40 Copynumber: 2.9 Consensus size: 40
25997734 GAATACATGT
* * *
25997744 CACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* * ***
25997784 CACCAGCACGAATGCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
* **
25997824 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGAT
25997860 TTAGTAACTC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 65 1.00
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.23
Consensus pattern (40 bp):
CACCAGCACGAATGCTCTTCGGAACCTAGCCCGGATATAA
Found at i:25998270 original size:29 final size:29
Alignment explanation
Indices: 25998236--25998307 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
25998226 ATCAACCACG
* *
25998236 CACACTTAGTGCCATGTACTTT-AAACTCA
1 CACACTTAGTGCCATGCA-TTTCAAACCCA
* *
25998265 CACACTTAGTGCCATGCATTTCAAGCCCG
1 CACACTTAGTGCCATGCATTTCAAACCCA
25998294 CACACTTAGTGCCA
1 CACACTTAGTGCCA
25998308 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.28, C:0.32, G:0.14, T:0.26
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAACCCA
Found at i:25998350 original size:43 final size:43
Alignment explanation
Indices: 25998289--25998434 Score: 274
Period size: 43 Copynumber: 3.4 Consensus size: 43
25998279 TGCATTTCAA
25998289 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
25998332 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
25998375 GCTCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
25998418 GCTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
25998435 TGAAAACCAA
Statistics
Matches: 102, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.24
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:25999917 original size:9 final size:9
Alignment explanation
Indices: 25999882--25999914 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
25999872 GATCTATAAG
25999882 ACAGAGGAA
1 ACAGAGGAA
25999891 ACAGAGGAA
1 ACAGAGGAA
*
25999900 ACAGAGTAA
1 ACAGAGGAA
25999909 ACAGAG
1 ACAGAG
25999915 TAAGCATTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.55, C:0.12, G:0.30, T:0.03
Consensus pattern (9 bp):
ACAGAGGAA
Found at i:26000372 original size:38 final size:37
Alignment explanation
Indices: 26000299--26000377 Score: 106
Period size: 38 Copynumber: 2.1 Consensus size: 37
26000289 TATTACGAAA
* *
26000299 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
26000336 TCTTACCCGGACAAAAAT-TCCCACACGTAGTCATCGGG
1 TCTTACCCGGAC-AAAATCT-CCACACGAAGTCATCGGG
26000374 TCTT
1 TCTT
26000378 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
37 13 0.35
38 24 0.65
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:26000574 original size:47 final size:47
Alignment explanation
Indices: 26000496--26000931 Score: 728
Period size: 47 Copynumber: 9.2 Consensus size: 47
26000486 CCCTTCGAGA
* * * * * * *
26000496 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
***
26000543 CCCGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26000590 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26000639 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26000686 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26000734 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26000781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26000828 CTTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26000876 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26000923 CTTATCACA
1 CTTATCACA
26000932 ATTTAGAATT
Statistics
Matches: 368, Mismatches: 17, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
47 230 0.62
48 92 0.25
49 46 0.12
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26000734 original size:95 final size:94
Alignment explanation
Indices: 26000496--26000931 Score: 728
Period size: 95 Copynumber: 4.6 Consensus size: 94
26000486 CCCTTCGAGA
* * * * * * * ***
26000496 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCCGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
26000561 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
26000590 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCATATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
26000655 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
26000686 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA
26000751 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
26000781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA-TCACATATATACA
26000846 CTTTCACATTCATCACATCGGCCATTAGGC
65 CTTTCACATTCATCACATCGGCCATTAGGC
26000876 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACA
26000932 ATTTAGAATT
Statistics
Matches: 324, Mismatches: 14, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 60 0.19
95 182 0.56
96 78 0.24
97 4 0.01
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:26000803 original size:142 final size:142
Alignment explanation
Indices: 26000496--26000931 Score: 748
Period size: 142 Copynumber: 3.1 Consensus size: 142
26000486 CCCTTCGAGA
* * * * * * * **
26000496 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC-CGTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
26000560 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCAC
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCAC
26000625 ATCGGCCATTAGGC
129 ATCGGCCATTAGGC
*
26000639 CTTATCATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
26000704 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
26000769 CGGCCATTAGGC
131 CGGCCATTAGGC
*
26000781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTCACATATATACA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
26000846 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
66 CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
26000911 CGGCCATTAGGC
131 CGGCCATTAGGC
26000923 CTTATCACA
1 CTTATCACA
26000932 ATTTAGAATT
Statistics
Matches: 280, Mismatches: 12, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
142 188 0.67
143 41 0.15
144 51 0.18
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (142 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATTCACATATATACA
CTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACAT
CGGCCATTAGGC
Found at i:26003606 original size:20 final size:20
Alignment explanation
Indices: 26003578--26003615 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
26003568 CTAGGAACTA
26003578 TGTGATCTGAGATCATGAGT
1 TGTGATCTGAGATCATGAGT
* *
26003598 TGTGGTCTGAGTTCATGA
1 TGTGATCTGAGATCATGA
26003616 TATATATTAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.21, C:0.11, G:0.32, T:0.37
Consensus pattern (20 bp):
TGTGATCTGAGATCATGAGT
Found at i:26013797 original size:46 final size:46
Alignment explanation
Indices: 26013738--26013908 Score: 173
Period size: 46 Copynumber: 3.7 Consensus size: 46
26013728 TGATATGTGT
* * *
26013738 GCTAGTGTAAGACATGTCTGCGACATGAAACGGCCATAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATAATATGAGA
* * * *
26013784 GCTAGTGTAAGACATGTATGGGATATGCATCGGCCCTGAGATATTTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAT-A-ATA-TGAGA
* * ** * *
26013832 GCCAGTGTAAGACATGTCTGGGGCATGCATCGGCGTTGAGATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATAATATGAGA
* *
26013878 ACTAGTGTAAGACATGTCTAGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
26013909 AGCCTCACGA
Statistics
Matches: 101, Mismatches: 20, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
45 2 0.02
46 61 0.60
47 1 0.01
48 35 0.35
49 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATAATATGAGA
Found at i:26013933 original size:94 final size:94
Alignment explanation
Indices: 26013738--26013951 Score: 223
Period size: 94 Copynumber: 2.3 Consensus size: 94
26013728 TGATATGTGT
* * *
26013738 GCTAGTGTAAGACATGTCTGCGACATGAAACGGCCATAATATGAGAGCTAGTGTAAGACATGTAT
1 GCTAGTGTAAGACATGTCTGGGACATGAAACGGCCATAAGATGAGAACTAGTGTAAGACATGTAT
* * * * ***
26013803 GGGATATGCATCGGCCCTGAGATATTTAA
66 AGGACATGCATCAGCCCTCAGATAGACAA
* * * * ** * *
26013832 GCCAGTGTAAGACATGTCTGGGGCATGCATCGGCGTTGAGATGAGAACTAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTCTGGGACATGAAACGGCCATAAGATGAGAACTAGTGTAAGACATGTAT
*
26013897 AGGACATGCATCAG-CCTCACGATGGACAA
66 AGGACATGCATCAGCCCTCA-GATAGACAA
* *
26013926 GCTAGTGTAAGACCTATCTGGGACAT
1 GCTAGTGTAAGACATGTCTGGGACAT
26013952 TGGCTGGGAC
Statistics
Matches: 96, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
93 4 0.04
94 92 0.96
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGAAACGGCCATAAGATGAGAACTAGTGTAAGACATGTAT
AGGACATGCATCAGCCCTCAGATAGACAA
Found at i:26019927 original size:45 final size:45
Alignment explanation
Indices: 26019867--26020033 Score: 226
Period size: 45 Copynumber: 3.7 Consensus size: 45
26019857 TGATATGTGT
* *
26019867 GCTAGTGTAATACATGTCTGGGACATGCATCGCCACAATATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATACGAGA
*
26019912 GCTAGTGTAAGACATGCCTGGGACATGCATCGCCACAATACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATACGAGA
* *******
26019957 GCTAGTGTAAGACATGTCTAGGACATGCATCGGTGTTGCGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GCCACAATACGAGA
26020003 GCTAGTGTAAGACATGTCTGGGACATGCATC
1 GCTAGTGTAAGACATGTCTGGGACATGCATC
26020034 AGCCTCGCGA
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
45 71 0.66
46 37 0.34
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCCACAATACGAGA
Found at i:26021348 original size:20 final size:21
Alignment explanation
Indices: 26021310--26021348 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26021300 TCTTAGTGAT
26021310 CACACGGGCATGTTGCCCTTC
1 CACACGGGCATGTTGCCCTTC
26021331 CACACGGGCATG-TGCCCT
1 CACACGGGCATGTTGCCCT
26021349 GTTTTAAGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (21 bp):
CACACGGGCATGTTGCCCTTC
Found at i:26024996 original size:119 final size:120
Alignment explanation
Indices: 26024783--26025004 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
26024773 AATGATGTCC
*
26024783 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
26024848 CGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCT
66 CGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCT
* * * **
26024903 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTG
* * *
26024965 TGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TGCGAGATACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
26025005 AACGAGTAGC
Statistics
Matches: 89, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.79
120 17 0.19
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (120 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCT
Found at i:26025011 original size:40 final size:40
Alignment explanation
Indices: 26024780--26025004 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
26024770 TTGAATGATG
* * * *
26024780 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
26024820 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
26024860 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26024900 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26024939 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26024980 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26025005 AACGAGTAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26025026 original size:79 final size:79
Alignment explanation
Indices: 26024787--26025037 Score: 262
Period size: 79 Copynumber: 3.2 Consensus size: 79
26024777 ATGTCCGGGC
* * * *
26024787 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
26024850 AGATACTAAATCCGGAC
64 AGATACTAAATCCGG-T
* *
26024867 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCTGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
26024929 AGTTACTAAATCCGGGT
64 AGATACTAAATCC-GGT
* * **
26024946 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
26025011 -TAGCTATATCCGGT
66 ATA-CTAAATCCGGT
* *
26025025 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
26025038 TACGTGATTT
Statistics
Matches: 145, Mismatches: 17, Indels: 19
0.80 0.09 0.10
Matches are distributed among these distances:
78 1 0.01
79 82 0.57
80 54 0.37
81 8 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAAATCCGGT
Found at i:26032936 original size:119 final size:120
Alignment explanation
Indices: 26032720--26032944 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
26032710 TTGAATGATG
*
26032720 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
26032785 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
26032840 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
26032902 TTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGATACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
26032945 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 2 0.02
119 70 0.76
120 20 0.22
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26032951 original size:40 final size:40
Alignment explanation
Indices: 26032720--26032944 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
26032710 TTGAATGATG
* * * *
26032720 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* *
26032760 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
26032800 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26032840 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26032879 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26032920 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26032945 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
39 35 0.21
40 122 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26032966 original size:79 final size:79
Alignment explanation
Indices: 26032727--26032977 Score: 271
Period size: 79 Copynumber: 3.2 Consensus size: 79
26032717 ATGTCCGGGC
* * * *
26032727 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCG
*
26032790 AGATACTAAATCCGGAC
64 AGATACTAAATCCGG-T
*
26032807 TAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCG
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGCATTTGTGCG
*
26032869 AGTTACTAAATCCGGGT
64 AGATACTAAATCC-GGT
* * **
26032886 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
26032951 -TAGCTATATCCGGT
66 ATA-CTAAATCCGGT
* *
26032965 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
26032978 TACGTGATTT
Statistics
Matches: 147, Mismatches: 15, Indels: 19
0.81 0.08 0.10
Matches are distributed among these distances:
78 1 0.01
79 83 0.56
80 55 0.37
81 8 0.05
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
ATACTAAATCCGGT
Found at i:26052954 original size:40 final size:40
Alignment explanation
Indices: 26052898--26053036 Score: 172
Period size: 40 Copynumber: 3.4 Consensus size: 40
26052888 ATTCGATTAC
*
26052898 GTATGGCACTTCGTGTGCAATTCGAGATAGCTTCGGCTAT
1 GTATGGCACTTAGTGTGCAATTCGAGATAGCTTCGGCTAT
* *
26052938 GTATGGCACTTAGTGTGCGATTCGAGATAGCTTCAGCTAT
1 GTATGGCACTTAGTGTGCAATTCGAGATAGCTTCGGCTAT
* * * * *
26052978 GTATGACACTTACTATGCAAGATT-AAAATAGCTTCGGCTAT
1 GTATGGCACTTAGTGTGC-A-ATTCGAGATAGCTTCGGCTAT
26053019 GTATTGGCACTTAGTGTG
1 GTA-TGGCACTTAGTGTG
26053037 TGAGAATTCG
Statistics
Matches: 83, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
40 52 0.63
41 17 0.20
42 14 0.17
ACGTcount: A:0.24, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
GTATGGCACTTAGTGTGCAATTCGAGATAGCTTCGGCTAT
Found at i:26053195 original size:8 final size:8
Alignment explanation
Indices: 26053184--26053212 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26053174 CTTTGAATAT
26053184 AAGTTATG
1 AAGTTATG
26053192 AAGTTATG
1 AAGTTATG
26053200 AAGTTATG
1 AAGTTATG
26053208 AAGTT
1 AAGTT
26053213 TGGATATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.24, T:0.38
Consensus pattern (8 bp):
AAGTTATG
Found at i:26054140 original size:25 final size:25
Alignment explanation
Indices: 26054112--26054181 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
26054102 CTCTTTTAAT
* *
26054112 AACTGAGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
26054137 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
26054162 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26054182 AGCACTTCTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:26054405 original size:27 final size:28
Alignment explanation
Indices: 26054343--26054406 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 28
26054333 CTGTCACTTG
*
26054343 CCCACAAGGGCAAAACAATCATTTAACA
1 CCCACAAGGGCAAAACAATAATTTAACA
* * * *
26054371 CCC-TAAGGGCAAAATAGTAATTTTAC-
1 CCCACAAGGGCAAAACAATAATTTAACA
26054397 CCCACAAGGG
1 CCCACAAGGG
26054407 TATCTCGGTA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.79
28 3 0.10
ACGTcount: A:0.41, C:0.27, G:0.16, T:0.17
Consensus pattern (28 bp):
CCCACAAGGGCAAAACAATAATTTAACA
Found at i:26054417 original size:27 final size:27
Alignment explanation
Indices: 26054386--26054554 Score: 203
Period size: 27 Copynumber: 6.3 Consensus size: 27
26054376 AGGGCAAAAT
* * *
26054386 AGTAATTTTACCCCACAAGGGTATCTC
1 AGTAATTCTACCCTACAAGGGTATTTC
* * * *
26054413 GGTAATTTTACCCTACAGGGGTATTTT
1 AGTAATTCTACCCTACAAGGGTATTTC
*
26054440 AGTAATTCTACCCTATAAGGGTATTTC
1 AGTAATTCTACCCTACAAGGGTATTTC
*
26054467 AGTAATTCTACCTTACAAGGGTATTTC
1 AGTAATTCTACCCTACAAGGGTATTTC
* *
26054494 AGTAATTCTACCCTATAGGGGTATTTC
1 AGTAATTCTACCCTACAAGGGTATTTC
* * *
26054521 GGTAATTCTACCCTATAGGGGTATTTC
1 AGTAATTCTACCCTACAAGGGTATTTC
*
26054548 AATAATT
1 AGTAATT
26054555 TTGTAAATCG
Statistics
Matches: 124, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 124 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (27 bp):
AGTAATTCTACCCTACAAGGGTATTTC
Found at i:26054443 original size:54 final size:54
Alignment explanation
Indices: 26054386--26054554 Score: 230
Period size: 54 Copynumber: 3.1 Consensus size: 54
26054376 AGGGCAAAAT
* * * * * *
26054386 AGTAATTTTACCCCACAAGGGTATCTCGGTAATTTTACCCTACAGGGGTATTTT
1 AGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* * *
26054440 AGTAATTCTACCCTATAAGGGTATTTCAGTAATTCTACCTTACAAGGGTATTTC
1 AGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
* *
26054494 AGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTC
1 AGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
*
26054548 AATAATT
1 AGTAATT
26054555 TTGTAAATCG
Statistics
Matches: 100, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 100 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (54 bp):
AGTAATTCTACCCTATAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTC
Found at i:26054514 original size:81 final size:81
Alignment explanation
Indices: 26054386--26054554 Score: 239
Period size: 81 Copynumber: 2.1 Consensus size: 81
26054376 AGGGCAAAAT
* * * *
26054386 AGTAATTTTACCCCACAAGGGTATCTCGGTAATTTTACCCTACAGGGGTATTTTAGTAATTCTAC
1 AGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
26054451 CCTATAAGGGTATTTC
66 CCTATAAGGGTATTTC
** * * *
26054467 AGTAATTCTACCTTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
1 AGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
*
26054532 CCTATAGGGGTATTTC
66 CCTATAAGGGTATTTC
*
26054548 AATAATT
1 AGTAATT
26054555 TTGTAAATCG
Statistics
Matches: 77, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (81 bp):
AGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTAC
CCTATAAGGGTATTTC
Found at i:26054652 original size:27 final size:27
Alignment explanation
Indices: 26054586--26054961 Score: 378
Period size: 27 Copynumber: 13.9 Consensus size: 27
26054576 GTAATTCTGT
* *
26054586 AAATCAGGGGTACTTTGGTAATTTTTAC
1 AAATCAAGGGTATTTTGGTAA-TTTTAC
* **
26054614 AAGTCTAA-GGTATTTCAGTAATTTTAC
1 AAATC-AAGGGTATTTTGGTAATTTTAC
* *
26054641 AAATTAAGGGTATTTTAGTAATTTTAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
** * *
26054668 AAATTGAGGGTATTTCGATAATTTTAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
* **
26054695 AAATCAGGGGTATTTTGGTAATTTTGT
1 AAATCAAGGGTATTTTGGTAATTTTAC
*
26054722 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
* * * *
26054749 AAGTCGAGGGTATTTTAGTAATTTCAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
* *
26054776 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
* * **
26054803 AAGTCGAGGGTATTTCAGTAATTTTAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
* *
26054830 AAATCAGGGGTATTTTGGTAATTTCAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
* *
26054857 AAA-CTAGGGGTATTTTGGCAATTTTAC
1 AAATC-AAGGGTATTTTGGTAATTTTAC
* *
26054884 AAACCAGGGGTATTTTGGTAATTTTAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
* * *
26054911 AAACCACGAGTATTTTGGTAATTTTAC
1 AAATCAAGGGTATTTTGGTAATTTTAC
** *
26054938 AAATTGAGGGTATTTTAGTAATTT
1 AAATCAAGGGTATTTTGGTAATTT
26054962 GGTAAACTAA
Statistics
Matches: 287, Mismatches: 57, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
26 3 0.01
27 268 0.93
28 15 0.05
29 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
AAATCAAGGGTATTTTGGTAATTTTAC
Found at i:26056885 original size:31 final size:29
Alignment explanation
Indices: 26056812--26056894 Score: 98
Period size: 29 Copynumber: 2.8 Consensus size: 29
26056802 TTCAGTCTCG
*
26056812 ACATATACTGGGCCGAAGCCTTTCATTTA
1 ACATATACTGGGCCGAAGCCTTTCATTAA
*
26056841 AC-TGTTACTGGGCCGAAGCCTTTCCA-TAA
1 ACAT-ATACTGGGCCGAAGCCTTT-CATTAA
26056870 ATCATATCACTGGGCCGAAGCCTTT
1 A-CATAT-ACTGGGCCGAAGCCTTT
26056895 ACTGTAAACA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 1 0.02
29 23 0.50
30 4 0.09
31 18 0.39
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (29 bp):
ACATATACTGGGCCGAAGCCTTTCATTAA
Found at i:26057185 original size:25 final size:25
Alignment explanation
Indices: 26057115--26057236 Score: 172
Period size: 25 Copynumber: 4.8 Consensus size: 25
26057105 CTCTTTTAAT
* *
26057115 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
26057140 AACTGGGGTAAAAAGCCCTTTTCAGTA
1 AACTGGGG--CAAAGCCCTTTTCGGTA
* *
26057167 AACTGGGGTAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
26057192 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
26057217 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26057237 AACACTTCCT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
25 65 0.76
27 21 0.24
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:26057210 original size:50 final size:51
Alignment explanation
Indices: 26057115--26057236 Score: 192
Period size: 50 Copynumber: 2.4 Consensus size: 51
26057105 CTCTTTTAAT
26057115 AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGTAAAAAGCCCTTTTCAGTA
1 AACTGGGGCAAAGCCCTTTTTGATAAACTGGGG-AAAAAGCCCTTTTCAGTA
* * * *
26057167 AACTGGGGTAAAGCCCTTTTTGGTAAACTGGGG-CAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGAAAAAGCCCTTTTCAGTA
26057217 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26057237 AACACTTCCT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
50 34 0.52
52 31 0.48
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGAAAAAGCCCTTTTCAGTA
Found at i:26057581 original size:27 final size:27
Alignment explanation
Indices: 26057442--26057582 Score: 176
Period size: 27 Copynumber: 5.2 Consensus size: 27
26057432 GGGCAAAATG
* * * *
26057442 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
26057469 GTAATTCTACCCTACAGGGGTGTTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
26057496 GTAATTCTACCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
26057523 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
26057550 GTAATTCTACCCTAC-AGAGGTATTTCA
1 GTAATTCTACCCTACAAG-GGTATTTCA
*
26057577 ATAATT
1 GTAATT
26057583 TTGTAAATCG
Statistics
Matches: 100, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 2 0.02
27 98 0.98
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:26057598 original size:27 final size:27
Alignment explanation
Indices: 26057568--26058013 Score: 241
Period size: 27 Copynumber: 16.6 Consensus size: 27
26057558 ACCCTACAGA
* *
26057568 GGTATTTCAATAATTTTGTAAATCGAG
1 GGTATTTCAGTAATTTTATAAATCGAG
** * * *
26057595 GGTAAAAT-GGTAATTCTATAAATCGGG
1 GGT-ATTTCAGTAATTTTATAAATCGAG
* * *
26057622 GGTACTTT-GGTAATTTTACAAGTCGAG
1 GGTA-TTTCAGTAATTTTATAAATCGAG
26057649 GGTATTTCAGTAATTTTATAAATCGAG
1 GGTATTTCAGTAATTTTATAAATCGAG
* *
26057676 GGTATTTCAGTAATTTTACAAA-CTAAG
1 GGTATTTCAGTAATTTTATAAATC-GAG
* *
26057703 GGTATTTC-GATAATTTCACAAATC-AGG
1 GGTATTTCAG-TAATTTTATAAATCGA-G
** *
26057730 GGTATTTTGGTAA-TTTATAAA-CTAG
1 GGTATTTCAGTAATTTTATAAATCGAG
** * * *
26057755 GGATATTTTGGTAATTTTGTAAACCAAG
1 GG-TATTTCAGTAATTTTATAAATCGAG
* * *
26057783 GGTATTTCGGTAATTTTACAAGTCGAG
1 GGTATTTCAGTAATTTTATAAATCGAG
* * * *
26057810 GGTATTTTAGTAACTTCACAAATC-AGG
1 GGTATTTCAGTAATTTTATAAATCGA-G
* * *
26057837 GGTATTT-GGTAATTTTACAAGTCGAG
1 GGTATTTCAGTAATTTTATAAATCGAG
* *
26057863 GGTATTTCAGTAATTTCACAAATC-AGG
1 GGTATTTCAGTAATTTTATAAATCGA-G
** * * * *
26057890 GGTATTTTGGTAATTTCACAAACCAAG
1 GGTATTTCAGTAATTTTATAAATCGAG
** *
26057917 GGTATTTTGGTAATTTTATAAA-CTAGG
1 GGTATTTCAGTAATTTTATAAATCGA-G
** * *
26057944 GGTATTTTGGTAATTTTACAAA-CTAGG
1 GGTATTTCAGTAATTTTATAAATCGA-G
* * **
26057971 GGTATTTTAGTAATTTTACAAATTAAG
1 GGTATTTCAGTAATTTTATAAATCGAG
* *
26057998 GGCATTTTAGTAATTT
1 GGTATTTCAGTAATTT
26058014 GGTAAACTAA
Statistics
Matches: 347, Mismatches: 53, Indels: 38
0.79 0.12 0.09
Matches are distributed among these distances:
25 4 0.01
26 49 0.14
27 283 0.82
28 11 0.03
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTATTTCAGTAATTTTATAAATCGAG
Found at i:26057608 original size:81 final size:81
Alignment explanation
Indices: 26057430--26057612 Score: 190
Period size: 81 Copynumber: 2.3 Consensus size: 81
26057420 TTAACACCCA
* * * * *
26057430 AAGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGGGGTGTTTT
1 AAGGGTAAAATGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTC
* **
26057495 AGTAATTCTACCCTAC
66 AATAATTCTACAATAC
*** * * *
26057511 AAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGAGGTATTTC
1 AAGGGTAAAATGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTC
*
26057576 AATAATTTTGTA-AAT-C
66 AATAA--TTCTACAATAC
*
26057592 GAGGGTAAAATGGTAATTCTA
1 AAGGGTAAAATGGTAATTCTA
26057613 TAAATCGGGG
Statistics
Matches: 80, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
81 75 0.94
82 1 0.01
83 4 0.05
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (81 bp):
AAGGGTAAAATGGTAATTCTACCCCACAAGGGTATCTCGGTAATTCTACCCTACAGAGGTATTTC
AATAATTCTACAATAC
Found at i:26057689 original size:81 final size:80
Alignment explanation
Indices: 26057455--26058013 Score: 400
Period size: 81 Copynumber: 6.9 Consensus size: 80
26057445 ATTTTACCCC
* * ** * * **
26057455 ACAAGGGTATCTCGGTAATTCTAC-CCTACAGGGGTGTTTTAGTAATTCTAC-CCTACAAGGGTA
1 ACAAGGGTATTTCGGTAATTTTACAAAT-CAGGGGTATTTTAGTAATTTTACAAAT-CAAGGGTA
* * ***
26057518 TTTTAGTAATTCTACCCT
64 TTTTGGTAATTTTA-TAA
* ** * * * ** * *
26057536 ACAAGGGTATTTCGGTAATTCTAC-CCTACAGAGGTATTTCAATAATTTTGTAAATCGAGGGTAA
1 ACAAGGGTATTTCGGTAATTTTACAAAT-CAGGGGTATTTTAGTAATTTTACAAATCAAGGGTAT
** *
26057600 AATGGTAATTCTATAA
65 TTTGGTAATTTTATAA
** * * * *
26057616 ATCGGGGGTACTTT-GGTAATTTTACAAGTC-GAGGGTATTTCAGTAATTTTATAAATCGAGGGT
1 A-CAAGGGTA-TTTCGGTAATTTTACAAATCAG-GGGTATTTTAGTAATTTTACAAATCAAGGGT
** *
26057679 ATTTCAGTAATTTTACAA
63 ATTTTGGTAATTTTATAA
* * * * *
26057697 ACTAAGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGGTAA-TTTATAAA-CTAGGGATA
1 AC-AAGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATCAAGGG-TA
*
26057760 TTTTGGTAATTTTGTAA
64 TTTTGGTAATTTTATAA
* * * *
26057777 ACCAAGGGTATTTCGGTAATTTTACAAGTC-GAGGGTATTTTAGTAACTTCACAAATCAGGGGTA
1 A-CAAGGGTATTTCGGTAATTTTACAAATCAG-GGGTATTTTAGTAATTTTACAAATCAAGGGTA
*
26057841 -TTTGGTAATTTTACAA
64 TTTTGGTAATTTTATAA
* * * * * * *
26057857 GTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACCAAGGGTAT
1 -ACAAGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATCAAGGGTAT
26057922 TTTGGTAATTTTATAA
65 TTTGGTAATTTTATAA
* * * *
26057938 ACTAGGGGTATTTTGGTAATTTTACAAA-CTAGGGGTATTTTAGTAATTTTACAAATTAAGGGCA
1 AC-AAGGGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTAGTAATTTTACAAATCAAGGGTA
*
26058002 TTTTAGTAATTT
64 TTTTGGTAATTT
26058014 GGTAAACTAA
Statistics
Matches: 383, Mismatches: 77, Indels: 36
0.77 0.16 0.07
Matches are distributed among these distances:
79 6 0.02
80 135 0.35
81 232 0.61
82 10 0.03
ACGTcount: A:0.31, C:0.12, G:0.20, T:0.37
Consensus pattern (80 bp):
ACAAGGGTATTTCGGTAATTTTACAAATCAGGGGTATTTTAGTAATTTTACAAATCAAGGGTATT
TTGGTAATTTTATAA
Found at i:26058005 original size:54 final size:54
Alignment explanation
Indices: 26057604--26058013 Score: 368
Period size: 54 Copynumber: 7.6 Consensus size: 54
26057594 GGGTAAAATG
* * * * * * *
26057604 GTAATTCTATAAATCGGGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCA
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTA
* ** * *
26057658 GTAATTTTATAAATC-GAGGGTATTTCAGTAATTTTACAAACTAAGGGTA-TTTC
1 GTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
* * * *
26057711 GATAATTTCACAAATCAGGGGTATTTTGGTAA-TTTATAAACTAGGGATATTTTG
1 G-TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
** * * * * *
26057765 GTAATTTTGTAAACCAAGGGTATTTCGGTAATTTTAC-AAGTCGAGGGTATTTTA
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTA
* * * * *
26057819 GTAACTTCACAAATCAGGGGTA-TTTGGTAATTTTAC-AAGTCGAGGGTATTTCA
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTA
* * * * *
26057872 GTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAACCAAGGGTATTTTG
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
*
26057926 GTAATTTTATAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
1 GTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
* * * *
26057980 GTAATTTTACAAATTAAGGGCATTTTAGTAATTT
1 GTAATTTTACAAATCAGGGGTATTTTGGTAATTT
26058014 GGTAAACTAA
Statistics
Matches: 290, Mismatches: 55, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
53 97 0.33
54 187 0.64
55 6 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (54 bp):
GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTA
Found at i:26059975 original size:31 final size:30
Alignment explanation
Indices: 26059897--26059979 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 30
26059887 TTCAGTCTCG
* *
26059897 ACATATACTAGGCCGAAG-CTTTTCATTTA
1 ACATATACTGGGCCGAAGCCTTTTCATTAA
*
26059926 AC-TATTACTGTGCCGAAGCCTTTTCA-TAA
1 ACATA-TACTGGGCCGAAGCCTTTTCATTAA
26059955 ATCATATCACTGGGCCGAAGCCTTT
1 A-CATAT-ACTGGGCCGAAGCCTTT
26059980 ACTGTAAACG
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
28 2 0.04
29 16 0.36
30 9 0.20
31 18 0.40
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.33
Consensus pattern (30 bp):
ACATATACTGGGCCGAAGCCTTTTCATTAA
Found at i:26060228 original size:25 final size:25
Alignment explanation
Indices: 26060200--26060294 Score: 172
Period size: 25 Copynumber: 3.8 Consensus size: 25
26060190 CTCTTTTAAT
*
26060200 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTTGGTA
26060225 AACTGGGGCAAAGCCCTTTTTGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
*
26060250 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTTGGTA
26060275 AACTGGGGCAAAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
26060295 AACACTTCCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 68 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTTGGTA
Found at i:26060230 original size:50 final size:49
Alignment explanation
Indices: 26060187--26060296 Score: 159
Period size: 50 Copynumber: 2.2 Consensus size: 49
26060177 CTGGAGGCCT
*
26060187 AGCCTCTTTTAAT-AACTGGGGCAAAGCCCTTTTTGATAAACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
** *
26060236 AGCCCTTTTTGGTAAACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
26060286 AGCCCTTTTAA
1 AGCCCTTTTAA
26060297 CACTTCCTCC
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
48 1 0.02
49 13 0.25
50 39 0.74
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (49 bp):
AGCCCTTTTAATAAACTGGGGCAAAGCCCTTTTCGATAAACTGGGGCAA
Found at i:26060529 original size:27 final size:27
Alignment explanation
Indices: 26060500--26060667 Score: 237
Period size: 27 Copynumber: 6.2 Consensus size: 27
26060490 GGGCAAAATG
* * *
26060500 GTAATTTTACCCTACAAGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
26060527 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
26060554 GTAATTCTTCCCTACAAGGGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCA
26060581 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
26060608 GTAATTCTACCCAATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
26060635 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
*
26060662 ATAATT
1 GTAATT
26060668 TTGTAAATCG
Statistics
Matches: 123, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 123 1.00
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:26060681 original size:27 final size:27
Alignment explanation
Indices: 26060651--26060804 Score: 91
Period size: 27 Copynumber: 5.7 Consensus size: 27
26060641 CTACCCTACA
26060651 AGGGTATTTCAATAATTTTGTAAATCG
1 AGGGTATTTCAATAATTTTGTAAATCG
** ** *
26060678 AGGGTAAAAT-GGTAATTCTGTAAATCG
1 AGGGT-ATTTCAATAATTTTGTAAATCG
* **
26060705 GGGGTACTTT-GGTAATTTT-TACAAGTCG
1 AGGGTA-TTTCAATAATTTTGTA-AA-TCG
* * **
26060733 ACGGTATTTCAGTAATTTTACAAATCG
1 AGGGTATTTCAATAATTTTGTAAATCG
* * *
26060760 AGAGTATTTCAATAATTTTGCAAA-CTA
1 AGGGTATTTCAATAATTTTGTAAATC-G
*
26060787 AGGGTATTTCGATAATTT
1 AGGGTATTTCAATAATTT
26060805 ACAAATCAGG
Statistics
Matches: 100, Mismatches: 20, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
26 4 0.04
27 76 0.76
28 19 0.19
29 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGTATTTCAATAATTTTGTAAATCG
Found at i:26060820 original size:26 final size:26
Alignment explanation
Indices: 26060706--26061095 Score: 308
Period size: 27 Copynumber: 14.7 Consensus size: 26
26060696 TGTAAATCGG
* *
26060706 GGGTACTTTGGTAATTTTTACAAGTCGA
1 GGGTATTTTGGTAA-TTTTACAAATC-A
* **
26060734 CGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAATC-A
* *** * *
26060761 GAGTATTTCAATAATTTTGCAAACTAA
1 GGGTATTTTGGTAATTTTACAAA-TCA
* *
26060788 GGGTATTTCGATAA-TTTACAAATCA
1 GGGTATTTTGGTAATTTTACAAATCA
26060813 GGGATATTTTGGTAATTTTACAAA-CTA
1 GGG-TATTTTGGTAATTTTACAAATC-A
** *
26060840 GGGATATTTTGGTAATTTTGTAAACCA
1 GGG-TATTTTGGTAATTTTACAAATCA
* *
26060867 AGGTATTTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATC-A
** * *
26060894 GGGTATTTCAGTAACTTCACAAATCA
1 GGGTATTTTGGTAATTTTACAAATCA
*
26060920 GGGTA-TTTGGTAATTTTACAAGTCGA
1 GGGTATTTTGGTAATTTTACAAATC-A
** *
26060946 GGGTATTTCAGTAATTTCACAAATCA
1 GGGTATTTTGGTAATTTTACAAATCA
*
26060972 GGGGTATTTTGGTAATTTCACAAA-CA
1 -GGGTATTTTGGTAATTTTACAAATCA
26060998 TGGGTATTTTGGTAATTTTACAAA-CTA
1 -GGGTATTTTGGTAATTTTACAAATC-A
26061025 GGGATATTTTGGTAATTTTACAAA-CTA
1 GGG-TATTTTGGTAATTTTACAAATC-A
* *
26061052 GGGGTA-TTTAGTAATTTTACAAATTGA
1 -GGGTATTTTGGTAATTTTACAAA-TCA
* *
26061079 GGGCATTTTAGTAATTT
1 GGGTATTTTGGTAATTT
26061096 GGTAAACTAA
Statistics
Matches: 302, Mismatches: 45, Indels: 31
0.80 0.12 0.08
Matches are distributed among these distances:
25 19 0.06
26 96 0.32
27 172 0.57
28 15 0.05
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAATCA
Found at i:26060954 original size:185 final size:186
Alignment explanation
Indices: 26060735--26061092 Score: 483
Period size: 185 Copynumber: 1.9 Consensus size: 186
26060725 ACAAGTCGAC
**
26060735 GGTATTTCAGTAATTTTACAAATCGAGAGTATTTCAATAATTTTGCAAA-CTAAGGGTATTTCGA
1 GGTATTTCAGTAATTTTACAAATCGAGAGTATTTCAATAATTTCACAAATC-AAGGGTATTTCGA
**
26060799 TAATTT-ACAAATCA-GGGATATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTGTA
65 TAATTTCACAAA-CATGGG-TATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTACA
* * *
26060862 AACCA-AGGTATTTTGGTAATTTTACAAGTCGAGGGTATTTCAGTAACTTCACAAATCAG
128 AACCAGAGGTA-TTTAGTAATTTTACAAATCGAGGGCATTTCAGTAACTTCACAAATCAG
* * * * * * *
26060921 GGTATTT-GGTAATTTTACAAGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGT
1 GGTATTTCAGTAATTTTACAAATCGAGAGTATTTCAATAATTTCACAAATCAAGGGTATTTCGAT
26060985 AATTTCACAAACATGGGTATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTACAAAC
66 AATTTCACAAACATGGGTATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTACAAAC
* * * *
26061050 TAGGGGTATTTAGTAATTTTACAAATTGAGGGCATTTTAGTAA
131 CAGAGGTATTTAGTAATTTTACAAATCGAGGGCATTTCAGTAA
26061093 TTTGGTAAAC
Statistics
Matches: 150, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
185 130 0.87
186 20 0.13
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (186 bp):
GGTATTTCAGTAATTTTACAAATCGAGAGTATTTCAATAATTTCACAAATCAAGGGTATTTCGAT
AATTTCACAAACATGGGTATTTTGGTAATTTTACAAACTAGGGATATTTTGGTAATTTTACAAAC
CAGAGGTATTTAGTAATTTTACAAATCGAGGGCATTTCAGTAACTTCACAAATCAG
Found at i:26061087 original size:53 final size:52
Alignment explanation
Indices: 26060735--26061095 Score: 320
Period size: 53 Copynumber: 6.8 Consensus size: 52
26060725 ACAAGTCGAC
* *** * *
26060735 GGTATTTCAGTAATTTTACAAATCGAGAGTATTTCAATAATTTTGCAAACTAAG
1 GGTATTT-AGTAATTTTACAAATC-AGGGTATTTTGGTAATTTTACAAACTAGG
*
26060789 GGTATTTCGATAA-TTTACAAATCAGGGATATTTTGGTAATTTTACAAACTAGG
1 GGTATTTAG-TAATTTTACAAATCAGGG-TATTTTGGTAATTTTACAAACTAGG
* * ** * * * *
26060842 GATATTTTGGTAATTTTGTAAACCAAGGTATTTTGGTAATTTTAC-AAGTCGAG
1 GGTA-TTTAGTAATTTTACAAATCAGGGTATTTTGGTAATTTTACAAACTAG-G
* * * *
26060895 GGTATTTCAGTAACTTCACAAATCAGGGTA-TTTGGTAATTTTAC-AAGTCGAG
1 GGTATTT-AGTAATTTTACAAATCAGGGTATTTTGGTAATTTTACAAACTAG-G
* * *
26060947 GGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTCACAAAC-ATG
1 GGTATTT-AGTAATTTTACAAATCA-GGGTATTTTGGTAATTTTACAAACTAGG
*
26061000 GGTATTTTGGTAATTTTACAAA-CTAGGGATATTTTGGTAATTTTACAAACTAGG
1 GGTA-TTTAGTAATTTTACAAATC-AGGG-TATTTTGGTAATTTTACAAACTAGG
* * *
26061054 GGTATTTAGTAATTTTACAAATTGAGGGCATTTTAGTAATTT
1 GGTATTTAGTAATTTTACAAA-TCAGGGTATTTTGGTAATTT
26061096 GGTAAACTAA
Statistics
Matches: 256, Mismatches: 36, Indels: 31
0.79 0.11 0.10
Matches are distributed among these distances:
52 60 0.23
53 144 0.56
54 50 0.20
55 2 0.01
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (52 bp):
GGTATTTAGTAATTTTACAAATCAGGGTATTTTGGTAATTTTACAAACTAGG
Found at i:26062914 original size:12 final size:12
Alignment explanation
Indices: 26062897--26062921 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26062887 GCTTGTCACG
26062897 GCCTAGCACACA
1 GCCTAGCACACA
26062909 GCCTAGCACACA
1 GCCTAGCACACA
26062921 G
1 G
26062922 GCGTGTGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.40, G:0.20, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACA
Done.