Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 81 of 259
Found at i:26076549 original size:39 final size:39
Alignment explanation
Indices: 26076492--26076612 Score: 197
Period size: 39 Copynumber: 3.1 Consensus size: 39
26076482 AAGCAAGACA
* * *
26076492 CTGGAAAGGTATCTGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
26076531 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
* *
26076570 CTGGAAATGTATCCGAGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
26076609 CTGG
1 CTGG
26076613 TAATATAATT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.23
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTG
Found at i:26084797 original size:79 final size:78
Alignment explanation
Indices: 26084697--26084920 Score: 283
Period size: 79 Copynumber: 2.8 Consensus size: 78
26084687 GCTCCTCATT
*
26084697 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
26084762 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
26084777 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
26084840 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
26084855 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
26084919 GA
63 GA
26084921 CAACATTCAA
Statistics
Matches: 127, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
78 38 0.30
79 54 0.43
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:26084814 original size:39 final size:40
Alignment explanation
Indices: 26084697--26084920 Score: 275
Period size: 39 Copynumber: 5.7 Consensus size: 40
26084687 GCTCCTCATT
*
26084697 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
26084737 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26084777 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26084816 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * *
26084855 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGT-ATC-TCGCA
26084896 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26084921 CAACATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 75 0.45
40 75 0.45
41 14 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26084920 original size:40 final size:39
Alignment explanation
Indices: 26084697--26084920 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 39
26084687 GCTCCTCATT
*
26084697 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
* * *
26084737 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
26084777 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
26084816 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
* * *
26084855 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-A-TTCGCA
26084896 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26084921 CAACATTCAA
Statistics
Matches: 165, Mismatches: 11, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
38 3 0.02
39 69 0.42
40 79 0.48
41 13 0.08
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATTCGCA
Found at i:26092424 original size:40 final size:40
Alignment explanation
Indices: 26092348--26092603 Score: 320
Period size: 40 Copynumber: 6.4 Consensus size: 40
26092338 CTGTCCGAGC
* * * * * *
26092348 TAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGAT
1 TAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGT
* * * *
26092388 TAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGT
1 TAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
26092428 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
26092468 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
26092508 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
* * * * *
26092548 TATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGC
1 TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
*
26092587 TATGTCCCGAAGGCATT
1 TAAGTCCCGAAGGCATT
26092604 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 17, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.18
40 153 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
Found at i:26092623 original size:79 final size:80
Alignment explanation
Indices: 26092380--26092638 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
26092370 AAGTGAATAT
* * * * * *
26092380 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
26092444 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
26092460 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
26092525 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
26092540 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
26092604 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
26092619 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
26092639 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:26105391 original size:294 final size:294
Alignment explanation
Indices: 26104263--26119969 Score: 29585
Period size: 294 Copynumber: 53.6 Consensus size: 294
26104253 ACTAAAATAT
*
26104263 AGATAAAAAAAAATAGAAAAAAA-TTAATGAGATAT-AAATTGGAGGGTGCAACACGAGGACTT-
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26104325 CCAGGAGGTCA-CCATCCTAGTACTA--CTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26104387 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26104452 CTA-CCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26104516 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26104550 AGATATAAAAAAATAGAAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAG-AAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
26104615 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26104680 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26104745 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26104810 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26104845 AGATATAAAAAAATAGAAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAG-AAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
26104910 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26104975 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26105040 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26105105 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26105140 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26105205 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26105270 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26105335 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26105400 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26105434 AGATATAAAAAAATAGAAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAG-AAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
26105499 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26105564 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26105629 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26105694 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26105729 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26105794 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26105859 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26105924 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26105989 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26106023 AGATATAAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
1 AGATAT-AAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
26106088 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26106153 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26106218 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26106283 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26106318 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGA-GGGTGCAACACGAGGACTT
26106383 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26106448 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26106513 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26106578 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26106613 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26106678 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26106743 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26106808 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26106873 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26106907 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26106972 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26107037 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26107102 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26107167 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26107201 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26107266 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26107331 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26107396 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26107461 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26107495 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26107560 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26107625 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26107690 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26107755 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26107789 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26107854 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26107919 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26107984 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26108049 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26108083 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26108148 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26108213 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26108278 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26108343 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26108377 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26108442 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26108507 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26108572 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26108637 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26108671 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26108736 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26108801 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26108866 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26108931 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26108965 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26109030 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26109095 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26109160 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26109225 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26109259 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGA-GGGTGCAACACGAGGACTT
26109324 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26109389 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26109454 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26109519 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26109554 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26109619 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26109684 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26109749 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26109814 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26109848 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26109913 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26109978 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26110043 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26110108 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26110142 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26110207 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26110272 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26110337 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26110402 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26110436 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGA-GGGTGCAACACGAGGACTT
26110501 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26110566 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26110631 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26110696 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26110731 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT-
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26110795 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26110860 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26110925 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26110990 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26111024 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26111089 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26111154 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26111219 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26111284 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26111318 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26111383 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26111448 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26111513 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26111578 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26111612 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26111677 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
*
26111742 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26111807 CTACCCCTGATCGCGCTTG-GCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26111871 TTTATTCCGTAAATAACTAATTAGTTATACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26111905 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26111970 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26112035 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26112100 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26112165 TTTATTCCGTAAATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26112198 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT-
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26112262 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26112327 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26112392 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26112457 TTTATTCCGTAAATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26112490 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26112555 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
*
26112620 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26112685 CTACCCCTGATCGCGCTTG-GCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26112749 TTTATTCCGTAAATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26112782 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26112847 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
*
26112912 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26112977 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26113042 TTTATTCCGTAAATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26113075 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
26113140 -CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26113204 GATCCGGTGCATTAGTGCTGGTATGATCGCACCC-TCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26113268 GCTACCCCTGATCGCGCTTG-GCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26113332 ATTTATTCCGTAAATAACTAATTAGTTA-ACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26113366 AGATATAAAAAAATAGAAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACT
1 AGATATAAAAAAATAG-AAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACT
26113431 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
64 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
26113496 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCC-TCAATTCTTGCGCATTCTATTTATATAAA
129 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAA
26113560 GGCTACCCCTGATCGCGCTTG-GCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
194 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
26113624 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
259 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
26113660 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26113725 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
*
26113790 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26113855 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26113920 TTTATTCCGTAAATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26113953 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26114018 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
*
26114083 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26114148 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26114213 TTTATTCCGTAAATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26114246 AGATATAAAAAAATAGAAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACT
1 AGATATAAAAAAATAG-AAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACT
*
26114311 TCCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
64 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
26114376 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCC-TCAATTCTTGCGCATTCTATTTATATAAA
129 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAA
26114440 GGCTACCCCTGATCGCGCTTG-GCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
194 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
26114504 GATTTATTCCGTAAATAACTAATTAGTTA-ACGATG
259 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
26114539 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
26114604 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26114669 GATCCGGTGCATTAGTGCTGGTATGATCGCACCC-TCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26114733 GCTACCCCT-ATCGCGCTTG-GCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26114796 ATTTATTCCGTAAATAACTAATTAGTTA-ACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26114830 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26114895 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
26114960 ATCCGGTGCATTAGTGCTGGTATGATCGCACCC-TCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
*
26115024 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTATATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
*
26115089 TTTATTCCGTAGATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
*
26115122 AGATATAAAAAAATAGAAAAAAATTTAATGCGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
*
26115187 CCTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* *
26115252 GATCCGGTGCATTAGTG-TGGTATGATCACACCCGTCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26115316 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26115381 ATTTATTCCGTAAATAACTAATTAGTTA-ACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26115415 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
26115480 ---AGGAGGTCACCCCATCCTAGTACTACTCTCGCCCAAG-ACGCTTAACTGCGGAGTTCTGATG
65 CCCAGGAGGTCA-CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
*
26115541 GGATCCGGTGCATTAGTGCTGGTATGATCGCA--C--C----C---CG---TC-AATTATATAAA
129 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAA
*
26115591 GGCTACCCCTGATCGCGCTTG-GCCTCGAATTTGAATTTAAGTACGACCAAATAAC-TTTCGAGT
194 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
26115654 GATTTATTCCGTAAATAACTAATTAGTTA-ACGATG
259 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
26115689 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
26115754 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
*
26115819 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGC-CATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26115883 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
*
26115948 ATTTATTCCGTAGATAACTAATTAGTTA-ACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26115982 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
26116047 CCCAGGAGGT-ACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
26116111 GATCCGGTGCATTAGTGCTGGTATGATC-CA-CCATCCAATTCTTGCGCATTCTATTTATATAAA
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCAT-CAATTCTTGCGCATTCTATTTATATAAA
*
26116174 GGCTACCCCTAATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
194 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
* *
26116239 GATTTATTCCGTAAATAACTAATTAGTTAAACGCTG
259 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
26116275 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
*
26116340 CTAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAG-ACGCTTAACTGCGGAGTTCTGAT-GG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
* *
26116403 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCCATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
26116468 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTT-AATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
*
26116532 TTTATTCCGTAGATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
*
26116565 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATT-GAGGGTGCAAGACGAGGACTTC
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
26116629 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
66 CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
* *
26116694 ATCCGGTGCATTAGTG-TGGTATGATCACACCCGTCAATTCTTGCGCATTCTATTTATATAAAGG
131 ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
* *
26116758 CTACCCCTAATCACGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
196 CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
26116823 TTTATTCCGTAAATAACTAATTAGTTA-ACGATG
261 TTTATTCCGTAAATAACTAATTAGTTATACGATG
26116856 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
* *
26116921 CCTAGGAGGTCACCCCATCCTAGTACTACTCTCGCCCAAGAACGCTTAACTGCGGAGTTCTGATG
65 CCCAGGAGGTCA-CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* *
26116986 GGATCCGGTGCATTAGTGCTGGTATGATCGTACCCGTCAATTCTTGCGCATTCTATTTATATAAA
129 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAA
* * *
26117051 GGCTA-CCCTGATTGCGCTTG-GCCTCGAATTTGAATTTAAGTACGACCGAATAACGTTT-GAGT
194 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
*
26117113 GATTTATTCCGTAAATAACTAATTAGTTAAACGATG
259 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
*
26117149 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAATGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
*
26117214 CCTAGGAGGTCACCCATCCTAGTACTACT-TCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* *
26117278 GATCCGGTGCATTAGTGCTGGTCTGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
*
26117343 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATATGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
*
26117408 ATTTATTCCGTAAATAACT-ATTAGTTAAACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26117442 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAATGGGTGCAACACGAGGACT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-A-GGGTGCAACACGAGGACT
*
26117507 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCATG-TTAACTGCGGAGTTCTGATG
64 TCCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
*
26117571 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAA
129 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAA
**
26117636 GGCTACCCCTGATCGTACTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
194 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
*
26117701 GATTTATTCCGTAAATAACTAATTAGTTAAACGATG
259 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
*
26117737 AGATATAAAAAAATAGAAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAAGACGAGGACTT
1 AGATATAAAAAAATAG-AAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTT
*
26117802 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGTGGA-TTCT-ATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
*
26117865 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGT-AATTCTTGCGCATTCTATTTATATAAA-
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
* *
26117928 GCTACCCCTGATCGCGCTTGAGTCTCGAATTTGAATTTAAATACGACCAAATAAC-TTTTGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
* *
26117992 ATTTATTCCGTAAATAACTACTTAGTTAAACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26118027 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGA-GACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
*
26118091 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAA-CATGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
*
26118155 GATCCGGTGCATTAGTGCTGGTA-GATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26118219 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
*
26118284 ATTTATTCCGTAAATAACTAATTAGTTAAACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
* *
26118319 AGATATAAAAAAAAAG-AAAAAATTTAATGAGATATAAAATTGGAATGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
* * *
26118383 -CCAGGAGGTCACCCATCCTAGTACTACTCTAGCCCACGCACGCTTAACTGCGGAGTTCGGAT-G
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
*
26118446 GATCCGG-GCATTAGTGCTGGTAT-ATC-CACCCGTCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
*
26118508 GCTACCCCAGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
26118573 ATTTATTCCGTAAATAACTAATTAGTTA-ACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26118607 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
26118672 -CCAGGAGGTCACCCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
65 CCCAGGAGGTCA-CCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATG
* *
26118736 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCCATTCTTGCGCATTCTATTTATATAAA
129 GGATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAA
*
26118801 GGCTACCCCTGATCGCGC-TG-GCCTCGAATTTGAATTTAAATACGACCAAGTAACGTTTCGAGT
194 GGCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGT
*
26118864 GATTTATTCCATAAATAACTAATTAGTTA-ACGATG
259 GATTTATTCCGTAAATAACTAATTAGTTATACGATG
*
26118899 AGATAT-AAAAAATAGAAAAAAATTTAATGAGATATAAAATTGAAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTG-GAGGGTGCAACACGAGGACTT
* * *
26118963 CCCAGGAGGTCACCCATCCTAGTACTACTCACACCCAAGCACGTTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
*
26119028 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGTCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26119093 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
*
26119158 ATTTATTCCGTAAATAACTAATTAGTTA-ACGAAG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26119192 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
* *
26119257 CCCA-GAGGTCGCCCATGCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* *
26119321 GATTCGGTGCATTAATGCTGGTATGATCGCACCCATCAATTCTTGCGCATT-TATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
26119385 GCTACCCCT-ATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
* *
26119449 ATTTATTCCGTAAGTAACTAATTAGTTAAACGATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
*
26119484 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGAAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTG-GAGGGTGCAACACGAGGACTT
* * *
26119549 CCCAGGAGGTCACCCATCTTAGTACTACTCTCGCCGAAGCACGCTTCACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
* **
26119614 GATCCGGTGCATTAGTGCTGGTATGATCACACCCGGCAATTCTTGCGCATTCTATTTATATAAAG
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAG
*
26119679 GCTACCCCTGATCGCGCTTGAGCCTCAAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
195 GCTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTG
* *
26119744 ATTTATTCCGTAAATAACTAATTAGTTAAACAATG
260 ATTTATTCCGTAAATAACTAATTAGTTATACGATG
26119779 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAAGGGTGCAACACGAGGACTT
1 AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGG-AGGGTGCAACACGAGGACTT
*
26119844 CCCAGGAGGTCACCCATCCTAATACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
65 CCCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGG
**
26119909 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCGGCAATTCTTGCGCATTCTATTTATAT
130 GATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATAT
26119970 CAAGAAAAGG
Statistics
Matches: 15188, Mismatches: 131, Indels: 194
0.98 0.01 0.01
Matches are distributed among these distances:
274 108 0.01
275 33 0.00
276 58 0.00
277 67 0.00
279 1 0.00
280 2 0.00
281 1 0.00
283 1 0.00
285 1 0.00
287 16 0.00
288 43 0.00
289 344 0.02
290 583 0.04
291 1098 0.07
292 1860 0.12
293 2793 0.18
294 5783 0.38
295 2368 0.16
296 28 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (294 bp):
AGATATAAAAAAATAGAAAAAAATTTAATGAGATATAAAATTGGAGGGTGCAACACGAGGACTTC
CCAGGAGGTCACCCATCCTAGTACTACTCTCGCCCAAGCACGCTTAACTGCGGAGTTCTGATGGG
ATCCGGTGCATTAGTGCTGGTATGATCGCACCCATCAATTCTTGCGCATTCTATTTATATAAAGG
CTACCCCTGATCGCGCTTGAGCCTCGAATTTGAATTTAAATACGACCAAATAACGTTTCGAGTGA
TTTATTCCGTAAATAACTAATTAGTTATACGATG
Found at i:26120651 original size:17 final size:17
Alignment explanation
Indices: 26120618--26120653 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
26120608 TATTTGACAG
26120618 AGCTTGCAAAGACGAAA
1 AGCTTGCAAAGACGAAA
26120635 AGCTTAGCAAAGA-GAAA
1 AGCTT-GCAAAGACGAAA
26120652 AG
1 AG
26120654 AAAAGTCGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.50, C:0.14, G:0.25, T:0.11
Consensus pattern (17 bp):
AGCTTGCAAAGACGAAA
Found at i:26125889 original size:40 final size:40
Alignment explanation
Indices: 26125824--26125957 Score: 151
Period size: 40 Copynumber: 3.4 Consensus size: 40
26125814 CAGTTATTTG
* **
26125824 TGGCACTTAGCGTGCGATAGGACATAGCTTCGGCTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* * **
26125864 TGACACTTAGTGTGCGATTCAACATAGCTTCAACTATATA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
* * * * *
26125904 TGGCACTTAGTGTGTGATTTGAGATAGCTTTGGCTATGTA
1 TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
*
26125944 CGGCACTTAGTGTG
1 TGGCACTTAGTGTG
26125958 TGAGATATAG
Statistics
Matches: 77, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGACATAGCTTCGGCTATATA
Found at i:26130793 original size:34 final size:34
Alignment explanation
Indices: 26130747--26130835 Score: 106
Period size: 34 Copynumber: 2.6 Consensus size: 34
26130737 TTGAATAGTC
* * * *
26130747 TGGGCCTAAGCCCATTTTAGTAGTAATATCCGTG
1 TGGGCCTTAGCCCATTTCAGTAATAATATCAGTG
* * *
26130781 TGGGCCTTAGCCCAATACAGTAATAGTATCAGTG
1 TGGGCCTTAGCCCATTTCAGTAATAATATCAGTG
*
26130815 TGGGCCTTAGCCTATTTCAGT
1 TGGGCCTTAGCCCATTTCAGT
26130836 GCATTATCAG
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 45 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (34 bp):
TGGGCCTTAGCCCATTTCAGTAATAATATCAGTG
Found at i:26134386 original size:37 final size:38
Alignment explanation
Indices: 26134314--26134387 Score: 141
Period size: 38 Copynumber: 2.0 Consensus size: 38
26134304 CTTAGCTAGC
26134314 CAATCCATACCCAGTATCAAGTTTGAACTCTCCAAAAA
1 CAATCCATACCCAGTATCAAGTTTGAACTCTCCAAAAA
26134352 CAATCCATACCCAGTATCAAG-TTGAACTCTCCAAAA
1 CAATCCATACCCAGTATCAAGTTTGAACTCTCCAAAA
26134388 GGAAGTTCCA
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
37 15 0.42
38 21 0.58
ACGTcount: A:0.39, C:0.30, G:0.08, T:0.23
Consensus pattern (38 bp):
CAATCCATACCCAGTATCAAGTTTGAACTCTCCAAAAA
Found at i:26136842 original size:34 final size:34
Alignment explanation
Indices: 26136804--26136893 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 34
26136794 TCTGGGCCAA
*
26136804 AGCCCATTTTAGTTGCAATATCAATATGGGCCTT
1 AGCCCATTTTAGTTACAATATCAATATGGGCCTT
* ** * * *
26136838 AGCCCAATACAGTAACAATATCAGTGTGGGCCTT
1 AGCCCATTTTAGTTACAATATCAATATGGGCCTT
26136872 AGCCCATTTTAG-TACAATATCA
1 AGCCCATTTTAGTTACAATATCA
26136894 GAAATGCATA
Statistics
Matches: 45, Mismatches: 11, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
33 9 0.20
34 36 0.80
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.30
Consensus pattern (34 bp):
AGCCCATTTTAGTTACAATATCAATATGGGCCTT
Found at i:26139658 original size:64 final size:65
Alignment explanation
Indices: 26139577--26139759 Score: 187
Period size: 67 Copynumber: 2.8 Consensus size: 65
26139567 AGACATTATG
* * *
26139577 ATGTAGCTAGGTCGCATGGGTGATACT-ATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTCATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
** * * *
26139641 ATGTAGCTAGGTCGCATGCATGGT-TTCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 ATGTAGCTAGGTCGCATGGGTGGTACTCA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGA
26139705 TAA
63 TAA
* * * *
26139708 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 ATGTAGCTAGGTCGCATGGGTGGTACTCATGTGTACACCATGTAG-ACAAGAGAG
26139760 TCGAACTATA
Statistics
Matches: 96, Mismatches: 17, Indels: 13
0.76 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.20
64 23 0.24
66 19 0.20
67 34 0.35
ACGTcount: A:0.30, C:0.16, G:0.31, T:0.24
Consensus pattern (65 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTCATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:26141662 original size:8 final size:8
Alignment explanation
Indices: 26141645--26141682 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
26141635 ATTCAAGCAC
26141645 AGAA-AAG
1 AGAAGAAG
26141652 AGAAGAAG
1 AGAAGAAG
*
26141660 AGAAGATG
1 AGAAGAAG
*
26141668 ATAAGAAG
1 AGAAGAAG
26141676 AGAAGAA
1 AGAAGAA
26141683 AAGTATCTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
7 4 0.15
8 22 0.85
ACGTcount: A:0.63, C:0.00, G:0.32, T:0.05
Consensus pattern (8 bp):
AGAAGAAG
Found at i:26145706 original size:40 final size:40
Alignment explanation
Indices: 26145642--26145735 Score: 116
Period size: 40 Copynumber: 2.4 Consensus size: 40
26145632 TTATTTGTGG
* * *
26145642 CACTTAGTGTGTGATACGACATAGCTTCGGCTATATATGA
1 CACTTAGTGTGCGATACGACATAGCTTCAGCTATATACGA
** * * *
26145682 CACTTAGTGTGCGATTTGAGATAGCTTCAGCTATGTACGG
1 CACTTAGTGTGCGATACGACATAGCTTCAGCTATATACGA
26145722 CACTTAGTGTGCGA
1 CACTTAGTGTGCGA
26145736 GATATCGAGT
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 46 1.00
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (40 bp):
CACTTAGTGTGCGATACGACATAGCTTCAGCTATATACGA
Found at i:26154349 original size:27 final size:27
Alignment explanation
Indices: 26154314--26154425 Score: 140
Period size: 27 Copynumber: 4.1 Consensus size: 27
26154304 AGCATGGCTG
* *
26154314 CCAGA-ACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
26154340 CTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
26154368 CCAGA-ACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
26154395 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
26154422 CCAG
1 CCAG
26154426 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 5, Indels: 9
0.84 0.06 0.10
Matches are distributed among these distances:
26 5 0.07
27 55 0.72
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:26154378 original size:54 final size:54
Alignment explanation
Indices: 26154314--26154425 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
26154304 AGCATGGCTG
* *
26154314 CCAGAACAGATA-ATGTGACAGAGTCACTAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
26154368 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
26154422 CCAG
1 CCAG
26154426 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 35 0.67
55 17 0.33
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:26154830 original size:8 final size:8
Alignment explanation
Indices: 26154814--26154845 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
26154804 TCTCAAATAC
26154814 CGGCTTTT
1 CGGCTTTT
*
26154822 CGGCATTT
1 CGGCTTTT
26154830 CGGCTTTT
1 CGGCTTTT
26154838 CGGCTTTT
1 CGGCTTTT
26154846 GACGATCTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.25, G:0.25, T:0.47
Consensus pattern (8 bp):
CGGCTTTT
Found at i:26160716 original size:27 final size:26
Alignment explanation
Indices: 26160680--26160792 Score: 138
Period size: 27 Copynumber: 4.2 Consensus size: 26
26160670 CAGCTCGGCT
* *
26160680 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGGCAGAGCC
*
26160706 ACCAGATACAGATAATCATGGCAGAGCC
1 ACCAGA-ACAGATAAT-GTGGCAGAGCC
26160734 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGGCAGAGCC
*
26160761 ACCAGATA-AGATAATTGTGGCATAGCC
1 ACCAGA-ACAGATAA-TGTGGCAGAGCC
26160788 ACCAG
1 ACCAG
26160793 GACGCTTCGT
Statistics
Matches: 77, Mismatches: 5, Indels: 9
0.85 0.05 0.10
Matches are distributed among these distances:
26 7 0.09
27 53 0.69
28 17 0.22
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGGCAGAGCC
Found at i:26160743 original size:54 final size:54
Alignment explanation
Indices: 26160680--26160792 Score: 165
Period size: 54 Copynumber: 2.1 Consensus size: 54
26160670 CAGCTCGGCT
*
26160680 ACCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCATGGCAGAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGATA-AGATAATCATGGCAGAGCC
* ** *
26160734 ACCAGAACAGATATATGTGGCAGAGCCACCAGATAAGATAATTGTGGCATAGCC
1 ACCAGAACAGATATATGTGACAGAGCCACCAGATAAGATAATCATGGCAGAGCC
26160788 ACCAG
1 ACCAG
26160793 GACGCTTCGT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.64
55 19 0.36
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.16
Consensus pattern (54 bp):
ACCAGAACAGATATATGTGACAGAGCCACCAGATAAGATAATCATGGCAGAGCC
Found at i:26162821 original size:106 final size:106
Alignment explanation
Indices: 26162636--26162847 Score: 415
Period size: 106 Copynumber: 2.0 Consensus size: 106
26162626 TCAAAAGCAA
26162636 CAACTATAGCAAAGAGTTCCTTTTCAGTTACCGTATGATTGAGTTGGGCTTCCGTCACAGTTCTA
1 CAACTATAGCAAAGAGTTCCTTTTCAGTTACCGTATGATTGAGTTGGGCTTCCGTCACAGTTCTA
26162701 CTTGCATAGTAAATAGGGTGAAACACTTTGTTTCTTCTTTG
66 CTTGCATAGTAAATAGGGTGAAACACTTTGTTTCTTCTTTG
*
26162742 CAACTATAGCAAAGAGTTCCTTTTCAGTTATCGTATGATTGAGTTGGGCTTCCGTCACAGTTCTA
1 CAACTATAGCAAAGAGTTCCTTTTCAGTTACCGTATGATTGAGTTGGGCTTCCGTCACAGTTCTA
26162807 CTTGCATAGTAAATAGGGTGAAACACTTTGTTTCTTCTTTG
66 CTTGCATAGTAAATAGGGTGAAACACTTTGTTTCTTCTTTG
26162848 GCCCATCATA
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 105 1.00
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (106 bp):
CAACTATAGCAAAGAGTTCCTTTTCAGTTACCGTATGATTGAGTTGGGCTTCCGTCACAGTTCTA
CTTGCATAGTAAATAGGGTGAAACACTTTGTTTCTTCTTTG
Found at i:26167427 original size:6 final size:6
Alignment explanation
Indices: 26167416--26167445 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
26167406 ATTGCATGAA
26167416 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT
26167446 TTGTCTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:26167730 original size:96 final size:96
Alignment explanation
Indices: 26167566--26167881 Score: 454
Period size: 96 Copynumber: 3.3 Consensus size: 96
26167556 TGTGAATATT
**
26167566 GAGATCCCGTATAAGACCATATCTGGGATATGGCATCGACATCGAGATGAGATTTCGTGTAAGAC
1 GAGATCCCGTATAAGACCATATCTGGGATATGGCATCGACATCGAGATGAGATCCCGTGTAAGAC
*
26167631 CATATCTGGGATATGGCATCAGCATCGATAA
66 CATATCTGGGATATGGCATCGGCATCGATAA
* * *
26167662 GAGATCCCATATAAGACCATATCTGGTATATGGCATCGGCATCGAGATGAGATCCCGTGTAAGAC
1 GAGATCCCGTATAAGACCATATCTGGGATATGGCATCGACATCGAGATGAGATCCCGTGTAAGAC
* *
26167727 CATATTTTGGATATGGCATCGGCATCGATAA
66 CATATCTGGGATATGGCATCGGCATCGATAA
* * * * *
26167758 GAGGTCCCGTATAAGACCATGTTTGGGACATGGCATCGACATC-AGTATGAGATCCCATGTAAGA
1 GAGATCCCGTATAAGACCATATCTGGGATATGGCATCGACATCGAG-ATGAGATCCCGTGTAAGA
* * *
26167822 CCATATCTGGAATATGGCATTGGCATCGATAT
65 CCATATCTGGGATATGGCATCGGCATCGATAA
* *
26167854 GAGGTCCCGTATAAGACCATGTCTGGGA
1 GAGATCCCGTATAAGACCATATCTGGGA
26167882 CATAGCATTA
Statistics
Matches: 197, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
95 2 0.01
96 195 0.99
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (96 bp):
GAGATCCCGTATAAGACCATATCTGGGATATGGCATCGACATCGAGATGAGATCCCGTGTAAGAC
CATATCTGGGATATGGCATCGGCATCGATAA
Found at i:26167890 original size:48 final size:48
Alignment explanation
Indices: 26167565--26167881 Score: 393
Period size: 48 Copynumber: 6.6 Consensus size: 48
26167555 ATGTGAATAT
* *
26167565 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGACATCGAGA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATA
** * *
26167613 TGAGATTTCGTGTAAGACCATATCTGGGATATGGCATCAGCATCGATA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATA
* * * *
26167661 AGAGATCCCATATAAGACCATATCTGGTATATGGCATCGGCATCGAGA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATA
* * *
26167709 TGAGATCCCGTGTAAGACCATATTTTGGATATGGCATCGGCATCGATA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATA
* * * * * *
26167757 AGAGGTCCCGTATAAGACCATGTTTGGGACATGGCATCGACATC-AGTA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGA-TA
* * * *
26167805 TGAGATCCCATGTAAGACCATATCTGGAATATGGCATTGGCATCGATA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATA
* *
26167853 TGAGGTCCCGTATAAGACCATGTCTGGGA
1 TGAGATCCCGTATAAGACCATATCTGGGA
26167882 CATAGCATTA
Statistics
Matches: 224, Mismatches: 43, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
47 1 0.00
48 222 0.99
49 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.26
Consensus pattern (48 bp):
TGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATA
Found at i:26167917 original size:144 final size:143
Alignment explanation
Indices: 26167565--26167917 Score: 388
Period size: 144 Copynumber: 2.4 Consensus size: 143
26167555 ATGTGAATAT
* *
26167565 TGAGATCCCGTATAAGACCATATCTGGGATATGGCA-TCGACATCGAGATGAGATTTCGTGTAAG
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATTAG-CATCGATATGAGATTT-GTGTAAG
* *
26167629 ACCATATCTGGGATATGGCATCAGCATCGATAAGAGATCCCATATAAGACCATATCTGGTATATG
64 ACCATATCTGGGACATGGCATCAGCATCGATAAGAGATCCCATATAAGACCATATCTGGAATATG
26167694 GCATCGGCATCGAGA
129 GCATCGGCATCGAGA
* * * ** * * ** *
26167709 TGAGATCCCGTGTAAGACCATATTTTGGATATGGCATCGGCATCGATAAGAGGTCCCGTATAAGA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATTAGCATCGATATGAGAT-TTGTGTAAGA
* * * *
26167774 CCATGTTTGGGACATGGCATC-GACATC-AGTATGAGATCCCATGTAAGACCATATCTGGAATAT
65 CCATATCTGGGACATGGCATCAG-CATCGA-TAAGAGATCCCATATAAGACCATATCTGGAATAT
* *
26167837 GGCATTGGCATCGATA
128 GGCATCGGCATCGAGA
* * * * * * *
26167853 TGAGGTCCCGTATAAGACCATGTCTGGGACATAGCATTAGCACCGTTATGAGACTTTGGGTAAGA
1 TGAGATCCCGTATAAGACCATATCTGGGATATGGCATTAGCATCGATATGAGA-TTTGTGTAAGA
26167918 TCGTAGTTGG
Statistics
Matches: 168, Mismatches: 36, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
143 2 0.01
144 164 0.98
145 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (143 bp):
TGAGATCCCGTATAAGACCATATCTGGGATATGGCATTAGCATCGATATGAGATTTGTGTAAGAC
CATATCTGGGACATGGCATCAGCATCGATAAGAGATCCCATATAAGACCATATCTGGAATATGGC
ATCGGCATCGAGA
Found at i:26171939 original size:47 final size:47
Alignment explanation
Indices: 26171877--26172406 Score: 855
Period size: 47 Copynumber: 11.3 Consensus size: 47
26171867 CCCTTCGGGA
* * * *
26171877 CTTATCACATTTATACACTTTCACATCCATCACATTGCCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * * * *
26171924 CTTATCATATATATACACCTTCACATCCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
26171971 CTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
26172018 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
26172065 CTTGTCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
26172112 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
26172159 TTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
26172206 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
26172253 TTTATCTCATATATACACTTTCACATTCATCACATTGGCCATTCA-GC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATT-AGGC
*
26172300 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
26172347 CTTATCACATATATACACTTTCACATTCATCCCATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
26172394 CTTATCACATATA
1 CTTATCACATATA
26172407 CATATCTTGT
Statistics
Matches: 448, Mismatches: 33, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
47 447 1.00
48 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.35
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:26184955 original size:43 final size:43
Alignment explanation
Indices: 26184880--26185055 Score: 302
Period size: 43 Copynumber: 4.1 Consensus size: 43
26184870 GTTAAATCCC
* * *
26184880 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
26184921 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
26184964 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
26185007 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
26185050 GCAGGC
1 GCAGGC
26185056 GTAATGCCTG
Statistics
Matches: 129, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
41 15 0.12
42 2 0.02
43 112 0.87
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:26185452 original size:45 final size:42
Alignment explanation
Indices: 26185385--26185492 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
26185375 TTGACTTGAT
* *
26185385 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
26185430 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
26185472 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
26185493 ACAGGCAAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:26190260 original size:78 final size:80
Alignment explanation
Indices: 26190126--26190347 Score: 269
Period size: 78 Copynumber: 2.8 Consensus size: 80
26190116 TTGAATGATG
* * * **
26190126 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCGAAGGCATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGCCCGAAGGCATT
*
26190188 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
26190204 TCCGGGATAAG-CCCGAAGGCATTTGTGC-AAGATACTAAT-TCCGGGCTAAGCCCGAAGGCATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGCCCGAAGGCATT
*
26190266 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * *
26190282 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAG-CCCGAAGGCATT
26190346 TG
65 TG
26190348 AACAAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
77 9 0.07
78 61 0.48
79 40 0.32
80 16 0.13
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:26190309 original size:40 final size:39
Alignment explanation
Indices: 26190126--26190347 Score: 231
Period size: 39 Copynumber: 5.6 Consensus size: 39
26190116 TTGAATGATG
*
26190126 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* ** *
26190165 TCCGGACTAAGATCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
26190204 TCCGGGATAAGCCCGAAGGCATTTGTGCAAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
*
26190243 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
*
26190282 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
26190323 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
26190348 AACAAGGAGC
Statistics
Matches: 158, Mismatches: 18, Indels: 13
0.84 0.10 0.07
Matches are distributed among these distances:
38 7 0.04
39 91 0.58
40 57 0.36
41 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:26198185 original size:40 final size:39
Alignment explanation
Indices: 26198101--26198285 Score: 191
Period size: 40 Copynumber: 4.6 Consensus size: 39
26198091 TTGAATGATG
*
26198101 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-T-ACTAA-A
* *
26198141 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGATACTAAA
* *
26198181 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
*
26198220 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGA-TACTA-AA
*
26198261 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
26198286 AACAAGGAGC
Statistics
Matches: 126, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 76 0.60
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:26198237 original size:79 final size:81
Alignment explanation
Indices: 26198101--26198285 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 81
26198091 TTGAATGATG
26198101 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
26198165 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
26198180 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
26198241 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
26198260 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26198286 AACAAGGAGC
Statistics
Matches: 93, Mismatches: 6, Indels: 12
0.84 0.05 0.11
Matches are distributed among these distances:
78 2 0.02
79 56 0.60
80 35 0.38
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:26198307 original size:79 final size:78
Alignment explanation
Indices: 26198102--26198318 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 78
26198092 TGAATGATGT
* *
26198102 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-AAGTGACTATATCCGG-TTAAG-TCCGAAGGCATTT
*
26198166 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
* * *
26198182 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCC-GGTTAAGT-CCGAAGGCATTTG
26198246 TGCGA-ATTACT-ATAA
64 TGCGAGA-TACTAAT-A
* ** *
26198261 CCGGGCTATGTCCCGAAGGCATTTGAACAAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGA-CTATATCCGGTT-AAGTCCGAAGG
26198319 TACGTGATTT
Statistics
Matches: 116, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
78 4 0.03
79 66 0.57
80 46 0.40
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTGACTATATCCGGTTAAGTCCGAAGGCATTTGTG
CGAGATACTAATA
Found at i:26205015 original size:22 final size:24
Alignment explanation
Indices: 26204990--26205035 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
26204980 ATTCTATGCT
26204990 AATTGATAA-AGAT-TAA-TATATA
1 AATT-ATAATAGATATAATTATATA
26205012 AATTATAATAGATATAATTATATA
1 AATTATAATAGATATAATTATATA
26205036 TTAAAGATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 3 0.14
24 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
AATTATAATAGATATAATTATATA
Found at i:26213693 original size:39 final size:39
Alignment explanation
Indices: 26213639--26213758 Score: 231
Period size: 39 Copynumber: 3.1 Consensus size: 39
26213629 CGAACCCTTT
26213639 CTAAAGTATGTTTTGGGCTTCGTAGACTCAAATAAGGGA
1 CTAAAGTATGTTTTGGGCTTCGTAGACTCAAATAAGGGA
26213678 CTAAAGTATGTTTTGGGCTTCGTAGACTCAAATAAGGGA
1 CTAAAGTATGTTTTGGGCTTCGTAGACTCAAATAAGGGA
*
26213717 CTAAAGTATGTTTTGGGCTTCGTACACTCAAATAAGGGA
1 CTAAAGTATGTTTTGGGCTTCGTAGACTCAAATAAGGGA
26213756 CTA
1 CTA
26213759 TGTGTAAGTA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (39 bp):
CTAAAGTATGTTTTGGGCTTCGTAGACTCAAATAAGGGA
Found at i:26225997 original size:40 final size:40
Alignment explanation
Indices: 26225896--26226120 Score: 263
Period size: 40 Copynumber: 5.6 Consensus size: 40
26225886 TATTCGAATG
* *
26225896 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * * * * *
26225937 ACAACCGGACTAAGATCCGAAGGCATTCGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* * *
26225977 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
26226017 ATATTCGGGCTAAAACCCGAAGGCATTTGTGCTAGGGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
26226057 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
*
26226097 ACATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
26226121 CTTGCGCAAG
Statistics
Matches: 152, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.81
41 28 0.18
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:26226070 original size:80 final size:80
Alignment explanation
Indices: 26225896--26226156 Score: 285
Period size: 80 Copynumber: 3.3 Consensus size: 80
26225886 TATTCGAATG
* * * *
26225896 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTACATCCGGGCTAAGACCCGAAGGC
*
26225961 ATTCGTGCGAGTTGCT
65 ATTCGTGCGAGTGGCT
* * * * * * *
26225977 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATTCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
* *
26226042 TTTGTGCTAG-GGACT
66 TTCGTGCGAGTGG-CT
* * *
26226057 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGGGCTAAGACCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
* * * *
26226122 TT-GCGCAAGTAGTT
66 TTCGTGCGAGTGGCT
*
26226136 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
26226157 ATTACTTGAG
Statistics
Matches: 149, Mismatches: 29, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
78 14 0.09
79 13 0.09
80 91 0.61
81 31 0.21
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.23
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTACATCCGGGCTAAGACCCGAAGGCA
TTCGTGCGAGTGGCT
Found at i:26226115 original size:120 final size:121
Alignment explanation
Indices: 26225896--26226120 Score: 294
Period size: 120 Copynumber: 1.9 Consensus size: 121
26225886 TATTCGAATG
** *
26225896 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
* * *
26225961 ATTCGTGCGAGTTGCTATATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
66 ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
* * * *
26226017 ATATTCGGGCTAAAACCCGAAGGCATTTGTGCTAGG-GACTATATCCGGGCTAAG-TCCCGAAGG
1 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGTGACTACAACCGGACTAAGAT-CCGAAGG
* * *
26226080 CATTTATGCTAG-TGACCACATCCGGGCTAAGACCCGAAGGC
65 CATTCATGCGAGTTG-CCACATCCAGGCTAAGACCCGAAGGC
26226121 CTTGCGCAAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
119 3 0.03
120 54 0.61
121 32 0.36
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (121 bp):
ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGGTGACTACAACCGGACTAAGATCCGAAGGC
ATTCATGCGAGTTGCCACATCCAGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
Found at i:26237266 original size:23 final size:24
Alignment explanation
Indices: 26237236--26237282 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
26237226 AGAGAAGTGG
*
26237236 AGCCAAATTG-GGAATTTGGGGAT
1 AGCCAAATTGCCGAATTTGGGGAT
*
26237259 AGCCAAATTGCCGATTTTGGGGAT
1 AGCCAAATTGCCGAATTTGGGGAT
26237283 TCTAGGCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.28
Consensus pattern (24 bp):
AGCCAAATTGCCGAATTTGGGGAT
Found at i:26238285 original size:28 final size:28
Alignment explanation
Indices: 26238245--26238335 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
26238235 ATTGCATGAC
* *
26238245 TATGATTGTGATTAGGCCTGACGAGCCA
1 TATGAATGTGATTAGGCCTAACGAGCCA
* * *
26238273 TATGAATGTGATTAGGACTAATGGGCCA
1 TATGAATGTGATTAGGCCTAACGAGCCA
* * * *
26238301 TATGAATGGGATTGGGCCTAAGGGGCCA
1 TATGAATGTGATTAGGCCTAACGAGCCA
*
26238329 AATGAAT
1 TATGAAT
26238336 AAGTGTGGAT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (28 bp):
TATGAATGTGATTAGGCCTAACGAGCCA
Found at i:26240813 original size:23 final size:24
Alignment explanation
Indices: 26240782--26240826 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26240772 TTTCCACCTG
*
26240782 TTAAGCTC-TATGAGCTTCCTGTT
1 TTAAACTCTTATGAGCTTCCTGTT
*
26240805 TTAAACTCTTATGAGTTTCCTG
1 TTAAACTCTTATGAGCTTCCTG
26240827 ATATAGCCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (24 bp):
TTAAACTCTTATGAGCTTCCTGTT
Found at i:26241245 original size:17 final size:17
Alignment explanation
Indices: 26241202--26241246 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
26241192 AAATTCATGA
*
26241202 AAATG-ATGGTAT-ATG
1 AAATGAATGATATAATG
*
26241217 AAAT-ACTGATATAATG
1 AAATGAATGATATAATG
26241233 AAATGAATGATATA
1 AAATGAATGATATA
26241247 TGTTTATGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
15 9 0.38
16 7 0.29
17 8 0.33
ACGTcount: A:0.49, C:0.02, G:0.18, T:0.31
Consensus pattern (17 bp):
AAATGAATGATATAATG
Found at i:26247789 original size:29 final size:29
Alignment explanation
Indices: 26247713--26247825 Score: 115
Period size: 29 Copynumber: 3.9 Consensus size: 29
26247703 TACATACATG
26247713 CATATGGCCCACTAGGCCCAA-TC-TCATT
1 CATATGGCCCACTAGGCCCAATTCAT-ATT
* *
26247741 CATATAGCCCATCT-TGCCCAATTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* * * *
26247770 CTTATGGCCTACTAGTCCCAATTCACATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* *
26247799 CATATGGCCCATTAGGCCCAAATCATA
1 CATATGGCCCACTAGGCCCAATTCATA
26247826 GTATACTCAT
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
28 18 0.27
29 48 0.72
30 1 0.01
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:26247818 original size:58 final size:57
Alignment explanation
Indices: 26247715--26247825 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
26247705 CATACATGCA
* * *
26247715 TATGGCCCACTAGGCCCAATCTCATTCATATAGCCCATCTTGCCCAATTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATAGCCCATCTGGCCCAAATCATATTCT
* * *
26247772 TATGGCCTACTAGTCCCAATTCACATTCATATGGCCCAT-TAGGCCCAAATCATA
1 TATGGCCCACTAGGCCCAA-TCACATTCATATAGCCCATCT-GGCCCAAATCATA
26247826 GTATACTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 18 0.39
58 28 0.61
ACGTcount: A:0.27, C:0.32, G:0.12, T:0.30
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATAGCCCATCTGGCCCAAATCATATTCT
Found at i:26258325 original size:9 final size:9
Alignment explanation
Indices: 26258311--26258336 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26258301 ATGAATTAGG
26258311 GATTAAATT
1 GATTAAATT
26258320 GATTAAATT
1 GATTAAATT
26258329 GATTAAAT
1 GATTAAAT
26258337 GTGAAAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (9 bp):
GATTAAATT
Found at i:26259994 original size:49 final size:49
Alignment explanation
Indices: 26259937--26260109 Score: 231
Period size: 49 Copynumber: 3.5 Consensus size: 49
26259927 TGAGGTCACG
* *
26259937 TGTGTAGTACTAAGTGTAGGCTAATACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * * ** * *
26259986 TGTGTAGTACTAAGCGCA-GCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
* *
26260035 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACTGGATAATTGGTCGAA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
26260084 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
26260110 TGCGTACCAG
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
48 18 0.17
49 68 0.65
50 18 0.17
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:26262743 original size:46 final size:46
Alignment explanation
Indices: 26262693--26262868 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
26262683 TGATTGAGCA
26262693 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
26262739 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26262784 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26262832 -CCTAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26262869 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 7 0.06
46 59 0.53
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26262849 original size:93 final size:93
Alignment explanation
Indices: 26262690--26262861 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
26262680 GGATGATTGA
*
26262690 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
26262755 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
26262783 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAA-CTCGTTGAG
26262847 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
26262862 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 4 0.05
93 72 0.95
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26270957 original size:996 final size:988
Alignment explanation
Indices: 26269118--26271107 Score: 3715
Period size: 996 Copynumber: 2.0 Consensus size: 988
26269108 CCTAAACTGC
*
26269118 TTAAATTGAAAGTAGGGACTAAATTGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTAGTATG
1 TTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTAGTATG
26269183 AAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATGGA
66 AAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATGGA
26269248 CAAATTAGGACATGGAAGGAATTTTTGGAAAGTTAGTAGTAAGGGTATTTGGTCATTAGTTATTA
131 CAAATTAGGACATGGAAGGAATTTTTGGAAAGTTAGTAGTAAGGGTATTTGGTCATTAGTTATTA
26269313 AAATGAATTAAAAACAAAATAAAAGCCAATTTTTGTCCATCTTCTTCATTAGGCCGAAATTTCAA
196 AAATGAATTAAAAACAAAATAAAAGCCAATTTTTGTCCATCTTCTTCATTAGGCCGAAATTTCAA
*
26269378 GGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCCTG
261 GGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCCCG
26269443 TTTTAATGATTTTTACGATTTTGAGATCCCGTAACTCGATAAAGCTTATGTTAGCAATAATTTAA
326 TTTTAATGATTTTTACGATTTTGAGATCCCGTAACTCGATAAAGCTTATGTTAGCAATAATTTAA
26269508 CCTAGGGTTTATATTTGGAAAAATACCCATAGGTGAAATTGTGTATTTTGATGTTTTATGATAGA
391 CCTAGGGTTTATATTTGGAAAAATACCCATAGGTGAAATTGTGTATTTTGATGTTTTATGATAGA
26269573 ATATGAAGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGCAAAAACGAGTAAAAG
456 ATATGAAGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGCAAAAACGAGTAAAAG
26269638 GGCTTAATCGGTAAAATACCTAATAGTCACAAGTACATGTTAGAGTGAGAATTGATGTTTCCATA
521 GGCTTAATCGGTAAAATACCTAATAGTCACAAGTACATGTTAGAGTGAGAATTGATGTTTCCATA
26269703 GAAGAAAAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATAAATTTTAATCCCGAGCCTA
586 GAAGAAAAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATAAATTTTAATCCCGAGCCTA
26269768 GGGGCAAAAATGTAAATATGCAAAATTTAGGGTAAAATTGTAATTTTGCCAAAATTTGAGTTAAG
651 GGGGCAAAAATGTAAATATGCAAAATTTAGGGTAAAATTGTAATTTTGCCAAAATTTGAGTTAAG
26269833 GATTAATTTGATAATGTGAGTATTAAATAAGCTAAATGTGTTATTTTAGATCAAGAAAGACGTGG
716 GATTAATTTGATAATGTGAGTATTAAATAAGCTAAATGTGTTATTTTAGATCAAGAAAGACGTGG
26269898 AATCGACCTCAATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAATCTTTGTATTTTGGTA
781 AATCGACCTCAATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAATCTTTGTATTTTGGTA
26269963 CCAAGGTAAGTTCATGTGTAAATAATGTAGCATAAT-GTTATTTTTAAGTTATTGATGTTAATTA
846 CCAAGGT-AGTTCATGTGTAAATAATGTAGCATAATGGTTATTTTTAAGTTATTGATGTTAATTA
*
26270027 TATGTTATGCTGAATTTTATTATGAAATGTATGCTTTGTGGTTAATTTCAAATAATATGTAAATT
910 TATGTTATGCTGAATTTTATTATGAAATGTATGCTTTGTGGTTAATTTCAAATAACATGTAAATT
26270092 ATGTGAA-TACTTG
975 ATGTGAACTACTTG
26270105 TTTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTTAGTA
1 -TTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAG-TTTTAGTA
26270170 TGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATG
64 TGAAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATG
26270235 GACAAAATTAGGACATGGAAGGAATTTTTGGAAAGTTTAGTAGTAAGGGTATTTTGGTCATTTAG
129 GAC-AAATTAGGACATGGAAGGAATTTTTGGAAAG-TTAGTAGTAAGGGTA-TTTGGTCA-TTAG
26270300 TTATTAAAATGAATTAAAAACAAAATTAAAAGCCAATTTTTGTCCATCTTCTTCATTAGGCCGAA
190 TTATTAAAATGAATTAAAAACAAAA-TAAAAGCCAATTTTTGTCCATCTTCTTCATTAGGCCGAA
26270365 ATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCA
254 ATTTCAAGGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCA
26270430 AGCCCCGTTTTTAATGA-TTTTACGATTTTGAGATCCCGGTAACTCGATAAAGCTTATGTTAGCA
319 AGCCCCG-TTTTAATGATTTTTACGATTTTGAGATCCC-GTAACTCGATAAAGCTTATGTTAGCA
*
26270494 ATAATTTAACCTAGGGTTTATATTTGGAAAGATACCCATAGGTGAAATTTGTGTATTTTGATGTT
382 ATAATTTAACCTAGGGTTTATATTTGGAAAAATACCCATAGGTGAAA-TTGTGTATTTTGATGTT
26270559 TTATGATAGAATATGAAGTTTTAAATTATGTTAGACAACTTGTACTACTCGA-TTTAAGCAAAAA
446 TTATGATAGAATATGAAGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGCAAAAA
* *
26270623 CGAGTAAAAGGGCTTAATCGGTAAAGTTACCTAATAGTCGCAAGTACATGTTAGAGTGAGAATTT
511 CGAGTAAAAGGGCTTAATCGGTAAA-ATACCTAATAGTCACAAGTACATGTTAGAGTGAGAA-TT
*
26270688 GATG-TTCCATAGAAGAGAAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATAAATTTTA
574 GATGTTTCCATAGAAGAAAAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATAAATTTTA
*
26270752 ATCCCCGAGCCTAGGGGCAAAAATGTAAATATGCAAAAGTTTGGGGTAAAATTGTAATTTTGCC-
639 AT-CCCGAGCCTAGGGGCAAAAATGTAAATATGCAAAA-TTTAGGGTAAAATTGTAATTTTGCCA
26270816 AAATTTGAGTTAAGGATTAATTTGATAATGTGAGTATTAAATAAGCTAAATGTGTTATTTTAGAT
702 AAATTTGAGTTAAGGATTAATTTGATAATGTGAGTATTAAATAAGCTAAATGTGTTATTTTAGAT
26270881 CAAGAAAGACGTGGAATCGACCTCAATCGAGG-AAAGAAAAGATTGTGGACTAAATTGCAAAATC
767 CAAGAAAGACGTGGAATCGACCTCAATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAATC
*
26270945 TTTGTATTTTGGTACCAAGGTAGTTCATGTGTAAATAATGTATCATAATGGTTATTTTTAAGTTA
832 TTTGTATTTTGGTACCAAGGTAGTTCATGTGTAAATAATGTAGCATAATGGTTATTTTTAAGTTA
26271010 TTGATGTTAATTATATGTTATGCTGAATTTTATTATGAAATGTATGCTTTGTGGTTAATTTCAAA
897 TTGATGTTAATTATATGTTATGCTGAATTTTATTATGAAATGTATGCTTTGTGGTTAATTTCAAA
26271075 TAACATGTAAATTATGTGAACTACTTG
962 TAACATGTAAATTATGTGAACTACTTG
26271102 TTAAAT
1 TTAAAT
26271108 ATAATTGTTA
Statistics
Matches: 978, Mismatches: 9, Indels: 22
0.97 0.01 0.02
Matches are distributed among these distances:
988 54 0.06
989 76 0.08
990 31 0.03
991 15 0.02
992 8 0.01
993 29 0.03
994 130 0.13
995 145 0.15
996 322 0.33
997 144 0.15
998 24 0.02
ACGTcount: A:0.36, C:0.10, G:0.19, T:0.35
Consensus pattern (988 bp):
TTAAATTGAAAGTAGGGACTAAATCGAATAAGTTGCAAAACTTGCATTCTAGAAGTTTTAGTATG
AAATTGTTTTGGAATATTAATGAGGAGGTCTTAAATAGCAATTTGACCAATTTTAAGTTCATGGA
CAAATTAGGACATGGAAGGAATTTTTGGAAAGTTAGTAGTAAGGGTATTTGGTCATTAGTTATTA
AAATGAATTAAAAACAAAATAAAAGCCAATTTTTGTCCATCTTCTTCATTAGGCCGAAATTTCAA
GGGTTCTCCATAGCTAGGGTTTGTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCCCG
TTTTAATGATTTTTACGATTTTGAGATCCCGTAACTCGATAAAGCTTATGTTAGCAATAATTTAA
CCTAGGGTTTATATTTGGAAAAATACCCATAGGTGAAATTGTGTATTTTGATGTTTTATGATAGA
ATATGAAGTTTTAAATTATGTTAGACAACTTGTACTACTCGATTTTAAGCAAAAACGAGTAAAAG
GGCTTAATCGGTAAAATACCTAATAGTCACAAGTACATGTTAGAGTGAGAATTGATGTTTCCATA
GAAGAAAAAGTGATCAGCATGTTGTAAAACATAAGAATAAGGAATAAATTTTAATCCCGAGCCTA
GGGGCAAAAATGTAAATATGCAAAATTTAGGGTAAAATTGTAATTTTGCCAAAATTTGAGTTAAG
GATTAATTTGATAATGTGAGTATTAAATAAGCTAAATGTGTTATTTTAGATCAAGAAAGACGTGG
AATCGACCTCAATCGAGGAAAAGAAAAGATTGTGGACTAAATTGCAAAATCTTTGTATTTTGGTA
CCAAGGTAGTTCATGTGTAAATAATGTAGCATAATGGTTATTTTTAAGTTATTGATGTTAATTAT
ATGTTATGCTGAATTTTATTATGAAATGTATGCTTTGTGGTTAATTTCAAATAACATGTAAATTA
TGTGAACTACTTG
Found at i:26271287 original size:46 final size:46
Alignment explanation
Indices: 26271237--26271410 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
26271227 TGATTGAGCA
26271237 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26271283 TCCGAACTCGTTGAGTTGAGTCCGAGTT--CTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
26271327 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26271375 -CCTAAGCTCG-TGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26271411 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 7, Indels: 23
0.79 0.05 0.16
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
44 4 0.04
45 29 0.26
46 60 0.55
48 4 0.04
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26283989 original size:40 final size:40
Alignment explanation
Indices: 26283900--26284163 Score: 351
Period size: 40 Copynumber: 6.7 Consensus size: 40
26283890 TTGAATGCTG
* *
26283900 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
26283939 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26283979 TCCGGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26284018 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26284058 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26284098 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26284139 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26284164 AACGAGGAGC
Statistics
Matches: 204, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 52 0.25
40 142 0.70
41 10 0.05
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26284181 original size:120 final size:118
Alignment explanation
Indices: 26283900--26284196 Score: 329
Period size: 119 Copynumber: 2.5 Consensus size: 118
26283890 TTGAATGCTG
* *
26283900 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
26283960 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTACGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAATTACTAAA
* ** * *
26284018 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* * *
26284083 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTACGAATTACTA-AA
* * *
26284139 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
26284197 TACGTGATTT
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 63 0.41
121 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTACGAATTACTAAA
Found at i:26289814 original size:40 final size:40
Alignment explanation
Indices: 26289651--26289800 Score: 257
Period size: 40 Copynumber: 3.8 Consensus size: 40
26289641 ATAATAGTTT
26289651 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
26289691 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
*
26289731 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTAC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
* *
26289771 TATAA-CCGGGCTATGTCCCGAAGGCATTTG
1 TA-AATCCGGGTTAAGTCCCGAAGGCATTTG
26289801 AACGAGGAGC
Statistics
Matches: 106, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
40 104 0.98
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
Found at i:26289818 original size:80 final size:80
Alignment explanation
Indices: 26289651--26289833 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
26289641 ATAATAGTTT
* *
26289651 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGC
1 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGC
** *
26289716 ATTTGTGCGAGTTAC
66 ATTTGAACGAGTGAC
*
26289731 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA-CCGGGCTATGTCCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTA-AATCCGGGCTAAGTCCCGAAGG
26289795 CATTTGAACGAG-GAGC
65 CATTTGAACGAGTGA-C
* * *
26289811 TATATCC-GGTTAAATTCCGAAGG
1 TAAATCCGGGTTAAGTCCCGAAGG
26289834 TACGTGATTT
Statistics
Matches: 92, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
79 15 0.16
80 75 0.82
81 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTAAATCCGGGCTAAGTCCCGAAGGC
ATTTGAACGAGTGAC
Found at i:26291303 original size:15 final size:15
Alignment explanation
Indices: 26291274--26291318 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
26291264 AGTGCTGTAA
26291274 ATGGTATTTCCTTATC
1 ATGG-ATTTCCTTATC
*
26291290 ATGGATTTCTTTATC
1 ATGGATTTCCTTATC
*
26291305 TTGGATTTCCTTAT
1 ATGGATTTCCTTAT
26291319 TCTAGGCTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 22 0.85
16 4 0.15
ACGTcount: A:0.18, C:0.16, G:0.13, T:0.53
Consensus pattern (15 bp):
ATGGATTTCCTTATC
Found at i:26293887 original size:49 final size:50
Alignment explanation
Indices: 26293808--26294053 Score: 264
Period size: 49 Copynumber: 4.9 Consensus size: 50
26293798 ATCTATTATG
* *
26293808 AGGTCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTATCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
** * * *
26293858 -GGTCGTATGTGTAGTACTAAGTGTAGGCTACTATGCGTACCCGATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAA-TT
* * * * * * * **
26293908 CGATCACGTGTGTAGTACTAAGCGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* *
26293958 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
* * *
26294008 -GGTCGA-ATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 AGGTC-ACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATA
26294054 GCTTTGGCTA
Statistics
Matches: 164, Mismatches: 29, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
49 81 0.49
50 48 0.29
51 35 0.21
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATT
Found at i:26293999 original size:101 final size:98
Alignment explanation
Indices: 26293811--26294040 Score: 273
Period size: 100 Copynumber: 2.3 Consensus size: 98
26293801 TATTATGAGG
* * * **
26293811 TCACATGTGTAGTACTAAGTGTAGGCTACTATGTGTATCGGATAATTGGTCGTATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACT
* *
26293876 AAGTGTAGGCTACTATGCGTACCCGATAACTTCGA
66 AAGTGCAGGCTACTACGCGTACCCGATAA-TT-GA
* * ** *
26293911 TCACGTGTGTAGTACTAAGCGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT-GGTCACATGTGTAGTAC
* * *
26293976 TAAGTGCAGGCTACTACGTGTACCGGATAATTGG
65 TAAGTGCAGGCTACTACGCGTACCCGATAATTGA
*
26294010 TCGA-ATGTGTAGTACTAAGTACAGGCTACTA
1 TC-ACATGTGTAGTACTAAGTGCAGGCTACTA
26294041 TGCGTACCAG
Statistics
Matches: 110, Mismatches: 18, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
99 27 0.25
100 43 0.39
101 40 0.36
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (98 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATTGGTCACATGTGTAGTACT
AAGTGCAGGCTACTACGCGTACCCGATAATTGA
Found at i:26300673 original size:40 final size:40
Alignment explanation
Indices: 26300540--26300648 Score: 175
Period size: 40 Copynumber: 2.8 Consensus size: 40
26300530 TTTAGTGGCT
* *
26300540 TTAGCGGCGCTCTTTAG-AAATGCCGCTAAAGATCGAGTA
1 TTAGCGGTGCTTTTTAGAAAATGCCGCTAAAGATCGAGTA
26300579 TTAGCGGTGCTTTTTAGAAAATGCCGCTAAAGATCGAGTA
1 TTAGCGGTGCTTTTTAGAAAATGCCGCTAAAGATCGAGTA
* *
26300619 TTAGCAGTGCTTTTTATAAAATGCCGCTAA
1 TTAGCGGTGCTTTTTAGAAAATGCCGCTAA
26300649 TGCTTGATCT
Statistics
Matches: 65, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 15 0.23
40 50 0.77
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.30
Consensus pattern (40 bp):
TTAGCGGTGCTTTTTAGAAAATGCCGCTAAAGATCGAGTA
Found at i:26301109 original size:22 final size:22
Alignment explanation
Indices: 26301084--26301128 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26301074 GAGTTACTAT
* *
26301084 TTTAAGGTTTATGGCTTATGGG
1 TTTAAGGATTATGGCTTAAGGG
* *
26301106 TTTAGGGATTATGGTTTAAGGG
1 TTTAAGGATTATGGCTTAAGGG
26301128 T
1 T
26301129 GGTTTAAGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.20, C:0.02, G:0.33, T:0.44
Consensus pattern (22 bp):
TTTAAGGATTATGGCTTAAGGG
Found at i:26301185 original size:22 final size:22
Alignment explanation
Indices: 26301142--26301214 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
26301132 TTAAGGGTTG
* *
26301142 GGGTTTAAGGTTTAGGTG-TTA
1 GGGTTTAAGGGTTAGGAGTTTA
*
26301163 GGGTTTAAGGGTTAGGGGTTTA
1 GGGTTTAAGGGTTAGGAGTTTA
26301185 GGGTTT-AGGGATTAGGAGTTTA
1 GGGTTTAAGGG-TTAGGAGTTTA
*
26301207 GGGCTTAA
1 GGGTTTAA
26301215 TTAATTAGTG
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.44
22 24 0.53
23 1 0.02
ACGTcount: A:0.21, C:0.01, G:0.41, T:0.37
Consensus pattern (22 bp):
GGGTTTAAGGGTTAGGAGTTTA
Found at i:26301192 original size:7 final size:7
Alignment explanation
Indices: 26301129--26301209 Score: 69
Period size: 7 Copynumber: 11.3 Consensus size: 7
26301119 GTTTAAGGGT
26301129 GGTTTAAG
1 GGTTT-AG
*
26301137 GG-TTGG
1 GGTTTAG
*
26301143 GGTTTAA
1 GGTTTAG
26301150 GGTTTA-
1 GGTTTAG
26301156 GGTGTTAG
1 GGT-TTAG
26301164 GGTTTAAG
1 GGTTT-AG
26301172 GG-TTAGG
1 GGTTTA-G
26301179 GGTTTAG
1 GGTTTAG
26301186 GGTTTAG
1 GGTTTAG
*
26301193 GGATTAG
1 GGTTTAG
26301200 GAGTTTAG
1 G-GTTTAG
26301208 GG
1 GG
26301210 CTTAATTAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 15
0.75 0.06 0.19
Matches are distributed among these distances:
6 7 0.11
7 36 0.59
8 18 0.30
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (7 bp):
GGTTTAG
Found at i:26301205 original size:15 final size:14
Alignment explanation
Indices: 26301089--26301209 Score: 58
Period size: 14 Copynumber: 8.6 Consensus size: 14
26301079 ACTATTTTAA
* *
26301089 GGTTTATGGCTTATG
1 GGTTTAGGGATTA-G
*
26301104 GGTTTAGGGATTAT
1 GGTTTAGGGATTAG
26301118 GGTTTAAGGG--T--
1 GGTTT-AGGGATTAG
*
26301129 GGTTTAAGGG-TTGG
1 GGTTT-AGGGATTAG
* *
26301143 GGTTTAAGGTTTA-
1 GGTTTAGGGATTAG
*
26301156 GGTGTTAGGGTTTAAG
1 GGT-TTAGGGATT-AG
*
26301172 GG-TTAGGGGTTTAG
1 GGTTTA-GGGATTAG
26301186 GGTTTAGGGATTAG
1 GGTTTAGGGATTAG
26301200 GAGTTTAGGG
1 G-GTTTAGGG
26301210 CTTAATTAAT
Statistics
Matches: 88, Mismatches: 7, Indels: 22
0.75 0.06 0.19
Matches are distributed among these distances:
11 10 0.11
12 1 0.01
13 7 0.08
14 35 0.40
15 33 0.38
16 2 0.02
ACGTcount: A:0.18, C:0.01, G:0.42, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGATTAG
Found at i:26301380 original size:15 final size:15
Alignment explanation
Indices: 26301360--26301407 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
26301350 ACTATTTTAA
26301360 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
26301375 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
* *
26301389 GGTTTATGGTTTAAG
1 GGTTTATGGATTATG
26301404 GGTT
1 GGTT
26301408 GGGGTTTAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 11 0.39
15 17 0.61
ACGTcount: A:0.19, C:0.00, G:0.35, T:0.46
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:26301380 original size:22 final size:21
Alignment explanation
Indices: 26301355--26301404 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
26301345 GAGTTACTAT
*
26301355 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTATGGATTAT-GG
* *
26301377 TTTAGGGATTATGGTTTATGG
1 TTTAAGGATTATGGATTATGG
26301398 TTTAAGG
1 TTTAAGG
26301405 GTTGGGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (21 bp):
TTTAAGGATTATGGATTATGG
Found at i:26301641 original size:14 final size:15
Alignment explanation
Indices: 26301624--26301686 Score: 53
Period size: 14 Copynumber: 4.4 Consensus size: 15
26301614 TATATGATAG
26301624 GGTTT-TGAGTTTAA
1 GGTTTATGAGTTTAA
26301638 GGTTT-TGAGATTTAA
1 GGTTTATGAG-TTTAA
* *
26301653 AGTTTAT-AGTTTGA
1 GGTTTATGAGTTTAA
* *
26301667 GGTTTGTG-GTTTAG
1 GGTTTATGAGTTTAA
26301681 GGTTTA
1 GGTTTA
26301687 AAGAAGATCA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
14 27 0.69
15 11 0.28
16 1 0.03
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (15 bp):
GGTTTATGAGTTTAA
Found at i:26304526 original size:48 final size:48
Alignment explanation
Indices: 26304474--26304631 Score: 138
Period size: 48 Copynumber: 3.2 Consensus size: 48
26304464 TTTTGTGTAC
26304474 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG
1 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG
** ** * * * * * ** *
26304522 TTTTATTTTAAATATTTTATTTTAATTTAATT-ACGAAAAATATTTTGTCTAC
1 TTTTATTTT--AT-TTTTAAATT-ACCTAATTAAAGTAAATTGTATT-TAAAG
*
26304574 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAG
1 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG
*
26304622 ATTTATTTTA
1 TTTTATTTTA
26304632 AATATTTTAT
Statistics
Matches: 78, Mismatches: 26, Indels: 12
0.67 0.22 0.10
Matches are distributed among these distances:
48 26 0.33
49 15 0.19
50 4 0.05
51 16 0.21
52 17 0.22
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.55
Consensus pattern (48 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAG
Found at i:26304575 original size:100 final size:102
Alignment explanation
Indices: 26304371--26304811 Score: 628
Period size: 105 Copynumber: 4.4 Consensus size: 102
26304361 GCCGCTAAAG
26304371 TTTTATTTTA-TTTT-AATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
26304434 TATTTTATTTTATTTTAATCACGAAAAATATTTTGTGTAC
66 TATTTTA---TATTTTAATCACGAAAAATATTTTGTCTAC
*
26304474 TTTTATTTTATTTTTAAATTACCTAATTAAAGTAAATTGTATTTAAAGTTTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
*
26304539 TATTTTA-A-TTTAATTACGAAAAATATTTTGTCTAC
66 TATTTTATATTTTAATCACGAAAAATATTTTGTCTAC
*
26304574 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGATTTATTTTAAATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
* **
26304639 TATTTTATTTTATTTTAATCGCGAAAAATAAGTTGTCTAC
66 TATTTTA---TATTTTAATCACGAAAAATATTTTGTCTAC
*
26304679 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTATATTT-AA-----A--TT--ATATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
26304734 TATTTTA-A-TTTAATCACGAAAAATATTTTGTCTAC
66 TATTTTATATTTTAATCACGAAAAATATTTTGTCTAC
*
26304769 TTTTATTTTATTTTTAAATTACCTAATTAAATTACA-TGTATTT
1 TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTT
26304812 TTAAATATTG
Statistics
Matches: 316, Mismatches: 15, Indels: 28
0.88 0.04 0.08
Matches are distributed among these distances:
89 6 0.02
90 59 0.19
91 1 0.00
95 13 0.04
97 2 0.01
99 1 0.00
100 95 0.30
101 1 0.00
103 10 0.03
104 7 0.02
105 121 0.38
ACGTcount: A:0.35, C:0.06, G:0.04, T:0.55
Consensus pattern (102 bp):
TTTTATTTTATTTTTAAATTACCTAATTAAATTAAATTGTATTTAAAGTTTTATTTTAAATATTT
TATTTTATATTTTAATCACGAAAAATATTTTGTCTAC
Found at i:26304726 original size:16 final size:16
Alignment explanation
Indices: 26304705--26304743 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
26304695 AATTACCTAA
26304705 TTAAATTAAATTATAT
1 TTAAATTAAATTATAT
* *
26304721 TTAAATTATATTTTAT
1 TTAAATTAAATTATAT
*
26304737 TTTAATT
1 TTAAATT
26304744 TAATCACGAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTAAATTAAATTATAT
Found at i:26304746 original size:90 final size:91
Alignment explanation
Indices: 26304639--26304817 Score: 297
Period size: 90 Copynumber: 2.0 Consensus size: 91
26304629 TTAAATATTT
* *
26304639 TATTTTATTTTATTTTAATCGCGAAAAATAAGTTGTCTACTTTTATTTTATTTTTAAATTACCTA
1 TATTTTATTTTAATTTAATCACGAAAAATAAGTTGTCTACTTTTATTTTATTTTTAAATTACCTA
26304704 ATTAAATTAAAT-TATATTTAAATTA
66 ATTAAATTAAATGTATATTTAAATTA
**
26304729 TATTTTATTTTAATTTAATCACGAAAAATATTTTGTCTACTTTTATTTTATTTTTAAATTACCTA
1 TATTTTATTTTAATTTAATCACGAAAAATAAGTTGTCTACTTTTATTTTATTTTTAAATTACCTA
* *
26304794 ATTAAATTACATGTATTTTTAAAT
66 ATTAAATTAAATGTATATTTAAAT
26304818 ATTGTTCAAA
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
90 72 0.88
91 10 0.12
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (91 bp):
TATTTTATTTTAATTTAATCACGAAAAATAAGTTGTCTACTTTTATTTTATTTTTAAATTACCTA
ATTAAATTAAATGTATATTTAAATTA
Found at i:26305090 original size:9 final size:9
Alignment explanation
Indices: 26305084--26305202 Score: 100
Period size: 9 Copynumber: 13.0 Consensus size: 9
26305074 ATATCATATC
26305084 TTACATAAT
1 TTACATAAT
*
26305093 TTATATAAT
1 TTACATAAT
26305102 TTACATAAT
1 TTACATAAT
*
26305111 TTACATAAC
1 TTACATAAT
26305120 TTACATAA-
1 TTACATAAT
26305128 -TACATAAAT
1 TTACAT-AAT
26305137 ATATATCAT-AT
1 -T-TA-CATAAT
26305148 CTTACATAAT
1 -TTACATAAT
*
26305158 TTACATAAG
1 TTACATAAT
* * * *
26305167 ATAAACAAC
1 TTACATAAT
26305176 TTACATAAT
1 TTACATAAT
*
26305185 TTACATAAC
1 TTACATAAT
26305194 TTACATAAT
1 TTACATAAT
26305203 ACATAAATAT
Statistics
Matches: 88, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
7 5 0.06
8 2 0.02
9 69 0.78
10 4 0.05
11 3 0.03
12 2 0.02
13 3 0.03
ACGTcount: A:0.47, C:0.13, G:0.01, T:0.39
Consensus pattern (9 bp):
TTACATAAT
Found at i:26305153 original size:65 final size:68
Alignment explanation
Indices: 26305064--26305222 Score: 234
Period size: 74 Copynumber: 2.3 Consensus size: 68
26305054 AATCCCATCA
*
26305064 ACATAAATATATATCATATCTTACATAATTT-AT-AT-AATTTACATAATTTACATAACTTACAT
1 ACATAAATATATATCATATCTTACATAATTTAATAATAAACTTACATAATTTACATAACTTACAT
26305126 AAT
66 AAT
26305129 ACATAAATATATATCATATCTTACATAATTTACATAAGATAAACAACTTACATAATTTACATAAC
1 ACATAAATATATATCATATCTTACATAATTTA-AT-A-AT--A-AACTTACATAATTTACATAAC
26305194 TTACATAAT
60 TTACATAAT
26305203 ACATAAATATATATCATATC
1 ACATAAATATATATCATATC
26305223 ATAACTTACA
Statistics
Matches: 84, Mismatches: 1, Indels: 9
0.89 0.01 0.10
Matches are distributed among these distances:
65 31 0.37
67 2 0.02
70 2 0.02
74 49 0.58
ACGTcount: A:0.48, C:0.14, G:0.01, T:0.38
Consensus pattern (68 bp):
ACATAAATATATATCATATCTTACATAATTTAATAATAAACTTACATAATTTACATAACTTACAT
AAT
Found at i:26309156 original size:40 final size:40
Alignment explanation
Indices: 26309093--26309296 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
26309083 CGGAATTTAA
* ** * *
26309093 CCGGATATAGCAACTCGTTCAAATGCCTTTGGGACATAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26309133 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26309173 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26309212 CCGGA-ATTAGTAACTCGCACAAATGCCTT-TGGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
26309252 CCGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26309292 CCGGA
1 CCGGA
26309297 CATCATTCGA
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 31 0.22
40 94 0.68
41 12 0.09
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26309214 original size:79 final size:79
Alignment explanation
Indices: 26309079--26309296 Score: 228
Period size: 79 Copynumber: 2.7 Consensus size: 79
26309069 GAATCACGTA
* * * ** * * * *
26309079 CCTTCGGAATTTAACCGGATATAGCAACTCGTTCAAATGCCTTTGGGACATAGCCCGG-TTATAG
1 CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAAT-TAG
26309143 TAACTCGCACAAATG
65 TAACTCGCACAAATG
*
26309158 CCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAATTAG
1 CCTTCGGGACTTAA-CCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATTAG
26309222 TAACTCGCACAAATG
65 TAACTCGCACAAATG
* * * * *
26309237 CCTT-TGGATCTTAGTCCGGATATAGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTA-ACCGGATATAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCCCGGA
26309297 CATCATTCGA
Statistics
Matches: 117, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 43 0.37
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CCTTCGGGACTTAACCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACTCGCACAAATG
Found at i:26313586 original size:13 final size:14
Alignment explanation
Indices: 26313570--26313598 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
26313560 TTATAAATAT
26313570 TTATAATG-TTTAA
1 TTATAATGATTTAA
26313583 TTATAATGATTTAA
1 TTATAATGATTTAA
26313597 TT
1 TT
26313599 CGTCGTTAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (14 bp):
TTATAATGATTTAA
Found at i:26314899 original size:183 final size:183
Alignment explanation
Indices: 26314591--26314956 Score: 732
Period size: 183 Copynumber: 2.0 Consensus size: 183
26314581 TTTTTATTGT
26314591 GCATATGATTAGTAGGGAAGCAAGCGTTTAGGCCTTATAAATATGTTTGGTGGAAATTCGACACA
1 GCATATGATTAGTAGGGAAGCAAGCGTTTAGGCCTTATAAATATGTTTGGTGGAAATTCGACACA
26314656 AAAGATGTGCTTGGCCCAGTGGTATGATGGCGTTAGGAGTAACGAGAGGTGCTAGGTTCAAGTCG
66 AAAGATGTGCTTGGCCCAGTGGTATGATGGCGTTAGGAGTAACGAGAGGTGCTAGGTTCAAGTCG
26314721 CGGCATGAGAAAAAGTTGTGGGTTTTTTTTTAGACAACCTGGAGGTCGGCAGA
131 CGGCATGAGAAAAAGTTGTGGGTTTTTTTTTAGACAACCTGGAGGTCGGCAGA
26314774 GCATATGATTAGTAGGGAAGCAAGCGTTTAGGCCTTATAAATATGTTTGGTGGAAATTCGACACA
1 GCATATGATTAGTAGGGAAGCAAGCGTTTAGGCCTTATAAATATGTTTGGTGGAAATTCGACACA
26314839 AAAGATGTGCTTGGCCCAGTGGTATGATGGCGTTAGGAGTAACGAGAGGTGCTAGGTTCAAGTCG
66 AAAGATGTGCTTGGCCCAGTGGTATGATGGCGTTAGGAGTAACGAGAGGTGCTAGGTTCAAGTCG
26314904 CGGCATGAGAAAAAGTTGTGGGTTTTTTTTTAGACAACCTGGAGGTCGGCAGA
131 CGGCATGAGAAAAAGTTGTGGGTTTTTTTTTAGACAACCTGGAGGTCGGCAGA
26314957 AAGACTTTAT
Statistics
Matches: 183, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
183 183 1.00
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.27
Consensus pattern (183 bp):
GCATATGATTAGTAGGGAAGCAAGCGTTTAGGCCTTATAAATATGTTTGGTGGAAATTCGACACA
AAAGATGTGCTTGGCCCAGTGGTATGATGGCGTTAGGAGTAACGAGAGGTGCTAGGTTCAAGTCG
CGGCATGAGAAAAAGTTGTGGGTTTTTTTTTAGACAACCTGGAGGTCGGCAGA
Found at i:26316321 original size:29 final size:28
Alignment explanation
Indices: 26316275--26316350 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 28
26316265 GAATGTAAAA
*
26316275 GTGATTGGGCATAGTGGGCCATAT-AGAT
1 GTGATTGGGCCTAGTGGGCCATATGA-AT
*
26316303 GTGATTTGGGCCTAATGGGCCATATGAAT
1 GTGA-TTGGGCCTAGTGGGCCATATGAAT
*
26316332 GAGATTGGGCCTAGTGGGC
1 GTGATTGGGCCTAGTGGGC
26316351 TATAAGCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
28 18 0.43
29 23 0.55
30 1 0.02
ACGTcount: A:0.22, C:0.13, G:0.37, T:0.28
Consensus pattern (28 bp):
GTGATTGGGCCTAGTGGGCCATATGAAT
Found at i:26323135 original size:47 final size:49
Alignment explanation
Indices: 26323018--26323147 Score: 160
Period size: 47 Copynumber: 2.7 Consensus size: 49
26323008 GGAGATGTGA
* * *
26323018 GAGCCAATGTAAGACCATGTCTGGGACATGGC-GTGAGCCTCGATTTCGAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGA-CCTCGA-TTCGAT
* * *
26323068 -AGTCAGTGTAAGACCATGTTTGGGACATGGCATTGA-CTTG-TTGGAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGACCTCGATTCGAT
26323114 GAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCAT
26323148 CGGCATTACA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
46 5 0.07
47 32 0.45
48 3 0.04
49 28 0.39
50 3 0.04
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (49 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGACCTCGATTCGAT
Found at i:26328882 original size:34 final size:34
Alignment explanation
Indices: 26328839--26328905 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
26328829 GTGATTCGTG
* *
26328839 ATTGTCTAAAGGCTACTTTAGATAGACAAAAATA
1 ATTGTCTAAAGGCCACTTCAGATAGACAAAAATA
*
26328873 ATTGTCTAAAGGCCGCTTCAGATAGACAAAAAT
1 ATTGTCTAAAGGCCACTTCAGATAGACAAAAAT
26328906 CCTATGCGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (34 bp):
ATTGTCTAAAGGCCACTTCAGATAGACAAAAATA
Found at i:26330769 original size:40 final size:39
Alignment explanation
Indices: 26330724--26330803 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 39
26330714 ATGTTTGGGA
26330724 CATGCATCAGCT-TCGAGATGTAAGCCAGTGTAAGA-CATGT
1 CATGCATCAGCTAT-GAGATGT-A-CCAGTGTAAGACCATGT
* *
26330764 CATGCATCGGCTATGAGATGTATCAGTGTAAGACCATGT
1 CATGCATCAGCTATGAGATGTACCAGTGTAAGACCATGT
26330803 C
1 C
26330804 TGGGACATGG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
38 10 0.28
39 7 0.19
40 18 0.50
41 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.26
Consensus pattern (39 bp):
CATGCATCAGCTATGAGATGTACCAGTGTAAGACCATGT
Found at i:26330820 original size:46 final size:48
Alignment explanation
Indices: 26330787--26330959 Score: 122
Period size: 49 Copynumber: 3.6 Consensus size: 48
26330777 TGAGATGTAT
26330787 CAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGGAGATGTGAGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGGAGATGT--GAGC
* * ** * ** * *
26330837 CATTGTAAGACCATGTCTGGGACACGGTGTCTGC-CTCA-ATTTCGATAGT
1 CAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGGAGATGT-G--AGC
* * * * *
26330886 CAGTATAAGACCATGTCTAGGACATGGCATC-G-ACTG-GTTGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGGAGAT-G-TGAGC
26330933 CAGTGTAAGACCATGTCTGGGACATGG
1 CAGTGTAAGACCATGTCTGGGACATGG
26330960 CATCAGCATT
Statistics
Matches: 95, Mismatches: 22, Indels: 15
0.72 0.17 0.11
Matches are distributed among these distances:
47 28 0.29
48 7 0.07
49 30 0.32
50 30 0.32
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGGAGATGTGAGC
Found at i:26330956 original size:47 final size:48
Alignment explanation
Indices: 26330787--26330963 Score: 153
Period size: 47 Copynumber: 3.6 Consensus size: 48
26330777 TGAGATGTAT
* * *
26330787 CAGTGTAAGACCATGTCTGGGACATGGAATCGGCACGGAGATGTGA-GAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACTG-GTTG-GATGAGC
* * ** * * ** * *
26330837 CATTGTAAGACCATGTCTGGGACACGGTGTCTGCCTCAATTTCGAT-AGT
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGACT--GGTTGGATGAGC
* *
26330886 CAGTATAAGACCATGTCTAGGACATGGCATC-GACTGGTTGGATGAGC
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGGACTGGTTGGATGAGC
26330933 CAGTGTAAGACCATGTCTGGGACATGGCATC
1 CAGTGTAAGACCATGTCTGGGACATGGCATC
26330964 AGCATTACAC
Statistics
Matches: 98, Mismatches: 25, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
46 5 0.05
47 31 0.32
48 3 0.03
49 30 0.31
50 29 0.30
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGACTGGTTGGATGAGC
Found at i:26333707 original size:27 final size:27
Alignment explanation
Indices: 26333677--26333853 Score: 113
Period size: 27 Copynumber: 6.5 Consensus size: 27
26333667 ATATTGAGCC
* * * *
26333677 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCCACACAATCAAAT
**
26333704 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
26333731 CGCACACTTAGTGCCACATAGTCCATCT
1 CGCACACTTAGTGCCACACAAT-CAAAT
* *** *
26333759 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACACAATCAAAT
* * **
26333786 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CACAATCAAAT
* * * *
26333813 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCACACAATCAAAT
*
26333840 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
26333854 TGTACAATTT
Statistics
Matches: 122, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 24 0.20
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCCACACAATCAAAT
Found at i:26333769 original size:55 final size:55
Alignment explanation
Indices: 26333677--26333853 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
26333667 ATATTGAGCC
* * * * *
26333677 CGCACACTCAGTGCTATACA-AT-CAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
26333731 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
26333786 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
26333840 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
26333854 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.55
55 43 0.42
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26333816 original size:82 final size:81
Alignment explanation
Indices: 26333698--26333853 Score: 197
Period size: 82 Copynumber: 1.9 Consensus size: 81
26333688 TGCTATACAA
* * * **
26333698 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCA
26333763 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26333780 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCA
*
26333844 CCCTTAGTGC
65 CACTTAGTGC
26333854 TGTACAATTT
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.29
82 45 0.71
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26335865 original size:40 final size:40
Alignment explanation
Indices: 26335835--26336044 Score: 305
Period size: 40 Copynumber: 5.3 Consensus size: 40
26335825 GGACTAAGAT
* * * *
26335835 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
26335875 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGTTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
26335915 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
26335955 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
26335995 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
26336034 CCGAAGGCATT
1 CCGAAGGCATT
26336045 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 13, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 34 0.22
40 123 0.78
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:26335919 original size:80 final size:80
Alignment explanation
Indices: 26335782--26336044 Score: 307
Period size: 80 Copynumber: 3.3 Consensus size: 80
26335772 TTGAATGCTG
* * * * * *
26335782 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGATTAAG-TCCCGAAGGCCT
*
26335845 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * * *
26335862 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGTTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGTCCCGAAGGCCTTT
*
26335927 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * * *
26335942 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGTCCCGAAGGCCTTT
*
26336006 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
26336021 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26336045 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 116 0.73
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGATTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:26336064 original size:79 final size:80
Alignment explanation
Indices: 26335835--26336079 Score: 244
Period size: 80 Copynumber: 3.1 Consensus size: 80
26335825 GGACTAAGAT
* * * * * ** * *
26335835 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
*
26335899 AAATCCGGTTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
26335915 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
26335980 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
26335995 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
26336059 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
26336073 CCGAAGG
1 CCGAAGG
26336080 TACGTGATTT
Statistics
Matches: 143, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 82 0.57
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:26344898 original size:27 final size:27
Alignment explanation
Indices: 26344868--26345018 Score: 160
Period size: 27 Copynumber: 5.6 Consensus size: 27
26344858 TACAACCAAC
* *
26344868 TCGCACACTTAGTGCCACGTAATCAAA
1 TCGCACACTTAGTGCCACATAGTCAAA
**
26344895 TCGCACACTTAGTGCCACATAGTCCATC
1 TCGCACACTTAGTGCCACATAGT-CAAA
* * *
26344923 TCGCACACTTAGTGCCGCATGGTCAAT
1 TCGCACACTTAGTGCCACATAGTCAAA
* **
26344950 TCGCACACTTAGTG-CATCATATTCATT
1 TCGCACACTTAGTGCCA-CATAGTCAAA
* *
26344977 TCGCACACTGAGTGCAACATAGTCAAA
1 TCGCACACTTAGTGCCACATAGTCAAA
*
26345004 TCGCACCCTTAGTGC
1 TCGCACACTTAGTGC
26345019 TGTACAATTT
Statistics
Matches: 102, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 1 0.01
27 77 0.75
28 24 0.24
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (27 bp):
TCGCACACTTAGTGCCACATAGTCAAA
Found at i:26344934 original size:55 final size:55
Alignment explanation
Indices: 26344842--26345018 Score: 191
Period size: 54 Copynumber: 3.3 Consensus size: 55
26344832 ATATTGAGCC
* * * * *
26344842 CGCACACTCAGTGCTATACA-A-CCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCCAT-CATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * *
26344896 CGCACACTTAGTGCCA-CATAGTCCATCTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCATCATA-TCCATCTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
26344951 CGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
*
26345005 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
26345019 TGTACAATTT
Statistics
Matches: 102, Mismatches: 16, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 55 0.54
55 44 0.43
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (55 bp):
CGCACACTTAGTGCCATCATATCCATCTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:26344981 original size:82 final size:81
Alignment explanation
Indices: 26344868--26345018 Score: 196
Period size: 82 Copynumber: 1.9 Consensus size: 81
26344858 TACAACCAAC
* * * **
26344868 TCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCCACATAGTCCATCTCGCACACTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGT-CAAATCGCACACTT
26344933 AGTGCCGCATGGTCAAT
65 AGTGCCGCATGGTCAAT
* ** *
26344950 TCGCACACTTAGTG-CATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAATCGCACCCTT
1 TCGCACACTTAGTGCCA-CATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCACACTT
26345014 AGTGC
65 AGTGC
26345019 TGTACAATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
81 18 0.31
82 41 0.69
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (81 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTGAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCAAT
Found at i:26351700 original size:28 final size:27
Alignment explanation
Indices: 26351642--26351701 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 27
26351632 TATTCAGTAT
*
26351642 CAGTACAGTCTGGGCCTTAGCCCTTAAA
1 CAGTACAGTCTGGGCCTAAGCCC-TAAA
*
26351670 CAGTAGCAGTGTGGGCCTAAGCCC-AATA
1 CAGTA-CAGTCTGGGCCTAAGCCCTAA-A
26351698 CAGT
1 CAGT
26351702 TTCAGTATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 2 0.07
28 10 0.36
29 16 0.57
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.22
Consensus pattern (27 bp):
CAGTACAGTCTGGGCCTAAGCCCTAAA
Found at i:26352257 original size:27 final size:27
Alignment explanation
Indices: 26352199--26352538 Score: 233
Period size: 27 Copynumber: 12.6 Consensus size: 27
26352189 GCAAACTGAT
**
26352199 GGTATTTCTGTAATTTTTGAAAGTCAAG
1 GGTATTTCTGTAATTTTACAAA-TCAAG
**
26352227 GGTATTTCTGTAATTTTGTAAATC-AG
1 GGTATTTCTGTAATTTTACAAATCAAG
* *
26352253 TGGTATTTCTATAATTTTCCAAATCAAG
1 -GGTATTTCTGTAATTTTACAAATCAAG
* * * *
26352281 GGTATTTCAGTAACTTT-CTAAATTAGG
1 GGTATTTCTGTAATTTTAC-AAATCAAG
* *
26352308 GGTATTTCTGTAATTTTACAAGTCGAG
1 GGTATTTCTGTAATTTTACAAATCAAG
* * *
26352335 GGTATTTCAGTAATTTTACAAGTCGAG
1 GGTATTTCTGTAATTTTACAAATCAAG
* ** *
26352362 GGTATTTCAGTAATTTTACAGGTCGAG
1 GGTATTTCTGTAATTTTACAAATCAAG
** * * * * *
26352389 GACATTCCGGTAATTTCATAAATCAGG
1 GGTATTTCTGTAATTTTACAAATCAAG
* *
26352416 GGTATTT-TGGTAATTTCACAAATCAGG
1 GGTATTTCT-GTAATTTTACAAATCAAG
** *
26352443 GGTATTT-TGGTAATTTTACAACCCAGG
1 GGTATTTCT-GTAATTTTACAAATCAAG
* * *
26352470 GGTATTT-TGGTAATTTTGCTAATCGAG
1 GGTATTTCT-GTAATTTTACAAATCAAG
** *
26352497 GGTATTT-TGGTAATTTTGTAAACCAAG
1 GGTATTTCT-GTAATTTTACAAATCAAG
*
26352524 GGTATTTCAGTAATT
1 GGTATTTCTGTAATT
26352539 CTACCCTACA
Statistics
Matches: 259, Mismatches: 47, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.01
27 233 0.90
28 23 0.09
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTATTTCTGTAATTTTACAAATCAAG
Found at i:26352557 original size:27 final size:27
Alignment explanation
Indices: 26352527--26352630 Score: 145
Period size: 27 Copynumber: 3.9 Consensus size: 27
26352517 AACCAAGGGT
26352527 ATTTCAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
26352554 ATTTCAGTAATTCTATCCTAGAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* * *
26352581 ATTTTAGTAATTCTACGCTACAGGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
26352608 ATTTCAGTAATACTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAG
26352631 ATATGAGATT
Statistics
Matches: 66, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:26353931 original size:43 final size:43
Alignment explanation
Indices: 26353873--26353959 Score: 129
Period size: 43 Copynumber: 2.0 Consensus size: 43
26353863 TGAAGTATGT
* * *
26353873 AGCATCCGAGCTCGTTGTGAGGTCTGAGTTCATTATAGATGCG
1 AGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATAGATGCG
* *
26353916 AGCATCCGAGCTCGTTGAGTGGTCCGAGTTCATGATGGATGCG
1 AGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATAGATGCG
26353959 A
1 A
26353960 TTCATGTAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.21, C:0.20, G:0.32, T:0.28
Consensus pattern (43 bp):
AGCATCCGAGCTCGTTGAGAGGTCCGAGTTCATGATAGATGCG
Found at i:26359376 original size:40 final size:40
Alignment explanation
Indices: 26359314--26359517 Score: 315
Period size: 40 Copynumber: 5.1 Consensus size: 40
26359304 AAACCAAGTA
* * *
26359314 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
26359353 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26359393 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26359433 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26359473 CCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26359513 CCTTC
1 CCTTC
26359518 ATTGTCATCC
Statistics
Matches: 155, Mismatches: 7, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.09
40 141 0.91
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26377369 original size:40 final size:40
Alignment explanation
Indices: 26377307--26377451 Score: 137
Period size: 40 Copynumber: 3.6 Consensus size: 40
26377297 TGACGACAAA
* * *
26377307 TCGGTTATATGTGGTACTTAGTGTGCGATACAACATAGCG
1 TCGGCTATATATGGCACTTAGTGTGCGATACAACATAGCG
* * * **
26377347 TCGGCTGTATATGGCACTTAGTGTGCGATTCGACATAGTT
1 TCGGCTATATATGGCACTTAGTGTGCGATACAACATAGCG
* * ** * *
26377387 TCGTCTATATATGGCACTTAGTGTGTGATTTAAGATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATACAACATAGCG
* * *
26377427 TCGGCTATGTACGACACTTAGTGTG
1 TCGGCTATATATGGCACTTAGTGTG
26377452 TGAGATATTG
Statistics
Matches: 86, Mismatches: 19, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATACAACATAGCG
Found at i:26379710 original size:96 final size:96
Alignment explanation
Indices: 26379506--26379779 Score: 267
Period size: 96 Copynumber: 2.9 Consensus size: 96
26379496 AGGTTAGGAT
* * *
26379506 ACCGATGCTATGCCCTAGACATGGTCTTACATTGGCTCAT-AC--ATCAAGTCGATGTCATGTCC
1 ACCGATGCCATGTCCTAGACATGGTCTTACATTGGCTC-TCACATATCAAGT-GATGCCATGTCC
* * *
26379568 CAGACATGCTCTTACACTGACTATCGCAATCGAG
64 CAGACATGGTCTTACACTAACCATCGCAATC-AG
* * *
26379602 ACCGACGTCATGTCCTAGACATGGTCTTACATTGGCTCTCACATATCTATGTAGATGCCATGTCC
1 ACCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCACATATC-AAGT-GATGCCATGTCC
*
26379667 CAGACATGGTCTTACACTAACACATCTC-AT-AG
64 CAGACATGGTCTTACACTAAC-CATCGCAATCAG
* * * * * *
26379699 -CTGATGCCATGTCCCAGACATGGTCTTACACTGG--CTCACATCTCGAGGCTGATGCCATGTCT
1 ACCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCACATATC-AAG-TGATGCCATGTCC
*
26379761 TAGACATGGTCTTACACTA
64 CAGACATGGTCTTACACTA
26379780 GTACGCATGT
Statistics
Matches: 151, Mismatches: 21, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
94 40 0.26
95 2 0.01
96 65 0.43
97 2 0.01
98 3 0.02
99 35 0.23
100 4 0.03
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (96 bp):
ACCGATGCCATGTCCTAGACATGGTCTTACATTGGCTCTCACATATCAAGTGATGCCATGTCCCA
GACATGGTCTTACACTAACCATCGCAATCAG
Found at i:26379758 original size:48 final size:48
Alignment explanation
Indices: 26379509--26379778 Score: 196
Period size: 48 Copynumber: 5.6 Consensus size: 48
26379499 TTAGGATACC
* * * * *
26379509 GATGCTATG-CCCTAGACATGGTCTTACATTGGCTCATA-CATCAAGTC-
1 GATGCCATGTCCC-AGACATGGTCTTACACTGGCTCACATC-TCGAGGCT
* * * * * * *
26379556 GATGTCATGTCCCAGACATGCTCTTACACTGACTATCGCA-ATCGAGACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC--TCACATCTCGAGGCT
* * * * * * *
26379605 GACGTCATGTCCTAGACATGGTCTTACATTGGCTCTCACATATCTATG-T
1 GATGCCATGTCCCAGACATGGTCTTACACTGG--CTCACATCTCGAGGCT
** *
26379654 AGATGCCATGTCCCAGACATGGTCTTACACT--AACACATCTC-ATAGCT
1 -GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGA-GGCT
26379701 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGCT
**
26379749 GATGCCATGTCTTAGACATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
26379779 AGTACGCATG
Statistics
Matches: 177, Mismatches: 33, Indels: 25
0.75 0.14 0.11
Matches are distributed among these distances:
45 1 0.01
46 38 0.21
47 25 0.14
48 47 0.27
49 35 0.20
50 30 0.17
51 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATCTCGAGGCT
Found at i:26388211 original size:40 final size:40
Alignment explanation
Indices: 26388146--26388362 Score: 210
Period size: 40 Copynumber: 5.4 Consensus size: 40
26388136 GGGTTATTTG
* * *
26388146 TGGCACTTAGTGTGTGA-TACAACATAGATTCGACTATATA
1 TGGCACTTAGTGTGCGATTA-GACATAGCTTCGACTATATA
26388186 TGGCACTTAGTGTGCGATTAGACATAGCTTC-AGCTATATA
1 TGGCACTTAGTGTGCGATTAGACATAGCTTCGA-CTATATA
* * * * * *
26388226 TGGCAATTAGTGTGTGATTTGAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGATTAGACATAGCTTCGACTATATA
* *
26388266 CGGCACTTAGTATGCGATTCA-ACATAGCTTC-AGCTATATA
1 TGGCACTTAGTGTGCGATT-AGACATAGCTTCGA-CTATATA
* * * *
26388306 TGGCACTTAGTGTGTGATCT-GAGATAGCTTCGGCTATGTA
1 TGGCACTTAGTGTGCGAT-TAGACATAGCTTCGACTATATA
*
26388346 CGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGCGA
26388363 GATATCGAGT
Statistics
Matches: 144, Mismatches: 25, Indels: 16
0.78 0.14 0.09
Matches are distributed among these distances:
39 1 0.01
40 140 0.97
41 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTAGACATAGCTTCGACTATATA
Found at i:26388236 original size:80 final size:79
Alignment explanation
Indices: 26388146--26388362 Score: 310
Period size: 80 Copynumber: 2.7 Consensus size: 79
26388136 GGGTTATTTG
* * * * * *
26388146 TGGCACTTAGTGTGTGATACAACATAGATTCGACTATATATGGCACTTAGTGTGCGATT-AGACA
1 TGGCACTTAGTGTGTGAT-CGAGATAGCTTCGGCTATGTACGGCACTTAGTGTGCGATTCA-ACA
26388210 TAGCTTCAGCTATATA
64 TAGCTTCAGCTATATA
* * *
26388226 TGGCAATTAGTGTGTGATTTGAGATAGCTTCGGCTATGTACGGCACTTAGTATGCGATTCAACAT
1 TGGCACTTAGTGTGTGA-TCGAGATAGCTTCGGCTATGTACGGCACTTAGTGTGCGATTCAACAT
26388291 AGCTTCAGCTATATA
65 AGCTTCAGCTATATA
26388306 TGGCACTTAGTGTGTGATCTGAGATAGCTTCGGCTATGTACGGCACTTAGTGTGCGA
1 TGGCACTTAGTGTGTGATC-GAGATAGCTTCGGCTATGTACGGCACTTAGTGTGCGA
26388363 GATATCGAGT
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
79 1 0.01
80 119 0.98
81 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (79 bp):
TGGCACTTAGTGTGTGATCGAGATAGCTTCGGCTATGTACGGCACTTAGTGTGCGATTCAACATA
GCTTCAGCTATATA
Found at i:26390964 original size:28 final size:28
Alignment explanation
Indices: 26390928--26390983 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
26390918 TTAATTATAA
26390928 CATACAAAACTTATATTTATAAATAATT
1 CATACAAAACTTATATTTATAAATAATT
*
26390956 CATATAAAACTTATATTTATAAATAATT
1 CATACAAAACTTATATTTATAAATAATT
26390984 TATCTCTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (28 bp):
CATACAAAACTTATATTTATAAATAATT
Found at i:26396088 original size:21 final size:22
Alignment explanation
Indices: 26396064--26396107 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26396054 AAAATCTTTC
26396064 AAACCCTTT-TACTTTCTAAAA
1 AAACCCTTTCTACTTTCTAAAA
* *
26396085 AAACCCTTTCTCCTTTTTAAAA
1 AAACCCTTTCTACTTTCTAAAA
26396107 A
1 A
26396108 TTTCATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
AAACCCTTTCTACTTTCTAAAA
Found at i:26396204 original size:22 final size:22
Alignment explanation
Indices: 26396176--26396220 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26396166 GACTTGTTTA
* *
26396176 TTGTTTGATTGATGAGATAATT
1 TTGTTTGATTCATGAGAAAATT
*
26396198 TTGTTTGGTTCATGAGAAAATT
1 TTGTTTGATTCATGAGAAAATT
26396220 T
1 T
26396221 GGGATAGTTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.27, C:0.02, G:0.22, T:0.49
Consensus pattern (22 bp):
TTGTTTGATTCATGAGAAAATT
Found at i:26396329 original size:19 final size:18
Alignment explanation
Indices: 26396295--26396342 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
26396285 TACTTTTTAT
*
26396295 TTTTATGATTCTT-ATATA
1 TTTTAT-ATTTTTAATATA
26396313 -TTTATATTTTTAATATA
1 TTTTATATTTTTAATATA
*
26396330 TTTTTTATTTTTA
1 TTTTATATTTTTA
26396343 TAAAATACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 5 0.19
17 10 0.38
18 11 0.42
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTTATATTTTTAATATA
Found at i:26396666 original size:29 final size:29
Alignment explanation
Indices: 26396623--26396684 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
26396613 AAACTTGATT
* *
26396623 AGTTGGGTGGCCATTTTGAAAATTTTAAA
1 AGTTGGGTGACCATTTTAAAAATTTTAAA
*
26396652 AGTTGGGTGATCATTTTAAAAATTTTAAA
1 AGTTGGGTGACCATTTTAAAAATTTTAAA
26396681 AGTT
1 AGTT
26396685 TAGTGGCCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.21, T:0.40
Consensus pattern (29 bp):
AGTTGGGTGACCATTTTAAAAATTTTAAA
Found at i:26399508 original size:53 final size:54
Alignment explanation
Indices: 26399435--26399604 Score: 180
Period size: 55 Copynumber: 3.1 Consensus size: 54
26399425 CATACCATTT
* * * * *
26399435 CCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCATTG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATG
* * ** *
26399488 CCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAGTAGTTTATCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAG-AACTTACCAATG
* * * * * *
26399543 CCATGTCTTAGCATGGTCTTACATGATTTCCTTTCCTTGTAGAACTTACCAATG
1 CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATG
26399597 CCATGCCT
1 CCATGCCT
26399605 ATGTCATGCC
Statistics
Matches: 93, Mismatches: 22, Indels: 3
0.79 0.19 0.03
Matches are distributed among these distances:
53 35 0.38
54 17 0.18
55 41 0.44
ACGTcount: A:0.20, C:0.25, G:0.18, T:0.37
Consensus pattern (54 bp):
CCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAACTTACCAATG
Found at i:26401014 original size:13 final size:13
Alignment explanation
Indices: 26400993--26401026 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
26400983 ACTGACTTGG
26400993 GCCACACGGCCAA
1 GCCACACGGCCAA
*
26401006 GCCATACGGCCAA
1 GCCACACGGCCAA
26401019 GCCACACG
1 GCCACACG
26401027 CCCATATGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.44, G:0.24, T:0.03
Consensus pattern (13 bp):
GCCACACGGCCAA
Found at i:26402145 original size:30 final size:31
Alignment explanation
Indices: 26402095--26402153 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
26402085 ATCAAGTTCC
*
26402095 ATATACATGTATCATCCATTT-CATATATCT
1 ATATACATGTAACATCCATTTCCATATATCT
26402125 ATATATCATGTAACAT-CATTTCCATATAT
1 ATATA-CATGTAACATCCATTTCCATATAT
26402154 TTCATGTGTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.36, C:0.19, G:0.03, T:0.42
Consensus pattern (31 bp):
ATATACATGTAACATCCATTTCCATATATCT
Found at i:26402863 original size:43 final size:43
Alignment explanation
Indices: 26402801--26402894 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
26402791 TGTGACATAG
* * *
26402801 CCCAGACCGTGTGGCCATTCAAAGTTGGGACACATGGCTGTGT
1 CCCAGACCATGTGGCCATTCAAAGTTGGGACACATGACCGTGT
*
26402844 CCCAGACCATGTGGGCATTCAAAGTTGGGACACATGACCGTGT
1 CCCAGACCATGTGGCCATTCAAAGTTGGGACACATGACCGTGT
26402887 CCCAGACC
1 CCCAGACC
26402895 GTGTCTCTAG
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (43 bp):
CCCAGACCATGTGGCCATTCAAAGTTGGGACACATGACCGTGT
Found at i:26402975 original size:54 final size:54
Alignment explanation
Indices: 26402908--26403043 Score: 146
Period size: 54 Copynumber: 2.5 Consensus size: 54
26402898 TCTCTAGCTG
** * * *
26402908 TGTAACTTTCTGACTAAATACACACAGTCATGTCGCAAACCGTGTGCTAGGCCA
1 TGTAACTCACTGACTTAATACACACAGCCATGTCGCAAACCGTGTGCCAGGCCA
* ** * * **
26402962 TGTAACTCACTGACTTGATACACATGGCCGTGTCGTAGCCCGTGTGCCAGGCCA
1 TGTAACTCACTGACTTAATACACACAGCCATGTCGCAAACCGTGTGCCAGGCCA
* *
26403016 TGTGACTCACTAACTTAATACACACAGC
1 TGTAACTCACTGACTTAATACACACAGC
26403044 AGTGTCACAG
Statistics
Matches: 65, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (54 bp):
TGTAACTCACTGACTTAATACACACAGCCATGTCGCAAACCGTGTGCCAGGCCA
Found at i:26403049 original size:54 final size:54
Alignment explanation
Indices: 26402924--26403093 Score: 171
Period size: 54 Copynumber: 3.1 Consensus size: 54
26402914 TTTCTGACTA
** * * *
26402924 AATACACACAGTCA-TGTCGCAAACCGTGTGCTAGGCCATGTAACTCACTGACTT
1 AATACACACAG-CAGTGTCGCAGCCCGTGTGCCAGGCCATGTGACTCACTAACTT
* ** * *
26402978 GATACACATGGCCGTGTCGTAGCCCGTGTGCCAGGCCATGTGACTCACTAACTT
1 AATACACACAGCAGTGTCGCAGCCCGTGTGCCAGGCCATGTGACTCACTAACTT
* * * * * * *
26403032 AATACACACAGCAGTGTCACAGCCCATGTGCCAGGTCGTATGAGTCACTAAATT
1 AATACACACAGCAGTGTCGCAGCCCGTGTGCCAGGCCATGTGACTCACTAACTT
26403086 AATACACA
1 AATACACA
26403094 TAGTCATGTT
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
53 1 0.01
54 92 0.99
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.23
Consensus pattern (54 bp):
AATACACACAGCAGTGTCGCAGCCCGTGTGCCAGGCCATGTGACTCACTAACTT
Found at i:26404024 original size:40 final size:40
Alignment explanation
Indices: 26403978--26404165 Score: 218
Period size: 40 Copynumber: 4.7 Consensus size: 40
26403968 TAAACAAGAG
* * *
26403978 ACGTATGTGCATTTAGGGGTACCAAAATACAAACAAGGGC
1 ACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGGGGC
26404018 ACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGGGGC
1 ACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGGGGC
* ** ** *
26404058 ATGTATGTGCATTCAAAGGTACTGAAGTACAAATAGGGGC
1 ACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGGGGC
**
26404098 ACGTATGTGCATTCTA-GGGTACTGAAGTACAAACAGGGGC
1 ACGTATGTGCATTC-AGGGGTACCAAAGTACAAACAGGGGC
** * *
26404138 ACACATGTGCA-TCAGAGGTACCGAAGTA
1 ACGTATGTGCATTCAGGGGTACCAAAGTA
26404166 AATTCACACA
Statistics
Matches: 130, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 13 0.10
40 115 0.88
41 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.28, T:0.21
Consensus pattern (40 bp):
ACGTATGTGCATTCAGGGGTACCAAAGTACAAACAGGGGC
Found at i:26410818 original size:351 final size:351
Alignment explanation
Indices: 26410175--26410877 Score: 1397
Period size: 351 Copynumber: 2.0 Consensus size: 351
26410165 TCTGTTACTG
26410175 ATCACATGTCTAAATCATGCCTACTGATTCTGCTATTGATGGCATGTTTAAGCCATGCTTACTAT
1 ATCACATGTCTAAATCATGCCTACTGATTCTGCTATTGATGGCATGTTTAAGCCATGCTTACTAT
26410240 ACAGCTCTATAACATTAAAAACATGTAATATTGTATTAGGGTTGGGATGATGTTTGTAACACCCC
66 ACAGCTCTATAACATTAAAAACATGTAATATTGTATTAGGGTTGGGATGATGTTTGTAACACCCC
26410305 ACGCTCGACTTATCCATCGAATCGTATGGGGCGTCACAAATGTACCTATACTTAGTTTTTGCTAA
131 ACGCTCGACTTATCCATCGAATCGTATGGGGCGTCACAAATGTACCTATACTTAGTTTTTGCTAA
26410370 CTTAATTCCTACAAAACAATCTTAAATAAAATATTCTAAAAATAAAATCAATAATAATTATGATT
196 CTTAATTCCTACAAAACAATCTTAAATAAAATATTCTAAAAATAAAATCAATAATAATTATGATT
26410435 CCTACAACTAAGGCCTTAAGTCATTGAATGCTTAATCATTCAATTCATTTCTATTTCAAATGACA
261 CCTACAACTAAGGCCTTAAGTCATTGAATGCTTAATCATTCAATTCATTTCTATTTCAAATGACA
*
26410500 CTGTTTGCTTACATTACAACTCTTAA
326 CTATTTGCTTACATTACAACTCTTAA
26410526 ATCACATGTCTAAATCATGCCTACTGATTCTGCTATTGATGGCATGTTTAAGCCATGCTTACTAT
1 ATCACATGTCTAAATCATGCCTACTGATTCTGCTATTGATGGCATGTTTAAGCCATGCTTACTAT
26410591 ACAGCTCTATAACATTAAAAACATGTAATATTGTATTAGGGTTGGGATGATGTTTGTAACACCCC
66 ACAGCTCTATAACATTAAAAACATGTAATATTGTATTAGGGTTGGGATGATGTTTGTAACACCCC
26410656 ACGCTCGACTTATCCATCGAATCGTATGGGGCGTCACAAATGTACCTATACTTAGTTTTTGCTAA
131 ACGCTCGACTTATCCATCGAATCGTATGGGGCGTCACAAATGTACCTATACTTAGTTTTTGCTAA
26410721 CTTAATTCCTACAAAACAATCTTAAATAAAATATTCTAAAAATAAAATCAATAATAATTATGATT
196 CTTAATTCCTACAAAACAATCTTAAATAAAATATTCTAAAAATAAAATCAATAATAATTATGATT
26410786 CCTACAACTAAGGCCTTAAGTCATTGAATGCTTAATCATTCAATTCATTTCTATTTCAAATGACA
261 CCTACAACTAAGGCCTTAAGTCATTGAATGCTTAATCATTCAATTCATTTCTATTTCAAATGACA
26410851 CTATTTGCTTACATTACAACTCTTAA
326 CTATTTGCTTACATTACAACTCTTAA
26410877 A
1 A
26410878 ATCTAGCTAA
Statistics
Matches: 351, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
351 351 1.00
ACGTcount: A:0.34, C:0.19, G:0.12, T:0.35
Consensus pattern (351 bp):
ATCACATGTCTAAATCATGCCTACTGATTCTGCTATTGATGGCATGTTTAAGCCATGCTTACTAT
ACAGCTCTATAACATTAAAAACATGTAATATTGTATTAGGGTTGGGATGATGTTTGTAACACCCC
ACGCTCGACTTATCCATCGAATCGTATGGGGCGTCACAAATGTACCTATACTTAGTTTTTGCTAA
CTTAATTCCTACAAAACAATCTTAAATAAAATATTCTAAAAATAAAATCAATAATAATTATGATT
CCTACAACTAAGGCCTTAAGTCATTGAATGCTTAATCATTCAATTCATTTCTATTTCAAATGACA
CTATTTGCTTACATTACAACTCTTAA
Found at i:26412641 original size:40 final size:40
Alignment explanation
Indices: 26412582--26412697 Score: 162
Period size: 40 Copynumber: 2.9 Consensus size: 40
26412572 TATTCGGATG
* *
26412582 ATAACCGGGCTAAGCCCCGACGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACT
* *
26412622 A-ATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACT
* *
26412662 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGT
1 ATAACCGGGCTAAGCCCCGAAGGCATTTGTGCGAGT
26412698 AGCTATGTCC
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.01
40 65 0.97
41 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTGACT
Found at i:26412723 original size:39 final size:40
Alignment explanation
Indices: 26412582--26412723 Score: 128
Period size: 40 Copynumber: 3.6 Consensus size: 40
26412572 TATTCGGATG
** * * * *
26412582 ATAACCGGGCTAAGCCCCGACGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTACT
* ** *
26412622 A-ATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTACT
*
26412662 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTA-CT
**
26412702 ATGTCC-GGCTAAATCCCGAAGG
1 ATAACCGGGCTAAATCCCGAAGG
26412724 TACTTGGTTG
Statistics
Matches: 89, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
39 18 0.20
40 70 0.79
41 1 0.01
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAATCCCGAAGGCATTTGAGCGAGTTACT
Found at i:26415117 original size:22 final size:22
Alignment explanation
Indices: 26415069--26415117 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
26415059 GATGCTTTAA
*
26415069 AATATTTTAATTTTATATGTTT
1 AATAATTTAATTTTATATGTTT
* *
26415091 TATAATTTAATTTTTTAT-TATT
1 AATAATTTAATTTTATATGT-TT
26415113 AATAA
1 AATAA
26415118 AATAAAAGGT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
AATAATTTAATTTTATATGTTT
Found at i:26429655 original size:16 final size:17
Alignment explanation
Indices: 26429623--26429657 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26429613 GCTCATACAA
26429623 AATTTTTCAAAATTTAC
1 AATTTTTCAAAATTTAC
*
26429640 AATTTTTCTAAA-TTAC
1 AATTTTTCAAAATTTAC
26429656 AA
1 AA
26429658 AGGTCACCGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
AATTTTTCAAAATTTAC
Found at i:26431089 original size:44 final size:42
Alignment explanation
Indices: 26430936--26431105 Score: 137
Period size: 43 Copynumber: 4.0 Consensus size: 42
26430926 AGCTCGTACA
* * ***
26430936 ATGCCAACGTCCCAGACGTGGTCTTACATGTTGTCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATA-CG
** * *
26430979 ATG-CATGTGTCCCAGACAGGGTCTTATACGAAATCAAATACG
1 ATGCCA-ACGTCCCAGACATGGTCTTACACGAAATCAAATACG
* * * *
26431021 ATGTCGATGTCCCAGACATAGTCTTACACGCAAATCTAAA-ATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG-AAATC-AAATA-CG
* * *
26431065 ATGCCAACGTCCCAAACATGGTCTTACACAAAATCACATAC
1 ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATAC
26431106 CGAAAATCCT
Statistics
Matches: 100, Mismatches: 21, Indels: 13
0.75 0.16 0.10
Matches are distributed among these distances:
42 30 0.30
43 41 0.41
44 29 0.29
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAAATCAAATACG
Found at i:26442121 original size:11 final size:11
Alignment explanation
Indices: 26442107--26442156 Score: 59
Period size: 11 Copynumber: 4.5 Consensus size: 11
26442097 CCACTTAACA
26442107 ACCACCATATC
1 ACCACCATATC
*
26442118 ACCACCATATA
1 ACCACCATATC
26442129 ACCACC-TAATC
1 ACCACCAT-ATC
26442140 ACCACCAT-TC
1 ACCACCATATC
26442150 AACCACC
1 -ACCACC
26442157 TTAACACTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 3 0.09
11 30 0.88
12 1 0.03
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.16
Consensus pattern (11 bp):
ACCACCATATC
Found at i:26442131 original size:22 final size:22
Alignment explanation
Indices: 26442105--26442157 Score: 74
Period size: 22 Copynumber: 2.4 Consensus size: 22
26442095 CACCACTTAA
26442105 CAACCACC-ATATCACCACCATAT
1 CAACCACCTA-ATCACCACCAT-T
26442128 -AACCACCTAATCACCACCATT
1 CAACCACCTAATCACCACCATT
26442149 CAACCACCT
1 CAACCACCT
26442158 TAACACTACC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.38, C:0.45, G:0.00, T:0.17
Consensus pattern (22 bp):
CAACCACCTAATCACCACCATT
Done.