Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 82 of 259
Found at i:26442168 original size:22 final size:22
Alignment explanation
Indices: 26442105--26442168 Score: 69
Period size: 22 Copynumber: 2.9 Consensus size: 22
26442095 CACCACTTAA
*
26442105 CAACCACCATATCACCACCATAT
1 CAACCACC-TAACACCACCATAT
26442128 -AACCACCTAATCACCACCAT-T
1 CAACCACCTAA-CACCACCATAT
*
26442149 CAACCACCTTAACACTACCA
1 CAACCACC-TAACACCACCA
26442169 CCACATCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
21 3 0.08
22 30 0.83
23 3 0.08
ACGTcount: A:0.39, C:0.44, G:0.00, T:0.17
Consensus pattern (22 bp):
CAACCACCTAACACCACCATAT
Found at i:26443173 original size:49 final size:49
Alignment explanation
Indices: 26443083--26443192 Score: 134
Period size: 49 Copynumber: 2.3 Consensus size: 49
26443073 AAAATTTGCA
** *
26443083 AATTTGGTGG-TTTTTCCACAACCTAAATCTTTTGGTAGCTTGTCTACG
1 AATTTGGTGGCTTTTTCCACAACCTAAATCTACTGGTAGCTTGCCTACG
* * **
26443131 AATTTGGTGGCTTTTGTCCACAA-CTATATGTACTGGTAGCTTGCCTGTG
1 AATTTGGTGGCTTTT-TCCACAACCTAAATCTACTGGTAGCTTGCCTACG
26443180 AATTTGGTGGCTT
1 AATTTGGTGGCTT
26443193 CGTCTTCATT
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
48 10 0.19
49 36 0.68
50 7 0.13
ACGTcount: A:0.19, C:0.17, G:0.23, T:0.41
Consensus pattern (49 bp):
AATTTGGTGGCTTTTTCCACAACCTAAATCTACTGGTAGCTTGCCTACG
Found at i:26451983 original size:130 final size:130
Alignment explanation
Indices: 26451750--26452004 Score: 413
Period size: 130 Copynumber: 2.0 Consensus size: 130
26451740 TTGATGAAGT
* *
26451750 TGCCTACTTGGCGGCTAATAAGGCTATACCTATTTTGTATTCTTTATCTAATCAAATTTTCTTTC
1 TGCCTACTTGGCGACTAATAAGGCTATACCTATTTTGTATTCTTTATCTAATAAAATTTTCTTTC
* * * *
26451815 TCTGTCAGTTGTACGTTTAATGTATGCACTTACTTTTCCTTTCTCTACATTTATCTACTCGCGAC
66 TCTATCAATTGTACGTTTAATCTATGCACTTACTTTTCCTTTCTCTAAATTTATCTACTCGCGAC
*
26451880 TGCCTACTTGGCGACTAATAAGGCTATACCTCTTTTGTATTCTTTATCTAATAAAATTTTCTTTC
1 TGCCTACTTGGCGACTAATAAGGCTATACCTATTTTGTATTCTTTATCTAATAAAATTTTCTTTC
* *
26451945 TCTATCAATTGTAC-TTTCAATCTCTGTACTTACTTTTCCTTTCTCTAAATTTATCTACTC
66 TCTATCAATTGTACGTTT-AATCTATGCACTTACTTTTCCTTTCTCTAAATTTATCTACTC
26452005 ACATTTTCTT
Statistics
Matches: 115, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
129 3 0.03
130 112 0.97
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (130 bp):
TGCCTACTTGGCGACTAATAAGGCTATACCTATTTTGTATTCTTTATCTAATAAAATTTTCTTTC
TCTATCAATTGTACGTTTAATCTATGCACTTACTTTTCCTTTCTCTAAATTTATCTACTCGCGAC
Found at i:26454940 original size:13 final size:13
Alignment explanation
Indices: 26454922--26454946 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26454912 GCTAAGCACG
26454922 TTTTCTTGCCACC
1 TTTTCTTGCCACC
26454935 TTTTCTTGCCAC
1 TTTTCTTGCCAC
26454947 TAATGCAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.36, G:0.08, T:0.48
Consensus pattern (13 bp):
TTTTCTTGCCACC
Found at i:26460978 original size:26 final size:28
Alignment explanation
Indices: 26460943--26460996 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
26460933 TTGTTATTTT
26460943 TTATGTTTTAAATTTTA-TTTTAATAAA
1 TTATGTTTTAAATTTTATTTTTAATAAA
*
26460970 TTATG-TTTATATTTTATTTTTAATAAA
1 TTATGTTTTAAATTTTATTTTTAATAAA
26460997 AATATTTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 10 0.40
27 15 0.60
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (28 bp):
TTATGTTTTAAATTTTATTTTTAATAAA
Found at i:26461004 original size:26 final size:26
Alignment explanation
Indices: 26460949--26461011 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
26460939 TTTTTTATGT
* * *
26460949 TTTAAATTTTATTTTAATAAATTATG
1 TTTATATTTTATTTTAATAAATAATA
26460975 TTTATATTTTATTTTTAATAAA-AATA
1 TTTATATTTTA-TTTTAATAAATAATA
*
26461001 TTTATGTTTTA
1 TTTATATTTTA
26461012 ATATTTATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 10 0.31
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (26 bp):
TTTATATTTTATTTTAATAAATAATA
Found at i:26461534 original size:16 final size:16
Alignment explanation
Indices: 26461513--26461566 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
26461503 TTTGGTTGGT
26461513 TGTAATGGAATAG-GAC
1 TGTAATGGAATAGAG-C
*
26461529 TGTAATTGAATAGAGC
1 TGTAATGGAATAGAGC
*
26461545 TGTAATGAAATAGAGC
1 TGTAATGGAATAGAGC
26461561 TGTAAT
1 TGTAAT
26461567 AAGTAATTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
16 33 0.97
17 1 0.03
ACGTcount: A:0.39, C:0.06, G:0.26, T:0.30
Consensus pattern (16 bp):
TGTAATGGAATAGAGC
Found at i:26461834 original size:17 final size:17
Alignment explanation
Indices: 26461812--26461844 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26461802 AATTATTCTT
26461812 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
26461829 AAATATAATTTAATAA
1 AAATATAATTTAATAA
26461845 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:26463689 original size:19 final size:19
Alignment explanation
Indices: 26463657--26463704 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
26463647 TTTACAATAA
*
26463657 TTTTTTTAGCTATTTAACT
1 TTTTTTTAACTATTTAACT
* * *
26463676 TTTTTTTAATTATTTTAGT
1 TTTTTTTAACTATTTAACT
26463695 TTTTATTTAA
1 TTTT-TTTAA
26463705 ATTTTTGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 19 0.79
20 5 0.21
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.69
Consensus pattern (19 bp):
TTTTTTTAACTATTTAACT
Found at i:26463710 original size:19 final size:19
Alignment explanation
Indices: 26463675--26463719 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26463665 GCTATTTAAC
*
26463675 TTTTTTTTAATTATTTTAG
1 TTTTTTTTAAATATTTTAG
*
26463694 TTTTTATTTAAAT-TTTTGG
1 TTTTT-TTTAAATATTTTAG
26463713 TTTTTTT
1 TTTTTTT
26463720 CTAGCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.09
19 15 0.65
20 6 0.26
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.76
Consensus pattern (19 bp):
TTTTTTTTAAATATTTTAG
Found at i:26471526 original size:50 final size:49
Alignment explanation
Indices: 26471467--26471799 Score: 266
Period size: 50 Copynumber: 6.8 Consensus size: 49
26471457 GATGCTAGGG
* * **
26471467 AGATATGAGAGCTAGTGTAAGACTATGTATGGGACATGAAATCGGCCTT
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * * *
26471516 AAGATATGAGAGATAGTGTAAGACCATGTCTAGGACATGGCATTGACCTCG
1 -AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-T
* * *
26471567 AGATATGGGAGCTAGTGTAAGACTATGTCTGGGGCATGGCATCGG-CTT
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * **
26471615 -GATATGTG-TC-AGTGTAAGACCATGTCTGGGACATGGCATCTGCACCG
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTT
* * * * * *
26471662 ATAGATGAGAGCCAGTGTAAGACCATGTTTGGGACATGACATCGACC-T
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * * *
26471710 CGATATACTAGAG-TCAGTCTAAGACCATGTTTGGGACATGGCATC-GACTT
1 AGATAT--GAGAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
* * * * *
26471760 TGATGTGTGAGCCAGTGTAAGACCATGTCCGGGACATGGC
1 AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
26471800 GTCAGCACCT
Statistics
Matches: 222, Mismatches: 50, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
45 29 0.13
46 1 0.00
47 8 0.04
48 35 0.16
49 5 0.02
50 144 0.65
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (49 bp):
AGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTT
Found at i:26471748 original size:100 final size:97
Alignment explanation
Indices: 26471471--26471797 Score: 310
Period size: 100 Copynumber: 3.4 Consensus size: 97
26471461 CTAGGGAGAT
* * * * *
26471471 ATGAGAGCTAGTGTAAGACTATGTATGGGACATGAAATCGGCCTTAAGATATGAGAGAT-AGTGT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATC-GCCTTGA-ATAT-AGAG-TCAGTGT
* * *
26471535 AAGACCATGTCTAGGACATGGCAT-TGACCTCGAGAT
62 AAGACCATGTCTGGGACATGGCATCTGA-CTCGATAG
* * * * * * *
26471571 ATGGGAGCTAGTGTAAGACTATGTCTGGGGCATGGCATCGGCTTG-ATAT-GTGTCAGTGTAAGA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGCCTTGAATATAGAGTCAGTGTAAGA
26471634 CCATGTCTGGGACATGGCATCTGCAC-CGATAG
66 CCATGTCTGGGACATGGCATCTG-ACTCGATAG
* * *
26471666 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGACATCGACCTCGATATACTAGAGTCAGTCTA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCG-CCTTGA-ATA-TAGAGTCAGTGTA
* *
26471731 AGACCATGTTTGGGACATGGCATC-GACTTTGAT-G
63 AGACCATGTCTGGGACATGGCATCTGAC-TCGATAG
* *
26471765 -TGTGAGCCAGTGTAAGACCATGTCCGGGACATG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATG
26471798 GCGTCAGCAC
Statistics
Matches: 191, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
94 1 0.01
95 68 0.36
96 6 0.03
97 5 0.03
98 35 0.18
99 7 0.04
100 69 0.36
ACGTcount: A:0.28, C:0.17, G:0.29, T:0.25
Consensus pattern (97 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGACATCGCCTTGAATATAGAGTCAGTGTAAGA
CCATGTCTGGGACATGGCATCTGACTCGATAG
Found at i:26471750 original size:145 final size:147
Alignment explanation
Indices: 26471521--26471808 Score: 359
Period size: 145 Copynumber: 2.0 Consensus size: 147
26471511 GCCTTAAGAT
* * * * *
26471521 ATGAGAGATAGTGTAAGACCATGTCTAGGACATGGCATTGACCTCGAGATATGGGAGCTAGTGTA
1 ATGAGAGACAGTGTAAGACCATGTCTAGGACATGACATCGACCTCGAGATATGAGAGCTAGTCTA
* * * * *
26471586 AGACTATGTCTGGGGCATGGCATCGGC-TTGATATGT-GTCAGTGTAAGACCATGTCTGGGACAT
66 AGACCATGTCTGGGACATGGCATCGACTTTGATATGTAGCCAGTGTAAGACCATGTCCGGGACAT
*
26471649 GGCATCTGCACCGATAG
131 GGCATCAGCACCGATAG
* * * *
26471666 ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGACATCGACCTCGATATACT-AGAG-TCAGTC
1 ATGAGAGACAGTGTAAGACCATGTCTAGGACATGACATCGACCTCGAGATA-TGAGAGCT-AGTC
* *
26471729 TAAGACCATGTTTGGGACATGGCATCGACTTTGATGTGTGAGCCAGTGTAAGACCATGTCCGGGA
64 TAAGACCATGTCTGGGACATGGCATCGACTTTGATATGT-AGCCAGTGTAAGACCATGTCCGGGA
*
26471794 CATGGCGTCAGCACC
128 CATGGCATCAGCACC
26471809 TTATCCTATG
Statistics
Matches: 120, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
144 1 0.01
145 75 0.62
146 9 0.08
148 35 0.29
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (147 bp):
ATGAGAGACAGTGTAAGACCATGTCTAGGACATGACATCGACCTCGAGATATGAGAGCTAGTCTA
AGACCATGTCTGGGACATGGCATCGACTTTGATATGTAGCCAGTGTAAGACCATGTCCGGGACAT
GGCATCAGCACCGATAG
Found at i:26478910 original size:46 final size:46
Alignment explanation
Indices: 26478854--26479029 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
26478844 TGGTTGAGCA
*
26478854 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * *
26478900 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
26478947 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
26478993 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26479030 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 63 0.58
47 28 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:26479010 original size:93 final size:93
Alignment explanation
Indices: 26478851--26479021 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
26478841 GGATGGTTGA
* * * *
26478851 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
26478916 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
26478944 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
26479009 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26479022 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:26485781 original size:43 final size:42
Alignment explanation
Indices: 26485734--26485870 Score: 109
Period size: 43 Copynumber: 3.2 Consensus size: 42
26485724 TCCCGGACGT
*
26485734 GGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGACAA
1 GGTCTTACATGTAACTCAATA-CGATGCCTATGTCCCAGACAA
* * * * * *
26485777 GGTCTTACACG-AAATTAGATACGATGTCGATGTCCCAGACAT
1 GGTCTTACATGTAACTCA-ATACGATGCCTATGTCCCAGACAA
* * * *
26485819 GGTCTTATATGTAAATCTCAA-CCGAGGCCTGTGTCCCAGACACA
1 GGTCTTACATGT-AA-CTCAATACGATGCCTATGTCCCAGACA-A
26485863 -GTCTTACA
1 GGTCTTACA
26485871 CGATGTCAAA
Statistics
Matches: 71, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
42 30 0.42
43 36 0.51
44 3 0.04
45 2 0.03
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
GGTCTTACATGTAACTCAATACGATGCCTATGTCCCAGACAA
Found at i:26488135 original size:6 final size:6
Alignment explanation
Indices: 26488124--26488155 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
26488114 ATTGCATGAA
26488124 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT AT
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT AT
26488156 TTATTTGTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (6 bp):
ATGTAT
Found at i:26488496 original size:48 final size:48
Alignment explanation
Indices: 26488225--26488494 Score: 342
Period size: 48 Copynumber: 5.6 Consensus size: 48
26488215 ATAAGGTCCC
* * * * *
26488225 GTGTAAGACCATGTCTGGGACATGGCATTGACATAGATATGAGACCCC
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGAGCCA
* * * * *
26488273 GTATAAGACCATATCTGGGATATGGAATCAACATTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGAGCCA
* * *
26488321 GTGTAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGAGCCA
* *
26488369 GTGTAAGACCATGTTTGGGACATGGCATCGACATGGATATGTGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGAGCCA
* * * * * *
26488417 GTGTAAGACCATGCCTGGGACATGGCGTCGGCGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGAGCCA
*
26488465 GTGTAAGACCATGTCTAGGACATGGCATCG
1 GTGTAAGACCATGTCTGGGACATGGCATCG
26488495 GCACTAACAT
Statistics
Matches: 190, Mismatches: 32, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
48 190 1.00
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.26
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACATTGATATGTGAGCCA
Found at i:26488520 original size:96 final size:96
Alignment explanation
Indices: 26488228--26488542 Score: 269
Period size: 96 Copynumber: 3.3 Consensus size: 96
26488218 AGGTCCCGTG
* * * * * * * * * * *
26488228 TAAGACCATGTCTGGGACATGGCATTGACATAGATATGAGACCCCGTATAAGACCATATCTGGGA
1 TAAGACCATGCCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGA
* * * * * *
26488293 TATGGAATCAACATTG-ATATGTGAGCCAGTG
66 CATGGCATCGACA-TGAACATGAGAGCCAGTA
** * *
26488324 TAAGACCATGTTTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTTTGGGA
1 TAAGACCATGCCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGA
* * * *
26488389 CATGGCATCGACATGGATATGTGAGCCAGTG
66 CATGGCATCGACATGAACATGAGAGCCAGTA
* * *
26488420 TAAGACCATGCCTGGGACATGGCGTCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTAGGA
1 TAAGACCATGCCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGA
* **
26488485 CATGGCATCGGCACT-AACATGAGATTTCA-TA
66 CATGGCATCGACA-TGAACATGAGA-GCCAGTA
* *
26488516 TAAGACCATATCC-GGGATATGGCATCG
1 TAAGACCAT-GCCTGGGACATGGCATCG
26488543 ATATTGGGAT
Statistics
Matches: 184, Mismatches: 31, Indels: 8
0.83 0.14 0.04
Matches are distributed among these distances:
95 2 0.01
96 177 0.96
97 5 0.03
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (96 bp):
TAAGACCATGCCTGGGACATGGCATCGGCGTTGATATGTGAGCCAGTGTAAGACCATGTCTAGGA
CATGGCATCGACATGAACATGAGAGCCAGTA
Found at i:26488520 original size:144 final size:144
Alignment explanation
Indices: 26488228--26488543 Score: 346
Period size: 144 Copynumber: 2.2 Consensus size: 144
26488218 AGGTCCCGTG
* * *
26488228 TAAGACCATGTCTGGGACATGGCATTGACATAGATATGAGACCCCGTATAAGACCATATCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGACATAGATATGAGACCCAGTATAAGACCATACCTGGGA
* * * ** *
26488293 TATGGAATCAACATTGATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCGTTGA
66 CATGGAATCAACATTGATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTAA
* * *
26488358 TATGTGAGCCAGTG
131 CATGAGAGCCAGTA
* * * * * *
26488372 TAAGACCATGTTTGGGACATGGCATCGACATGGATATGTGAGCCAGTGTAAGACCATGCCTGGGA
1 TAAGACCATGTCTGGGACATGGCATCGACATAGATATGAGACCCAGTATAAGACCATACCTGGGA
** ** * * *
26488437 CATGGCGTCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTAA
66 CATGGAATCAACATTGATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTAA
**
26488502 CATGAGATTTCA-TA
131 CATGAGA-GCCAGTA
* * *
26488516 TAAGACCATATCCGGGATATGGCATCGA
1 TAAGACCATGTCTGGGACATGGCATCGA
26488544 TATTGGGATC
Statistics
Matches: 140, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
144 138 0.99
145 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.25
Consensus pattern (144 bp):
TAAGACCATGTCTGGGACATGGCATCGACATAGATATGAGACCCAGTATAAGACCATACCTGGGA
CATGGAATCAACATTGATATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACTAA
CATGAGAGCCAGTA
Found at i:26488580 original size:42 final size:48
Alignment explanation
Indices: 26488468--26488589 Score: 121
Period size: 42 Copynumber: 2.7 Consensus size: 48
26488458 TGTGCTAGTG
*
26488468 TAAGACCATGTCTAGGACATGGCATCGGCACTAACATGAGATTTCATA
1 TAAGACCATGTCTAGGACATGGCATCGGCACTAACATGAGATTCCATA
* ** * * *
26488516 TAAGACCATATCCGGGATATGGCATC-G-A-T-A-TTGGGA-TCCATA
1 TAAGACCATGTCTAGGACATGGCATCGGCACTAACATGAGATTCCATA
* *
26488558 TAAGACCATGTCTAGGACATGGCTTTGGCACT
1 TAAGACCATGTCTAGGACATGGCATCGGCACT
26488590 CTATTTGGTG
Statistics
Matches: 58, Mismatches: 13, Indels: 9
0.73 0.16 0.11
Matches are distributed among these distances:
42 25 0.43
43 5 0.09
44 2 0.03
45 2 0.03
46 1 0.02
47 1 0.02
48 22 0.38
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.26
Consensus pattern (48 bp):
TAAGACCATGTCTAGGACATGGCATCGGCACTAACATGAGATTCCATA
Found at i:26491091 original size:17 final size:17
Alignment explanation
Indices: 26491069--26491109 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
26491059 AGTAACATTT
*
26491069 TTATCATTTATCGGGCA
1 TTATCATTGATCGGGCA
26491086 TTATCATTGATCGGGCA
1 TTATCATTGATCGGGCA
*
26491103 TTGTCAT
1 TTATCAT
26491110 ATATGTTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.41
Consensus pattern (17 bp):
TTATCATTGATCGGGCA
Found at i:26496012 original size:43 final size:43
Alignment explanation
Indices: 26495936--26496172 Score: 152
Period size: 43 Copynumber: 5.5 Consensus size: 43
26495926 CACATATCAA
* * *
26495936 AATCATATATCGATGTCAACGTATTAAATGTGGTCTTACGCAC
1 AATCACATATCGATGTCAACGTACTAAACGTGGTCTTACGCAC
* *
26495979 ACA-CACATATCGATGTCAACGTACTAAACGTGGTCTTACTCAT
1 A-ATCACATATCGATGTCAACGTACTAAACGTGGTCTTACGCAC
* * * * ** ****
26496022 AATCACATATCGATGCCAATGTCCCAGGCGTGGTCTTACATGT
1 AATCACATATCGATGTCAACGTACTAAACGTGGTCTTACGCAC
* * * * * * * **
26496065 AATCATATATCAATGCCAACGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGTCAACGTACTAAACGTGGTCTTACGCAC
* * * * * * **
26496108 AATCACATATCGATGCCAATGTCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGTCAACGTACTAAACGTGGTCTTACGCAC
* *
26496151 AATCATATATCGATGCCAACGT
1 AATCACATATCGATGTCAACGT
26496173 CCCAGACGTT
Statistics
Matches: 168, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
42 1 0.01
43 166 0.99
44 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (43 bp):
AATCACATATCGATGTCAACGTACTAAACGTGGTCTTACGCAC
Found at i:26496175 original size:43 final size:43
Alignment explanation
Indices: 26495982--26496204 Score: 293
Period size: 43 Copynumber: 5.2 Consensus size: 43
26495972 TACGCACACA
* * * * * *
26495982 CACATATCGATGTCAACGTACTAAACGTGGTCTTACTCATAAT
1 CACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAAT
* * *
26496025 CACATATCGATGCCAATGTCCCAGGCGTGGTCTTACATGTAAT
1 CACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAAT
* *
26496068 CATATATCAATGCCAACGTCCCAGACGTGGTCTTACACGTAAT
1 CACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAAT
*
26496111 CACATATCGATGCCAATGTCCCAGACGTGGTCTTACACGTAAT
1 CACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAAT
* * * *
26496154 CATATATCGATGCCAACGTCCCAGACGTTGTCATGCACGTAAT
1 CACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAAT
*
26496197 TACATATC
1 CACATATC
26496205 ATAAATCCTA
Statistics
Matches: 156, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
CACATATCGATGCCAACGTCCCAGACGTGGTCTTACACGTAAT
Found at i:26500625 original size:27 final size:27
Alignment explanation
Indices: 26500587--26500639 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
26500577 CAATTATACA
* *
26500587 TCACATAGGGGCATAAGAGTCATTTTC
1 TCACATAAGGGCATAACAGTCATTTTC
26500614 TCACATAAGGGCATAACAGTCATTTT
1 TCACATAAGGGCATAACAGTCATTTT
26500640 ATGTAACACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (27 bp):
TCACATAAGGGCATAACAGTCATTTTC
Found at i:26516502 original size:27 final size:27
Alignment explanation
Indices: 26516472--26516646 Score: 172
Period size: 27 Copynumber: 6.4 Consensus size: 27
26516462 TTGAGTCCGT
* *
26516472 ACACTCAGTGCTATATAATCAACTCGC
1 ACACTTAGTGCTACATAATCAACTCGC
* *
26516499 ACACTTAGTGCTACGTAATCAAATCGC
1 ACACTTAGTGCTACATAATCAACTCGC
*
26516526 ACACTTAGTGCTACATAGTCAAACTCGC
1 ACACTTAGTGCTACATAATC-AACTCGC
** ** *
26516554 ACACTTAGTGCCGCATGGTCAATTCGC
1 ACACTTAGTGCTACATAATCAACTCGC
** **
26516581 ACACTTAGTGC-ATCATGTTCATTTCGC
1 ACACTTAGTGCTA-CATAATCAACTCGC
* * *
26516608 ACACTTAGTGCAACATAGTCAAATCGC
1 ACACTTAGTGCTACATAATCAACTCGC
26516635 ACACTTAGTGCT
1 ACACTTAGTGCT
26516647 GTACAATTTA
Statistics
Matches: 126, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 102 0.81
28 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (27 bp):
ACACTTAGTGCTACATAATCAACTCGC
Found at i:26528557 original size:40 final size:40
Alignment explanation
Indices: 26528502--26528584 Score: 121
Period size: 40 Copynumber: 2.1 Consensus size: 40
26528492 TATTCGGATG
* * *
26528502 ATATCCGGACTAAGATCCGAAGGCATTTGTGCTAGTTACT
1 ATATCCAGACTAAGATCCGAAGACAATTGTGCTAGTTACT
* *
26528542 ATATCCAGACTAAGATCTGAAGACAATTGTGCTAGTTATT
1 ATATCCAGACTAAGATCCGAAGACAATTGTGCTAGTTACT
26528582 ATA
1 ATA
26528585 ACCGGGTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (40 bp):
ATATCCAGACTAAGATCCGAAGACAATTGTGCTAGTTACT
Found at i:26528612 original size:40 final size:40
Alignment explanation
Indices: 26528518--26528654 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 40
26528508 GGACTAAGAT
* * * **
26528518 CCGAAGGCATTTGTGCTAGTTACTATATCCAGACTAAGAT-
1 CCGAAGGCATTTGTGCTAGTTATTATAACCGGGTTAA-ATC
* * * *
26528558 CTGAAGACAATTGTGCTAGTTATTATAACCGGGTTAACTC
1 CCGAAGGCATTTGTGCTAGTTATTATAACCGGGTTAAATC
** *
26528598 CCGAAGGCATTTGTGCGGGTTATTATAACCGGGTTAAGTC
1 CCGAAGGCATTTGTGCTAGTTATTATAACCGGGTTAAATC
*
26528638 CCGAAGGCATTCGTGCT
1 CCGAAGGCATTTGTGCT
26528655 GGTTGTTACA
Statistics
Matches: 79, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
39 1 0.01
40 78 0.99
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTATTATAACCGGGTTAAATC
Found at i:26533437 original size:47 final size:47
Alignment explanation
Indices: 26533359--26533766 Score: 600
Period size: 47 Copynumber: 8.6 Consensus size: 47
26533349 CCCTTCGGGA
* * * * * * *
26533359 CTTATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26533406 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26533453 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533500 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26533549 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC----ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533600 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26533647 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26533694 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26533741 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
26533767 CACAATTATC
Statistics
Matches: 332, Mismatches: 25, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 239 0.72
49 46 0.14
51 47 0.14
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26533704 original size:194 final size:190
Alignment explanation
Indices: 26533359--26533757 Score: 676
Period size: 194 Copynumber: 2.1 Consensus size: 190
26533349 CCCTTCGGGA
* *
26533359 CTTATCACAT-T-TATATACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATATACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
26533422 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
26533487 TCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCTATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26533549 CTTATCACATATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
1 CTTATCACATATATATAT--ACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATAT
*
26533614 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCA
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCA
* *
26533679 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
129 CATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26533741 CTTATCACATATATATA
1 CTTATCACATATATATA
26533758 CATTCACATC
Statistics
Matches: 197, Mismatches: 8, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
190 10 0.05
191 1 0.01
192 59 0.30
194 127 0.64
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (190 bp):
CTTATCACATATATATATACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACA
TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26533803 original size:141 final size:141
Alignment explanation
Indices: 26533361--26533766 Score: 537
Period size: 147 Copynumber: 2.8 Consensus size: 141
26533351 CTTCGGGACT
* * * * * * * * *
26533361 TATCACATTTATATACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC-ATATATACACT
1 TATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACT
* * * * *
26533425 TTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCG
65 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATCA
* *
26533490 GCTATTAGGCCT
130 GCCATTAGGCCA
26533502 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAT
1 TATCAC--A-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--A-ATATAT
*
26533567 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
60 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCA
* *
26533632 CATCGGCCATTAGGCCT
125 CATCAGCCATTAGGCCA
*
26533649 TATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATATACACT
1 TATCACA-ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACT
*
26533713 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACATTCACAT
65 TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACAT
26533767 CACAATTATC
Statistics
Matches: 243, Mismatches: 16, Indels: 12
0.90 0.06 0.04
Matches are distributed among these distances:
141 69 0.28
143 38 0.16
145 46 0.19
147 90 0.37
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (141 bp):
TATCACAATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAATATATACACTT
TCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACATTCACATTCATCACATCAG
CCATTAGGCCA
Found at i:26542046 original size:58 final size:58
Alignment explanation
Indices: 26541956--26542067 Score: 215
Period size: 58 Copynumber: 1.9 Consensus size: 58
26541946 ACGTGAAGTA
*
26541956 AAAGAACTATGAAATAAGAAAATCTCATTAGTGAAGGTACTGTGGCTTAAGCACAGGT
1 AAAGAACTACGAAATAAGAAAATCTCATTAGTGAAGGTACTGTGGCTTAAGCACAGGT
26542014 AAAGAACTACGAAATAAGAAAATCTCATTAGTGAAGGTACTGTGGCTTAAGCAC
1 AAAGAACTACGAAATAAGAAAATCTCATTAGTGAAGGTACTGTGGCTTAAGCAC
26542068 GGGGTCGAAG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.23
Consensus pattern (58 bp):
AAAGAACTACGAAATAAGAAAATCTCATTAGTGAAGGTACTGTGGCTTAAGCACAGGT
Found at i:26543960 original size:93 final size:93
Alignment explanation
Indices: 26543801--26543971 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
26543791 GGATGGTTGA
* * * * *
26543801 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTAAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGGCCAAACTCGTTGAGT
26543866 TGAGTCCAAGTTCGTGAAATGTAACTAG
66 TGAGTCCAAGTTCGTGAAATGTAACTAG
* * *
26543894 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGTGAACGGCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGGCCAAACTCGTTGAGT
*
26543959 TGAGTCCGAGTTC
66 TGAGTCCAAGTTC
26543972 ACTTAGGGGC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGCGAACGGCCAAACTCGTTGAGT
TGAGTCCAAGTTCGTGAAATGTAACTAG
Found at i:26543968 original size:46 final size:46
Alignment explanation
Indices: 26543805--26543976 Score: 163
Period size: 46 Copynumber: 3.7 Consensus size: 46
26543795 GGTTGAGCAT
* * *
26543805 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGG
** * * * *
26543851 CTAAACTCGTTGAGTTGAGTCCAAGTTC-GTGA--AATGT-AACTAGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAAC--GG
* *
26543895 CATCCGAACTCATTGAGTTGAGCCCGAGTTCACTTATGGATGTGAACGG
1 ---CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGG
*
26543944 CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26543977 GGGGCGGTTA
Statistics
Matches: 97, Mismatches: 20, Indels: 18
0.72 0.15 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 55 0.57
47 23 0.24
48 2 0.02
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAACGG
Found at i:26545712 original size:28 final size:28
Alignment explanation
Indices: 26545649--26545828 Score: 312
Period size: 28 Copynumber: 6.5 Consensus size: 28
26545639 ATATTAAGTC
* *
26545649 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
26545676 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
26545704 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
26545732 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
26545760 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
26545788 CGCACACTTAGTGCTACAT-ATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
26545814 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26545829 GTACAATTTA
Statistics
Matches: 150, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
26 19 0.13
27 25 0.17
28 106 0.71
ACGTcount: A:0.33, C:0.29, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:26553993 original size:28 final size:28
Alignment explanation
Indices: 26553930--26554111 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
26553920 ATATTAAGTC
* *
26553930 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
26553957 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
26553985 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
26554013 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
26554041 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
26554069 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
26554097 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26554112 GTACAATTTA
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 127 0.85
ACGTcount: A:0.34, C:0.30, G:0.12, T:0.25
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:26562739 original size:46 final size:46
Alignment explanation
Indices: 26562686--26562858 Score: 183
Period size: 46 Copynumber: 3.7 Consensus size: 46
26562676 TGGTTGAGCA
26562686 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
26562732 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
26562777 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
26562825 GCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
26562859 GGGGCGGGTT
Statistics
Matches: 102, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 59 0.58
47 27 0.26
48 3 0.03
50 2 0.02
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26562842 original size:93 final size:93
Alignment explanation
Indices: 26562683--26562853 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
26562673 GGATGGTTGA
* * * * *
26562683 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGGCCGAACTCGTTGAGT
26562748 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
26562776 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGGCCGAGCTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGGCCGAACTCGTTGAGT
26562841 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
26562854 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGGCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26565304 original size:24 final size:24
Alignment explanation
Indices: 26565268--26565341 Score: 112
Period size: 24 Copynumber: 3.1 Consensus size: 24
26565258 GGGTCAACAT
*
26565268 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
26565292 TGGCACTATGTGTGCGAAATTGAA
1 TGGCACTATGTGTGCGGATTTGAA
*
26565316 TGGCACTATGTGTGCTGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
26565340 TG
1 TG
26565342 TCAATACATG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.32
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:26572889 original size:32 final size:34
Alignment explanation
Indices: 26572830--26572920 Score: 96
Period size: 32 Copynumber: 2.7 Consensus size: 34
26572820 TCTTGTTTTA
* * * * *
26572830 TATATAAAATATATACATACATATATGGTCCTAT
1 TATATATACTATATATATGCATCTATGGTCCTAT
* * *
26572864 TATATA-AC-ATATATATGCCTCTATGGTTCTGT
1 TATATATACTATATATATGCATCTATGGTCCTAT
26572896 TATATATACTATATATATGCATCTA
1 TATATATACTATATATATGCATCTA
26572921 GAGATTTATT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
32 24 0.51
33 3 0.06
34 20 0.43
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (34 bp):
TATATATACTATATATATGCATCTATGGTCCTAT
Found at i:26577031 original size:40 final size:40
Alignment explanation
Indices: 26576976--26577180 Score: 258
Period size: 40 Copynumber: 5.2 Consensus size: 40
26576966 CGGATGACAA
* *
26576976 CGAAGGCATTTGTGCTAATGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
*
26577016 CGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATA-TCCGGGCTAAGTCC
* *
26577056 CGAAGGCACTTGTGCGAGTTACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
*
26577096 CGAAGGCATTGGTGCGAGCT-ACTATATCCGGGCTAAGTCC
1 CGAAGGCATTTGTGCGAG-TGACTATATCCGGGCTAAGTCC
* * *
26577136 CGAAGGCATTTGAGCGAGT-AGCTATATCC-GGTTAAATCC
1 CGAAGGCATTTGTGCGAGTGA-CTATATCCGGGCTAAGTCC
26577175 CGAAGG
1 CGAAGG
26577181 TACTTGGTTT
Statistics
Matches: 152, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 16 0.11
40 134 0.88
41 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CGAAGGCATTTGTGCGAGTGACTATATCCGGGCTAAGTCC
Found at i:26581744 original size:27 final size:27
Alignment explanation
Indices: 26581706--26581782 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
26581696 TCGGAGGAAG
* *
26581706 TACTGTACTAGTGGCTTTGCCACGTTT
1 TACTGTTCTAGTGTCTTTGCCACGTTT
* *
26581733 TACTGTTCTAGTGTCTTTGTCATGTTT
1 TACTGTTCTAGTGTCTTTGCCACGTTT
26581760 TACTGTTCTAGTGTCTTTGCCAC
1 TACTGTTCTAGTGTCTTTGCCAC
26581783 TTATCCTAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.13, C:0.21, G:0.19, T:0.47
Consensus pattern (27 bp):
TACTGTTCTAGTGTCTTTGCCACGTTT
Found at i:26584602 original size:30 final size:30
Alignment explanation
Indices: 26584568--26584630 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
26584558 ACTTAATAAG
26584568 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* * *
26584598 CAAATGTCTTTAAAATAGTAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
26584628 CAA
1 CAA
26584631 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Found at i:26584685 original size:22 final size:22
Alignment explanation
Indices: 26584660--26584701 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26584650 TATCCAAATA
26584660 ATAACAATAAAATAGTAGCAGC
1 ATAACAATAAAATAGTAGCAGC
* * *
26584682 ATAATAGTAAAATGGTAGCA
1 ATAACAATAAAATAGTAGCA
26584702 AAAAAGGGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.10, G:0.17, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAGC
Found at i:26586917 original size:54 final size:54
Alignment explanation
Indices: 26586856--26587033 Score: 200
Period size: 54 Copynumber: 3.3 Consensus size: 54
26586846 TAAACTGTAC
* *
26586856 AGCACTAAGTGTGCGAAATGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGAAATGA-TATGTGGCACTAAGTGTGCGAATTGAATATGAT
* * *
26586911 -GCACTAAGTGTGCGAAATGATCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGAAATGAT-ATGTGGCACTAAGTGTGCGA-ATTGAATATGAT
** * * *
26586965 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGAAATGA-TATGTGGCACTAAGTGTGCGAATTGAATATGAT
*
26587019 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26587034 GGCTCAATAT
Statistics
Matches: 106, Mismatches: 12, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
53 1 0.01
54 61 0.58
55 43 0.41
56 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGAAATGATATGTGGCACTAAGTGTGCGAATTGAATATGAT
Found at i:26586971 original size:82 final size:81
Alignment explanation
Indices: 26586857--26587007 Score: 214
Period size: 82 Copynumber: 1.9 Consensus size: 81
26586847 AAACTGTACA
* *
26586857 GCACTAAGTGTGCGAAATGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAAATGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
26586921 TGCGAAATGATCATGCG
65 TGCGAAATGATCATGCG
** ** *
26586938 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-AATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
26587003 TGCGA
65 TGCGA
26587008 GTTGATTATA
Statistics
Matches: 61, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
81 16 0.26
82 45 0.74
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAAATGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAAATGATCATGCG
Found at i:26587012 original size:27 final size:27
Alignment explanation
Indices: 26586856--26587033 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
26586846 TAAACTGTAC
*
26586856 AGCACTAAGTGTGCGAAATGACTATGT
1 AGCACTAAGTGTGCGAAATGATTATGT
* *
26586883 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAAATGATTATGT
* *
26586909 ATGCACTAAGTGTGCGAAATGATCATGC
1 A-GCACTAAGTGTGCGAAATGATTATGT
* ** *
26586937 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-AATGATTATGT
** *
26586965 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAAATGATTATGT
* ** *
26586992 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAAATGATTATGT
*
26587019 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26587034 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 107 0.84
28 21 0.16
ACGTcount: A:0.28, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAAATGATTATGT
Found at i:26587024 original size:82 final size:81
Alignment explanation
Indices: 26586853--26587033 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
26586843 GATTAAACTG
* *
26586853 TACAGCACTAAGTGTGCGAAATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAAATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26586918 GTGTGCGAAATGATCA
66 GTGTGCGAAATGATCA
* * ** ** *
26586934 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-AATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
** *
26586998 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAAATGATCA
* *
26587016 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26587034 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAAATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAAATGATCA
Found at i:26592859 original size:43 final size:43
Alignment explanation
Indices: 26592712--26592859 Score: 149
Period size: 44 Copynumber: 3.4 Consensus size: 43
26592702 TATGTGTTTT
* *
26592712 CGTGTAAGACCACATTTGGGACATTGGCATCGAT-TTATGATTTA
1 CGTGTAAGACCACATCTGGGACAGTGGCATCGATATT-TGA-TTA
* ** * *
26592756 CATGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTA
* * *
26592798 TGTGTAAGACC-CTATCTGGGACAGTGGCATTGATATTTTATTA
1 CGTGTAAGACCAC-ATCTGGGACAGTGGCATCGATATTTGATTA
*
26592841 CGTGTAAGACCACGTCTGG
1 CGTGTAAGACCACATCTGG
26592860 AACGTTGGCA
Statistics
Matches: 85, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
42 27 0.32
43 27 0.32
44 31 0.36
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACAGTGGCATCGATATTTGATTA
Found at i:26592872 original size:43 final size:43
Alignment explanation
Indices: 26592712--26592870 Score: 162
Period size: 43 Copynumber: 3.7 Consensus size: 43
26592702 TATGTGTTTT
*
26592712 CGTGTAAGACCACATTTGGGACATTGGCATCGAT-TTATGATTTA
1 CGTGTAAGACCACATCTGGGACATTGGCATCGATATT-TGA-TTA
* ** *
26592756 CATGTAAGACCATGTCTGGGACATTGGCATCG-TATTTGATTT
1 CGTGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTA
* * * *
26592798 TGTGTAAGACC-CTATCTGGGACAGTGGCATTGATATTTTATTA
1 CGTGTAAGACCAC-ATCTGGGACATTGGCATCGATATTTGATTA
* * *
26592841 CGTGTAAGACCACGTCTGGAACGTTGGCAT
1 CGTGTAAGACCACATCTGGGACATTGGCAT
26592871 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 18, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
42 27 0.29
43 35 0.38
44 31 0.33
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (43 bp):
CGTGTAAGACCACATCTGGGACATTGGCATCGATATTTGATTA
Found at i:26605358 original size:20 final size:20
Alignment explanation
Indices: 26605333--26605381 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
26605323 GCTAATTTGG
** *
26605333 TATCGATACTTTTATAAAAA
1 TATCGATACTCGTAGAAAAA
*
26605353 TATCGATACTCGTGGAAAAA
1 TATCGATACTCGTAGAAAAA
26605373 TATCGATAC
1 TATCGATAC
26605382 CACGAGAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (20 bp):
TATCGATACTCGTAGAAAAA
Found at i:26607540 original size:33 final size:33
Alignment explanation
Indices: 26607503--26607568 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
26607493 GCTCCTGGCC
*
26607503 AAAAAGTATCAATACCATTTGGCCATGTATTGA
1 AAAAAGTATCAATACCATTTGGCCACGTATTGA
26607536 AAAAAGTATCAATACCATTTGGCCACGTATTGA
1 AAAAAGTATCAATACCATTTGGCCACGTATTGA
26607569 TAATTTTTTG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (33 bp):
AAAAAGTATCAATACCATTTGGCCACGTATTGA
Found at i:26608964 original size:27 final size:27
Alignment explanation
Indices: 26608926--26608982 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
26608916 ATTGAAAAAG
26608926 TATGAAAATTATGTTAAAGTAGAGTTT
1 TATGAAAATTATGTTAAAGTAGAGTTT
26608953 TATGAAAATTATGTTAAAGTAGAGTTT
1 TATGAAAATTATGTTAAAGTAGAGTTT
26608980 TAT
1 TAT
26608983 TATATAAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (27 bp):
TATGAAAATTATGTTAAAGTAGAGTTT
Found at i:26609912 original size:33 final size:34
Alignment explanation
Indices: 26609847--26609912 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 34
26609837 GAAACAGAAG
* *
26609847 CAGTGTGGGCCTGAGACCATTCTAGTAATAGTAT
1 CAGTGTGGGCCTAAGACCATTATAGTAATAGTAT
*
26609881 CAGTG-GGGCCTAAGCCCATTATAG-AATTAGTA
1 CAGTGTGGGCCTAAGACCATTATAGTAA-TAGTA
26609913 AGTATGCAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 2 0.07
33 21 0.75
34 5 0.18
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (34 bp):
CAGTGTGGGCCTAAGACCATTATAGTAATAGTAT
Found at i:26616227 original size:46 final size:44
Alignment explanation
Indices: 26616177--26616295 Score: 125
Period size: 46 Copynumber: 2.6 Consensus size: 44
26616167 CGAGACCTAT
26616177 TGTAAGACATGTCTAGGG-CATGCATCAGCCT-CGAGATGTAAGCCAA
1 TGTAAGACATGTCT-GGGACATGCATC-GCCTGCGAGATGT--GCCAA
* * *
26616223 TGTAAGACATCTCTGGGACATGCATCGGCTGCGAGATGTGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGCCTGCGAGATGTGCCAA
* *
26616267 TGTAAGACCATGTTTGAGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
26616296 GCACGTATAG
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
44 11 0.17
45 17 0.27
46 35 0.56
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGCCTGCGAGATGTGCCAA
Found at i:26616324 original size:48 final size:50
Alignment explanation
Indices: 26616269--26616379 Score: 154
Period size: 48 Copynumber: 2.3 Consensus size: 50
26616259 TGTGTCAATG
* *
26616269 TAAGACCATGTTTGAGACATGGCATCGGCACGTATA-GAG-GAGTCAGTA
1 TAAGACCATGTTTGAGACATGGCATCGGCACGGATATGAGAGAGCCAGTA
* * * *
26616317 TAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCCAGTG
1 TAAGACCATGTTTGAGACATGGCATCGGCACGGATATGAGAGAGCCAGTA
26616367 TAAGACCATGTTT
1 TAAGACCATGTTT
26616380 AGGAACATGG
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 33 0.61
49 2 0.04
50 19 0.35
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (50 bp):
TAAGACCATGTTTGAGACATGGCATCGGCACGGATATGAGAGAGCCAGTA
Found at i:26619910 original size:28 final size:29
Alignment explanation
Indices: 26619874--26619959 Score: 97
Period size: 28 Copynumber: 3.0 Consensus size: 29
26619864 AATATCTTTC
*
26619874 ATATAGCCCATTAGGCCC-AATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
* *
26619902 A-AGTGGCCCACTAGGCCCAAATCACATTC
1 ATA-TGGCCCATTAGGCCCAAATCACATTT
**
26619931 ATATGG-AAATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
26619959 A
1 A
26619960 CAGTCATGTT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
27 1 0.02
28 33 0.69
29 13 0.27
30 1 0.02
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:26623649 original size:46 final size:46
Alignment explanation
Indices: 26623582--26623757 Score: 193
Period size: 46 Copynumber: 3.8 Consensus size: 46
26623572 TGTAACCCAC
* *
26623582 CCATAAGCGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACGTTCGCAT
* *
26623628 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-G--GAC--GTTCGCAT
* *
26623678 CTCA-CA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
26623721 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26623758 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 8, Indels: 24
0.77 0.06 0.17
Matches are distributed among these distances:
42 4 0.04
43 5 0.05
44 2 0.02
45 2 0.02
46 59 0.54
47 26 0.24
49 2 0.02
50 5 0.05
51 5 0.05
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:26623704 original size:93 final size:93
Alignment explanation
Indices: 26623591--26623760 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
26623581 CCCATAAGCG
* *
26623591 AACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAG-TTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26623655 CGAGTTCAGATGCCTAGTTACATCTCACA
65 CGAGTTCAGATGCCTAGTTACATCTCACA
26623684 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
26623749 GAGTTCGGATGC
66 GAGTTCAGATGC
26623761 TCAACCATCC
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGTTCAGATGCCTAGTTACATCTCACA
Found at i:26630810 original size:46 final size:46
Alignment explanation
Indices: 26630690--26630816 Score: 209
Period size: 46 Copynumber: 2.8 Consensus size: 46
26630680 TGTAACCCGC
* * * **
26630690 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
26630736 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
26630782 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
26630817 GATGCTCAAC
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
Found at i:26635583 original size:24 final size:23
Alignment explanation
Indices: 26635511--26635615 Score: 140
Period size: 23 Copynumber: 4.4 Consensus size: 23
26635501 TAGCTTGTAT
26635511 GAGCTTACTGTTTTAGCTCAGAA
1 GAGCTTACTGTTTTAGCTCAGAA
*
26635534 GAGCTTACTATTTTAGCTCAGAA
1 GAGCTTACTGTTTTAGCTCAGAA
26635557 GAGCTTACTGTTTTCAGCTCA-ATA
1 GAGCTTACTGTTTT-AGCTCAGA-A
* *
26635581 GAGCTTACTGTTATCAGCTCTTGAA
1 GAGCTTACTGTT-TTAGCTC-AGAA
26635606 GAGCTTACTG
1 GAGCTTACTG
26635616 GCCATGTCTC
Statistics
Matches: 73, Mismatches: 4, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
23 36 0.49
24 24 0.33
25 12 0.16
26 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (23 bp):
GAGCTTACTGTTTTAGCTCAGAA
Found at i:26641661 original size:47 final size:47
Alignment explanation
Indices: 26641607--26641964 Score: 581
Period size: 47 Copynumber: 7.6 Consensus size: 47
26641597 TATTTGAATA
*
26641607 AATGTGAAAGTGTATATATGTGATAAGTCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
26641654 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
26641701 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGACGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
26641750 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
26641797 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
26641844 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
26641891 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
26641938 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26641965 TCCCGAAGGG
Statistics
Matches: 294, Mismatches: 15, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 250 0.85
49 44 0.15
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:26647357 original size:13 final size:13
Alignment explanation
Indices: 26647339--26647363 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26647329 GAATTGATAT
26647339 GTGTGAAAATTTC
1 GTGTGAAAATTTC
26647352 GTGTGAAAATTT
1 GTGTGAAAATTT
26647364 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:26648592 original size:42 final size:41
Alignment explanation
Indices: 26648530--26648636 Score: 133
Period size: 42 Copynumber: 2.5 Consensus size: 41
26648520 TCGTGATTTA
*
26648530 CGTGTAAGACCATGTCTGGGACATTGGCATCGTATATGAGTT
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCG-ATATGAGTT
* * *
26648572 CGTGTAAGACCCTGTTTGGGACAGTGGCATCGATATGTGATT
1 CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATGAG-TT
* *
26648614 ACATGTAAGACCACGTCTGGGAC
1 -CGTGTAAGACCATGTCTGGGAC
26648637 GTTAGCGTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
41 6 0.11
42 31 0.56
43 18 0.33
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (41 bp):
CGTGTAAGACCATGTCTGGGACAGTGGCATCGATATGAGTT
Found at i:26648635 original size:43 final size:44
Alignment explanation
Indices: 26648474--26648636 Score: 151
Period size: 43 Copynumber: 3.8 Consensus size: 44
26648464 ATAGGATTTT
* * *
26648474 GATATGTGA-TTTCATATAAGACCACATCTGGGAC-GTTGGCATC
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGACAG-TGGCATC
* * * * *
26648517 AAT-TCGTGATTTACGTGTAAGACCATGTCTGGGACATTGGCATC
1 GATAT-GTGAGTTACATGTAAGACCACGTCTGGGACAGTGGCATC
* * *
26648561 G-TATATGAGTT-CGTGTAAGACC-CTGTTTGGGACAGTGGCATC
1 GATATGTGAGTTACATGTAAGACCAC-GTCTGGGACAGTGGCATC
26648603 GATATGTGA-TTACATGTAAGACCACGTCTGGGAC
1 GATATGTGAGTTACATGTAAGACCACGTCTGGGAC
26648637 GTTAGCGTTG
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
42 31 0.32
43 36 0.38
44 29 0.30
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (44 bp):
GATATGTGAGTTACATGTAAGACCACGTCTGGGACAGTGGCATC
Found at i:26656633 original size:33 final size:33
Alignment explanation
Indices: 26656592--26656656 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
26656582 AGATAATAAA
26656592 GATTTTAATTTTTTAAATATTATCATTTCAATT
1 GATTTTAATTTTTTAAATATTATCATTTCAATT
26656625 GATTTTAATTTTTTAAATATTATCATTTCAAT
1 GATTTTAATTTTTTAAATATTATCATTTCAAT
26656657 CAAAATCTCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.06, G:0.03, T:0.57
Consensus pattern (33 bp):
GATTTTAATTTTTTAAATATTATCATTTCAATT
Found at i:26657758 original size:10 final size:10
Alignment explanation
Indices: 26657743--26657772 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
26657733 CAGGCCTGCC
26657743 CTTCGTTTTG
1 CTTCGTTTTG
26657753 CTTCGTTTTG
1 CTTCGTTTTG
26657763 CTTCGTTTTG
1 CTTCGTTTTG
26657773 TGCCGATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.20, T:0.60
Consensus pattern (10 bp):
CTTCGTTTTG
Found at i:26660209 original size:19 final size:19
Alignment explanation
Indices: 26660185--26660237 Score: 106
Period size: 19 Copynumber: 2.8 Consensus size: 19
26660175 AAATTTCAAT
26660185 CAGGTATCGATACCATAGC
1 CAGGTATCGATACCATAGC
26660204 CAGGTATCGATACCATAGC
1 CAGGTATCGATACCATAGC
26660223 CAGGTATCGATACCA
1 CAGGTATCGATACCA
26660238 ATTTGAGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (19 bp):
CAGGTATCGATACCATAGC
Found at i:26669864 original size:16 final size:16
Alignment explanation
Indices: 26669843--26669877 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
26669833 GATGAAGATA
26669843 TAGAGATATATTTGTG
1 TAGAGATATATTTGTG
26669859 TAGAGATATATTTGTG
1 TAGAGATATATTTGTG
26669875 TAG
1 TAG
26669878 CCTCTGGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (16 bp):
TAGAGATATATTTGTG
Found at i:26675799 original size:61 final size:61
Alignment explanation
Indices: 26675680--26675799 Score: 154
Period size: 60 Copynumber: 2.0 Consensus size: 61
26675670 CTATACAAAA
* * *
26675680 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAGT
* * *
26675741 ATCAGAG-TATACTGGGCC-TAGCCCATATCAGTGTCAATCTAGGCCGTAGCCCTATTACA
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCC-ATTACA
26675800 AGTCGAGATA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
60 31 0.61
61 20 0.39
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (61 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTAGGCCATAGCCCATTACAGT
Found at i:26680613 original size:29 final size:28
Alignment explanation
Indices: 26680578--26680684 Score: 105
Period size: 28 Copynumber: 3.8 Consensus size: 28
26680568 CTTCAGATTC
26680578 TGCCACAAAAGCACATT-TTTAACAGAATT
1 TGCCAC-AAAG-ACATTCTTTAACAGAATT
26680607 TGCCAC-AAGACATTCCTTTAACAGAGA-T
1 TGCCACAAAGACATT-CTTTAACAGA-ATT
* *
26680635 AGCCACAAAGGCATTCCTTTAACAGAATT
1 TGCCACAAAGACATT-CTTTAACAGAATT
*
26680664 TGCCAC-AAGGCATTCCTTTAA
1 TGCCACAAAGACATT-CTTTAA
26680685 TAGGGATAGC
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
26 5 0.07
27 3 0.04
28 31 0.44
29 31 0.44
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.26
Consensus pattern (28 bp):
TGCCACAAAGACATTCTTTAACAGAATT
Found at i:26680713 original size:29 final size:29
Alignment explanation
Indices: 26680623--26680931 Score: 197
Period size: 29 Copynumber: 10.8 Consensus size: 29
26680613 AAGACATTCC
*
26680623 TTTAACAGAGATAGCCACAAAGGCATTCC-
1 TTTAACAGAGATAGCCACAAAGG-AATCCT
* *
26680652 TTTAACAGA-ATTTGCCAC-AAGGCATTCC-
1 TTTAACAGAGA-TAGCCACAAAGG-AATCCT
* *
26680680 TTTAATAGGGATAGCCACAAAGGAATCCT
1 TTTAACAGAGATAGCCACAAAGGAATCCT
** *
26680709 TTTAATTGAGATAGCCACAAAGGCATTCC-
1 TTTAACAGAGATAGCCACAAAGG-AATCCT
* **
26680738 TTTAACAGAGATAGCCACAAAGGTATTTT
1 TTTAACAGAGATAGCCACAAAGGAATCCT
* **
26680767 TTTAACAAAGATAAACACAAA-GACATCCT
1 TTTAACAGAGATAGCCACAAAGGA-ATCCT
* ** *
26680796 TTCAACAGAGATAGCCACAAAGGCTTTCT
1 TTTAACAGAGATAGCCACAAAGGAATCCT
* ** *
26680825 TAT-ACTAGAGATAGCCACAAAGGCTTCCA
1 TTTAAC-AGAGATAGCCACAAAGGAATCCT
* * ** *
26680854 TTTAACAGAGATCGCCAAAAAGGCTTCCA
1 TTTAACAGAGATAGCCACAAAGGAATCCT
* * ** **
26680883 TATAACAGAGATCGCTGCAAAGGCTTCCT
1 TTTAACAGAGATAGCCACAAAGGAATCCT
26680912 TTT---AGAGATAGCCACAAAGG
1 TTTAACAGAGATAGCCACAAAGG
26680932 CTCACTTATA
Statistics
Matches: 227, Mismatches: 43, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
26 14 0.06
28 32 0.14
29 174 0.77
30 7 0.03
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (29 bp):
TTTAACAGAGATAGCCACAAAGGAATCCT
Found at i:26680713 original size:86 final size:87
Alignment explanation
Indices: 26680613--26680932 Score: 282
Period size: 87 Copynumber: 3.7 Consensus size: 87
26680603 AATTTGCCAC
*
26680613 AAGACATTCC-TTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGA-ATTTGCCAC-AAGGC
1 AAGACA-TCCTTTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGAGA-TAGCCACAAAGGC
* ** **
26680675 ATTCCTTTAATAGGGATAGCCACA
64 ATTCCTTTAACAAAGATAAACACA
** *
26680699 AAGGA-ATCCTTTTAATTGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGTA
1 AA-GACATCCTTTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGCA
**
26680763 TTTTTTTAACAAAGATAAACACA
65 TTCCTTTAACAAAGATAAACACA
* *
26680786 AAGACATCCTTTCAACAGAGATAGCCACAAAGGC-TTTC-TTATACTAGAGATAGCCACAAAGGC
1 AAGACATCCTTTTAACAGAGATAGCCACAAAGGCATTCCTTTA-AC-AGAGATAGCCACAAAGGC
* *** *
26680849 -TTCCATTTAACAGAGATCGCCAAA
64 ATTCC-TTTAACAAAGATAAACACA
* * * * * ** *
26680873 AAGGCTTCCATATAACAGAGATCGCTGCAAAGGC-TTCCTTT--TAGAGATAGCCACAAAGGC
1 AAGACATCCTTTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGC
26680933 TCACTTATAT
Statistics
Matches: 192, Mismatches: 33, Indels: 20
0.78 0.13 0.08
Matches are distributed among these distances:
84 18 0.09
85 6 0.03
86 54 0.28
87 112 0.58
88 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.24
Consensus pattern (87 bp):
AAGACATCCTTTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGCAT
TCCTTTAACAAAGATAAACACA
Found at i:26680757 original size:58 final size:58
Alignment explanation
Indices: 26680594--26680931 Score: 284
Period size: 58 Copynumber: 5.9 Consensus size: 58
26680584 AAAAGCACAT
* * *
26680594 TTTTAACAGA-ATTTGCCAC-AAGACATTCCTTTAACAGAGATAGCCACAAAGGCATTCC
1 TTTTAACAGAGA-TAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGG-AATCC
* * *
26680652 -TTTAACAGA-ATTTGCCAC-AAGGCATTCCTTTAATAGGGATAGCCACAAAGGAATCC
1 TTTTAACAGAGA-TAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGAATCC
** * **
26680708 TTTTAATTGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGTATTT
1 TTTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGAATCC
* ** * ** *
26680766 TTTTAACAAAGATAAACACAAAGACA-TCCTTTCAACAGAGATAGCCACAAAGGCTTTC
1 TTTTAACAGAGATAGCCACAAAGGCATTCCTTT-AACAGAGATAGCCACAAAGGAATCC
* * * **
26680824 TTAT-ACTAGAGATAGCCACAAAGGC-TTCCATTTAACAGAGATCGCCAAAAAGGCTTCC
1 TTTTAAC-AGAGATAGCCACAAAGGCATTCC-TTTAACAGAGATAGCCACAAAGGAATCC
* * * ** *
26680882 ATATAACAGAGATCGCTGCAAAGGC-TTCCTTT--TAGAGATAGCCACAAAGG
1 TTTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGG
26680932 CTCACTTATA
Statistics
Matches: 236, Mismatches: 36, Indels: 19
0.81 0.12 0.07
Matches are distributed among these distances:
55 15 0.06
56 4 0.02
57 72 0.31
58 140 0.59
59 5 0.02
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.25
Consensus pattern (58 bp):
TTTTAACAGAGATAGCCACAAAGGCATTCCTTTAACAGAGATAGCCACAAAGGAATCC
Found at i:26685963 original size:64 final size:64
Alignment explanation
Indices: 26685883--26686066 Score: 174
Period size: 67 Copynumber: 2.8 Consensus size: 64
26685873 AGACATTATG
* *
26685883 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGCTACGAGATAA
* * * * * * * *
26685947 ATGTAGCTAGGTCGCATGTGTGGTTCCAAGTGAAGGACACCATCTACACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAAACAAGAGAGCTACGAGAT
26686012 AA
63 AA
* * * * **
26686014 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGC
26686067 CGAACTATAT
Statistics
Matches: 94, Mismatches: 22, Indels: 9
0.75 0.18 0.07
Matches are distributed among these distances:
63 18 0.19
64 21 0.22
65 8 0.09
66 16 0.17
67 29 0.31
68 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAAACAAGAGAGCTACGAGATAA
Found at i:26687552 original size:94 final size:92
Alignment explanation
Indices: 26687391--26687747 Score: 359
Period size: 94 Copynumber: 3.8 Consensus size: 92
26687381 TTGTGTGCCG
* * * * *
26687391 GTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGACAATGTAAGACCATGTCTGGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCATA-TATGAGAGCCAGTGTAAGACCATGTCTGGG
** *
26687456 ACATGGCATCAACATCCAGACGAAG-GCTA
65 ACATGGCATCGGCATCAAGA-G-AGTGCTA
* *
26687485 GTGTAAGACATGTCTGGGACATGCATCAGCCATACTATGATAGCCAGTGTAAGACCATGTCTAGG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCATA-TATGAGAGCCAGTGTAAGACCATGTCTGGG
*
26687550 ACATGGCATCGGCA-CTGAGATGAGTGCTA
65 ACATGGCATCGGCATC-AAGA-GAGTGCTA
* ** * * * * *
26687579 GTGTAGGACATGTCTGGGACATGCATTGGCC-TCGAAAAAGATAGCCAGTGTAAGA-CGTGTTTG
1 GTGTAAGACATGTCTGGGACATGCATCAGCCAT---ATATGAGAGCCAGTGTAAGACCATGTCTG
*
26687642 GGACAT-GCATCGGC-T-AAGAGTTGTGCTA
63 GGACATGGCATCGGCATCAAGAG-AGTGCTA
*
26687670 GTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCCAGTGTAAGACCATGTCTG
1 GTGTAAGACATGTCTGGGACATGCATCAG--C-CATATATGAGAGCCAGTGTAAGACCATGTCTG
26687735 GGACATGGCATCG
63 GGACATGGCATCG
26687748 ACAATATATC
Statistics
Matches: 220, Mismatches: 30, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
90 1 0.00
91 35 0.16
92 17 0.08
93 25 0.11
94 123 0.56
95 18 0.08
96 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (92 bp):
GTGTAAGACATGTCTGGGACATGCATCAGCCATATATGAGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGGCATCAAGAGAGTGCTA
Found at i:26687629 original size:47 final size:46
Alignment explanation
Indices: 26687391--26687747 Score: 217
Period size: 47 Copynumber: 7.6 Consensus size: 46
26687381 TTGTGTGCCG
* ** ** * *
26687391 GTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGACA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTGAAAATGATAGCCA
* ** * ** * * *
26687437 ATGTAAGACCATGTCTGGGACATGGCATCAACATCCAGACGA-AGGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTGAAAATGATA-GCCA
* **
26687485 GTGTAAGACATGTCTGGGACATGCATCAGCCAT-ACTATGATAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCC-TGAAAATGATAGCCA
* * *
26687531 GTGTAAGACCATGTCTAGGACATGGCATCGGCACTG-AGATGAGT-GCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTGAAAATGA-TAGCCA
* * *
26687579 GTGTAGGACATGTCTGGGACATGCATTGGCCTCGAAAAAGATAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCT-GAAAATGATAGCCA
* * * *
26687626 GTGTAAGACGTGTTTGGGACATGCATCGG-CT-AAGAGTTG-T-GCTA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTGAA-A-ATGATAGCCA
* * * * *
26687670 GTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGC-C-TGAAAATGATAGCCA
26687718 GTGTAAGACCATGTCTGGGACATGGCATCG
1 GTGTAAGA-CATGTCTGGGACAT-GCATCG
26687748 ACAATATATC
Statistics
Matches: 240, Mismatches: 48, Indels: 42
0.73 0.15 0.13
Matches are distributed among these distances:
44 31 0.13
45 4 0.02
46 43 0.18
47 89 0.37
48 52 0.22
49 16 0.07
50 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (46 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTGAAAATGATAGCCA
Found at i:26690968 original size:84 final size:84
Alignment explanation
Indices: 26690874--26691042 Score: 302
Period size: 84 Copynumber: 2.0 Consensus size: 84
26690864 ACAAAACATG
* *
26690874 TTAATCTAAAACATATCTTTAATATTTCATCATCAAACATCACAAAACACAAATATTCATCAATG
1 TTAATCTAAAACATAACCTTAATATTTCATCATCAAACATCACAAAACACAAATATTCATCAATG
26690939 ACATAACTCAAAACATTCA
66 ACATAACTCAAAACATTCA
*
26690958 TTAATGTAAAACATAACCTTAATATTTCATCATCAAACATCACAAAACACAAATATTCATCAATG
1 TTAATCTAAAACATAACCTTAATATTTCATCATCAAACATCACAAAACACAAATATTCATCAATG
*
26691023 GCATAACTCAAAACATTCA
66 ACATAACTCAAAACATTCA
26691042 T
1 T
26691043 CAAAATCAGA
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
84 81 1.00
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.29
Consensus pattern (84 bp):
TTAATCTAAAACATAACCTTAATATTTCATCATCAAACATCACAAAACACAAATATTCATCAATG
ACATAACTCAAAACATTCA
Found at i:26695699 original size:40 final size:40
Alignment explanation
Indices: 26695653--26695836 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
26695643 CTCGCACAAG
* *
26695653 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
26695693 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
26695733 GCCTTCGGGTCTTAGCCCGAATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
26695773 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
26695813 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
26695837 CATTCGAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:26703779 original size:23 final size:23
Alignment explanation
Indices: 26703749--26703794 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
26703739 CGGATACAGC
*
26703749 AACTCGCACAAATGCCTTCGGGT
1 AACTCGCACAAATACCTTCGGGT
26703772 AACTCGCACAAATACCTTCGGGT
1 AACTCGCACAAATACCTTCGGGT
26703795 CTTAGCCCGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (23 bp):
AACTCGCACAAATACCTTCGGGT
Found at i:26703813 original size:63 final size:63
Alignment explanation
Indices: 26703709--26703834 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
26703699 CGGATATAAC
* *
26703709 AACTCGTACAAATGCCTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGT
1 AACTCGCACAAATACCTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGT
* *
26703772 AACTCGCACAAATACCTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGT
1 AACTCGCACAAATACCTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGT
26703835 CTTAGCCCGG
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.26, C:0.31, G:0.21, T:0.21
Consensus pattern (63 bp):
AACTCGCACAAATACCTTCGGGTCCTAGCCCGGATACAGCAACTCGCACAAATGCCTTCGGGT
Found at i:26717226 original size:40 final size:40
Alignment explanation
Indices: 26717180--26717363 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
26717170 CTCGCACAAG
* *
26717180 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
26717220 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
26717260 GCCTTCGGGTCTTAGCCCGAATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
26717300 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
*
26717340 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
26717364 CATTCGAATA
Statistics
Matches: 125, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 123 0.98
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:26725328 original size:40 final size:40
Alignment explanation
Indices: 26725245--26725464 Score: 243
Period size: 40 Copynumber: 5.5 Consensus size: 40
26725235 ACCCAAGTAT
** * *
26725245 CTTCGGGAT-TTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGG-TCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
26725283 CTTCGGGTCTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
26725323 CTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
26725363 CTTCGGGTCTTAGCCCGGATATAG-CAACTCA-CACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGTC-ACT-AGCACAAATGC
* * * * *
26725403 CTTCGGATCTTAGTCCAGATATAGTCACTAGCATAAAAGC
1 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
26725443 CTTTGGGACTTAGCCCGGATAT
1 CTTCGGGTCTTAGCCCGGATAT
26725465 CATTCGAATA
Statistics
Matches: 153, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
37 1 0.01
38 11 0.07
39 17 0.11
40 122 0.80
41 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26728364 original size:22 final size:22
Alignment explanation
Indices: 26728339--26728381 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26728329 CTACGATATT
* *
26728339 TATGGCCTTTAGCCATTCTGTC
1 TATGGCATTGAGCCATTCTGTC
*
26728361 TATGGCATTGAGCCGTTCTGT
1 TATGGCATTGAGCCATTCTGT
26728382 TGACTTAGTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.14, C:0.23, G:0.23, T:0.40
Consensus pattern (22 bp):
TATGGCATTGAGCCATTCTGTC
Found at i:26729985 original size:18 final size:18
Alignment explanation
Indices: 26729934--26729986 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 18
26729924 CGCTAAGGAC
26729934 TAAATTAGAAATCAAAATTAT
1 TAAA-TAGAAAT--AAATTAT
*
26729955 T-AATAGATGATAAATTAT
1 TAAATAGA-AATAAATTAT
26729973 TAAATAGAAATAAA
1 TAAATAGAAATAAA
26729987 AAACATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 13 0.46
19 10 0.36
20 4 0.14
21 1 0.04
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (18 bp):
TAAATAGAAATAAATTAT
Found at i:26734427 original size:16 final size:15
Alignment explanation
Indices: 26734390--26734427 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
26734380 TTCATTACCA
*
26734390 TTCAGACCAAGATTT
1 TTCATACCAAGATTT
26734405 TTCATACCAAGATTT
1 TTCATACCAAGATTT
26734420 TCTCATAC
1 T-TCATAC
26734428 AATCAGCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 15 0.71
16 6 0.29
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.37
Consensus pattern (15 bp):
TTCATACCAAGATTT
Found at i:26740661 original size:22 final size:21
Alignment explanation
Indices: 26740621--26740661 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
26740611 ATAGTTTTAT
*
26740621 TTTATTACTTTTAATTTATCA
1 TTTATTACTTTTAACTTATCA
*
26740642 TTTATTTACTTTTTACTTAT
1 TTTA-TTACTTTTAACTTAT
26740662 TACCCTCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.24, C:0.10, G:0.00, T:0.66
Consensus pattern (21 bp):
TTTATTACTTTTAACTTATCA
Found at i:26753807 original size:47 final size:49
Alignment explanation
Indices: 26753704--26753834 Score: 150
Period size: 47 Copynumber: 2.8 Consensus size: 49
26753694 CATAGGTTAT
*
26753704 AATGCCGATGCCATGCCCCA-AACATGGTCTTACAC-AAGCTCATCCATC
1 AATGCCGATGCCATGTCCCAGAA-ATGGTCTTACACTAAGCTCATCCATC
*
26753752 AA-GTCGATGCCATGTCCCAGAAAT-GTCTTACACTAA-CTC-TCGTC-TC
1 AATGCCGATGCCATGTCCCAGAAATGGTCTTACACTAAGCTCATC--CATC
* *
26753798 AATGCCGATGCCATGTTCCAGACATGGTCTTACACTA
1 AATGCCGATGCCATGTCCCAGAAATGGTCTTACACTA
26753835 GCATACAAAT
Statistics
Matches: 72, Mismatches: 5, Indels: 12
0.81 0.06 0.13
Matches are distributed among these distances:
45 2 0.03
46 16 0.22
47 39 0.54
48 15 0.21
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.25
Consensus pattern (49 bp):
AATGCCGATGCCATGTCCCAGAAATGGTCTTACACTAAGCTCATCCATC
Found at i:26757161 original size:17 final size:15
Alignment explanation
Indices: 26757139--26757172 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
26757129 TAATTAGGTG
26757139 AAAAGTACTAAATAGTA
1 AAAAGTA-TAAA-AGTA
26757156 AAAAGTATAAAAGTA
1 AAAAGTATAAAAGTA
26757171 AA
1 AA
26757173 GTTCCATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 4 0.24
17 7 0.41
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.21
Consensus pattern (15 bp):
AAAAGTATAAAAGTA
Found at i:26759443 original size:18 final size:20
Alignment explanation
Indices: 26759406--26759447 Score: 70
Period size: 18 Copynumber: 2.2 Consensus size: 20
26759396 TTGGAATGCA
26759406 ATGGTTGATAAAACAAAAAT
1 ATGGTTGATAAAACAAAAAT
26759426 ATGGTTGAT-AAA-AAAAAT
1 ATGGTTGATAAAACAAAAAT
26759444 ATGG
1 ATGG
26759448 AAAAAAGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.45
19 3 0.14
20 9 0.41
ACGTcount: A:0.52, C:0.02, G:0.19, T:0.26
Consensus pattern (20 bp):
ATGGTTGATAAAACAAAAAT
Found at i:26777209 original size:48 final size:45
Alignment explanation
Indices: 26777098--26777199 Score: 152
Period size: 45 Copynumber: 2.2 Consensus size: 45
26777088 AGTAATGATG
*
26777098 AGAAACAAAAAAAAAAAAAAGCTTATGTTGTTCTTGCCGAATAGA
1 AGAAAGAAAAAAAAAAAAAAGCTTATGTTGTTCTTGCCGAATAGA
26777143 AGAAAGAAAAAAAAAAAAAAGCTCTCATGTTGGTTCTTGGCCGAAT-GA
1 AGAAAGAAAAAAAAAAAAAAGCT-T-ATGTT-GTTCTT-GCCGAATAGA
26777191 AGAAAGAAA
1 AGAAAGAAA
26777200 GAAGGAAAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 5
0.90 0.02 0.09
Matches are distributed among these distances:
45 22 0.42
46 1 0.02
47 5 0.10
48 17 0.33
49 7 0.13
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.20
Consensus pattern (45 bp):
AGAAAGAAAAAAAAAAAAAAGCTTATGTTGTTCTTGCCGAATAGA
Found at i:26778419 original size:40 final size:40
Alignment explanation
Indices: 26778316--26778562 Score: 349
Period size: 40 Copynumber: 6.2 Consensus size: 40
26778306 GGATTGATAA
* * * *
26778316 CCGGGCTAAGTCCCAAAGGAATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
26778356 CCGGACTAAG-CCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
26778395 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26778435 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26778475 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26778515 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
26778555 CC-GGCTAA
1 CCGGGCTAA
26778563 ACTCCGAAGG
Statistics
Matches: 190, Mismatches: 14, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 39 0.21
40 151 0.79
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26780697 original size:43 final size:42
Alignment explanation
Indices: 26780633--26780748 Score: 117
Period size: 42 Copynumber: 2.7 Consensus size: 42
26780623 TAAATACAAT
* * * *
26780633 GCCAACGTCCCAGACG-TGGTCTTACATGTAATCAAACATCGAT
1 GCCAATGTCCCAGA-GAGGGTCTTACACGTAATCAAACA-CGAA
* * * * *
26780676 GCCACTGTCCCAGATAGGGTCTTGCACGAAATCATACACGAA
1 GCCAATGTCCCAGAGAGGGTCTTACACGTAATCAAACACGAA
*
26780718 GCCAATGTCCCAGAGATGGTCTTACACGTAA
1 GCCAATGTCCCAGAGAGGGTCTTACACGTAA
26780749 AACAGAAGTC
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 29 0.50
43 29 0.50
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (42 bp):
GCCAATGTCCCAGAGAGGGTCTTACACGTAATCAAACACGAA
Found at i:26780739 original size:42 final size:43
Alignment explanation
Indices: 26780633--26780789 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
26780623 TAAATACAAT
* * * *
26780633 GCCAACGTCCCAGACG-TGGTCTTACATGTAATCAAACATCGAT
1 GCCAATGTCCCAGA-GATGGTCTTACACGAAATCAAACATCGAA
* * * * *
26780676 GCCACTGTCCCAGATAGGGTCTTGCACGAAATCATACA-CGAA
1 GCCAATGTCCCAGAGATGGTCTTACACGAAATCAAACATCGAA
* * *
26780718 GCCAATGTCCCAGAGATGGTCTTACACGTAAAACAGAA-GTCGAT
1 GCCAATGTCCCAGAGATGGTCTTACACG-AAATCA-AACATCGAA
* *
26780762 GCCAACGTCCCAAACG-TGGTCTTACACG
1 GCCAATGTCCCAGA-GATGGTCTTACACG
26780790 CAAAATAGAT
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 27 0.30
43 34 0.38
44 28 0.31
45 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.20
Consensus pattern (43 bp):
GCCAATGTCCCAGAGATGGTCTTACACGAAATCAAACATCGAA
Found at i:26780773 original size:44 final size:42
Alignment explanation
Indices: 26780631--26780794 Score: 124
Period size: 44 Copynumber: 3.8 Consensus size: 42
26780621 AGTAAATACA
* *
26780631 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAA-ACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAA--AACAAATCG
* * *
26780674 ATGCC-ACTGTCCCAGATAG-GGTCTTGCACG-AAATCATACA-CG
1 ATGCCAAC-GTCCCAGA-CGTGGTCTTACACGTAAAACA-A-ATCG
* *
26780716 AAGCCAATGTCCCAGA-GATGGTCTTACACGTAAAACAGAAGTCG
1 ATGCCAACGTCCCAGACG-TGGTCTTACACGTAAAACA-AA-TCG
* *
26780760 ATGCCAACGTCCCAAACGTGGTCTTACACGCAAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAA
26780795 TAGATATCGG
Statistics
Matches: 95, Mismatches: 14, Indels: 23
0.72 0.11 0.17
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 29 0.31
43 30 0.32
44 32 0.34
45 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAACAAATCG
Found at i:26783225 original size:20 final size:20
Alignment explanation
Indices: 26783200--26783241 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
26783190 GGTGGGGCCG
* *
26783200 TGTGGCTTGGGACACGCTCA
1 TGTGGCATGGGACACGCCCA
26783220 TGTGGCATGGGACACGCCCA
1 TGTGGCATGGGACACGCCCA
26783240 TG
1 TG
26783242 CCCTCAGCCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.17, C:0.26, G:0.36, T:0.21
Consensus pattern (20 bp):
TGTGGCATGGGACACGCCCA
Found at i:26784856 original size:27 final size:26
Alignment explanation
Indices: 26784812--26784863 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26784802 CTCGCTGTAA
*
26784812 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26784839 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
26784864 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26801249 original size:29 final size:29
Alignment explanation
Indices: 26801192--26801251 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
26801182 TGGAATTGGT
**
26801192 TACTCAATAACTTTCGACTTTCCTTGATC
1 TACTCAATAACTTTCGACTTTCCCCGATC
*
26801221 TACTCGATAACTTTCGACTTTCCCCGATC
1 TACTCAATAACTTTCGACTTTCCCCGATC
26801250 TA
1 TA
26801252 ACTCTGTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.23, C:0.30, G:0.08, T:0.38
Consensus pattern (29 bp):
TACTCAATAACTTTCGACTTTCCCCGATC
Found at i:26803126 original size:9 final size:9
Alignment explanation
Indices: 26803112--26803138 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
26803102 TTTTATTATA
26803112 TACATATTT
1 TACATATTT
26803121 TACATATTT
1 TACATATTT
26803130 TACATATTT
1 TACATATTT
26803139 AACCTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (9 bp):
TACATATTT
Found at i:26807340 original size:93 final size:93
Alignment explanation
Indices: 26807227--26807397 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
26807217 GCCCCTAAGT
* *
26807227 GAACTCAGACTCAACTCAACGAGCTT-GGGCATTCATATCCATAAGTGAACTCGGACTCAACTCA
1 GAACTCAGACTCAACTCAACGAG-TTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCA
26807291 ACGAGTTCGGATGCCTAGTTACATTTCAC
65 ACGAGTTCGGATGCCTAGTTACATTTCAC
* *
26807320 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
26807385 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26807398 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:26807391 original size:46 final size:46
Alignment explanation
Indices: 26807222--26807394 Score: 194
Period size: 46 Copynumber: 3.7 Consensus size: 46
26807212 AACCCGCCCC
* * *
26807222 TAAGTGAACTCAGACTCAACTCAACGAGCTT-GGGCATTCATATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAG-TTCGGACATTCACATCCA
*
26807268 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
26807316 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
26807361 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26807395 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 4 0.04
46 58 0.54
47 29 0.27
48 2 0.02
49 1 0.01
50 4 0.04
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:26810012 original size:14 final size:14
Alignment explanation
Indices: 26809993--26810025 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26809983 TACTCATAAT
26809993 CATATCAT-TTTGA
1 CATATCATATTTGA
26810006 CCATATCATATTTGA
1 -CATATCATATTTGA
26810021 CATAT
1 CATAT
26810026 GTACATTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.42
Consensus pattern (14 bp):
CATATCATATTTGA
Found at i:26812251 original size:40 final size:40
Alignment explanation
Indices: 26812137--26812254 Score: 191
Period size: 40 Copynumber: 3.0 Consensus size: 40
26812127 TCGATATATT
* *
26812137 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTAGTAAT
1 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAAA
* *
26812177 GTATATCCAGGTTAAATTCCGCAGGCTTCGTGCTGGTAAA
1 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAAA
*
26812217 GTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTA
26812255 CTATATCCGG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 71 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (40 bp):
GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTGGTAAA
Found at i:26812282 original size:40 final size:39
Alignment explanation
Indices: 26812138--26812297 Score: 133
Period size: 40 Copynumber: 4.0 Consensus size: 39
26812128 CGATATATTG
* * * * *
26812138 TATATCCAGGTTAAATCCCGCAGGCTTAGTGCTAGTAATG
1 TATATCCGGGCTAAATCCCACAGGCTTAGTGCTGGTAA-C
* * * * * *
26812178 TATATCCAGGTTAAATTCCGCAGGCTTCGTGCTGGTAAAG
1 TATATCCGGGCTAAATCCCACAGGCTTAGTGCTGGT-AAC
* *
26812218 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-AC
1 TATATCCGGGCTAAATCCCACAGGCTTAGTGCTGGTAAC
* * *
26812256 TATATCCGGGCCTAATTTCCCACAGGCTTTGTGCTAGTAAC
1 TATATCCGGG-CTAA-ATCCCACAGGCTTAGTGCTGGTAAC
26812297 T
1 T
26812298 GGATTCAGGT
Statistics
Matches: 104, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
38 11 0.11
39 3 0.03
40 85 0.82
41 5 0.05
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (39 bp):
TATATCCGGGCTAAATCCCACAGGCTTAGTGCTGGTAAC
Found at i:26812282 original size:80 final size:80
Alignment explanation
Indices: 26812137--26812295 Score: 205
Period size: 80 Copynumber: 2.0 Consensus size: 80
26812127 TCGATATATT
* * *
26812137 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTAGTAATGTATATCCAGGTTAAATTCCGCAGG
1 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTAGTAATCTATATCCAGGCTAAATTCCACAGG
*
26812202 CTTCGTGCTGGTAAA
66 CTTCGTGCTAGTAAA
* * * *
26812217 GTATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-CTATATCCGGGCCTAATTTCCCACA
1 GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTAGTAATCTATATCCAGG-CTAAATT-CCACA
*
26812280 GGCTTTGTGCTAGTAA
64 GGCTTCGTGCTAGTAA
26812296 CTGGATTCAG
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
78 9 0.13
79 6 0.09
80 53 0.78
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (80 bp):
GTATATCCAGGTTAAATCCCGCAGGCTTAGTGCTAGTAATCTATATCCAGGCTAAATTCCACAGG
CTTCGTGCTAGTAAA
Found at i:26814621 original size:27 final size:27
Alignment explanation
Indices: 26814590--26814767 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
26814580 TAAATTGTAC
26814590 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26814617 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
** * *
26814643 ATGCACTAAGTGTGCGAACTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26814671 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26814699 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26814726 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26814753 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26814768 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 106 0.83
28 22 0.17
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26814704 original size:82 final size:81
Alignment explanation
Indices: 26814591--26814741 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
26814581 AAATTGTACA
* *
26814591 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26814655 TGCGAACTGACCATGCG
65 TGCGAACTGACCATGCG
** *
26814672 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
26814737 TGCGA
65 TGCGA
26814742 GTTGATTATA
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.24
82 47 0.75
83 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAACTGACCATGCG
Found at i:26832743 original size:12 final size:12
Alignment explanation
Indices: 26832726--26832750 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26832716 AAATTAAACT
26832726 TATTTAATCAAA
1 TATTTAATCAAA
26832738 TATTTAATCAAA
1 TATTTAATCAAA
26832750 T
1 T
26832751 TCATCCAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (12 bp):
TATTTAATCAAA
Found at i:26837090 original size:53 final size:54
Alignment explanation
Indices: 26837009--26837216 Score: 177
Period size: 53 Copynumber: 3.9 Consensus size: 54
26836999 TTTCCTTTTT
* * * * * *
26837009 GAACTTACCATTGTCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* **
26837062 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATA
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCC-TTGCCTTATA
* * ** * * * *
26837116 GTAACTCATCAGTGTGATGTCTTGACATAGTCTTACATGATTTCCTTACCTTATA
1 G-AACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
* * * * * *
26837171 TAACTTATCAATACCATGCATTGGCATGGTCTTACATGATATCCTT
1 GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTT
26837217 ATCTTACCAA
Statistics
Matches: 122, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
52 2 0.02
53 43 0.35
54 36 0.30
55 39 0.32
56 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.37
Consensus pattern (54 bp):
GAACTCACCAATGCCATGCCTTGACATGGTCTTACATGATATCCTTGCCTTATA
Found at i:26837247 original size:47 final size:47
Alignment explanation
Indices: 26837195--26837410 Score: 369
Period size: 47 Copynumber: 4.6 Consensus size: 47
26837185 CATGCATTGG
* * *
26837195 CATGGTCTTACATGATATCCTTATCTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
26837242 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
*
26837289 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCGTGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
* * *
26837336 CATGGTTTTACATGGTATCCTTGTTTTACCAAATTCCATGTTCCAAA
1 CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
26837383 CATGGTCTTACATGGTATCCTTGTCTTA
1 CATGGTCTTACATGGTATCCTTGTCTTA
26837411 GTGCCAATGC
Statistics
Matches: 159, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 159 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (47 bp):
CATGGTCTTACATGGTATCCTTGTCTTACCAAATGCCATGTTCCAAA
Found at i:26839346 original size:31 final size:31
Alignment explanation
Indices: 26839311--26839374 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
26839301 CCTTTTCATA
*
26839311 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
***
26839342 TTTCATATTTCATGTTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
26839373 TT
1 TT
26839375 ACTATAAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:26839616 original size:25 final size:25
Alignment explanation
Indices: 26839588--26839679 Score: 75
Period size: 25 Copynumber: 3.7 Consensus size: 25
26839578 GCCTAGCCTC
*
26839588 TTTTAATAACTGGGGCAAAAGCCCT
1 TTTTGATAACTGGGGCAAAAGCCCT
**
26839613 TTTTGATAAAC-ACGGCAAAAGCCCT
1 TTTTGAT-AACTGGGGCAAAAGCCCT
*
26839638 TTTCGGGA-AACTGGGGC-AAAGCCCT
1 TTT--TGATAACTGGGGCAAAAGCCCT
*
26839663 TTTCTG-TAACTGAGGCA
1 TTT-TGATAACTGGGGCA
26839680 TAGCCCATTT
Statistics
Matches: 52, Mismatches: 9, Indels: 12
0.71 0.12 0.16
Matches are distributed among these distances:
24 9 0.17
25 35 0.67
26 6 0.12
27 2 0.04
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (25 bp):
TTTTGATAACTGGGGCAAAAGCCCT
Found at i:26839679 original size:24 final size:25
Alignment explanation
Indices: 26839630--26839685 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 25
26839620 AAACACGGCA
*
26839630 AAAGCCCTTTTCGGGAAACTGGGGC
1 AAAGCCCTTTTCGGGAAACTGAGGC
* *
26839655 AAAGCCCTTTTC-TGTAACTGAGGC
1 AAAGCCCTTTTCGGGAAACTGAGGC
*
26839679 ATAGCCC
1 AAAGCCC
26839686 ATTTGCACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 15 0.56
25 12 0.44
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (25 bp):
AAAGCCCTTTTCGGGAAACTGAGGC
Found at i:26839861 original size:24 final size:24
Alignment explanation
Indices: 26839820--26839865 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26839810 ATAATTAAAC
* * *
26839820 CCTAGGGGTATAATAGTCATTTTA
1 CCTAGGGGCAAAACAGTCATTTTA
26839844 CCTAGGGGCAAAACAGTCATTT
1 CCTAGGGGCAAAACAGTCATTT
26839866 CCATATTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.30
Consensus pattern (24 bp):
CCTAGGGGCAAAACAGTCATTTTA
Found at i:26850338 original size:25 final size:26
Alignment explanation
Indices: 26850323--26850418 Score: 119
Period size: 26 Copynumber: 3.8 Consensus size: 26
26850313 CTCTTTTAAT
*
26850323 AACTGGGGCAAAAGCCCTTTTTGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
26850349 AACTGGGGGAAAAGCCCTTTTCGATA
1 AACTGGGGCAAAAGCCCTTTTCGATA
*
26850375 AACTAGGGC-AAAGCCCTTTTCTG-T-
1 AACTGGGGCAAAAGCCCTTTTC-GATA
*
26850399 AACTGGGGC-ATAGCCCTTTT
1 AACTGGGGCAAAAGCCCTTTT
26850419 GCACTTCCTC
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
24 18 0.29
25 13 0.21
26 32 0.51
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
AACTGGGGCAAAAGCCCTTTTCGATA
Found at i:26856028 original size:43 final size:41
Alignment explanation
Indices: 26855934--26856054 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 41
26855924 GATTTGAGAT
* *
26855934 TTACATGTAAGAACTGTCTGGGAC-ATCGGTATTGTATATGA
1 TTACATGTAAGACCTGTCTGGGACAAT-GGCATTGTATATGA
* * *
26855975 TTTCGTGTAAGACCTTGTCTGGGACAATGGCATTGATATTTGA
1 TTACATGTAAGACC-TGTCTGGGACAATGGCATTG-TATATGA
* * *
26856018 TTACATGTAAGACCACGTCTGAGACATTGGCATTGTA
1 TTACATGTAAGACC-TGTCTGGGACAATGGCATTGTA
26856055 CGAGTTTTCT
Statistics
Matches: 66, Mismatches: 11, Indels: 5
0.80 0.13 0.06
Matches are distributed among these distances:
41 11 0.17
42 18 0.27
43 37 0.56
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.34
Consensus pattern (41 bp):
TTACATGTAAGACCTGTCTGGGACAATGGCATTGTATATGA
Found at i:26859533 original size:81 final size:82
Alignment explanation
Indices: 26859388--26859743 Score: 436
Period size: 81 Copynumber: 4.4 Consensus size: 82
26859378 TGGGCCATGT
* * * *
26859388 ATGACTGAAATAACCCCATAGGGTAAAATGACCGAAATACCCC-TATAGGGTGAAATGACTGAAA
1 ATGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTTATAGGGTAAAATGACCGAAA
* *
26859452 TACCCCCATAAGGTGAA
66 TACCCCCGTAAGGTAAA
* * *
26859469 ATGACCGAAATACCCCCATAGGGTAAAATGACCAAAATA-CCCTTATAGGATAAAATAACCGAAA
1 ATGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTTATAGGGTAAAATGACCGAAA
26859533 TACCCCCGTAAGGTAAA
66 TACCCCCGTAAGGTAAA
* *
26859550 ATGACCGAAATACCCCCATAGAGTAAAATGACCGAAATACCCCTGTA-A-GGTAAAATGACCAAA
1 ATGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCT-TATAGGGTAAAATGACCGAA
* *
26859613 ATACCCTCGTAGGGTAAA
65 ATACCCCCGTAAGGTAAA
* **
26859631 ATGACCGAAATACCCTCAT-GAGGTAAAATGACCGAAATACCCCTT-TAGGGTAAAATGATTGAA
1 ATGACCGAAATACCCCCATAG-GGTAAAATGACCGAAATACCCCTTATAGGGTAAAATGACCGAA
* *
26859694 ATACCCCTGTAAGATAAA
65 ATACCCCCGTAAGGTAAA
* * * ** *
26859712 ATAACTGTAATACCCCTGTAAGGTAAAATGAC
1 ATGACCGAAATACCCCCATAGGGTAAAATGAC
26859744 TGATTTGCCC
Statistics
Matches: 236, Mismatches: 32, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
80 6 0.03
81 223 0.94
82 5 0.02
83 2 0.01
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (82 bp):
ATGACCGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTTATAGGGTAAAATGACCGAAA
TACCCCCGTAAGGTAAA
Found at i:26859701 original size:27 final size:27
Alignment explanation
Indices: 26859388--26859743 Score: 369
Period size: 27 Copynumber: 13.2 Consensus size: 27
26859378 TGGGCCATGT
*
26859388 ATGACTGAAATAACCCC-ATAGGGTAAA
1 ATGACCGAAAT-ACCCCTATAGGGTAAA
*
26859415 ATGACCGAAATACCCCTATAGGGTGAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * * *
26859442 ATGACTGAAATACCCCCATAAGGTGAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
26859469 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * *
26859496 ATGACCAAAATACCCTTATAGGATAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* ** *
26859523 ATAACCGAAATACCCCCGTAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
26859550 ATGACCGAAATACCCCCATAGAGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
26859577 ATGACCGAAATACCCCTGTAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
26859604 ATGACCAAAATA-CCCTCGTAGGGTAAA
1 ATGACCGAAATACCCCT-ATAGGGTAAA
26859631 ATGACCGAAATA-CCCTCAT-GAGGTAAA
1 ATGACCGAAATACCCCT-ATAG-GGTAAA
*
26859658 ATGACCGAAATACCCCTTTAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
** * * *
26859685 ATGATTGAAATACCCCTGTAAGATAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * * * *
26859712 ATAACTGTAATACCCCTGTAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
26859739 ATGAC
1 ATGAC
26859744 TGATTTGCCC
Statistics
Matches: 282, Mismatches: 42, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
26 10 0.04
27 267 0.95
28 5 0.02
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (27 bp):
ATGACCGAAATACCCCTATAGGGTAAA
Found at i:26859934 original size:36 final size:36
Alignment explanation
Indices: 26859889--26859959 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
26859879 GTACTGATAT
* * *
26859889 GGTTACACGGGTCGCCCAAGACGACTGTGGACCTAA
1 GGTTACACGGGTCACCCAAGACAACTATGGACCTAA
* *
26859925 GGTTGCACGGGTCACCCAAGGCAACTATGGACCTA
1 GGTTACACGGGTCACCCAAGACAACTATGGACCTA
26859960 CTGATGACTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.25, C:0.28, G:0.30, T:0.17
Consensus pattern (36 bp):
GGTTACACGGGTCACCCAAGACAACTATGGACCTAA
Found at i:26867372 original size:80 final size:80
Alignment explanation
Indices: 26867239--26867463 Score: 307
Period size: 80 Copynumber: 2.8 Consensus size: 80
26867229 CTAATGGGGT
* * *
26867239 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
26867304 TTACTA-ATTCCGAGC
66 TTACTATA-TCCGAGC
*
26867319 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
*
26867384 TTACTATATCCGGGC
66 TTACTATATCCGAGC
* * *
26867399 TAAGTCCCGAAGGCATTTGTG-GTAGTGAC-CATATCCGGGCTAAGACCC-AACGGC-CTTGTGC
1 TAAGTCCCGAAGGCATTTGTGCG-AGTGACTAAT-TCCGGGCTAAGTCCCGAA-GGCATTTGTGC
26867460 GAGT
63 GAGT
26867464 GGTTATATTC
Statistics
Matches: 132, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
79 15 0.11
80 116 0.88
81 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.27
Consensus pattern (80 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTGACTAATTCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG
TTACTATATCCGAGC
Done.