Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 83 of 259
Found at i:26867442 original size:40 final size:40
Alignment explanation
Indices: 26867239--26867419 Score: 301
Period size: 40 Copynumber: 4.5 Consensus size: 40
26867229 CTAATGGGGT
* * * *
26867239 TAAGTCCCGAAGACATTTGTGCTAGTGATTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
*
26867279 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
26867319 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
26867359 TAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TCCGGGC
26867399 TAAGTCCCGAAGGCATTTGTG
1 TAAGTCCCGAAGGCATTTGTG
26867420 GTAGTGACCA
Statistics
Matches: 134, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
39 2 0.01
40 132 0.99
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGC
Found at i:26873706 original size:42 final size:43
Alignment explanation
Indices: 26873645--26873742 Score: 144
Period size: 42 Copynumber: 2.3 Consensus size: 43
26873635 GATTTGAGAT
*
26873645 TTACATGTAAGACCATGTCTAGGACATCGGTATCG-TATTTGA
1 TTACATGTAAGACCATGTCTAGGACATCGGCATCGATATTTGA
* * * *
26873687 TTTCGTGTAAGACCCTGTCTAGGACATTGGCATCGATATTTGA
1 TTACATGTAAGACCATGTCTAGGACATCGGCATCGATATTTGA
26873730 TTACATGTAAGAC
1 TTACATGTAAGAC
26873743 AACGTCTGGG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACATCGGCATCGATATTTGA
Found at i:26873760 original size:43 final size:43
Alignment explanation
Indices: 26873592--26873762 Score: 143
Period size: 43 Copynumber: 4.0 Consensus size: 43
26873582 ATATGATTCT
* * * ** *
26873592 GATATGTGATTTCGTGTAAGACCACGTCT-GAGATGTTGGCGTC
1 GATATTTGATTACATGTAAGACCACGTCTAG-GACATTGGCATC
* * * *
26873635 GAT-TTGAGATTTACATGTAAGACCATGTCTAGGACATCGGTATC
1 GATATT-TGA-TTACATGTAAGACCACGTCTAGGACATTGGCATC
* *
26873679 G-TATTTGATTTCGTGTAAGACC-CTGTCTAGGACATTGGCATC
1 GATATTTGATTACATGTAAGACCAC-GTCTAGGACATTGGCATC
* * *
26873721 GATATTTGATTACATGTAAGACAACGTCTGGGACGTTGGCAT
1 GATATTTGATTACATGTAAGACCACGTCTAGGACATTGGCAT
26873763 TGTACGAGTT
Statistics
Matches: 100, Mismatches: 21, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
42 30 0.30
43 41 0.41
44 28 0.28
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
GATATTTGATTACATGTAAGACCACGTCTAGGACATTGGCATC
Found at i:26878995 original size:28 final size:27
Alignment explanation
Indices: 26878931--26879085 Score: 229
Period size: 27 Copynumber: 5.7 Consensus size: 27
26878921 TTATTAAGTC
* *
26878931 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
26878958 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
* *
26878986 CGCACACTTAGAGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
26879013 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
26879041 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
26879068 CGCACACTTAGTGCTACA
1 CGCACACTTAGTGCTACA
26879086 CAATTTAAAC
Statistics
Matches: 119, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 68 0.57
28 51 0.43
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26879015 original size:55 final size:55
Alignment explanation
Indices: 26878931--26879107 Score: 246
Period size: 55 Copynumber: 3.2 Consensus size: 55
26878921 TTATTAAGTC
* * *
26878931 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * *
26878986 CGCACACTTAGAGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
26879041 CGCACACTTAGTGCTACATATTCAATTCGCACACTTAGTGCTACACAATTTAAACC
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAA-TCAAACT
26879097 CGCACACTTAG
1 CGCACACTTAG
26879108 CGCCAATCTC
Statistics
Matches: 108, Mismatches: 13, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
55 92 0.85
56 16 0.15
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:26882428 original size:43 final size:43
Alignment explanation
Indices: 26882380--26882537 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 43
26882370 GTTACCTAGA
*
26882380 TGTGATTACATGTAAGATCATGTCTGGGACATTGGCATTGTAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
*
26882423 TGTGATTACATGTAAGACCATGTCTGAGACATTGGCATCAT-TAT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTAT
* * * * *
26882467 T-CGATTTCATGTAAGACCCTGTCTGGGACAGTGGCATCG-AT
1 TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
** *
26882508 ATGTGACGACATGTAAGACCATATCTGGGA
1 -TGTGATTACATGTAAGACCATGTCTGGGA
26882538 TATGGCTTTG
Statistics
Matches: 96, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 88 0.92
44 4 0.04
45 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:26884964 original size:40 final size:40
Alignment explanation
Indices: 26884915--26885017 Score: 170
Period size: 40 Copynumber: 2.6 Consensus size: 40
26884905 TGTTTTAATT
*
26884915 TCGCACACTAAGTGTCATACATAGCCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
*
26884955 TCGCACACTAAGTGCCATACATAGTCGAAGCTATCTCGAA
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
**
26884995 TTACACACTAAGTGCCATACATA
1 TCGCACACTAAGTGCCATACATA
26885018 ACTGAATTGT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 59 1.00
ACGTcount: A:0.34, C:0.27, G:0.16, T:0.23
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCGAA
Found at i:26894559 original size:21 final size:22
Alignment explanation
Indices: 26894522--26894568 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
26894512 ATAATTTTCA
* *
26894522 TTTT-TTTCATGTTCAAGTTTT
1 TTTTATTTCATGTACAAGATTT
26894543 TTTTATTTCAT-TACAAGATTT
1 TTTTATTTCATGTACAAGATTT
*
26894564 CTTTA
1 TTTTA
26894569 CTCCATTTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.21, C:0.11, G:0.06, T:0.62
Consensus pattern (22 bp):
TTTTATTTCATGTACAAGATTT
Found at i:26900194 original size:14 final size:15
Alignment explanation
Indices: 26900175--26900204 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26900165 TTTAAATTGA
26900175 TTGAAATT-TATGAT
1 TTGAAATTGTATGAT
26900189 TTGAAATTGTATGAT
1 TTGAAATTGTATGAT
26900204 T
1 T
26900205 GTTTGTGATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (15 bp):
TTGAAATTGTATGAT
Found at i:26903627 original size:65 final size:65
Alignment explanation
Indices: 26903493--26903614 Score: 190
Period size: 65 Copynumber: 1.9 Consensus size: 65
26903483 ACCGCGGCTT
*
26903493 TTTGTGAGCATCCTGTTATATGATCGGTTGTGATCCTACATATATTGCGGACACAAACACAGCTC
1 TTTGTGAGCATCCTGTTATATGATCGGTTGTGATCCTACATATATTGCAGACACAAACACAGCTC
* * ** *
26903558 TTTGTGAGCGTCCTGTTCTATGATCGGTTGTGATTTTGCATATATTGCAGACACAAA
1 TTTGTGAGCATCCTGTTATATGATCGGTTGTGATCCTACATATATTGCAGACACAAA
26903615 TGTAGTTCTT
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 51 1.00
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35
Consensus pattern (65 bp):
TTTGTGAGCATCCTGTTATATGATCGGTTGTGATCCTACATATATTGCAGACACAAACACAGCTC
Found at i:26903714 original size:26 final size:25
Alignment explanation
Indices: 26903676--26903740 Score: 96
Period size: 26 Copynumber: 2.6 Consensus size: 25
26903666 TGGCTATCCG
26903676 GAGCTT-CTGATTAAAGTCTCTTTGT
1 GAGCTTCCTGATTAAAGT-TCTTTGT
26903701 GAGCTTCCTGATTAAAAGTTCTTTGT
1 GAGCTTCCTGATT-AAAGTTCTTTGT
*
26903727 GAACTTCCTGATTA
1 GAGCTTCCTGATTA
26903741 TGGCTTGTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
25 7 0.19
26 25 0.68
27 5 0.14
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (25 bp):
GAGCTTCCTGATTAAAGTTCTTTGT
Found at i:26921244 original size:27 final size:27
Alignment explanation
Indices: 26921214--26921390 Score: 160
Period size: 27 Copynumber: 6.5 Consensus size: 27
26921204 ATATTGAGCC
* *
26921214 CGCACACTCAGTGCCATATAATCAACT
1 CGCACACTTAGTGCCACATAATCAACT
* * *
26921241 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCCACATAATCAACT
* *
26921268 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCCACATAATCA-ACT
* ** *
26921296 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCCACATAATCAACT
* **
26921323 CGCACACTTAGTG-CATCATATTCATTT
1 CGCACACTTAGTGCCA-CATAATCAACT
* * *
26921350 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCCACATAATC-AACT
26921377 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26921391 TGTACAATTT
Statistics
Matches: 125, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 1 0.01
27 99 0.79
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCCACATAATCAACT
Found at i:26921353 original size:82 final size:81
Alignment explanation
Indices: 26921235--26921390 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
26921225 TGCCATATAA
* * * *
26921235 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTC-GAATCGCA
26921300 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26921317 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCA
26921381 CACTTAGTGC
65 CACTTAGTGC
26921391 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26929539 original size:8 final size:8
Alignment explanation
Indices: 26929526--26929550 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26929516 ATTAAGGACT
26929526 AAAATGTG
1 AAAATGTG
26929534 AAAATGTG
1 AAAATGTG
26929542 AAAATGTG
1 AAAATGTG
26929550 A
1 A
26929551 GGGCTAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (8 bp):
AAAATGTG
Found at i:26930062 original size:43 final size:42
Alignment explanation
Indices: 26929966--26930070 Score: 113
Period size: 42 Copynumber: 2.5 Consensus size: 42
26929956 AACTTATGAT
*
26929966 TTACATGTAAGACCAAGTCTGGGACATCAGCATCGTATTTGA
1 TTACATGTAAGACCAAGTCTAGGACATCAGCATCGTATTTGA
*** ** *
26930008 TTTTGTGTAAGACCCTGTCTAGGACAGT-GGCATCGATATTTGA
1 TTACATGTAAGACCAAGTCTAGGACA-TCAGCATCG-TATTTGA
*
26930051 TTACATGTAAGACCACGTCT
1 TTACATGTAAGACCAAGTCT
26930071 GAGACGTTGG
Statistics
Matches: 49, Mismatches: 12, Indels: 3
0.77 0.19 0.05
Matches are distributed among these distances:
42 26 0.53
43 23 0.47
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCAAGTCTAGGACATCAGCATCGTATTTGA
Found at i:26930082 original size:43 final size:43
Alignment explanation
Indices: 26929927--26930083 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 43
26929917 TGTGTTTTCG
* *
26929927 TGTAAGACCACGTTTGGGACGTTGGCATC-A-ACTTATGATTTACA
1 TGTAAGACCACGTCTGAGACGTTGGCATCGATA-TT-TGA-TTACA
* * * ** ***
26929971 TGTAAGACCAAGTCTGGGACATCAGCATCG-TATTTGATTTTG
1 TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
26930013 TGTAAGACC-CTGTCT-AGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGA-GAC-GTTGGCATCGATATTTGATTACA
26930056 TGTAAGACCACGTCTGAGACGTTGGCAT
1 TGTAAGACCACGTCTGAGACGTTGGCAT
26930084 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 16, Indels: 19
0.72 0.13 0.15
Matches are distributed among these distances:
42 25 0.28
43 34 0.39
44 28 0.32
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGAGACGTTGGCATCGATATTTGATTACA
Found at i:26931259 original size:43 final size:43
Alignment explanation
Indices: 26931193--26931306 Score: 158
Period size: 43 Copynumber: 2.7 Consensus size: 43
26931183 TGTTTTTGCT
* *
26931193 CGGCCTAGTCATA-GGAGCTTGTCTAATGTTTTTGTAAGGCACA
1 CGGCCTAGTCACACGG-GCATGTCTAATGTTTTTGTAAGGCACA
*
26931236 CGGCCTAGTCACACGGGCATGTCTAATGTTTTTGTAAGGCATA
1 CGGCCTAGTCACACGGGCATGTCTAATGTTTTTGTAAGGCACA
* * *
26931279 CGACCTAGTCACACGGGCGTGGCTAATG
1 CGGCCTAGTCACACGGGCATGTCTAATG
26931307 CCGTGTGGGA
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 62 0.97
44 2 0.03
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (43 bp):
CGGCCTAGTCACACGGGCATGTCTAATGTTTTTGTAAGGCACA
Found at i:26935317 original size:30 final size:30
Alignment explanation
Indices: 26935283--26935343 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
26935273 TGGGATAGAA
*
26935283 TGATGATGGACTTTGTTTCGGGCTTGCCCT
1 TGATGATGGACTTTGTTTCGGACTTGCCCT
*
26935313 TGATGATGGACTTTGTTTCGGATTTGCCCT
1 TGATGATGGACTTTGTTTCGGACTTGCCCT
26935343 T
1 T
26935344 ACCTCCGCGA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.11, C:0.18, G:0.28, T:0.43
Consensus pattern (30 bp):
TGATGATGGACTTTGTTTCGGACTTGCCCT
Found at i:26937754 original size:43 final size:42
Alignment explanation
Indices: 26937599--26937755 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
26937589 TGTGTTCTCG
* * *
26937599 TGTAAGACCACATCTGGGGCGTTGGCATCG-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGTA-TT-TGA-TTACA
* * * * *
26937643 TGTAAGACCATGTCTGGGACATCGACATCGTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTACA
* * *
26937685 TGTAAAACCTA-GTTTGGGACAGTGGCATCAGTATTTGATTACA
1 TGTAAGACC-ACGTCTGGGACATTGGCATC-GTATTTGATTACA
*
26937728 TGTAAGACCACGTCTGGGTCATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
26937756 TGTACGAGCT
Statistics
Matches: 90, Mismatches: 19, Indels: 9
0.76 0.16 0.08
Matches are distributed among these distances:
42 26 0.29
43 37 0.41
44 26 0.29
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTACA
Found at i:26946089 original size:24 final size:24
Alignment explanation
Indices: 26946057--26946127 Score: 124
Period size: 24 Copynumber: 3.0 Consensus size: 24
26946047 CTGTCAGGAG
26946057 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
26946081 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
**
26946105 AGGATTTAGGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
26946128 GGAAATCTAG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.35, C:0.01, G:0.38, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:26946139 original size:48 final size:48
Alignment explanation
Indices: 26946057--26946150 Score: 111
Period size: 48 Copynumber: 1.9 Consensus size: 48
26946047 CTGTCAGGAG
** * *
26946057 AGGATTTAGGAGTTGATAAGGGATAGGATTTAGGAGTTGAT-AAGGGAT
1 AGGATTTAGGAGCAGATAAGGGA-AGGATCTAGGAGCTGATCAAGGGAT
26946105 AGGATTTAGGAGCAGATAAGGG-AGGAAATCTAGGAGCTGATCAAGG
1 AGGATTTAGGAGCAGATAAGGGAAGG--ATCTAGGAGCTGATCAAGG
26946151 AACAAGAAGT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
46 3 0.08
48 32 0.82
49 4 0.10
ACGTcount: A:0.35, C:0.04, G:0.37, T:0.23
Consensus pattern (48 bp):
AGGATTTAGGAGCAGATAAGGGAAGGATCTAGGAGCTGATCAAGGGAT
Found at i:26947621 original size:54 final size:54
Alignment explanation
Indices: 26947543--26947657 Score: 151
Period size: 54 Copynumber: 2.1 Consensus size: 54
26947533 TGGAGGAAGC
* * *
26947543 GTTCTGGTGGCTATGCCACAATTATCT-AATCTGGTGGCTCTGCCACATATTTCT
1 GTTCTGGTGGCTATACCACAATTATCTGAATCTGGTGACTCTGCCACAT-TATCT
* * * *
26947597 GTTCTGGTGGCTCTACCACGATTATCTGTATCTGGTGACTCTGTCACATTATCT
1 GTTCTGGTGGCTATACCACAATTATCTGAATCTGGTGACTCTGCCACATTATCT
26947651 GTTCTGG
1 GTTCTGG
26947658 CAGCAATGCT
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
GTTCTGGTGGCTATACCACAATTATCTGAATCTGGTGACTCTGCCACATTATCT
Found at i:26947651 original size:27 final size:27
Alignment explanation
Indices: 26947543--26947657 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
26947533 TGGAGGAAGC
*
26947543 GTTCTGGTGGCTATGCCACAATTATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
**
26947570 AATCTGGTGGCTCTGCCACATATT-TCT
1 GTTCTGGTGGCTCTGCCACA-ATTATCT
* *
26947597 GTTCTGGTGGCTCTACCACGATTATCT
1 GTTCTGGTGGCTCTGCCACAATTATCT
* *
26947624 GTATCTGGTGACTCTGTCAC-ATTATCT
1 GT-TCTGGTGGCTCTGCCACAATTATCT
26947651 GTTCTGG
1 GTTCTGG
26947658 CAGCAATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
GTTCTGGTGGCTCTGCCACAATTATCT
Found at i:26955349 original size:27 final size:27
Alignment explanation
Indices: 26955309--26955420 Score: 120
Period size: 27 Copynumber: 4.1 Consensus size: 27
26955299 AGGAAGCGCC
*
26955309 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
26955336 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
* *
26955363 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACAATTATCT-GAT
* ** *
26955391 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
26955417 CTGG
1 CTGG
26955421 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.65
28 17 0.24
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:26955415 original size:54 final size:54
Alignment explanation
Indices: 26955309--26955420 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
26955299 AGGAAGCGCC
* * *
26955309 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
* * * *
26955363 CTGGTGGCTCTGCCACGATTATCTATATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCT-GATCTGGTGACTCTACCACATATATCTGTT
26955417 CTGG
1 CTGG
26955421 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTACCACATATATCTGTT
Found at i:26961580 original size:24 final size:25
Alignment explanation
Indices: 26961553--26961604 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
26961543 GCCTAGCCTC
*
26961553 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
**
26961577 TTTTGGTAAACTAGGGCAAAGCCCT
1 TTTTAATAAACTAGGGCAAAGCCCT
26961602 TTT
1 TTT
26961605 CGCACTTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTAGGGCAAAGCCCT
Found at i:26961707 original size:21 final size:21
Alignment explanation
Indices: 26961652--26961697 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
26961642 TATAGTGAGT
26961652 ATATCA-AAGCATATCATGTGC
1 ATATCATAA-CATATCATGTGC
*
26961673 ATCTCATAACATATCATGTGC
1 ATATCATAACATATCATGTGC
26961694 ATAT
1 ATAT
26961698 TATGTCATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 20 0.91
22 2 0.09
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.33
Consensus pattern (21 bp):
ATATCATAACATATCATGTGC
Found at i:26968030 original size:34 final size:33
Alignment explanation
Indices: 26967987--26968051 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 33
26967977 AATATCAATA
*
26967987 TGGGTCTTAGCCTAATACAATAACAGTATCAGTG
1 TGGGCCTTAGCCTAATACAAT-ACAGTATCAGTG
* * *
26968021 TGGGCCTTAGCCTATTTCAGTACAGTATCAG
1 TGGGCCTTAGCCTAATACAATACAGTATCAG
26968052 AAATGCATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
33 10 0.37
34 17 0.63
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.31
Consensus pattern (33 bp):
TGGGCCTTAGCCTAATACAATACAGTATCAGTG
Found at i:26968112 original size:22 final size:23
Alignment explanation
Indices: 26968073--26968116 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
26968063 AAGATCCTAC
*
26968073 CCATCCATCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
26968096 CCATCCAGCC-CTACACTCCAC
1 CCATCCAGCCTCTACACTCCAC
26968117 ATGGAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.23, C:0.55, G:0.02, T:0.20
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:26977627 original size:34 final size:33
Alignment explanation
Indices: 26977589--26977658 Score: 86
Period size: 34 Copynumber: 2.1 Consensus size: 33
26977579 TTAGTTGCAA
26977589 TATCAATGTGGACATTAGCCCAATACAGTAGCAG
1 TATCAATGTGGACATTAGCCCAATACAGTA-CAG
* * * * *
26977623 TATCAGTGTGGGCCTTAGCCCATTTCAGTACAG
1 TATCAATGTGGACATTAGCCCAATACAGTACAG
26977656 TAT
1 TAT
26977659 AAGAAATGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
33 6 0.19
34 25 0.81
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (33 bp):
TATCAATGTGGACATTAGCCCAATACAGTACAG
Found at i:26980891 original size:29 final size:29
Alignment explanation
Indices: 26980825--26980947 Score: 203
Period size: 29 Copynumber: 4.3 Consensus size: 29
26980815 GTCTACATAT
*
26980825 ATTCATATGGCCCATTAGGCCC-AATCTC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
26980853 ACTCATATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
26980882 ATTCGTATGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
*
26980911 ATTCATACGGCCCATTAGGCCCAAATCAC
1 ATTCATATGGCCCATTAGGCCCAAATCAC
26980940 ATTCATAT
1 ATTCATAT
26980948 ACATGCTTTT
Statistics
Matches: 87, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 21 0.24
29 66 0.76
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCCAAATCAC
Found at i:27004619 original size:26 final size:26
Alignment explanation
Indices: 27004590--27004641 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27004580 AATGGTAATT
*
27004590 AAATGTTA-AATTTATATGCTGTTATG
1 AAATGTTAGAATTTATAT-ATGTTATG
27004616 AAATGTTAGAATTTATATATGTTATG
1 AAATGTTAGAATTTATATATGTTATG
27004642 GCCAAATATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (26 bp):
AAATGTTAGAATTTATATATGTTATG
Found at i:27011017 original size:25 final size:25
Alignment explanation
Indices: 27010989--27011058 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
27010979 CTCTTTTAAT
*
27010989 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
27011014 AACTGGGGCAAAGGCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
27011039 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
27011059 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:27011896 original size:27 final size:27
Alignment explanation
Indices: 27011866--27011930 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
27011856 GGGCATATTC
*
27011866 GTCATTTTACCATACA-AGGGTATTACA
1 GTCATTTTACCATACAGAGGCT-TTACA
* * *
27011893 GTCACTTTACCCTACAGAGGCTTTACG
1 GTCATTTTACCATACAGAGGCTTTACA
*
27011920 GTCTTTTTACC
1 GTCATTTTACC
27011931 TATTAGGGGT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 27 0.87
28 4 0.13
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCATACAGAGGCTTTACA
Found at i:27012014 original size:27 final size:27
Alignment explanation
Indices: 27011961--27012201 Score: 169
Period size: 27 Copynumber: 8.9 Consensus size: 27
27011951 TTTCATCCTA
* * * * *
27011961 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* *
27011988 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
** *** *
27012015 CAACAGTATTTTTATAATTTTTAGAAAGC
1 CAAGGGTATTTCGGTAA-TTTTATAAA-C
* * *
27012044 CAAGGGTATTTCTGTAATTTTGTAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
27012071 CAGGGGTATTTTGGTAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTATAAAC
** * *
27012098 TGAGGGTATTTCGGTAATTTCACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
*
27012125 C-AGTGGTATTTCGGTAATTTTACAAAC
1 CAAG-GGTATTTCGGTAATTTTATAAAC
* * * *
27012152 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCGGTAATTTTATAAAC
* * *
27012179 TAGGGGTATTTTGGTAATTTTAT
1 CAAGGGTATTTCGGTAATTTTAT
27012202 CCTACAGGGG
Statistics
Matches: 172, Mismatches: 38, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
26 2 0.01
27 141 0.82
28 15 0.09
29 14 0.08
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTATAAAC
Found at i:27012164 original size:81 final size:81
Alignment explanation
Indices: 27012048--27012198 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
27012038 GAAAGCCAAG
* ** * *
27012048 GGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAA-TTGAGGGTATTTCGG
1 GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTCGG
27012112 TAATTTCACAAACCAGT
65 TAATTTCACAAACCAGT
*
27012129 GGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGG
1 GGTATTTCGGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGG
27012193 TAATTT
65 TAATTT
27012199 TATCCTACAG
Statistics
Matches: 62, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
80 1 0.02
81 59 0.95
82 2 0.03
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (81 bp):
GGTATTTCGGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTCGGT
AATTTCACAAACCAGT
Found at i:27012210 original size:27 final size:26
Alignment explanation
Indices: 27012047--27012230 Score: 181
Period size: 27 Copynumber: 6.8 Consensus size: 26
27012037 AGAAAGCCAA
**
27012047 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAA-CAG
* **
27012074 GGGTATTTTGGTAATTTTATAAATTG
1 GGGTATTTTGGTAATTTTACAAACAG
* *
27012100 AGGGTATTTCGGTAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAA-CAG
* *
27012128 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
27012155 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
**
27012182 GGGTATTTTGGTAATTTTATCCTACAG
1 GGGTATTTTGGTAATTTTA-CAAACAG
* *
27012209 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
27012231 TCGAGGGTAA
Statistics
Matches: 134, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
26 4 0.03
27 126 0.94
28 4 0.03
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:27012214 original size:81 final size:81
Alignment explanation
Indices: 27012047--27012230 Score: 203
Period size: 81 Copynumber: 2.3 Consensus size: 81
27012037 AGAAAGCCAA
* ** * *
27012047 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTATAAATTGAGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
27012112 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * *
27012128 TGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATTTTACAAA-TAGAGGGTATTTC
* **
27012191 GGTAATTTTATCCTA-CAG
64 GGTAATTTCA-CAAACCAG
* *
27012209 GGGTATTTTAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
27012231 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
80 1 0.01
81 81 0.94
82 4 0.05
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.41
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTCGG
TAATTTCACAAACCAG
Found at i:27012263 original size:27 final size:27
Alignment explanation
Indices: 27012229--27012426 Score: 236
Period size: 27 Copynumber: 7.3 Consensus size: 27
27012219 GTAATTTCAC
* *
27012229 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
27012256 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTTTGTA
* ** *
27012283 AATCGAGGGTGAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * *
27012310 AATCAAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
27012337 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTTTGTA
* * * * *
27012364 AATCAAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTTTGTA
**
27012391 AATCGAGGGTAAAATGGTAATTTTACA
1 AATCGAGGGTAAAATGGTAATTTTGTA
27012418 AATCGAGGG
1 AATCGAGGG
27012427 CATTTCAGTA
Statistics
Matches: 145, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 143 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTTTGTA
Found at i:27012346 original size:81 final size:81
Alignment explanation
Indices: 27012229--27012426 Score: 299
Period size: 81 Copynumber: 2.4 Consensus size: 81
27012219 GTAATTTCAC
* * * *
27012229 AATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTTTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCAAGGGT
*
27012293 GAAACAGTAATTCTGTA
65 GAAACAGTAATTCTATA
* *
27012310 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
*
27012375 AAACGGTAATTCTATA
66 AAACAGTAATTCTATA
*
27012391 AATCGAGGGTAAAATGGTAATTTTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGG
27012427 CATTTCAGTA
Statistics
Matches: 105, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
81 104 0.99
82 1 0.01
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCAAGGGTG
AAACAGTAATTCTATA
Found at i:27021184 original size:47 final size:47
Alignment explanation
Indices: 27021110--27021263 Score: 263
Period size: 47 Copynumber: 3.3 Consensus size: 47
27021100 TCCTTCGGGA
*
27021110 CTTATCACATATATACACTTTCCCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
** *
27021157 CTTATCACATATATACACTTTCACATTCATCACATTTGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
27021204 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
27021251 CTTATCACATATA
1 CTTATCACATATA
27021264 CATATCTTGT
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.29, C:0.31, G:0.07, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27021236 original size:25 final size:25
Alignment explanation
Indices: 27021160--27021237 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
27021150 ATTAGGCCTT
*
27021160 ATCACATATATACACTTTCACATTC
1 ATCACACATATACACTTTCACATTC
* * * * *
27021185 AT--CACATTTGC-CATTCGGCCTT-
1 ATCACACATATACACTTTC-ACATTC
27021207 ATCACACATATACACTTTCACATTC
1 ATCACACATATACACTTTCACATTC
27021232 ATCACA
1 ATCACA
27021238 TCGGCCATTA
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 6 0.16
23 9 0.24
24 10 0.27
25 12 0.32
ACGTcount: A:0.32, C:0.31, G:0.04, T:0.33
Consensus pattern (25 bp):
ATCACACATATACACTTTCACATTC
Found at i:27023132 original size:13 final size:13
Alignment explanation
Indices: 27023114--27023138 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27023104 TACTAAATTT
27023114 TCATGGATTCAAA
1 TCATGGATTCAAA
27023127 TCATGGATTCAA
1 TCATGGATTCAA
27023139 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAA
Found at i:27027363 original size:61 final size:61
Alignment explanation
Indices: 27027268--27027390 Score: 210
Period size: 61 Copynumber: 2.0 Consensus size: 61
27027258 ACTGTAATTG
* * *
27027268 TGTTGATAGATCCAGGATCGACTCATTCTTATGTATGTGAAACTTTTGTATCTAGTGAGAC
1 TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
*
27027329 TGTTGATAGATCCAGTATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
1 TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
27027390 T
1 T
27027391 TTGCCTGTAG
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (61 bp):
TGTTGATAGATCCAGGATCGACACATTCTTATGTATGTGAAACTTTAGTATCTAGTAAGAC
Found at i:27027569 original size:21 final size:21
Alignment explanation
Indices: 27027545--27027589 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
27027535 GAATTTGATA
*
27027545 TAATTCTGGGTACGGATTGGT
1 TAATTCTGGGTACAGATTGGT
27027566 TAATTCTGGGTACAGATTGGT
1 TAATTCTGGGTACAGATTGGT
27027587 TAA
1 TAA
27027590 CACTGCATGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.24, C:0.09, G:0.29, T:0.38
Consensus pattern (21 bp):
TAATTCTGGGTACAGATTGGT
Found at i:27032696 original size:41 final size:41
Alignment explanation
Indices: 27032645--27032728 Score: 116
Period size: 41 Copynumber: 2.0 Consensus size: 41
27032635 TCTATTGCAA
* * * *
27032645 ATTTTTCAATTTAATATTATAATATCTGAA-GCTATTTTGCC
1 ATTTTCCAATTTAATACTACAATATCT-AAGGCAATTTTGCC
27032686 ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
1 ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
27032727 AT
1 AT
27032729 AATTTTAATG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
40 2 0.05
41 36 0.95
ACGTcount: A:0.33, C:0.15, G:0.07, T:0.44
Consensus pattern (41 bp):
ATTTTCCAATTTAATACTACAATATCTAAGGCAATTTTGCC
Found at i:27035124 original size:30 final size:31
Alignment explanation
Indices: 27035080--27035156 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 31
27035070 AATTTGATAA
27035080 ATAAA-TTTTAATTTTGTGC-AAT-TATACAT
1 ATAAACTTTT-ATTTTGTGCAAATGTATACAT
*
27035109 ATTAAACTTTTATTTTGGTTCAAATGTATACAT
1 A-TAAACTTTTATTTT-GTGCAAATGTATACAT
*
27035142 A-AAACTTTGATTTTG
1 ATAAACTTTTATTTTG
27035157 ATTTAATTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
29 1 0.02
30 10 0.24
31 19 0.46
32 3 0.07
33 8 0.20
ACGTcount: A:0.35, C:0.08, G:0.09, T:0.48
Consensus pattern (31 bp):
ATAAACTTTTATTTTGTGCAAATGTATACAT
Found at i:27036477 original size:46 final size:45
Alignment explanation
Indices: 27036419--27036640 Score: 148
Period size: 46 Copynumber: 4.8 Consensus size: 45
27036409 ATTCGTGGGT
*
27036419 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCATATTCTGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TATTCTGA
* **
27036465 GAGCCAGTGTAAGACCATGTTTGGGACATGACATCGG--TATTGAGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCTATTCTGA
* ** * **
27036510 CGAGTGCTAGTACAAGACATGTGTGGGACATGCATCGGCCTCGAGAC-GTA
1 -GA--GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT--ATTCTG-A
* ***
27036560 -AGCCAGTGTAAGACATGTCGGGGACATGCATCGG-CTACGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTA--TTCTGA
* *
27036605 TAGTCAGTGTAAGACCATGTCTGGGACATGACATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCG
27036641 ATACCTTACC
Statistics
Matches: 139, Mismatches: 21, Indels: 30
0.73 0.11 0.16
Matches are distributed among these distances:
43 1 0.01
45 9 0.06
46 62 0.45
47 42 0.30
48 22 0.16
49 1 0.01
50 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTATTCTGA
Found at i:27038704 original size:942 final size:942
Alignment explanation
Indices: 27036881--27038765 Score: 3689
Period size: 942 Copynumber: 2.0 Consensus size: 942
27036871 ATTGATAAAT
27036881 TGTTGTTGTATACTTACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCTTCTCTTTTCAT
1 TGTTGTTGTATACTTACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCTTCTCTTTTCAT
27036946 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
66 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
*
27037011 AACTGAAGCATTCAATATAGTTGGATTTATATTTTTGAATTTGGCATGTATAGGATTTAGACTTT
131 AACTGAAGCATTCAATATAGTTGGATTTATATTTTTGAATTTGACATGTATAGGATTTAGACTTT
27037076 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACTCTTCAATTTGTA
196 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACTCTTCAATTTGTA
27037141 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
261 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
27037206 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
326 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
27037271 CCTTATATTGTCTACACGGGTAGGCACATGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
391 CCTTATATTGTCTACACGGGTAGGCACATGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
*
27037336 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTTAATATGCATGA
456 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTCAATATGCATGA
*
27037401 TAATAAACACACGAGTAGAGACACGGCTATGTGTATTAGCCGTGTGAAGGGCACAGCCTAGCACA
521 TAATAAACACACGAGTAGAGACACGGCTATATGTATTAGCCGTGTGAAGGGCACAGCCTAGCACA
*
27037466 CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGTCCATATTT
586 CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGCCCATATTT
27037531 TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGGC
651 TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGGC
*
27037596 ATGTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGATTGGAGG
716 ATGTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGAGTGGAGG
27037661 ACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
781 ACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
27037726 TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTCTATAGTTGGCAAAAGTAC
846 TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTCTATAGTTGGCAAAAGTAC
*
27037791 CCGAGTTGGTTCCGAATAATTTGCGATGTGTG
911 CCGAGTTGGTTCCGAATAATTTACGATGTGTG
27037823 TGTTGTTGTATACTTACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCTTCTCTTTTCAT
1 TGTTGTTGTATACTTACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCTTCTCTTTTCAT
27037888 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
66 TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
27037953 AACTGAAGCATTCAATATAGTTGGATTTATATTTTTGAATTTGACATGTATAGGATTTAGACTTT
131 AACTGAAGCATTCAATATAGTTGGATTTATATTTTTGAATTTGACATGTATAGGATTTAGACTTT
27038018 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACTCTTCAATTTGTA
196 CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACTCTTCAATTTGTA
27038083 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
261 TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
27038148 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
326 TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
27038213 CCTTATATTGTCTACACGGGTAGGCACATGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
391 CCTTATATTGTCTACACGGGTAGGCACATGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
27038278 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTCAATATGCATGA
456 TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTCAATATGCATGA
27038343 TAATAAACACACGAGTAGAGACACGGCTATATGTATTAGCCGTGTGAAGGGCACAGCCTAGCACA
521 TAATAAACACACGAGTAGAGACACGGCTATATGTATTAGCCGTGTGAAGGGCACAGCCTAGCACA
27038408 CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGCCCATATTT
586 CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGCCCATATTT
27038473 TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGGC
651 TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGGC
* *
27038538 ATGTGCGAAGTCGTGTGACAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGAGTGGAGG
716 ATGTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGAGTGGAGG
27038603 ACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
781 ACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
27038668 TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTCTATAGTTGGCAAAAGTAC
846 TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTCTATAGTTGGCAAAAGTAC
*
27038733 CCGAGTTGGTTCCGAATGATTTACGATGTGTG
911 CCGAGTTGGTTCCGAATAATTTACGATGTGTG
27038765 T
1 T
27038766 TTTGGGCCTT
Statistics
Matches: 934, Mismatches: 9, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
942 934 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.32
Consensus pattern (942 bp):
TGTTGTTGTATACTTACTTATATGCAACTTACTAAGTTGTTATGCTTACTCCCTTCTCTTTTCAT
TTTCTTACAGTGCCGCCTAATTAGCTCAAGGATCACCGGAAGTTAGAGATATCGATCACACTATC
AACTGAAGCATTCAATATAGTTGGATTTATATTTTTGAATTTGACATGTATAGGATTTAGACTTT
CTTATTTTGTGTCATTGGGGTTTGGCCATATATATTAGCTTGGGTTGGAAACTCTTCAATTTGTA
TTAAGCCTTGAATGATGGCTAACATTCATTTGAATTTATAAAAGATGCATTATCATGGGCTTATT
TTGGTATTGGTTGGTATTTGTGTAGAACTACATATGTAAGGGTGGCAATAGGGATTGGTAAATAG
CCTTATATTGTCTACACGGGTAGGCACATGGGCATGTGACTTGGCCGTGTGAGACACACGATCTT
TCCCATGGGCGTGTGGTCAGGACGCGTGTCCCCTGCACATAAAAATTTTAAGTCAATATGCATGA
TAATAAACACACGAGTAGAGACACGGCTATATGTATTAGCCGTGTGAAGGGCACAGCCTAGCACA
CGGGTGTGTGCCTTGGCCGTGTGATATTTGGGGTTGCTAACGTCAAAAACAGAATGCCCATATTT
TTGTACATAGGCTAGTACACGGGCGTGTCATGGCTGTGTGAAAGACACGGGCCAGGCACACGGGC
ATGTGCCAAGTCGTGTGAAAACCCCTGTAGGTGTGTATTTAAAATAAATTCCACACGAGTGGAGG
ACACGAGGCATGTCCTTTTATTGCTTAGGCCGTGTAAGCCACACGGGCCATCAACACGACCATGT
TGAATTGGCCACACGGGCGTGTGCCTCTATGTCATGTGACATTTTTCTATAGTTGGCAAAAGTAC
CCGAGTTGGTTCCGAATAATTTACGATGTGTG
Found at i:27044565 original size:53 final size:54
Alignment explanation
Indices: 27044497--27044703 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 54
27044487 TTCCTTTTTA
* * *
27044497 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
27044550 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATCG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
*** * * * * * *
27044604 TGGGTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
27044659 AACTTACCAATGTCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
27044704 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 31, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
53 46 0.38
54 36 0.30
55 39 0.32
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:27045292 original size:117 final size:117
Alignment explanation
Indices: 27045086--27045321 Score: 472
Period size: 117 Copynumber: 2.0 Consensus size: 117
27045076 TTGCATATTT
27045086 ACACTTTTCCCCAAGGCTCAGAAATGAAACTTTATCCCTAAATCTTATGTTTTATGACATGCTGA
1 ACACTTTTCCCCAAGGCTCAGAAATGAAACTTTATCCCTAAATCTTATGTTTTATGACATGCTGA
27045151 TCCTTTATTTACCTACGGAAATATCAAATTCCTACTCTAACATGTATTTATG
66 TCCTTTATTTACCTACGGAAATATCAAATTCCTACTCTAACATGTATTTATG
27045203 ACACTTTTCCCCAAGGCTCAGAAATGAAACTTTATCCCTAAATCTTATGTTTTATGACATGCTGA
1 ACACTTTTCCCCAAGGCTCAGAAATGAAACTTTATCCCTAAATCTTATGTTTTATGACATGCTGA
27045268 TCCTTTATTTACCTACGGAAATATCAAATTCCTACTCTAACATGTATTTATG
66 TCCTTTATTTACCTACGGAAATATCAAATTCCTACTCTAACATGTATTTATG
27045320 AC
1 AC
27045322 CATTAGGTAT
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 119 1.00
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (117 bp):
ACACTTTTCCCCAAGGCTCAGAAATGAAACTTTATCCCTAAATCTTATGTTTTATGACATGCTGA
TCCTTTATTTACCTACGGAAATATCAAATTCCTACTCTAACATGTATTTATG
Found at i:27047809 original size:46 final size:46
Alignment explanation
Indices: 27047656--27047831 Score: 153
Period size: 46 Copynumber: 3.8 Consensus size: 46
27047646 ATTTGTGTGT
* * * * **
27047656 GAGCTAGTGTAAGAGATGTTTGGGACATACATCGGCCAT-ATTC-TGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-TGAGACGT-A
* *
27047702 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCATTGAGACG-A
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTGAGACGTA
* * * *
27047750 GGGCTAGTATAAGACATGTTTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-GAGACGTA
*
27047797 -AGCCAGTGTAAGACATGTCCGGGACATGCATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
27047832 TACAAGATGA
Statistics
Matches: 104, Mismatches: 19, Indels: 14
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 56 0.54
47 26 0.25
48 19 0.18
49 2 0.02
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTGAGACGTA
Found at i:27048196 original size:15 final size:15
Alignment explanation
Indices: 27048176--27048229 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
27048166 GTTGTTGTAT
27048176 ACTTACTTATATGCA
1 ACTTACTTATATGCA
* **
27048191 ACTTACTAAGCTGCTA
1 ACTTACTTATATGC-A
*
27048207 TGCTTACTTATATGCA
1 -ACTTACTTATATGCA
27048223 ACTTACT
1 ACTTACT
27048230 AAGCTGCTAT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
15 17 0.59
16 2 0.07
17 10 0.34
ACGTcount: A:0.30, C:0.22, G:0.09, T:0.39
Consensus pattern (15 bp):
ACTTACTTATATGCA
Found at i:27048213 original size:32 final size:32
Alignment explanation
Indices: 27048177--27048246 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
27048167 TTGTTGTATA
27048177 CTTACTTATATGCAACTTACTAAGCTGCTATG
1 CTTACTTATATGCAACTTACTAAGCTGCTATG
27048209 CTTACTTATATGCAACTTACTAAGCTGCTATG
1 CTTACTTATATGCAACTTACTAAGCTGCTATG
27048241 CTTACT
1 CTTACT
27048247 CCCTTCTCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (32 bp):
CTTACTTATATGCAACTTACTAAGCTGCTATG
Found at i:27048214 original size:17 final size:17
Alignment explanation
Indices: 27048192--27048246 Score: 60
Period size: 17 Copynumber: 3.4 Consensus size: 17
27048182 TTATATGCAA
27048192 CTTACTAAGCTGCTATG
1 CTTACTAAGCTGCTATG
* ** *
27048209 CTTACTTATATGC-A-A
1 CTTACTAAGCTGCTATG
27048224 CTTACTAAGCTGCTATG
1 CTTACTAAGCTGCTATG
27048241 CTTACT
1 CTTACT
27048247 CCCTTCTCTT
Statistics
Matches: 28, Mismatches: 8, Indels: 4
0.70 0.20 0.10
Matches are distributed among these distances:
15 10 0.36
16 2 0.07
17 16 0.57
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (17 bp):
CTTACTAAGCTGCTATG
Found at i:27057439 original size:35 final size:35
Alignment explanation
Indices: 27057390--27057492 Score: 143
Period size: 35 Copynumber: 2.9 Consensus size: 35
27057380 CTCTATTTGG
27057390 CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
1 CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
* * *
27057425 CGTGTTTCGGTTGGACTAGCTCTTATGAGCGTTGG
1 CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
** * *
27057460 CGCATTTCAATTGGACTAGCTCTTGTGAGCATT
1 CGTGTTTCGATTGGACTAGCTCTTATGAGCATT
27057493 TGGTGTATTT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 59 1.00
ACGTcount: A:0.17, C:0.18, G:0.27, T:0.37
Consensus pattern (35 bp):
CGTGTTTCGATTGGACTAGCTCTTATGAGCATTGA
Found at i:27058190 original size:18 final size:18
Alignment explanation
Indices: 27058167--27058201 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
27058157 AGTTTATATG
27058167 AGCTTACTAAGCATTCAT
1 AGCTTACTAAGCATTCAT
27058185 AGCTTACTAAGCATTCA
1 AGCTTACTAAGCATTCA
27058202 CATAATTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (18 bp):
AGCTTACTAAGCATTCAT
Found at i:27061319 original size:20 final size:20
Alignment explanation
Indices: 27061260--27061445 Score: 121
Period size: 20 Copynumber: 9.3 Consensus size: 20
27061250 AATTATTAAA
27061260 TGTTTGCACATTCGTGCCCC
1 TGTTTGCACATTCGTGCCCC
* *
27061280 TG-TT-CATACTTCGATACCCC
1 TGTTTGCACA-TTCG-TGCCCC
27061300 TGTTTGCACATTCGTGCCCC
1 TGTTTGCACATTCGTGCCCC
* * * * *
27061320 TCTTCGTAC-TTTGCTACCCC
1 TGTTTGCACATTCG-TGCCCC
* *
27061340 TGTTTGCACATTCGAGCCCT
1 TGTTTGCACATTCGTGCCCC
* **
27061360 TGTTTGTAC-TTCGGTATCCC
1 TGTTTGCACATTC-GTGCCCC
*
27061380 TATTTGCACATTCGTGCCCC
1 TGTTTGCACATTCGTGCCCC
* * *
27061400 TTTTTGTAC-TTCGGTACCCC
1 TGTTTGCACATTC-GTGCCCC
* *
27061420 TATTTGCACATACGTGCCCC
1 TGTTTGCACATTCGTGCCCC
*
27061440 TATTTG
1 TGTTTG
27061446 TACTTCAGTA
Statistics
Matches: 124, Mismatches: 32, Indels: 20
0.70 0.18 0.11
Matches are distributed among these distances:
18 3 0.02
19 15 0.12
20 89 0.72
21 14 0.11
22 3 0.02
ACGTcount: A:0.13, C:0.32, G:0.16, T:0.38
Consensus pattern (20 bp):
TGTTTGCACATTCGTGCCCC
Found at i:27061459 original size:20 final size:20
Alignment explanation
Indices: 27061362--27061461 Score: 87
Period size: 20 Copynumber: 5.0 Consensus size: 20
27061352 CGAGCCCTTG
* *
27061362 TTTGTACTTCGGTATCCCTA
1 TTTGTACTTCAGTACCCCTA
* * *
27061382 TTTGCACATTC-GTGCCCCTT
1 TTTGTAC-TTCAGTACCCCTA
*
27061402 TTTGTACTTCGGTACCCCTA
1 TTTGTACTTCAGTACCCCTA
* * *
27061422 TTTGCACAT-ACGTGCCCCTA
1 TTTGTACTTCA-GTACCCCTA
27061442 TTTGTACTTCAGTACCCCTA
1 TTTGTACTTCAGTACCCCTA
27061462 AAATATATGA
Statistics
Matches: 62, Mismatches: 14, Indels: 8
0.74 0.17 0.10
Matches are distributed among these distances:
19 3 0.05
20 55 0.89
21 4 0.06
ACGTcount: A:0.16, C:0.31, G:0.14, T:0.39
Consensus pattern (20 bp):
TTTGTACTTCAGTACCCCTA
Found at i:27061461 original size:40 final size:40
Alignment explanation
Indices: 27061262--27061461 Score: 256
Period size: 40 Copynumber: 5.0 Consensus size: 40
27061252 TTATTAAATG
** * *
27061262 TTTGCACATTCGTGCCCCTGTTCATACTTCGATACCCCTG
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * * * *
27061302 TTTGCACATTCGTGCCCCTCTTCGTACTTTGCTACCCCTG
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * *
27061342 TTTGCACATTCGAGCCCTTGTTTGTACTTCGGTATCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
*
27061382 TTTGCACATTCGTGCCCCTTTTTGTACTTCGGTACCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * *
27061422 TTTGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
1 TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
27061462 AAATATATGA
Statistics
Matches: 141, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 141 1.00
ACGTcount: A:0.14, C:0.33, G:0.15, T:0.38
Consensus pattern (40 bp):
TTTGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCCTA
Found at i:27063299 original size:27 final size:26
Alignment explanation
Indices: 27063282--27063351 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 26
27063272 ATATTAAGTC
27063282 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
**
27063309 CGCACACTTTGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
27063337 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
27063352 GTACAATTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
27 21 0.54
28 18 0.46
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.29
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:27063345 original size:28 final size:28
Alignment explanation
Indices: 27063282--27063379 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
27063272 ATATTAAGTC
*
27063282 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
27063309 CGCACACTTTGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
27063337 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
27063366 CGCACACTTAGTGC
1 CGCACACTTAGTGC
27063380 CAATCTCATG
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 21 0.34
28 22 0.35
29 19 0.31
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:27067496 original size:40 final size:40
Alignment explanation
Indices: 27067338--27067484 Score: 186
Period size: 40 Copynumber: 3.7 Consensus size: 40
27067328 ACTACAGATA
* * * *
27067338 TGTGCGATTCGATATAACTTCGACTATATATGGCACTTAG
1 TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
* * *
27067378 AGTGTGATTCAACATAGCTTTGGCTATATATGGCACTTAG
1 TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
* * *
27067418 TATGTGATTCGACATAGCTTTAGCTATATATGGCACTTAG
1 TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
* *
27067458 TGTGCGATTTGAGATAGCTTTGGCTAT
1 TGTGCGATTCGACATAGCTTTGGCTAT
27067485 GTACGACACT
Statistics
Matches: 91, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 91 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (40 bp):
TGTGCGATTCGACATAGCTTTGGCTATATATGGCACTTAG
Found at i:27073441 original size:46 final size:46
Alignment explanation
Indices: 27073391--27073566 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
27073381 TGGTTGAGCA
27073391 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
27073437 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
**
27073482 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
27073530 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27073567 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:27073547 original size:93 final size:93
Alignment explanation
Indices: 27073388--27073559 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
27073378 GGATGGTTGA
***
27073388 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
27073453 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
27073481 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
27073546 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
27073560 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:27077280 original size:46 final size:46
Alignment explanation
Indices: 27077227--27077317 Score: 137
Period size: 46 Copynumber: 2.0 Consensus size: 46
27077217 TATATATACA
*
27077227 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATC
* * * *
27077273 CATCTCATACCCGTTTCGCATTAGCCATTTGGCTTTACCACATAT
1 CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATAT
27077318 ATACACTTCC
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 40 1.00
ACGTcount: A:0.25, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATCTCACATTAGCCATTTGGCTTTACCACATATC
Found at i:27077360 original size:22 final size:22
Alignment explanation
Indices: 27077334--27077409 Score: 59
Period size: 22 Copynumber: 3.3 Consensus size: 22
27077324 TTCCACGTTC
27077334 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
*
27077356 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
27077380 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
27077403 ATCACAT
1 ATCACAT
27077410 ATATGCATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 18
0.67 0.05 0.29
Matches are distributed among these distances:
22 15 0.36
23 10 0.24
24 9 0.21
25 8 0.19
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:27077365 original size:47 final size:47
Alignment explanation
Indices: 27077331--27077734 Score: 736
Period size: 47 Copynumber: 8.6 Consensus size: 47
27077321 CACTTCCACG
* *
27077331 TTCATCACATTGGCCATTCTGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
27077378 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
27077425 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
27077472 TTCATCACATTGGCCATTCGGCATTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
27077519 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
27077566 TTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
27077613 TTCATCACGTTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
27077660 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
*
27077707 TTCATCACATTGGCCATTTGGCCTTATC
1 TTCATCACATTGGCCATTCGGCCTTATC
27077735 TCATATATAT
Statistics
Matches: 348, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 348 1.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA
Found at i:27081205 original size:37 final size:37
Alignment explanation
Indices: 27081145--27081220 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
27081135 TATTACGAAA
* * *
27081145 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
27081182 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
27081219 TC
1 TC
27081221 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:27081419 original size:47 final size:47
Alignment explanation
Indices: 27081341--27081507 Score: 217
Period size: 47 Copynumber: 3.6 Consensus size: 47
27081331 CCCTTCGGGA
** * * * * **
27081341 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
27081388 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
27081435 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
27081482 CTTATCACGCATATACACTTTCACAT
1 CTTATCACACATATACACTTTCACAT
27081508 ATGGGTTTAA
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 107 1.00
ACGTcount: A:0.28, C:0.32, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:27084758 original size:40 final size:40
Alignment explanation
Indices: 27084714--27084829 Score: 117
Period size: 40 Copynumber: 2.9 Consensus size: 40
27084704 GAATACATGT
* *
27084714 CACCAGCATG-ATTGCTCTTCGGGACCTAGCCCGGATATAA
1 CACCAGCACGAATT-CTCTTCGGAACCTAGCCCGGATATAA
* * ***
27084754 CACCAGCACGAATTCTCTTCGGAACTTAGTCCGGATACCT
1 CACCAGCACGAATTCTCTTCGGAACCTAGCCCGGATATAA
* * **
27084794 CACTAGCACGAATGCTCTTCGGAATTTAGCCCGGAT
1 CACCAGCACGAATTCTCTTCGGAACCTAGCCCGGAT
27084830 TTAGTAACTC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 61 0.95
41 3 0.05
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (40 bp):
CACCAGCACGAATTCTCTTCGGAACCTAGCCCGGATATAA
Found at i:27084854 original size:40 final size:40
Alignment explanation
Indices: 27084819--27084991 Score: 210
Period size: 40 Copynumber: 4.3 Consensus size: 40
27084809 TCTTCGGAAT
*
27084819 TTAGCCCGGATTTAGT-AACTCGCACCAATGCCTTCGGGTC
1 TTAGCCCGGATATA-TCAACTCGCACCAATGCCTTCGGGTC
* *
27084859 TTAGCCCGGATATATCAACTTGCA-CAATTGCCTTTGGGTC
1 TTAGCCCGGATATATCAACTCGCACCAA-TGCCTTCGGGTC
* *
27084899 TTAGCCCGGATATATCAATTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATCAACTCGCACCAATGCCTTCGGGTC
* * *
27084939 TTAGCCCGGATATAATC-ACTAGC-TCAATTGCCTTCGGGAC
1 TTAGCCCGGATAT-ATCAACTCGCACCAA-TGCCTTCGGGTC
27084979 TTAGCCCGGATAT
1 TTAGCCCGGATAT
27084992 CATTCAAATG
Statistics
Matches: 116, Mismatches: 12, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 6 0.05
40 105 0.91
41 5 0.04
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (40 bp):
TTAGCCCGGATATATCAACTCGCACCAATGCCTTCGGGTC
Found at i:27084862 original size:80 final size:78
Alignment explanation
Indices: 27084778--27084991 Score: 234
Period size: 80 Copynumber: 2.7 Consensus size: 78
27084768 CTCTTCGGAA
* ** *
27084778 CTTAGTCCGGATACCTCACTAGCACGAA-TGCTCTTCGGAATTTAGCCCGGATTTAGT-AACTCG
1 CTTAGCCCGGATAAATCACTAGCAC-AATTGC-CTTCGG-ATTTAGCCCGGATATA-TCAACTCG
*
27084841 CACCAATGCCTTCGGGT
62 CACAAATGCCTTCGGGT
* * * * *
27084858 CTTAGCCCGGATATATCAACTTGCACAATTGCCTTTGGGTCTTAGCCCGGATATATCAATTCGCA
1 CTTAGCCCGGATAAATC-ACTAGCACAATTGCCTTCGGAT-TTAGCCCGGATATATCAACTCGCA
27084923 CAAATGCCTTCGGGT
64 CAAATGCCTTCGGGT
* *
27084938 CTTAGCCCGGATATAATCACTAGCTCAATTGCCTTCGGGACTTAGCCCGGATAT
1 CTTAGCCCGGATA-AATCACTAGCACAATTGCCTTC-GGATTTAGCCCGGATAT
27084992 CATTCAAATG
Statistics
Matches: 113, Mismatches: 15, Indels: 12
0.81 0.11 0.09
Matches are distributed among these distances:
79 2 0.02
80 96 0.85
81 15 0.13
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (78 bp):
CTTAGCCCGGATAAATCACTAGCACAATTGCCTTCGGATTTAGCCCGGATATATCAACTCGCACA
AATGCCTTCGGGT
Found at i:27085318 original size:29 final size:29
Alignment explanation
Indices: 27085279--27085357 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27085269 CTTAATAATC
*
27085279 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27085309 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27085338 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27085358 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27085404 original size:43 final size:43
Alignment explanation
Indices: 27085339--27085484 Score: 265
Period size: 43 Copynumber: 3.4 Consensus size: 43
27085329 TGCATTTCAA
27085339 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
27085382 GCCCGCACACTTAGTGCTAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
27085425 GCTCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
27085468 GCTCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
27085485 TGAAAACCAA
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 100 1.00
ACGTcount: A:0.27, C:0.34, G:0.15, T:0.25
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:27087396 original size:37 final size:37
Alignment explanation
Indices: 27087336--27087411 Score: 116
Period size: 37 Copynumber: 2.1 Consensus size: 37
27087326 TATTACGAAA
* * *
27087336 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
*
27087373 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
27087410 TC
1 TC
27087412 CTTAGAACTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.22
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGG
Found at i:27087610 original size:47 final size:47
Alignment explanation
Indices: 27087532--27087747 Score: 297
Period size: 47 Copynumber: 4.6 Consensus size: 47
27087522 CCCTTCGGGA
* * * * * **
27087532 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* *
27087579 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
27087626 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
27087673 CTTATCACGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
27087720 CTTATCACATATATATACACTTTCACAT
1 CTTATCAC--ATATATACACTTTCACAT
27087748 ATGGGTTTAA
Statistics
Matches: 152, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
47 136 0.89
49 16 0.11
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:27092359 original size:21 final size:21
Alignment explanation
Indices: 27092333--27092372 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
27092323 GATACATTAT
27092333 TTTGTTATT-ATTTTACTTAAG
1 TTTGTTATTGA-TTTACTTAAG
27092354 TTTGTTATTGATTTACTTA
1 TTTGTTATTGATTTACTTA
27092373 TTTAACCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.23, C:0.05, G:0.10, T:0.62
Consensus pattern (21 bp):
TTTGTTATTGATTTACTTAAG
Found at i:27101640 original size:42 final size:42
Alignment explanation
Indices: 27101525--27101674 Score: 112
Period size: 43 Copynumber: 3.5 Consensus size: 42
27101515 ATTTGAGATA
* * *
27101525 TCGTGTAAGACCGTGTCTGGGACACGGGCCTCGAT-TGA-GATT
1 TCGTGTAAGACCCTGTCTGGGACA-GGGCATCGATAT-ATAATT
* * * * *
27101567 TACGTATAAGACCATGTCTAGAACATCGGCATC-ATATATAATT
1 T-CGTGTAAGACCCTGTCTGGGACA-GGGCATCGATATATAATT
27101610 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATAT-TGAATT
1 TCGTGTAAGACCCTGTCTGGGACAG-GGCATCGATATAT-AATT
* *
27101653 ACATGTAAGACCAC-GTCTGGGA
1 TCGTGTAAGACC-CTGTCTGGGA
27101675 TGTCGCCGTT
Statistics
Matches: 86, Mismatches: 15, Indels: 13
0.75 0.13 0.11
Matches are distributed among these distances:
42 30 0.35
43 55 0.64
44 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (42 bp):
TCGTGTAAGACCCTGTCTGGGACAGGGCATCGATATATAATT
Found at i:27103198 original size:26 final size:26
Alignment explanation
Indices: 27103169--27103248 Score: 151
Period size: 26 Copynumber: 3.1 Consensus size: 26
27103159 ATAGAAATTT
27103169 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
*
27103195 ATAATGGGTTAGGTAAATGTTTCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
27103221 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
27103247 AT
1 AT
27103249 GGGAATTTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.36
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:27104882 original size:27 final size:27
Alignment explanation
Indices: 27104833--27104973 Score: 189
Period size: 27 Copynumber: 5.2 Consensus size: 27
27104823 AGGAAGCGTC
* *
27104833 CTGGTGGCTATGCTACA-ATTATCTGAT
1 CTGGTGGCTCTGCCACATA-TATCTGAT
*
27104860 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
*
27104887 CTGGTGGCTATGCCACGAT-TATCTGAT
1 CTGGTGGCTCTGCCAC-ATATATCTGAT
*
27104914 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATATATCTGAT
27104941 CTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGGCTCTGCCACATATATCTG-AT
27104968 CTGGTG
1 CTGGTG
27104974 ACTTCATCAC
Statistics
Matches: 102, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
26 9 0.09
27 90 0.88
28 3 0.03
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATATATCTGAT
Found at i:27104915 original size:54 final size:53
Alignment explanation
Indices: 27104833--27104973 Score: 228
Period size: 54 Copynumber: 2.6 Consensus size: 53
27104823 AGGAAGCGTC
*
27104833 CTGGTGGCTATGCTACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
27104887 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
27104941 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
27104974 ACTTCATCAC
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.09
54 75 0.91
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:27108248 original size:37 final size:37
Alignment explanation
Indices: 27108198--27108271 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
27108188 GAATTTGGTA
27108198 TATTATGTTCAAGAACAAGAAATTCGATATGTATGCT
1 TATTATGTTCAAGAACAAGAAATTCGATATGTATGCT
*
27108235 TATTATGTTCAAGAACAAGAAATTCGATATTTATGCT
1 TATTATGTTCAAGAACAAGAAATTCGATATGTATGCT
27108272 ATCTAAGTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (37 bp):
TATTATGTTCAAGAACAAGAAATTCGATATGTATGCT
Found at i:27114255 original size:33 final size:33
Alignment explanation
Indices: 27114163--27114255 Score: 97
Period size: 28 Copynumber: 3.0 Consensus size: 33
27114153 TAATAGTCTA
* * *
27114163 GGCCTGAGCCCTATTCAGTATCAGTACAGTCTG
1 GGCCTAAGCCCTATACAGTATCAGTACAGTGTG
* *
27114196 GGACTTAGCCCTATACAGTA--A-T--AGTGTG
1 GGCCTAAGCCCTATACAGTATCAGTACAGTGTG
*
27114224 GGCCTAAGCCCAATACAGTATCAGTACAGTGT
1 GGCCTAAGCCCTATACAGTATCAGTACAGTGT
27114256 AATGCAATTA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
28 22 0.46
30 2 0.04
31 2 0.04
33 22 0.46
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (33 bp):
GGCCTAAGCCCTATACAGTATCAGTACAGTGTG
Found at i:27114632 original size:27 final size:27
Alignment explanation
Indices: 27114602--27115243 Score: 746
Period size: 27 Copynumber: 23.5 Consensus size: 27
27114592 CATAATCATG
* * *
27114602 ATTTTACCATATAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27114629 ATTTTACCCTACGGGGGCATTACAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
27114656 ATTTTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27114683 ATTTTACCCTATAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * * *
27114710 ATTTTACCCTACACGGGTATTATGGTA
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27114737 ATTTTTCCCTACAGAGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * * *
27114764 ATTTTACCCTGCAGAGGTATTATGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
27114791 ATTTTACCCTATAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27114818 ATTGTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27114845 ATTGTACCCTACAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
**
27114872 ATTTTA-CCTACAGGGGCATTATAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
27114898 ATTTTACCCTACAGGGGCACTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * **
27114925 ATTTTAACCTACAGGGGTATTACTATC
1 ATTTTACCCTACAGGGGCATTACGGTC
* * * *
27114952 ATTTTGCCTTACAGGGGTATTATGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27114979 ATTTTACCTTACAGGGGCATTACAGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27115006 ATTTTACCATACAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
*
27115033 ATTTTATCCTACAGGGGCATTACGGGTC
1 ATTTTACCCTACAGGGGCATTAC-GGTC
*
27115061 ATTTTATCCTACAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* **
27115088 ATTTTACCATTGAGGGGCATTACGACATCACGGTC
1 ATTTTACCCTACAGGGGCA-T------T-ACGGTC
* * *
27115123 ATTTTACCCTACAGTGGTATTATGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27115150 ATTTTACGCTACAGGGGCATTACGATC
1 ATTTTACCCTACAGGGGCATTACGGTC
27115177 ATTTTACCCTACAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
* *
27115204 ATTTTACCCTATAGGGGTATTACGGTC
1 ATTTTACCCTACAGGGGCATTACGGTC
27115231 ATTTTACCCTACA
1 ATTTTACCCTACA
27115244 CAGCTCAGAT
Statistics
Matches: 522, Mismatches: 83, Indels: 20
0.84 0.13 0.03
Matches are distributed among these distances:
26 23 0.04
27 449 0.86
28 28 0.05
34 2 0.00
35 20 0.04
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGCATTACGGTC
Found at i:27115173 original size:144 final size:143
Alignment explanation
Indices: 27114975--27115238 Score: 422
Period size: 144 Copynumber: 1.8 Consensus size: 143
27114965 GGGGTATTAT
* *
27114975 GGTCATTTTACCTTACAGGGGCATTACAGTCATTTTACCATACAGGGGCATTACGATCATTTTAT
1 GGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCATACAGGGGCATTACGATCATTTTAC
*
27115040 CCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGCATTACGGTCATTTTACCATTGAGGGG
66 CCTACAGGGGCATTAC-GGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCATTGAGGGG
27115105 CATTACGACATCAC
130 CATTACGACATCAC
* * **
27115119 GGTCATTTTACCCTACAGTGGTATTATGGTCATTTTACGC-TACAGGGGCATTACGATCATTTTA
1 GGTCATTTTACCCTACAGGGGCATTACAGTCATTTTAC-CATACAGGGGCATTACGATCATTTTA
* *
27115183 CCCTACAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTACGGTCATTTTACC
65 CCCTACAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACC
27115239 CTACACAGCT
Statistics
Matches: 110, Mismatches: 9, Indels: 3
0.90 0.07 0.02
Matches are distributed among these distances:
143 36 0.33
144 73 0.66
145 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (143 bp):
GGTCATTTTACCCTACAGGGGCATTACAGTCATTTTACCATACAGGGGCATTACGATCATTTTAC
CCTACAGGGGCATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTTACCATTGAGGGGC
ATTACGACATCAC
Found at i:27115183 original size:89 final size:90
Alignment explanation
Indices: 27115031--27115200 Score: 245
Period size: 89 Copynumber: 1.9 Consensus size: 90
27115021 GGCATTACGA
* *
27115031 TCATTTTATCCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGCATTACGGTCATTTTACC
1 TCATTTTACCCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGCATTACGATCATTTTACC
**
27115096 ATTGAGGGGCATTACGACATCACGG
66 ATACAGGGGCATTACGACATCACGG
* * *
27115121 TCATTTTACCCTACAGTGGTATTA-TGGTCATTTTA-CGCTACAGGGGCATTACGATCATTTTAC
1 TCATTTTACCCTACAGGGGCATTACGGGTCATTTTATC-CTACAGGGGCATTACGATCATTTTAC
*
27115184 CCTACAGGGGCATTACG
65 CATACAGGGGCATTACG
27115201 GTCATTTTAC
Statistics
Matches: 71, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
88 1 0.01
89 49 0.69
90 21 0.30
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (90 bp):
TCATTTTACCCTACAGGGGCATTACGGGTCATTTTATCCTACAGGGGCATTACGATCATTTTACC
ATACAGGGGCATTACGACATCACGG
Found at i:27117261 original size:25 final size:26
Alignment explanation
Indices: 27117233--27117292 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
27117223 TAATTAATAT
*
27117233 AAAATATTAATAATTCAAT-AAATTG
1 AAAATATTAATAATTAAATAAAATTG
* *
27117258 AAAA-ATTAAATGATTAAATAAAATTT
1 AAAATATT-AATAATTAAATAAAATTG
27117284 AAAAT-TTAA
1 AAAATATTAA
27117293 GAGAAAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (26 bp):
AAAATATTAATAATTAAATAAAATTG
Found at i:27117688 original size:22 final size:22
Alignment explanation
Indices: 27117663--27117707 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
27117653 TCAAACGATG
27117663 TTGCGGCTAAGAAGTTGAAGGC
1 TTGCGGCTAAGAAGTTGAAGGC
* * *
27117685 TTGCGGCTAGGGAGTTGAGGGC
1 TTGCGGCTAAGAAGTTGAAGGC
27117707 T
1 T
27117708 ATGGCACTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.13, G:0.42, T:0.24
Consensus pattern (22 bp):
TTGCGGCTAAGAAGTTGAAGGC
Found at i:27126303 original size:56 final size:56
Alignment explanation
Indices: 27126213--27126404 Score: 258
Period size: 56 Copynumber: 3.4 Consensus size: 56
27126203 ACCATGGCAT
*** *
27126213 CGATATATGTGTGTGAGTAAGACCACGTTGAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACCACGTTCAATACGTTGGCATCGATATGTGATTC
* * *
27126269 CAATATATGTGTACAAGTAAGACTACGTTCAATACATTGGCATCGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACCACGTTCAATACGTTGGCATCGATATGTGATTC
* * * *
27126325 CGATATATGTGTACAAGTAAGACGACGTTTAATATGTTGGCATTGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACCACGTTCAATACGTTGGCATCGATATGTGATTC
* * *
27126381 CGTTATATGTGTGCGAGTAAGACC
1 CGATATATGTGTACAAGTAAGACC
27126405 CTGTTTAGGC
Statistics
Matches: 119, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (56 bp):
CGATATATGTGTACAAGTAAGACCACGTTCAATACGTTGGCATCGATATGTGATTC
Found at i:27126422 original size:112 final size:112
Alignment explanation
Indices: 27126213--27126435 Score: 277
Period size: 112 Copynumber: 2.0 Consensus size: 112
27126203 ACCATGGCAT
***
27126213 CGATATATGTGTGTGAGTAAGACCACGTTGAATACGTTGGCATCGATATGTGATTCCAATATATG
1 CGATATATGTGTACAAGTAAGACCACGTTGAATACGTTGGCATCGATATGTGATTCCAATATATG
* *
27126278 TGTACAAGTAAGACTACGTTCAATACATTGGCATCGATATGTGATTC
66 TGTACAAGTAAGACTACGTTCAAGACAGTGGCATCGATATGTGATTC
* * * * **
27126325 CGATATATGTGTACAAGTAAGACGACGTTTAATATGTTGGCATTGATATGTGATTCCGTTATATG
1 CGATATATGTGTACAAGTAAGACCACGTTGAATACGTTGGCATCGATATGTGATTCCAATATATG
* * * * * *
27126390 TGTGCGAGTAAGAC-CCTGTTTAGGCCAGTGGCATCGATATGTGATT
66 TGTACAAGTAAGACTAC-GTTCAAGACAGTGGCATCGATATGTGATT
27126436 ACATGTAAGA
Statistics
Matches: 93, Mismatches: 17, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
111 1 0.01
112 92 0.99
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (112 bp):
CGATATATGTGTACAAGTAAGACCACGTTGAATACGTTGGCATCGATATGTGATTCCAATATATG
TGTACAAGTAAGACTACGTTCAAGACAGTGGCATCGATATGTGATTC
Found at i:27126429 original size:56 final size:54
Alignment explanation
Indices: 27126213--27126435 Score: 205
Period size: 56 Copynumber: 4.0 Consensus size: 54
27126203 ACCATGGCAT
*** * * *
27126213 CGATATATGTGTGTGAGTAAGACCACGTTGAATACGTTGGCATCGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACGACGTTTAACA-G-TGGCATCGATATGTGATTC
* * * *
27126269 CAATATATGTGTACAAGTAAGACTACGTTCAATACATTGGCATCGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACGACGTT-TA-ACAGTGGCATCGATATGTGATTC
* *
27126325 CGATATATGTGTACAAGTAAGACGACGTTTAATATGTTGGCATTGATATGTGATTC
1 CGATATATGTGTACAAGTAAGACGACGTTTAACA-G-TGGCATCGATATGTGATTC
* * * * *
27126381 CGTTATATGTGTGCGAGTAAGAC-CCTGTTTAGGCCAGTGGCATCGATATGTGATT
1 CGATATATGTGTACAAGTAAGACGAC-GTTTA--ACAGTGGCATCGATATGTGATT
27126436 ACATGTAAGA
Statistics
Matches: 139, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
54 2 0.01
55 2 0.01
56 130 0.94
57 2 0.01
58 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.24, T:0.33
Consensus pattern (54 bp):
CGATATATGTGTACAAGTAAGACGACGTTTAACAGTGGCATCGATATGTGATTC
Found at i:27128159 original size:12 final size:12
Alignment explanation
Indices: 27128140--27128169 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
27128130 TGAGGGACTA
27128140 GAGGAGAGATTT
1 GAGGAGAGATTT
*
27128152 GGGGAGAGATTT
1 GAGGAGAGATTT
27128164 GAGGAG
1 GAGGAG
27128170 TGGATCAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.50, T:0.20
Consensus pattern (12 bp):
GAGGAGAGATTT
Found at i:27130080 original size:19 final size:20
Alignment explanation
Indices: 27130056--27130093 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
27130046 GGTACCAGCA
27130056 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
27130075 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
27130094 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:27130442 original size:46 final size:46
Alignment explanation
Indices: 27130318--27130443 Score: 243
Period size: 46 Copynumber: 2.7 Consensus size: 46
27130308 AACCCGCCCC
*
27130318 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
27130364 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
27130410 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
27130444 TGCTCAACCA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.32, C:0.25, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:27137591 original size:19 final size:20
Alignment explanation
Indices: 27137567--27137604 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
27137557 GGTACCACCA
27137567 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
27137586 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
27137605 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:27137896 original size:46 final size:46
Alignment explanation
Indices: 27137829--27138000 Score: 290
Period size: 46 Copynumber: 3.7 Consensus size: 46
27137819 AACCCGCTCC
* * * **
27137829 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
*
27137875 TAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
27137921 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
27137967 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
27138001 TGCTCAACCA
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:27138019 original size:46 final size:46
Alignment explanation
Indices: 27137826--27138019 Score: 170
Period size: 46 Copynumber: 4.2 Consensus size: 46
27137816 TGTAACCCGC
* **
27137826 TCCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-C-A-CA
1 TCCT-AGTGAACTCGGACTCAACTCAACGAGTTC-GGATTTGCAACCA
* *
27137871 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTTGCATCCA
1 TCC-T-AGTGAACTCGGACTCAACTCAACGAGTTCG--GATTTGCAACCA
* *
27137921 T--AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TCCTAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATTTGCAACCA
* *
27137967 T--AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCT-CAACCA
1 TCCTAGTGAACTCGGACTCAACTCAACGAGTTCGGAT-TTGCAACCA
27138011 TCCTAGTGA
1 TCCTAGTGA
27138020 CATGTCACTT
Statistics
Matches: 128, Mismatches: 10, Indels: 21
0.81 0.06 0.13
Matches are distributed among these distances:
44 8 0.06
45 5 0.04
46 109 0.85
47 2 0.02
48 1 0.01
50 3 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (46 bp):
TCCTAGTGAACTCGGACTCAACTCAACGAGTTCGGATTTGCAACCA
Found at i:27138019 original size:92 final size:93
Alignment explanation
Indices: 27137826--27138019 Score: 252
Period size: 92 Copynumber: 2.1 Consensus size: 93
27137816 TGTAACCCGC
* *
27137826 TCCTAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCACATCCATAAGTGAACTCGGACT
1 TCCT-AGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACT
* *
27137891 CAACTCAACGAGTTCGAACATTTGCATCCA
65 CAACTCAACGAGTTCG-ACATCTGCAACCA
* * **
27137921 T--AAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTC
1 TCCTAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTC
*
27137984 AACTCAACGAGTTCG-GATGCT-CAACCA
66 AACTCAACGAGTTCGACAT-CTGCAACCA
27138011 TCCTAGTGA
1 TCCTAGTGA
27138020 CATGTCACTT
Statistics
Matches: 86, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
90 8 0.09
91 1 0.01
92 76 0.88
95 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.23
Consensus pattern (93 bp):
TCCTAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCACATCCATAAGTGAACTCGGACTC
AACTCAACGAGTTCGACATCTGCAACCA
Found at i:27138457 original size:30 final size:30
Alignment explanation
Indices: 27138423--27138482 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
27138413 ATTTAATATG
27138423 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
27138453 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
27138483 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:27139832 original size:34 final size:34
Alignment explanation
Indices: 27139785--27139857 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 34
27139775 GCATTTCTGT
*
27139785 TACTGATAGTGTAACGGGCTAAGG-CCTATACTGA
1 TACTGATACTGTAACGGGCTAAGGCCCTA-ACTGA
* *
27139819 TACTGATACTGTAATGGGCTATGGCCCTAACTGA
1 TACTGATACTGTAACGGGCTAAGGCCCTAACTGA
27139853 TACTG
1 TACTG
27139858 GACTATCACT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
34 31 0.89
35 4 0.11
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (34 bp):
TACTGATACTGTAACGGGCTAAGGCCCTAACTGA
Found at i:27144430 original size:12 final size:12
Alignment explanation
Indices: 27144413--27144442 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
27144403 TTTCAACCAT
27144413 TTCAATACTCAA
1 TTCAATACTCAA
27144425 TTCAATACTCAA
1 TTCAATACTCAA
27144437 TTCAAT
1 TTCAAT
27144443 GCCATTTACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (12 bp):
TTCAATACTCAA
Found at i:27146515 original size:23 final size:23
Alignment explanation
Indices: 27146489--27146534 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
27146479 TACAAGTTCT
*
27146489 ACTC-ATCCAGCCTCTACACTCCA
1 ACTCTATCCAACC-CTACACTCCA
*
27146512 ACTCTGTCCAACCCTACACTCCA
1 ACTCTATCCAACCCTACACTCCA
27146535 TATGGGGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.26, C:0.48, G:0.04, T:0.22
Consensus pattern (23 bp):
ACTCTATCCAACCCTACACTCCA
Found at i:27147065 original size:13 final size:13
Alignment explanation
Indices: 27147046--27147079 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
27147036 CTCCACATGT
27147046 CCGTGTGGTTTAC
1 CCGTGTGGTTTAC
*
27147059 TCGTGTGGTTTAC
1 CCGTGTGGTTTAC
27147072 CCGTGTGG
1 CCGTGTGG
27147080 GGCCCACAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.06, C:0.21, G:0.35, T:0.38
Consensus pattern (13 bp):
CCGTGTGGTTTAC
Found at i:27150305 original size:27 final size:28
Alignment explanation
Indices: 27150275--27150328 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
27150265 ACATAGGGGC
27150275 AAAATAGTCATCTTACCATATA-AGGGA
1 AAAATAGTCATCTTACCATATATAGGGA
* *
27150302 AAAATAGTCATTTTATCATATATAGGG
1 AAAATAGTCATCTTACCATATATAGGG
27150329 GGTCTAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (28 bp):
AAAATAGTCATCTTACCATATATAGGGA
Found at i:27161270 original size:29 final size:29
Alignment explanation
Indices: 27161206--27161306 Score: 159
Period size: 29 Copynumber: 3.5 Consensus size: 29
27161196 ATAGTAAGTC
* *
27161206 CGCACACTTAGTG-TTATATAATAAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
27161234 CGCACACTTAGTGCTTACATAGTCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
27161263 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCAAACT
*
27161292 TGCACACTTAGTGCT
1 CGCACACTTAGTGCT
27161307 ATGCCATTTA
Statistics
Matches: 67, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 13 0.19
29 54 0.81
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.30
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCAAACT
Found at i:27161325 original size:58 final size:57
Alignment explanation
Indices: 27161205--27161334 Score: 165
Period size: 58 Copynumber: 2.3 Consensus size: 57
27161195 TATAGTAAGT
*
27161205 CCGCACACTTAGTG-TTATATAATAAAACTCGCACACTTAGTGCTTACATAGTCAAAC
1 CCGCACACTTAGTGCTTACATAATAAAACTCGCACACTTAGTGCTTACATA-TCAAAC
* * * * *
27161262 TCGCACACTTAGTGCTTACATAATCAAACTTGCACACTTAGTGCTATGCCAT-TTAAAC
1 CCGCACACTTAGTGCTTACATAATAAAACTCGCACACTTAGTGCT-T-ACATATCAAAC
27161320 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
27161335 CAATCTCATG
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
57 13 0.21
58 46 0.73
59 1 0.02
60 3 0.05
ACGTcount: A:0.32, C:0.27, G:0.13, T:0.28
Consensus pattern (57 bp):
CCGCACACTTAGTGCTTACATAATAAAACTCGCACACTTAGTGCTTACATATCAAAC
Found at i:27177021 original size:6 final size:6
Alignment explanation
Indices: 27177010--27177048 Score: 78
Period size: 6 Copynumber: 6.5 Consensus size: 6
27177000 GAAAATGATT
27177010 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CAT
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CAT
27177049 ATTTGAAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.49
Consensus pattern (6 bp):
CATTTC
Found at i:27188947 original size:7 final size:7
Alignment explanation
Indices: 27188921--27188966 Score: 56
Period size: 7 Copynumber: 6.1 Consensus size: 7
27188911 TGTCCGTATA
27188921 TCATAATT
1 TCAT-ATT
27188929 TCATACTT
1 TCATA-TT
27188937 TCATATT
1 TCATATT
27188944 TCATATT
1 TCATATT
*
27188951 TCATATA
1 TCATATT
27188958 TCATCATT
1 TCAT-ATT
27188966 T
1 T
27188967 TCATGTACTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
7 20 0.59
8 14 0.41
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.52
Consensus pattern (7 bp):
TCATATT
Found at i:27189517 original size:7 final size:7
Alignment explanation
Indices: 27189475--27189501 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
27189465 AAATAACATT
27189475 TTTATCA
1 TTTATCA
27189482 TTTATCA
1 TTTATCA
27189489 TTTATCA
1 TTTATCA
27189496 TTTATC
1 TTTATC
27189502 GGGTATTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (7 bp):
TTTATCA
Found at i:27193667 original size:13 final size:13
Alignment explanation
Indices: 27193649--27193673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27193639 ATGATATTAT
27193649 ATTTTCTTACTTC
1 ATTTTCTTACTTC
27193662 ATTTTCTTACTT
1 ATTTTCTTACTT
27193674 ATTGTATGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.20, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTTTCTTACTTC
Found at i:27194237 original size:19 final size:19
Alignment explanation
Indices: 27194208--27194266 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
27194198 TATATTAACT
27194208 TTTATAATATTATTGGTTAA
1 TTTA-AATATTATTGGTTAA
27194228 TTTAAATATTTTATT--TTAA
1 TTTAAATA--TTATTGGTTAA
27194247 -TTAAA-ATTATTGGTTAA
1 TTTAAATATTATTGGTTAA
27194264 TTT
1 TTT
27194267 TTTAAAAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
15 5 0.15
17 5 0.15
18 7 0.21
19 8 0.24
20 4 0.12
21 5 0.15
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.58
Consensus pattern (19 bp):
TTTAAATATTATTGGTTAA
Found at i:27204114 original size:25 final size:26
Alignment explanation
Indices: 27204082--27204136 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
27204072 TTATTAAATT
*
27204082 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
27204107 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
27204132 A-ATAT
1 ATATAT
27204137 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:27204323 original size:44 final size:45
Alignment explanation
Indices: 27204274--27204368 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
27204264 TTACACCTCT
* *
27204274 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
27204318 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
27204363 ATTACA
1 ATTACA
27204369 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:27204368 original size:16 final size:16
Alignment explanation
Indices: 27204349--27204416 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
27204339 GATTTGCTAT
* *
27204349 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
27204365 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
27204381 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
27204397 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
27204413 TACA
1 TACA
27204417 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 50 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:27209848 original size:27 final size:27
Alignment explanation
Indices: 27209818--27209938 Score: 188
Period size: 27 Copynumber: 4.5 Consensus size: 27
27209808 CATATAGGAT
* *
27209818 CAAAGCAGTCATCTTACCACATAAGGG
1 CAAAACAGTCATTTTACCACATAAGGG
* *
27209845 CAAACCAGTCATTTTACCACATATGGG
1 CAAAACAGTCATTTTACCACATAAGGG
27209872 CAAAACAGTCATTTTACCACATAAGGG
1 CAAAACAGTCATTTTACCACATAAGGG
*
27209899 CAAAACAATCATTTTACCACATAAGGG
1 CAAAACAGTCATTTTACCACATAAGGG
*
27209926 CAAAATAGTCATT
1 CAAAACAGTCATT
27209939 CTATCATTTA
Statistics
Matches: 86, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 86 1.00
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (27 bp):
CAAAACAGTCATTTTACCACATAAGGG
Found at i:27213221 original size:20 final size:19
Alignment explanation
Indices: 27213191--27213230 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
27213181 CACACTCACA
27213191 TTATGATTAAATGAAAATATT
1 TTATGATTAAA--AAAATATT
27213212 TTAT-ATTAAAAAAATATT
1 TTATGATTAAAAAAATATT
27213230 T
1 T
27213231 ATAAAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.47
20 6 0.32
21 4 0.21
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
TTATGATTAAAAAAATATT
Found at i:27220164 original size:38 final size:38
Alignment explanation
Indices: 27220122--27220209 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 38
27220112 GCCTAAACCA
* * *
27220122 ACACACCATGTGAGGTTAAAATCAACCCACCCATCCCT
1 ACACACCATATGAGGATAAAATCAACCCACCCAACCCT
* * *
27220160 ACACACCAAATATGGGGATAAAATCGACCCATCCAACCCT
1 ACACACC--ATATGAGGATAAAATCAACCCACCCAACCCT
27220200 ACACACCATA
1 ACACACCATA
27220210 AAGTACCGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
38 10 0.24
40 32 0.76
ACGTcount: A:0.39, C:0.35, G:0.10, T:0.16
Consensus pattern (38 bp):
ACACACCATATGAGGATAAAATCAACCCACCCAACCCT
Found at i:27230422 original size:38 final size:38
Alignment explanation
Indices: 27230373--27230467 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 38
27230363 CAACTCCGTG
* * *
27230373 CAACCCAACACACCATGTGAGGATAAAATTGACCCACC
1 CAACCCTACACACCATATGAGGATAAAATCGACCCACC
* * *
27230411 CATCCCTACACACCAAATATGGGGATAAAATCGACCCATC
1 CAACCCTACACACC--ATATGAGGATAAAATCGACCCACC
27230451 CAACCCTACACACCATA
1 CAACCCTACACACCATA
27230468 AAGTACTGTA
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
38 15 0.31
40 33 0.69
ACGTcount: A:0.39, C:0.36, G:0.11, T:0.15
Consensus pattern (38 bp):
CAACCCTACACACCATATGAGGATAAAATCGACCCACC
Found at i:27234718 original size:15 final size:16
Alignment explanation
Indices: 27234678--27234718 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
27234668 ATTTAATTGT
27234678 TATTTATTAATTTAAC
1 TATTTATTAATTTAAC
* *
27234694 AAATTA-TAATTTAA-
1 TATTTATTAATTTAAC
27234708 TATTTATTAAT
1 TATTTATTAAT
27234719 AGAATATTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 3
0.74 0.15 0.11
Matches are distributed among these distances:
14 4 0.20
15 12 0.60
16 4 0.20
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTTATTAATTTAAC
Done.