Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: A09
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 81831061
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 3560000 characters in sequence are not A, C, G, or T
File 98 of 259
Found at i:31892974 original size:23 final size:22
Alignment explanation
Indices: 31892942--31892985 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
31892932 TATAATCCAT
* *
31892942 ACCAAATCATGCCAAATCATAA
1 ACCAAATCATACCAAAACATAA
31892964 ACCAAAGTCATACCAAAACATA
1 ACCAAA-TCATACCAAAACATA
31892986 TGTTTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.52, C:0.27, G:0.05, T:0.16
Consensus pattern (22 bp):
ACCAAATCATACCAAAACATAA
Found at i:31908745 original size:40 final size:40
Alignment explanation
Indices: 31908714--31908925 Score: 234
Period size: 40 Copynumber: 5.3 Consensus size: 40
31908704 GGACTAAGAT
31908714 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
*
31908754 CCGAAGGCATTTGTGCAAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
* *
31908794 CCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
* * ** * *
31908834 CCGAAGGCATTCGTGCGAGTTGTTAAA-TCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGAT-ACAAATTCCGGGTTAAGCC
* * * * * *
31908874 CCGAAGGCA-TTGTGTGAGTTACTAAA-ACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
31908913 CCGAAGGCATTTG
1 CCGAAGGCATTTG
31908926 AACGAGGAGC
Statistics
Matches: 152, Mismatches: 16, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
39 32 0.21
40 117 0.77
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
Found at i:31908798 original size:80 final size:80
Alignment explanation
Indices: 31908661--31908925 Score: 263
Period size: 80 Copynumber: 3.3 Consensus size: 80
31908651 TTGAATGCTG
* * ** **
31908661 TCCGGGCTAAGTCCCGAAGGC-GTTGTGCTAAG-TGA-ATATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-AAGATGACA-A-ATCCGGGTTAAGCCCCGAAGGCA
31908723 TTTGTGCGAGATAC-AAA
63 TTTGTGCGAGATACTAAA
* *
31908740 TTCCGGGTTAAGCCCCGAAGGCATTTGTGCAAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCCT
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGATGACAAA-TCCGGGTTAAGCCCCGAAGGCAT
31908804 TTGTGCGAGATACTAAA
64 TTGTGCGAGATACTAAA
* * * ** * *
31908821 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCA-TT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTT
* *
31908885 GTGTGAGTTACTAAA
66 GTGCGAGATACTAAA
* * *
31908900 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
31908926 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 23, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
79 38 0.24
80 104 0.67
81 14 0.09
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCAAGATGACAAATCCGGGTTAAGCCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:31908943 original size:79 final size:80
Alignment explanation
Indices: 31908781--31908958 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 80
31908771 AGATACAAAT
* * * *
31908781 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
** ** *
31908846 GTGCGAGTTGTTAAA
66 GAACGAGGAGCTAAA
* * * * *
31908861 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
31908925 GAACGAGGAGCTATA
66 GAACGAGGAGCTAAA
*
31908940 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
31908959 TATGTGATTT
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
78 14 0.17
79 49 0.60
80 18 0.22
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGCATTC
GAACGAGGAGCTAAA
Found at i:31922226 original size:40 final size:40
Alignment explanation
Indices: 31922159--31922415 Score: 308
Period size: 40 Copynumber: 6.5 Consensus size: 40
31922149 ACCCAAGTAT
*
31922159 CTTCGGGAT-TTAG-CCGGATATAACAACTCA-CACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACT-AGCACAAATGC
*
31922198 CCTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
31922238 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTAGCACAAATGC
* * *
31922278 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
31922318 CTTCGGGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTAGCACAAATGC
* * * *
31922358 CTTAGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
* *
31922398 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
31922416 TTATCATCCG
Statistics
Matches: 185, Mismatches: 26, Indels: 13
0.83 0.12 0.06
Matches are distributed among these distances:
38 1 0.01
39 15 0.08
40 165 0.89
41 4 0.02
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTAGCACAAATGC
Found at i:31922292 original size:80 final size:80
Alignment explanation
Indices: 31922159--31922415 Score: 387
Period size: 80 Copynumber: 3.2 Consensus size: 80
31922149 ACCCAAGTAT
* * * *
31922159 CTTCGGGAT-TTAG-CCGGATATAA-CAACTCA-CACAAATGCCCTCGGGTCTTAGCCCGGATAT
1 CTTCGGG-TCTTAGCCCGGATATAATC-ACT-AGCATAAATGCCTTCGGGACATAGCCCGGATAT
*
31922220 AGCAACTAGCACAAATGC
63 AGCAACTCGCACAAATGC
31922238 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
31922303 AACTCGCACAAATGC
66 AACTCGCACAAATGC
*
31922318 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTAGGGACATAGCCCGGATATAGC
1 CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
31922383 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* *
31922398 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
31922416 TTATCATCCG
Statistics
Matches: 166, Mismatches: 8, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
78 1 0.01
79 12 0.07
80 152 0.92
81 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (80 bp):
CTTCGGGTCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
AACTCGCACAAATGC
Found at i:31926736 original size:27 final size:27
Alignment explanation
Indices: 31926706--31926801 Score: 124
Period size: 27 Copynumber: 3.6 Consensus size: 27
31926696 ATGTACTCCC
*
31926706 GATTTACAGAATTACCGTTTTACCCTA
1 GATTTACAGAATTACAGTTTTACCCTA
*
31926733 GATTTATAGAATTACTA-TTTTACCCTTA
1 GATTTACAGAATTAC-AGTTTTACCC-TA
*
31926761 -ATTTACAGAATTACAGTTTTACCCTC
1 GATTTACAGAATTACAGTTTTACCCTA
*
31926787 GATTTACAAAATTAC
1 GATTTACAGAATTAC
31926802 TAAAATACCC
Statistics
Matches: 60, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
26 2 0.03
27 56 0.93
28 2 0.03
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.40
Consensus pattern (27 bp):
GATTTACAGAATTACAGTTTTACCCTA
Found at i:31926746 original size:54 final size:54
Alignment explanation
Indices: 31926686--31926801 Score: 135
Period size: 54 Copynumber: 2.1 Consensus size: 54
31926676 CTCGACTTGT
* * *
31926686 AAAATTACCAATGTACTCC-CGATTTACAGAATTACCGTTTTACCCTAGATTTAT
1 AAAATTACCAATGTAC-CCTCAATTTACAGAATTACAGTTTTACCCTAGATTTAC
* * * * * *
31926740 AGAATTACTATTTTACCCTTAATTTACAGAATTACAGTTTTACCCTCGATTTAC
1 AAAATTACCAATGTACCCTCAATTTACAGAATTACAGTTTTACCCTAGATTTAC
31926794 AAAATTAC
1 AAAATTAC
31926802 TAAAATACCC
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (54 bp):
AAAATTACCAATGTACCCTCAATTTACAGAATTACAGTTTTACCCTAGATTTAC
Found at i:31926811 original size:54 final size:54
Alignment explanation
Indices: 31926707--31926828 Score: 154
Period size: 54 Copynumber: 2.3 Consensus size: 54
31926697 TGTACTCCCG
* * * ***
31926707 ATTTACAGAATTACCGTTTTACCCTAGATTTATAGAATTACTATTTTACCCTTA
1 ATTTACAGAATTACAGTTTTACCCTAGATTTACAAAATTACTAAAATACCCTTA
* *
31926761 ATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTAAAATACCCTTG
1 ATTTACAGAATTACAGTTTTACCCTAGATTTACAAAATTACTAAAATACCCTTA
* *
31926815 GTTTACAAAATTAC
1 ATTTACAGAATTAC
31926829 CAAAATACCC
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.35, C:0.19, G:0.07, T:0.39
Consensus pattern (54 bp):
ATTTACAGAATTACAGTTTTACCCTAGATTTACAAAATTACTAAAATACCCTTA
Found at i:31926838 original size:54 final size:54
Alignment explanation
Indices: 31926780--31927057 Score: 213
Period size: 55 Copynumber: 5.1 Consensus size: 54
31926770 ATTACAGTTT
*
31926780 TACCCTCGATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * * **
31926834 TACCCT-GGTCTGTAAAATTGCTAAAATACCCCTGGTTTGTAAAATTACCAAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * * *** *
31926887 TACCC-CTAGTTTGTAAAATTACCAAAATACCACTAGTTTTGTGAAATTACCGAAA
1 TACCCTCGA-TTTATAAAATTACTAAAATACC-CTTGGTTTACAAAATTACCAAAA
* * * * *
31926942 TACCTTCAATTTATAAAATTACCAAAATACCCCTGATTTACAAAATTA-CAGAAA
1 TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCA-AAA
* * * * * **
31926996 TACCTTTGACTTTCTAAAAATTA-TAAAAATACCATTGGTTTACAACATTACTGAAA
1 TACCCTCGA-TTTAT-AAAATTACT-AAAATACCCTTGGTTTACAAAATTACCAAAA
31927052 TACCCT
1 TACCCT
31927058 TGGTTTGTAG
Statistics
Matches: 176, Mismatches: 39, Indels: 16
0.76 0.17 0.07
Matches are distributed among these distances:
53 45 0.26
54 46 0.26
55 47 0.27
56 38 0.22
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:31926936 original size:28 final size:27
Alignment explanation
Indices: 31926794--31926999 Score: 193
Period size: 27 Copynumber: 7.6 Consensus size: 27
31926784 CTCGATTTAC
* * **
31926794 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
*
31926821 AAAATTACCAAAATA-CCCTGGTCTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
31926847 AAAATTGCTAAAATACCCCTGGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
*
31926874 AAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGGTTTGT
* *
31926901 AAAATTACCAAAATACCACTAGTTTTGT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* * * ** *
31926929 GAAATTACCGAAATA-CCTTCAATTTAT
1 AAAATTACCAAAATACCCCT-GGTTTGT
* **
31926956 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACCAAAATACCCCTGGTTTGT
31926983 AAAATTA-CAGAAATACC
1 AAAATTACCA-AAATACC
31927000 TTTGACTTTC
Statistics
Matches: 148, Mismatches: 27, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
26 22 0.15
27 105 0.71
28 21 0.14
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGGTTTGT
Found at i:31926987 original size:82 final size:80
Alignment explanation
Indices: 31926788--31926999 Score: 214
Period size: 82 Copynumber: 2.6 Consensus size: 80
31926778 TTTACCCTCG
* * * *
31926788 ATTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCCTGGTCTGTAAAATT
1 ATTTATAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTGGTCTGTAAAATT
* * *
31926853 GCTAAAATACCCCTG
66 ACCAAAATACCCCTA
* * ** * * *
31926868 GTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAATTACCAAAATACCACTAGTTTTGTGAA
1 ATTTATAAAATTACCAAAATACCCCTGA-TTTACAAAATTACCAAAATACC-CT-GGTCTGTAAA
* *
31926932 ATTACCGAAATA-CCTTCA
63 ATTACCAAAATACCCCT-A
31926950 ATTTATAAAATTACCAAAATACCCCTGATTTACAAAATTA-CAGAAATACC
1 ATTTATAAAATTACCAAAATACCCCTGATTTACAAAATTACCA-AAATACC
31927000 TTTGACTTTC
Statistics
Matches: 106, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
80 41 0.39
81 7 0.07
82 57 0.54
83 1 0.01
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.30
Consensus pattern (80 bp):
ATTTATAAAATTACCAAAATACCCCTGATTTACAAAATTACCAAAATACCCTGGTCTGTAAAATT
ACCAAAATACCCCTA
Found at i:31927038 original size:56 final size:54
Alignment explanation
Indices: 31926761--31927055 Score: 141
Period size: 54 Copynumber: 5.4 Consensus size: 54
31926751 TTTACCCTTA
* *** * * * *
31926761 ATTTACAGAATTACAGTTTTACCCTCGATTTACAAAATTACTAAAATACC-CTTG
1 ATTTACAAAATTACAGAAATACCTTCAATTTATAAAATTACAAAAATACCAC-TG
* * ** * * * * *
31926815 GTTTACAAAATTACCA-AAATACCCT-GGTCTGTAAAATTGCTAAAATACCCCTG
1 ATTTACAAAATTA-CAGAAATACCTTCAATTTATAAAATTACAAAAATACCACTG
* ** * * * *
31926868 GTTTGTAAAATTACCA-AAATACC-CCTAGTTTGTAAAATTACCAAAATACCACTAG
1 ATTTACAAAATTA-CAGAAATACCTTC-AATTTATAAAATTACAAAAATACCACT-G
* *** * * *
31926923 TTTTGTGAAATTACCGAAATACCTTCAATTTATAAAATTACCAAAATACCCCTG
1 ATTTACAAAATTACAGAAATACCTTCAATTTATAAAATTACAAAAATACCACTG
* * * * *
31926977 ATTTACAAAATTACAGAAATACCTTTGACTTTCTAAAAATTATAAAAATACCATTG
1 ATTTACAAAATTACAGAAATACC-TTCAATTTAT-AAAATTACAAAAATACCACTG
* * *
31927033 GTTTACAACATTACTGAAATACC
1 ATTTACAAAATTACAGAAATACC
31927056 CTTGGTTTGT
Statistics
Matches: 192, Mismatches: 40, Indels: 16
0.77 0.16 0.06
Matches are distributed among these distances:
53 42 0.22
54 60 0.31
55 52 0.27
56 38 0.20
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (54 bp):
ATTTACAAAATTACAGAAATACCTTCAATTTATAAAATTACAAAAATACCACTG
Found at i:31928386 original size:25 final size:25
Alignment explanation
Indices: 31928340--31928387 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
31928330 TTATAACATG
* * *
31928340 AAAATAACCATTTTGCCTCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
*
31928365 AAAATGACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
31928388 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:31928629 original size:24 final size:24
Alignment explanation
Indices: 31928501--31928669 Score: 220
Period size: 25 Copynumber: 7.0 Consensus size: 24
31928491 AGGAAGTGCA
31928501 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
31928524 AAAGGGCTTATGCCCCAGTTAT-T
1 AAAGGGCTTATGCCCCAGTTATAT
31928547 AAAGGGCTTATGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
* *
31928572 GAAGGGCTTGTGCCCCAGTTATGAT
1 AAAGGGCTTATGCCCCAGTTAT-AT
*
31928597 AAAGGGCTTATGCCCCAGTTATAA
1 AAAGGGCTTATGCCCCAGTTATAT
*
31928621 AAAGGGCTTTTGCCCCAGTTACTA-
1 AAAGGGCTTATGCCCCAGTTA-TAT
*
31928645 AAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAG-GGCTTATGCC-CCAGTTATAT
31928670 GATAAAGCAG
Statistics
Matches: 132, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
23 45 0.34
24 31 0.23
25 56 0.42
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGGGCTTATGCCCCAGTTATAT
Found at i:31928664 original size:49 final size:47
Alignment explanation
Indices: 31928500--31928669 Score: 218
Period size: 49 Copynumber: 3.5 Consensus size: 47
31928490 GAGGAAGTGC
31928500 AAAAGGGCTTATGCCCCAGTTAT-TAAAGGGCTTATGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTAT
* * *
31928546 TAAAGGGCTTATGCCCCAGTTATGATGAAGGGCTTGTGCCCCAGTTAT
1 AAAAGGGCTTATGCCCCAGTTAT-ATAAAGGGCTTATGCCCCAGTTAT
* *
31928594 GATAAAGGGCTTATGCCCCAGTTATAAAAAGGGCTTTTGCCCCAGTTACT
1 -A-AAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTA-T
*
31928644 AAAAGAGGC-TAGGCCTCCAGTTATAT
1 AAAAG-GGCTTATGCC-CCAGTTATAT
31928670 GATAAAGCAG
Statistics
Matches: 108, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
46 22 0.20
48 30 0.28
49 33 0.31
50 23 0.21
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (47 bp):
AAAAGGGCTTATGCCCCAGTTATATAAAGGGCTTATGCCCCAGTTAT
Found at i:31928898 original size:31 final size:31
Alignment explanation
Indices: 31928862--31928925 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
31928852 CGTTTACAGT
31928862 AAAGGCTTCGGC-CTAGTAATATGAAATATGA
1 AAAGGCTTCGGCTC-AGTAATATGAAATATGA
**
31928893 AAAGGCTTCGGCTCAGTGTTATGAAATATGA
1 AAAGGCTTCGGCTCAGTAATATGAAATATGA
31928924 AA
1 AA
31928926 TATTAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCTCAGTAATATGAAATATGA
Found at i:31934418 original size:190 final size:190
Alignment explanation
Indices: 31934204--31934588 Score: 761
Period size: 190 Copynumber: 2.0 Consensus size: 190
31934194 TAGTAAAAAA
31934204 AAACTATTTTGATAATTATATAATTTTACATATTTTAATGATATTTTATAATTTAAATTTAAATG
1 AAACTATTTTGATAATTATATAATTTTACATATTTTAATGATATTTTATAATTTAAATTTAAATG
31934269 GTTAAAAGGTAAATTTATTAATAATTTAATAGAACGTAGGGTGTAATTTAGCTTAGTTATCAATT
66 GTTAAAAGGTAAATTTATTAATAATTTAATAGAACGTAGGGTGTAATTTAGCTTAGTTATCAATT
*
31934334 GAAAACATTCCACCCACCTCAGAAAATGAGAAGAATTAGGCCCATAGGGCCCTTCAGTTG
131 GAAAACATCCCACCCACCTCAGAAAATGAGAAGAATTAGGCCCATAGGGCCCTTCAGTTG
31934394 AAACTATTTTGATAATTATATAATTTTACATATTTTAATGATATTTTATAATTTAAATTTAAATG
1 AAACTATTTTGATAATTATATAATTTTACATATTTTAATGATATTTTATAATTTAAATTTAAATG
31934459 GTTAAAAGGTAAATTTATTAATAATTTAATAGAACGTAGGGTGTAATTTAGCTTAGTTATCAATT
66 GTTAAAAGGTAAATTTATTAATAATTTAATAGAACGTAGGGTGTAATTTAGCTTAGTTATCAATT
31934524 GAAAACATCCCACCCACCTCAGAAAATGAGAAGAATTAGGCCCATAGGGCCCTTCAGTTG
131 GAAAACATCCCACCCACCTCAGAAAATGAGAAGAATTAGGCCCATAGGGCCCTTCAGTTG
31934584 AAACT
1 AAACT
31934589 TGAAGACGAT
Statistics
Matches: 194, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
190 194 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (190 bp):
AAACTATTTTGATAATTATATAATTTTACATATTTTAATGATATTTTATAATTTAAATTTAAATG
GTTAAAAGGTAAATTTATTAATAATTTAATAGAACGTAGGGTGTAATTTAGCTTAGTTATCAATT
GAAAACATCCCACCCACCTCAGAAAATGAGAAGAATTAGGCCCATAGGGCCCTTCAGTTG
Found at i:31935706 original size:23 final size:23
Alignment explanation
Indices: 31935655--31935706 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
31935645 TTTATAATAT
*
31935655 AAATTTAATATTTAATTTATTCA
1 AAATTTAATATTTAAATTATTCA
*
31935678 ACATTTAATATTTCAAATTATT-A
1 AAATTTAATATTT-AAATTATTCA
31935701 AAATTT
1 AAATTT
31935707 GACATCTCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 18 0.72
24 7 0.28
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (23 bp):
AAATTTAATATTTAAATTATTCA
Found at i:31940704 original size:4 final size:4
Alignment explanation
Indices: 31940697--31940743 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
31940687 TATATATTTA
31940697 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
31940744 ATAAAGCCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:31945036 original size:10 final size:10
Alignment explanation
Indices: 31945021--31945045 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
31945011 AAATCAGTTG
31945021 AAAATAATAA
1 AAAATAATAA
31945031 AAAATAATAA
1 AAAATAATAA
31945041 AAAAT
1 AAAAT
31945046 TATTATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (10 bp):
AAAATAATAA
Found at i:31945060 original size:22 final size:22
Alignment explanation
Indices: 31945030--31945073 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
31945020 GAAAATAATA
31945030 AAAAATAATAAAAAATT-ATTAT
1 AAAAATAAT-AAAAATTAATTAT
* *
31945052 AAAATTAATTAAAATTAATTAT
1 AAAAATAATAAAAATTAATTAT
31945074 CTTTATAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AAAAATAATAAAAATTAATTAT
Found at i:31946042 original size:42 final size:42
Alignment explanation
Indices: 31945983--31946092 Score: 109
Period size: 42 Copynumber: 2.6 Consensus size: 42
31945973 TTTTATCAAA
* *
31945983 TCACCGGTA-TTCAGCCTGCTAGGTTTAAAAACCTGA-ATTCA-T
1 TCACCGGCATTTC-GCCTGCTAGG-CTAAAAACCTGATA-TCATT
** *
31946025 TCACCGGCATTTCGCCTGCTAGGCTCGAAGCCTGATATCATT
1 TCACCGGCATTTCGCCTGCTAGGCTAAAAACCTGATATCATT
*
31946067 TCACCGGCATTATAGCCTGCTAGGCT
1 TCACCGGCATT-TCGCCTGCTAGGCT
31946093 CGAAAGCCCG
Statistics
Matches: 58, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
41 11 0.19
42 31 0.53
43 16 0.28
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (42 bp):
TCACCGGCATTTCGCCTGCTAGGCTAAAAACCTGATATCATT
Found at i:31946129 original size:45 final size:45
Alignment explanation
Indices: 31946025--31946286 Score: 329
Period size: 45 Copynumber: 5.9 Consensus size: 45
31946015 CTGAATTCAT
* * * *
31946025 TCACCGGCATT-TCGCCTGCTAGGCTCGAA-GCCTG-ATA-TCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGT-ATC
31946067 TCACCGGCATTATAGCCTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAGTATC
** * *
31946112 TCACCGATATTATAGCCTGCAAGGCTCAAA-GCCCTAAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCC-GAATAGTATC
* *
31946157 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCCTAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
*
31946202 TCACTGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
* * *
31946247 TCACCGGTATTATAGCCTACTAGGCTCAAAGGCCTGAATA
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATA
31946287 ATGCTGTGCG
Statistics
Matches: 194, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
42 11 0.06
43 14 0.07
44 13 0.07
45 151 0.78
46 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
Found at i:31947199 original size:47 final size:47
Alignment explanation
Indices: 31947095--31947238 Score: 225
Period size: 47 Copynumber: 3.0 Consensus size: 47
31947085 AAAATTTTCT
* * *
31947095 TTAACTAAGTAACTTATCCGGAAATAATAAGGGCAAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGC-AAATTTAACAAGC
* * *
31947143 TCAACTAAGTAACTTGTCAGGAAATATTAAAAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
31947190 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
31947237 TT
1 TT
31947239 TAAATTCAAC
Statistics
Matches: 87, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
47 59 0.68
48 28 0.32
ACGTcount: A:0.44, C:0.15, G:0.14, T:0.27
Consensus pattern (47 bp):
TTAACTAAGTAACTTGTCCGGAAATATTAAGAGCAAATTTAACAAGC
Found at i:31953961 original size:44 final size:44
Alignment explanation
Indices: 31953742--31953983 Score: 344
Period size: 45 Copynumber: 5.5 Consensus size: 44
31953732 CCAACATTTC
* * * *
31953742 GCCTGCTAGGCTCAAA-GCCCGATA-TCATTTCACCGTCATAATA
1 GCCTGCTAGGCTCAAAGGCCCGAAAGT-ATCTCACCGGCATTATA
* *
31953785 GCCTGCTAGGCTCAAAAGCCCGAATAGTATCTCACCAGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAA-AGTATCTCACCGGCATTATA
* * * *
31953830 GCTTGCTAGGCTCAAAGGCCCTAATAGTATCTCACTGGCATTGTA
1 GCCTGCTAGGCTCAAAGGCCCGAA-AGTATCTCACCGGCATTATA
31953875 GCCTGCTAGGCTCAAAGGCCCGAAAAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCG-AAAGTATCTCACCGGCATTATA
31953920 GCCTGCTAGGCTCAAAGGCCCGAAAGTATCTCACCGGCATTATA
1 GCCTGCTAGGCTCAAAGGCCCGAAAGTATCTCACCGGCATTATA
31953964 GCCTGCTAGGCTCAAAGGCC
1 GCCTGCTAGGCTCAAAGGCC
31953984 GAATAATGCT
Statistics
Matches: 180, Mismatches: 15, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
43 16 0.09
44 48 0.27
45 113 0.63
46 3 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (44 bp):
GCCTGCTAGGCTCAAAGGCCCGAAAGTATCTCACCGGCATTATA
Found at i:31954898 original size:47 final size:48
Alignment explanation
Indices: 31954794--31954905 Score: 172
Period size: 48 Copynumber: 2.4 Consensus size: 48
31954784 AAAATTTTCT
* * * *
31954794 TTAACTAAGTAACTTATCCGGAAATAATAAGGGCAAAATTTAACAAGC
1 TTAACTAAGTAACTTGTCAGGAAATAATAAGAGCAAAATTCAACAAGC
*
31954842 TTAACTAAGTAACTTGTCAGGAAATATTAAGAGC-AAATTCAACAAGC
1 TTAACTAAGTAACTTGTCAGGAAATAATAAGAGCAAAATTCAACAAGC
31954889 TTAACTAAGTAACTTGT
1 TTAACTAAGTAACTTGT
31954906 TTGGCAAATT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
47 29 0.49
48 30 0.51
ACGTcount: A:0.44, C:0.14, G:0.14, T:0.28
Consensus pattern (48 bp):
TTAACTAAGTAACTTGTCAGGAAATAATAAGAGCAAAATTCAACAAGC
Found at i:31954913 original size:35 final size:35
Alignment explanation
Indices: 31954874--31954941 Score: 127
Period size: 35 Copynumber: 1.9 Consensus size: 35
31954864 AATATTAAGA
31954874 GCAAATTCAACAAGCTTAACTAAGTAACTTGTTTG
1 GCAAATTCAACAAGCTTAACTAAGTAACTTGTTTG
*
31954909 GCAAATTTAACAAGCTTAACTAAGTAACTTGTT
1 GCAAATTCAACAAGCTTAACTAAGTAACTTGTT
31954942 CGGAAATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.32
Consensus pattern (35 bp):
GCAAATTCAACAAGCTTAACTAAGTAACTTGTTTG
Found at i:31957822 original size:50 final size:50
Alignment explanation
Indices: 31957728--31957824 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
31957718 ACCGAAGCTC
* * *
31957728 TCTGGTACGCATAGTATCCTGCACTTAGTACTACAAATGCGACCTAACAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACAAACGCGACCTAACAA
* *
31957778 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACAAACGCGACCTAA
31957825 AACCGTCTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACAAACGCGACCTAACAA
Found at i:31979982 original size:13 final size:13
Alignment explanation
Indices: 31979964--31979997 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
31979954 GAATGAGCAT
31979964 GTGTGAAAGTCTC
1 GTGTGAAAGTCTC
31979977 GTGTGAAAGTCTC
1 GTGTGAAAGTCTC
*
31979990 GTATGAAA
1 GTGTGAAA
31979998 ATTTGAATGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.29
Consensus pattern (13 bp):
GTGTGAAAGTCTC
Found at i:31988019 original size:27 final size:27
Alignment explanation
Indices: 31987989--31988206 Score: 175
Period size: 27 Copynumber: 8.1 Consensus size: 27
31987979 ACTAAAATGT
** *
31987989 CCTCAATTTGTAAAATTACCAAAGTAC
1 CCTCAATTTACAAAATTACCAAATTAC
* ***
31988016 CCTCAATTTACAGAATTACCGTTTTAC
1 CCTCAATTTACAAAATTACCAAATTAC
**
31988043 CCTCAATTTACAAAATTACCATTTTAC
1 CCTCAATTTACAAAATTACCAAATTAC
* * * **
31988070 CCTCGATTTATAGAATTACCATTTTAC
1 CCTCAATTTACAAAATTACCAAATTAC
* ***
31988097 CCTCAATTTACAGAATTACCGTTTTAC
1 CCTCAATTTACAAAATTACCAAATTAC
* ***
31988124 CCTCAATTTACAGAATTACCGTTTTAC
1 CCTCAATTTACAAAATTACCAAATTAC
* * *
31988151 CCTCGATTTACAAAATTACTAAAATAC
1 CCTCAATTTACAAAATTACCAAATTAC
*** *
31988178 CCTTGGTTTACAAAATTACCAAAATAC
1 CCTCAATTTACAAAATTACCAAATTAC
31988205 CC
1 CC
31988207 CTAGTTTGTA
Statistics
Matches: 166, Mismatches: 25, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 166 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.34
Consensus pattern (27 bp):
CCTCAATTTACAAAATTACCAAATTAC
Found at i:31988197 original size:54 final size:54
Alignment explanation
Indices: 31987989--31988169 Score: 254
Period size: 54 Copynumber: 3.4 Consensus size: 54
31987979 ACTAAAATGT
** *** *
31987989 CCTCAATTTGTAAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTTTAC
1 CCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTAC
* *
31988043 CCTCAATTTACAAAATTACCATTTTACCCTCGATTTATAGAATTACCATTTTAC
1 CCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTAC
* * *
31988097 CCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGTTTTAC
1 CCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTAC
*
31988151 CCTCGATTTACAAAATTAC
1 CCTCAATTTACAAAATTAC
31988170 TAAAATACCC
Statistics
Matches: 112, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 112 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (54 bp):
CCTCAATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCGTTTTAC
Found at i:31988197 original size:81 final size:81
Alignment explanation
Indices: 31988000--31988180 Score: 281
Period size: 81 Copynumber: 2.2 Consensus size: 81
31987990 CTCAATTTGT
*
31988000 AAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAT
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAT
*
31988065 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* *** * *
31988081 AGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAT
31988146 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
*
31988162 AAAATTACTAAAATACCCT
1 AAAATTACCAAAATACCCT
31988181 TGGTTTACAA
Statistics
Matches: 88, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 88 1.00
ACGTcount: A:0.35, C:0.25, G:0.06, T:0.35
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAT
TTTACCCTCGATTTAC
Found at i:31988206 original size:54 final size:55
Alignment explanation
Indices: 31988148--31988369 Score: 161
Period size: 54 Copynumber: 4.1 Consensus size: 55
31988138 ATTACCGTTT
* *
31988148 TACCCTCGA-TTTACAAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
* * * * *** **
31988202 TACCC-CTAGTTTGTAAAATTACCAAAATACTAC-TGGTTTGTGAAATTACCGGAA
1 TACCCTCGACTTTGCAAAATTACCAAAATAC-CCTTGGTTTACAAAATTACCAAAA
* * * * *
31988256 TACCCTC-AATTTGTAAAATTACCAAAATACCCCTGATTTATAAAATTA-CAGAAA
1 TACCCTCGACTTTGCAAAATTACCAAAATACCCTTGGTTTACAAAATTACCA-AAA
* * * **
31988310 TACCCTTGACTTT-CTAAAAATTA-TAGAAATACCATTGGTTTACAAAATTACTGAAA
1 TACCCTCGACTTTGC--AAAATTACCA-AAATACCCTTGGTTTACAAAATTACCAAAA
31988366 TACC
1 TACC
31988370 ATTAGTTTGT
Statistics
Matches: 131, Mismatches: 27, Indels: 18
0.74 0.15 0.10
Matches are distributed among these distances:
53 4 0.03
54 86 0.66
55 7 0.05
56 34 0.26
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (55 bp):
TACCCTCGACTTTGCAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAA
Found at i:31988206 original size:81 final size:81
Alignment explanation
Indices: 31988000--31988206 Score: 216
Period size: 81 Copynumber: 2.6 Consensus size: 81
31987990 CTCAATTTGT
* * ****
31988000 AAAATTACCAAAGTACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAAAATTACCAT
1 AAAATTACCAAAATACCCTCAATTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCAT
*
31988065 TTTACCCTCGATTTAT
66 TTTACCCTCGATTTAC
* *** * **** * *
31988081 AGAATTACCATTTTACCCTCAATTTACAGAATTACCGTTTTACCCTCAATTTACAGAATTACCGT
1 AAAATTACCAAAATACCCTCAATTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCAT
31988146 TTTACCCTCGATTTAC
66 TTTACCCTCGATTTAC
* ***
31988162 AAAATTACTAAAATACCCTTGGTTTACAAAATTACCAAAATACCC
1 AAAATTACCAAAATACCCTCAATTTACAAAATTACCAAAATACCC
31988207 CTAGTTTGTA
Statistics
Matches: 106, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
81 106 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAATTTACAAAATTACCAAAATACCCTCAATTTACAAAATTACCAT
TTTACCCTCGATTTAC
Found at i:31988213 original size:27 final size:27
Alignment explanation
Indices: 31988157--31988314 Score: 133
Period size: 27 Copynumber: 5.9 Consensus size: 27
31988147 TTACCCTCGA
* * * *
31988157 TTTACAAAATTACTAAAATACCCTTGG
1 TTTATAAAATTACCAAAATACCCCTAG
*
31988184 TTTACAAAATTACCAAAATACCCCTAG
1 TTTATAAAATTACCAAAATACCCCTAG
* ** *
31988211 TTTGTAAAATTACCAAAATACTACTGG
1 TTTATAAAATTACCAAAATACCCCTAG
* * ** *
31988238 TTTGTGAAATTACCGGAATA-CCCTCAA
1 TTTATAAAATTACCAAAATACCCCT-AG
*
31988265 TTTGTAAAATTACCAAAATACCCCT-G
1 TTTATAAAATTACCAAAATACCCCTAG
31988291 ATTTATAAAATTA-CAGAAATACCC
1 -TTTATAAAATTACCA-AAATACCC
31988315 TTGACTTTCT
Statistics
Matches: 107, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 4 0.04
27 99 0.93
28 4 0.04
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (27 bp):
TTTATAAAATTACCAAAATACCCCTAG
Found at i:31988372 original size:27 final size:27
Alignment explanation
Indices: 31988148--31988369 Score: 128
Period size: 27 Copynumber: 8.1 Consensus size: 27
31988138 ATTACCGTTT
* * *
31988148 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
31988175 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * **
31988202 TACCCCTAGTTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* *** **
31988229 TACTAC-TGGTTTGTGAAATTACCGGAA
1 TAC-CCTTGGTTTACAAAATTACCAAAA
*** **
31988256 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
* * *
31988283 TACCCCTGATTTATAAAATTA-CAGAAA
1 TACCCTTGGTTTACAAAATTACCA-AAA
* *
31988310 TACCCTTGACTTT-CTAAAAATTA-TAGAAA
1 TACCCTTG-GTTTAC--AAAATTACCA-AAA
* **
31988339 TACCATTGGTTTACAAAATTACTGAAA
1 TACCCTTGGTTTACAAAATTACCAAAA
31988366 TACC
1 TACC
31988370 ATTAGTTTGT
Statistics
Matches: 157, Mismatches: 30, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
26 3 0.02
27 126 0.80
28 8 0.05
29 20 0.13
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGGTTTACAAAATTACCAAAA
Found at i:31989343 original size:25 final size:24
Alignment explanation
Indices: 31989305--31989373 Score: 111
Period size: 25 Copynumber: 2.8 Consensus size: 24
31989295 AGGATGTGCT
*
31989305 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTACC
*
31989329 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTACC
31989354 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
31989374 ATTAAAAGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
24 20 0.48
25 22 0.52
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTACC
Found at i:31989362 original size:24 final size:24
Alignment explanation
Indices: 31989305--31989386 Score: 112
Period size: 24 Copynumber: 3.4 Consensus size: 24
31989295 AGGATGTGCT
* *
31989305 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
31989329 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
31989354 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
31989377 AAAAGAGGCT
1 AAAAG-GGCT
31989387 AGGCCTCTAG
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 9 0.17
24 22 0.42
25 22 0.42
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:31991342 original size:42 final size:43
Alignment explanation
Indices: 31991265--31991356 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 43
31991255 TCCCAGACGT
* * **
31991265 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCTAGACAG
1 GGTCTTACAAGTAAATCAATATCGATGCCGATGTCCTAGACAG
*
31991308 GGTCTTACAAG-AAATCAGATAT-GATGCCGATGTCCTAGACAT
1 GGTCTTACAAGTAAATCA-ATATCGATGCCGATGTCCTAGACAG
31991350 GGTCTTA
1 GGTCTTA
31991357 TACATAAATC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.67
43 14 0.33
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (43 bp):
GGTCTTACAAGTAAATCAATATCGATGCCGATGTCCTAGACAG
Found at i:31991719 original size:50 final size:50
Alignment explanation
Indices: 31991644--31991745 Score: 195
Period size: 50 Copynumber: 2.0 Consensus size: 50
31991634 CTGATCTATG
31991644 TCCGATTTTCTTTGTTCTTGATCTAATAAAATACAAATTCAACCATTCAA
1 TCCGATTTTCTTTGTTCTTGATCTAATAAAATACAAATTCAACCATTCAA
*
31991694 TCCGATTTTCTTTGTTCTTGATCTAATACAATACAAATTCAACCATTCAA
1 TCCGATTTTCTTTGTTCTTGATCTAATAAAATACAAATTCAACCATTCAA
31991744 TC
1 TC
31991746 ATTCATTTCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.32, C:0.22, G:0.06, T:0.40
Consensus pattern (50 bp):
TCCGATTTTCTTTGTTCTTGATCTAATAAAATACAAATTCAACCATTCAA
Found at i:31997081 original size:15 final size:15
Alignment explanation
Indices: 31997063--31997101 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
31997053 AAGAAAACTC
31997063 ATAAAGAAATCCAGA
1 ATAAAGAAATCCAGA
* *
31997078 ATAAAGAGATCCAGG
1 ATAAAGAAATCCAGA
31997093 ATAAAGAAA
1 ATAAAGAAA
31997102 CCCAAGATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.59, C:0.10, G:0.18, T:0.13
Consensus pattern (15 bp):
ATAAAGAAATCCAGA
Found at i:31997110 original size:15 final size:15
Alignment explanation
Indices: 31997063--31997110 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
31997053 AAGAAAACTC
31997063 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
31997077 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
31997093 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
31997108 ATA
1 ATA
31997111 TGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:32006928 original size:19 final size:19
Alignment explanation
Indices: 32006891--32006928 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32006881 ATCAGACAGG
*
32006891 TCATAAACGGTACAGATGC
1 TCATAAACAGTACAGATGC
32006910 TCATAAACAAGTACA-ATGC
1 TCATAAAC-AGTACAGATGC
32006929 CAACGTCCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (19 bp):
TCATAAACAGTACAGATGC
Found at i:32015961 original size:16 final size:16
Alignment explanation
Indices: 32015940--32015982 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
32015930 CATGCATGCA
*
32015940 AATGTGCTTATGCTTT
1 AATGTGGTTATGCTTT
32015956 AATGTGGTTATGCTTT
1 AATGTGGTTATGCTTT
32015972 AATGTGGTTAT
1 AATGTGGTTAT
32015983 AGTTGCTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.21, C:0.07, G:0.23, T:0.49
Consensus pattern (16 bp):
AATGTGGTTATGCTTT
Found at i:32031785 original size:40 final size:40
Alignment explanation
Indices: 32031726--32032033 Score: 535
Period size: 40 Copynumber: 7.7 Consensus size: 40
32031716 GAGCATTGGA
*
32031726 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
32031766 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
32031806 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
32031846 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
32031886 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
32031926 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
32031966 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
32032006 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
32032034 ATGTGTTTGC
Statistics
Matches: 258, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 258 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:32034237 original size:24 final size:24
Alignment explanation
Indices: 32034183--32034254 Score: 94
Period size: 24 Copynumber: 3.0 Consensus size: 24
32034173 AGACATGGCC
32034183 GGTAAGCTCT-TCATGAGCTGACAAAT
1 GGTAAGCTCTAT--TGAGCTGA-AAAT
*
32034209 AGTAAGCTCTATTGAGCTGAAAAT
1 GGTAAGCTCTATTGAGCTGAAAAT
32034233 GGTAAGCTCTATTGAGCT-AAAA
1 GGTAAGCTCTATTGAGCTGAAAA
32034255 CACGCTATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 4 0.09
24 21 0.49
25 8 0.19
26 9 0.21
27 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (24 bp):
GGTAAGCTCTATTGAGCTGAAAAT
Found at i:32034630 original size:43 final size:43
Alignment explanation
Indices: 32034569--32034650 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
32034559 AATGCTATAT
*
32034569 CCCAGATATAGTCTTACATGTAA-TCTCGTATAGATGCCAATAG
1 CCCAGATATAGTCTTACATG-AAGTCTCATATAGATGCCAATAG
* * *
32034612 CCCAGCTATGGTCTTACATGAAGTCTCATATTGATGCCA
1 CCCAGATATAGTCTTACATGAAGTCTCATATAGATGCCA
32034651 TATCCTAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.06
43 32 0.94
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
CCCAGATATAGTCTTACATGAAGTCTCATATAGATGCCAATAG
Found at i:32040129 original size:40 final size:40
Alignment explanation
Indices: 32040080--32040214 Score: 243
Period size: 40 Copynumber: 3.4 Consensus size: 40
32040070 CGGATGTAAC
*
32040080 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
32040120 AACCCGCACGAATGCCTTCGGGACTTAACCTGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
32040160 AACCTGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32040200 AACCCGCACGAATGC
1 AACCCGCACGAATGC
32040215 TATGCACATA
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 90 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:32048637 original size:40 final size:40
Alignment explanation
Indices: 32048583--32048717 Score: 234
Period size: 40 Copynumber: 3.4 Consensus size: 40
32048573 CGGATGTAAC
* *
32048583 AACCAGCACGAATGCCTTCGGAACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
32048623 AACGCGCACAAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32048663 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
32048703 AACCCGCACGAATGC
1 AACCCGCACGAATGC
32048718 TATGCACATA
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:32058407 original size:28 final size:28
Alignment explanation
Indices: 32058374--32058448 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
32058364 ATTTCATGAC
32058374 TATGAATGTGATTGGGCCTGACGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
* * * *
32058402 TATGAAAGTAATTGGGCCCGATGGGCCA
1 TATGAATGTGATTGGGCCTGACGGGCCA
*
32058430 TATGAATGAGATTGGGCCT
1 TATGAATGTGATTGGGCCT
32058449 AAAGGGGCCC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.25
Consensus pattern (28 bp):
TATGAATGTGATTGGGCCTGACGGGCCA
Found at i:32061253 original size:21 final size:21
Alignment explanation
Indices: 32061227--32061266 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
32061217 TAACACCAAT
32061227 TCCACAAATCTTATAATATAA
1 TCCACAAATCTTATAATATAA
32061248 TCCACAAATCTTATAATAT
1 TCCACAAATCTTATAATAT
32061267 TAACCATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (21 bp):
TCCACAAATCTTATAATATAA
Found at i:32061830 original size:28 final size:28
Alignment explanation
Indices: 32061781--32061836 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
32061771 ATACTGTTGA
*
32061781 ATACTCAATGTCTAGCACACTAAGTGTC
1 ATACTCAATATCTAGCACACTAAGTGTC
* * *
32061809 ATACTCGATATCTCGCAGACTAAGTGTC
1 ATACTCAATATCTAGCACACTAAGTGTC
32061837 GTACAATGCC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (28 bp):
ATACTCAATATCTAGCACACTAAGTGTC
Found at i:32061892 original size:40 final size:40
Alignment explanation
Indices: 32061848--32061968 Score: 143
Period size: 40 Copynumber: 3.0 Consensus size: 40
32061838 TACAATGCCA
* *
32061848 AAGCTATCTCAAATCGCACACTAAGTGCCATATATAGCCG
1 AAGCTATATCGAATCGCACACTAAGTGCCATATATAGCCG
* * **
32061888 AAGCTATATCGAATCGCACACTAGGTGCCATGTATAGTAG
1 AAGCTATATCGAATCGCACACTAAGTGCCATATATAGCCG
* * * * *
32061928 AAGTTATGTTGAATCGCACACTAAGTGCCACAAATAGCCG
1 AAGCTATATCGAATCGCACACTAAGTGCCATATATAGCCG
32061968 A
1 A
32061969 TTTGTCGTCG
Statistics
Matches: 66, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (40 bp):
AAGCTATATCGAATCGCACACTAAGTGCCATATATAGCCG
Found at i:32062465 original size:135 final size:135
Alignment explanation
Indices: 32062298--32062568 Score: 506
Period size: 135 Copynumber: 2.0 Consensus size: 135
32062288 ATTCATGCAA
*
32062298 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCTTAGCAGCCCATATTTTCAATTTA
1 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGCAGCCCATATTTTCAATTTA
*
32062363 TTTCATATTTTAACCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
66 TTTCATATTTGAACCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
32062428 AAATC
131 AAATC
*
32062433 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGTAGCCCATATTTTCAATTTA
1 ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGCAGCCCATATTTTCAATTTA
*
32062498 TTTCATATTTGAACCACAAAGTTTTTACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
66 TTTCATATTTGAACCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
32062563 AAATC
131 AAATC
32062568 A
1 A
32062569 CTTACCAAAA
Statistics
Matches: 132, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
135 132 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.36
Consensus pattern (135 bp):
ATTTCACAACACCCATGCTTAGCCGAATTACCATAAGGCCCCTAGCAGCCCATATTTTCAATTTA
TTTCATATTTGAACCACAAAGTTTTCACATTTCACAATTTAATCCCTATTTTGCATTTTCACTAA
AAATC
Found at i:32067973 original size:20 final size:20
Alignment explanation
Indices: 32067948--32067988 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
32067938 GGCATGTATA
32067948 GCTAGACTCGTAAATGCTAC
1 GCTAGACTCGTAAATGCTAC
32067968 GCTAGACTCGTAAATGCTAC
1 GCTAGACTCGTAAATGCTAC
32067988 G
1 G
32067989 TTAGTCCTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (20 bp):
GCTAGACTCGTAAATGCTAC
Found at i:32069586 original size:40 final size:40
Alignment explanation
Indices: 32069507--32069611 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
32069497 CGATATCTCG
*
32069507 CACACTAAGTGTCATACATAGCTGAAGCTATCGCAAATCA
1 CACACTAAGTGCCATACATAGCTGAAGCTATCGCAAATCA
* * *
32069547 CACACTAAGTGCCATATATAGAC-GAAGTTAT-GTCGAATCA
1 CACACTAAGTGCCATACATAG-CTGAAGCTATCG-CAAATCA
* *
32069587 CACACTAAGTGCCACAAATAGCTGA
1 CACACTAAGTGCCATACATAGCTGA
32069612 TTTGTCATCA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
39 2 0.04
40 53 0.95
41 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGCTGAAGCTATCGCAAATCA
Found at i:32074088 original size:28 final size:27
Alignment explanation
Indices: 32073979--32074090 Score: 109
Period size: 28 Copynumber: 4.0 Consensus size: 27
32073969 ACATACTTAT
* *
32073979 ATATGGCCTACTAGGCCCAATCTCTTTC
1 ATATGGCC-ACTAGGCCCAATCACATTC
* *
32074007 ATATGGCC-CATCAGGCCCATTCACATTT
1 ATATGGCCAC-T-AGGCCCAATCACATTC
* *
32074035 ATGTGGCCCATTAGGCCCAAATCACATTC
1 ATATGG-CCACTAGGCCC-AATCACATTC
32074064 ATATGGCCACTAGGCCCAAATCACATT
1 ATATGGCCACTAGGCCC-AATCACATT
32074091 TATAGTCATG
Statistics
Matches: 69, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.01
27 1 0.01
28 51 0.74
29 16 0.23
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.27
Consensus pattern (27 bp):
ATATGGCCACTAGGCCCAATCACATTC
Found at i:32074326 original size:16 final size:16
Alignment explanation
Indices: 32074305--32074355 Score: 75
Period size: 16 Copynumber: 3.2 Consensus size: 16
32074295 ACAGCCAAAC
32074305 TTTCGGCTTTTTGGCA
1 TTTCGGCTTTTTGGCA
*
32074321 TTTCGGTTTTTTGGCA
1 TTTCGGCTTTTTGGCA
* *
32074337 TTTCGACTTTTTGGGA
1 TTTCGGCTTTTTGGCA
32074353 TTT
1 TTT
32074356 GTCGATCTAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.08, C:0.14, G:0.24, T:0.55
Consensus pattern (16 bp):
TTTCGGCTTTTTGGCA
Found at i:32074501 original size:28 final size:28
Alignment explanation
Indices: 32074469--32074524 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
32074459 GCATGCTTAA
32074469 TACATATCTCCACCAAAATCGAAACCTC
1 TACATATCTCCACCAAAATCGAAACCTC
* *
32074497 TACATATCTCTACCGAAATCGAAACCTC
1 TACATATCTCCACCAAAATCGAAACCTC
32074525 ACCTTTCACC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.34, G:0.05, T:0.23
Consensus pattern (28 bp):
TACATATCTCCACCAAAATCGAAACCTC
Found at i:32081947 original size:28 final size:28
Alignment explanation
Indices: 32081843--32081954 Score: 109
Period size: 28 Copynumber: 4.0 Consensus size: 28
32081833 ACATACCTAT
* *
32081843 ATATGGCCCACTAGGCCCAATCTCTTTC
1 ATATGGCCCACTAGGCCCAATCACATTC
* * * * *
32081871 ATATGGCCCATTAGGCTCATTTACATTT
1 ATATGGCCCACTAGGCCCAATCACATTC
* * *
32081899 ATGTGGCCCATTAGGCCCAAATCACATTG
1 ATATGGCCCACTAGGCCC-AATCACATTC
32081928 ATATGG-CCACTAGGCCCAAATCACATT
1 ATATGGCCCACTAGGCCC-AATCACATT
32081955 TACAGTCATG
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
28 57 0.83
29 12 0.17
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.29
Consensus pattern (28 bp):
ATATGGCCCACTAGGCCCAATCACATTC
Found at i:32098461 original size:93 final size:93
Alignment explanation
Indices: 32098332--32098503 Score: 274
Period size: 93 Copynumber: 1.8 Consensus size: 93
32098322 CGCCCATAAG
* **
32098332 CGAACTCGGACTCAACTCAATGAGCTCAGGTGTTCGCATCCATAAGTGAACTCCGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCCGACTCAACTCA
*
32098397 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCGGATGCCTAGTTACATCTCA
* *
32098425 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTCAGG-CATTCGCATCCATAAGTGAACTCCGACTCAACTC
32098489 AACAAGTTCGGATGC
65 AACAAGTTCGGATGC
32098504 TCAATCATCT
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 70 0.97
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCATCCATAAGTGAACTCCGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:32098497 original size:46 final size:46
Alignment explanation
Indices: 32098325--32098500 Score: 173
Period size: 46 Copynumber: 3.8 Consensus size: 46
32098315 TGTAACCCGC
* * **
32098325 CCATAAGCGAACTCGGACTCAACTCAATGAGCTCAGG-TGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
32098371 CCATAAGTGAACTCCGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
32098421 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
32098464 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
32098501 TGCTCAATCA
Statistics
Matches: 106, Mismatches: 14, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 58 0.55
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:32105921 original size:46 final size:46
Alignment explanation
Indices: 32105854--32106028 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
32105844 TGTAACCCGC
* *
32105854 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
32105900 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * *
32105950 -C-TCA-TGAACTCGGACTCAACTCAACGAGTTTGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
32105993 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
32106029 ATGCTCAACC
Statistics
Matches: 110, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 62 0.56
47 28 0.25
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:32105975 original size:93 final size:93
Alignment explanation
Indices: 32105862--32106032 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
32105852 GCCCATAAGC
* *
32105862 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32105927 CGAGTTCGGATGCCTAGTTACATCTCAT
66 CGAGTTCGGATGCCTAGTTACATCTCAT
* *
32105955 GAACTCGGACTCAACTCAACGAGTTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
32106020 CGAGTTCGGATGC
66 CGAGTTCGGATGC
32106033 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAT
Found at i:32114809 original size:37 final size:37
Alignment explanation
Indices: 32114749--32114826 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
32114739 TATTACGAAG
* * *
32114749 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
32114786 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
32114823 TCTT
1 TCTT
32114827 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:32115014 original size:47 final size:47
Alignment explanation
Indices: 32114945--32115265 Score: 509
Period size: 47 Copynumber: 6.7 Consensus size: 47
32114935 CCCTTCGGGA
* * * * *
32114945 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32114992 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32115039 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32115088 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32115137 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32115184 CTTATCACATATATACACTTTCACATTCATCACATCAGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32115231 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32115266 AGAATCCTAA
Statistics
Matches: 262, Mismatches: 9, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 165 0.63
49 96 0.37
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32115149 original size:96 final size:94
Alignment explanation
Indices: 32114945--32115265 Score: 509
Period size: 96 Copynumber: 3.4 Consensus size: 94
32114935 CCCTTCGGGA
* * * *
32114945 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
32115010 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
32115039 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCAC--ATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
32115104 ACACTTTCACATTCATCACATCGGCCATTAGGC
62 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
32115137 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
32115202 TTTCACATTCATCACATCAGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* *
32115231 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATCCATCACAT
32115266 AGAATCCTAA
Statistics
Matches: 213, Mismatches: 9, Indels: 10
0.92 0.04 0.04
Matches are distributed among these distances:
93 1 0.00
94 76 0.36
96 89 0.42
98 47 0.22
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:32117406 original size:85 final size:85
Alignment explanation
Indices: 32117285--32117455 Score: 342
Period size: 85 Copynumber: 2.0 Consensus size: 85
32117275 TGCCCATTCC
32117285 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
32117350 ACATCTTGTCCACCCATGCT
66 ACATCTTGTCCACCCATGCT
32117370 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
1 CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
32117435 ACATCTTGTCCACCCATGCT
66 ACATCTTGTCCACCCATGCT
32117455 C
1 C
32117456 ATGGCCGGCC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 86 1.00
ACGTcount: A:0.27, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTTTAGCCATA
ACATCTTGTCCACCCATGCT
Found at i:32119113 original size:40 final size:40
Alignment explanation
Indices: 32119081--32119430 Score: 587
Period size: 40 Copynumber: 8.8 Consensus size: 40
32119071 CCAGCATGAT
* * * *
32119081 TGCTCTTCGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
** *
32119121 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
32119161 TGCTCCTCGGTACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
32119201 TGCTCTTCGGGACTTAGCCCGG--ATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
32119239 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
32119279 TGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
32119319 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
32119359 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
32119399 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
32119431 CTCAATTCTC
Statistics
Matches: 290, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
38 37 0.13
40 253 0.87
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:32119369 original size:158 final size:159
Alignment explanation
Indices: 32119081--32119430 Score: 578
Period size: 158 Copynumber: 2.2 Consensus size: 159
32119071 CCAGCATGAT
* * * * **
32119081 TGCTCTTC-GAGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGAT
1 TGCTCTTCGGA-ACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGAT
*
32119145 ATATCACTAGCACGAATGCTCCTCGGTACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCG
65 ATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCG
32119210 GGACTTAGCCCGG-ATATCACTAGCACGAA
130 GGACTTAGCCCGGAATATCACTAGCACGAA
*
32119239 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATA
1 TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
*
32119304 TATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG
66 TATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG
32119369 GACTTAGCCCGGATATATCACTAGCACGAA
131 GACTTAGCCCGGA-ATATCACTAGCACGAA
*
32119399 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGAACTTAGCCCGGATATATCACT
32119431 CTCAATTCTC
Statistics
Matches: 179, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
158 130 0.73
159 2 0.01
160 47 0.26
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (159 bp):
TGCTCTTCGGAACTTAGCCCGGATATATCACTAGCACGAATGCTCCTCGGGACTTAGCACGGATA
TATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGG
GACTTAGCCCGGAATATCACTAGCACGAA
Found at i:32120708 original size:37 final size:37
Alignment explanation
Indices: 32120648--32120725 Score: 111
Period size: 37 Copynumber: 2.1 Consensus size: 37
32120638 TATTACGAAG
* * *
32120648 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
* *
32120685 TCTTACCCGGACAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
32120722 TCTT
1 TCTT
32120726 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCCCCACACGAAGTCATCGGA
Found at i:32120912 original size:47 final size:47
Alignment explanation
Indices: 32120843--32121259 Score: 692
Period size: 47 Copynumber: 8.7 Consensus size: 47
32120833 GCCCTTCGGA
* * * *
32120843 CTTATCACATTTATACACTTTCACATCCATCACATTGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32120890 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32120937 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32120984 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32121033 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32121082 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32121131 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32121178 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
32121225 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
32121260 AGAATCCTAA
Statistics
Matches: 358, Mismatches: 9, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.00
47 213 0.59
49 144 0.40
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32123204 original size:85 final size:85
Alignment explanation
Indices: 32123104--32123282 Score: 340
Period size: 85 Copynumber: 2.1 Consensus size: 85
32123094 TATTTTATTG
*
32123104 CCCATGCCCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
32123169 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
*
32123189 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
32123254 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
32123274 CCCATGCTC
1 CCCATGCTC
32123283 ATGGCCGGCC
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
85 92 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCATTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:32125273 original size:53 final size:53
Alignment explanation
Indices: 32125201--32125305 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 53
32125191 TTCCTTTTTA
* * * *
32125201 AACTTACCATTGCCCTGTCTTGACATGGTATTACGTGGTATCCTTGCCTTATG
1 AACTCACCATTGCCATGTCTTGACATGGTATTACATGGGATCCTTGCCTTATG
* * * *
32125254 AACTCACCATTGGCATGTCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 AACTCACCATTGCCATGTCTTGACATGGTATTACATGGGATCCTTGCCTTAT
32125306 TGTAGTTTAT
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
53 44 1.00
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.37
Consensus pattern (53 bp):
AACTCACCATTGCCATGTCTTGACATGGTATTACATGGGATCCTTGCCTTATG
Found at i:32130328 original size:129 final size:128
Alignment explanation
Indices: 32130091--32130330 Score: 363
Period size: 129 Copynumber: 1.9 Consensus size: 128
32130081 AAAATTTTTG
* *
32130091 AACGAAATTTTCACAAAATCATTTCGTAAAACTATAGACCATAAAAATATAAGAAAAATAAATTT
1 AACGAAATTTTCACAAAATCATTCCCTAAAACTATAGACCATAAAAATATAAGAAAAATAAATTT
* * *
32130156 TTCTACGTCGAATTTGTGGTCTCAAAACCACTATTTTGGCTAGACCTTAAATCAGACTATTAC
66 TTCTACGTCGAATTTGTGGTCCCAAAACCAATATTTTGACTAGACCTTAAATCAGACTATTAC
* * *
32130219 AACGAAAATTTTGACAGAATCATTCCCTAAAACTATAGACCATAAAAATATAAGAAAATTAAATT
1 AACG-AAATTTTCACAAAATCATTCCCTAAAACTATAGACCATAAAAATATAAGAAAAATAAATT
* * * *
32130284 TTTCTATGTTGGATTTGTGGTCCCCAAACCAATATTTTGACTAGACC
65 TTTCTACGTCGAATTTGTGGTCCCAAAACCAATATTTTGACTAGACC
32130331 CAAAATCGGG
Statistics
Matches: 99, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
128 4 0.04
129 95 0.96
ACGTcount: A:0.41, C:0.17, G:0.11, T:0.31
Consensus pattern (128 bp):
AACGAAATTTTCACAAAATCATTCCCTAAAACTATAGACCATAAAAATATAAGAAAAATAAATTT
TTCTACGTCGAATTTGTGGTCCCAAAACCAATATTTTGACTAGACCTTAAATCAGACTATTAC
Found at i:32133715 original size:38 final size:38
Alignment explanation
Indices: 32133620--32133720 Score: 130
Period size: 38 Copynumber: 2.7 Consensus size: 38
32133610 CTTAAAGACT
* ** * *
32133620 CGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCC
1 CGCAGGCTTAGTGCTGGTATTATATCAGGGATAAATCC
* *
32133658 CGTAGGCTTTGTGCTGGTATTATATCAGGGATAAATCC
1 CGCAGGCTTAGTGCTGGTATTATATCAGGGATAAATCC
*
32133696 CGCAGGCCTAGTGCTGGTATTATAT
1 CGCAGGCTTAGTGCTGGTATTATAT
32133721 TCGGGCCTTC
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 54 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (38 bp):
CGCAGGCTTAGTGCTGGTATTATATCAGGGATAAATCC
Found at i:32134014 original size:43 final size:43
Alignment explanation
Indices: 32133718--32134001 Score: 469
Period size: 43 Copynumber: 6.6 Consensus size: 43
32133708 GCTGGTATTA
* * *
32133718 TATTCGGGCCTTCGTGTCTAGCAGTCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
* * *
32133761 TATTCGGGCCTTCGTTCCTAGCAGGCTTCGTGCCGGTGATGTA
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
*
32133804 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
*
32133847 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
*
32133890 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGATGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
32133933 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
* *
32133976 TATTTGGGCCTTCGTACCTAGCAGGC
1 TATTCGGGCCTTCGTGCCTAGCAGGC
32134002 GTAATGCTGG
Statistics
Matches: 226, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 226 1.00
ACGTcount: A:0.12, C:0.25, G:0.31, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATGTG
Found at i:32136531 original size:9 final size:9
Alignment explanation
Indices: 32136503--32136536 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
32136493 AAACAAAATA
32136503 GAAAATTTT
1 GAAAATTTT
*
32136512 AGAAAAATTT
1 -GAAAATTTT
32136522 GAAAATTTT
1 GAAAATTTT
32136531 GAAAAT
1 GAAAAT
32136537 AGGGTTCACA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 14 0.64
10 8 0.36
ACGTcount: A:0.53, C:0.00, G:0.12, T:0.35
Consensus pattern (9 bp):
GAAAATTTT
Found at i:32154891 original size:40 final size:40
Alignment explanation
Indices: 32154834--32155063 Score: 336
Period size: 40 Copynumber: 5.8 Consensus size: 40
32154824 ATTTGAATAC
* * * *
32154834 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGA-TAT
32154874 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
32154914 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
32154954 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
32154994 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
32155034 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
32155064 TTGTGGTTAT
Statistics
Matches: 176, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 173 0.98
41 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:32163418 original size:40 final size:40
Alignment explanation
Indices: 32163361--32163550 Score: 247
Period size: 40 Copynumber: 4.8 Consensus size: 40
32163351 ATTTGAATAC
* * * *
32163361 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATTTT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGA-TAT
*
32163401 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
*
32163441 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * * *
32163481 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
* * *
32163521 ACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGC
32163551 TTGTGGTTAT
Statistics
Matches: 136, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 133 0.98
41 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGATGATAT
Found at i:32163494 original size:80 final size:80
Alignment explanation
Indices: 32163361--32163570 Score: 280
Period size: 80 Copynumber: 2.6 Consensus size: 80
32163351 ATTTGAATAC
* * * *
32163361 ATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
*
32163426 TGTGCAAGTTGATAT
66 CGTGCAAGTTGATAT
32163441 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGATGA-TATATCCGGGCTAAGACCCGAAGGCAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGCAT
* *
32163505 TCGTGCGAGTTGCTAT
65 TCGTGCAAGTTGATAT
* * * ** *
32163521 ACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAA
32163571 ATTCCGAAGA
Statistics
Matches: 115, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
79 8 0.07
80 104 0.90
81 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCATT
CGTGCAAGTTGATAT
Found at i:32169746 original size:39 final size:39
Alignment explanation
Indices: 32169692--32169770 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
32169682 ACGTTTAACG
32169692 AACATGTTCATTGGTACTTGATGATGAAAGTTTTGGAAT
1 AACATGTTCATTGGTACTTGATGATGAAAGTTTTGGAAT
32169731 AACATGTTCATTGGTACTTGATGATGAAAGTTTTGGAAT
1 AACATGTTCATTGGTACTTGATGATGAAAGTTTTGGAAT
32169770 A
1 A
32169771 TGTATGCGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.32, C:0.08, G:0.23, T:0.38
Consensus pattern (39 bp):
AACATGTTCATTGGTACTTGATGATGAAAGTTTTGGAAT
Found at i:32174427 original size:27 final size:27
Alignment explanation
Indices: 32174397--32174453 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
32174387 TCTGCTCACT
32174397 TTGTTCCAGTTCGTACAAATTACTCGC
1 TTGTTCCAGTTCGTACAAATTACTCGC
*
32174424 TTGTTCCAGTTCGTACAGATTACTCGC
1 TTGTTCCAGTTCGTACAAATTACTCGC
32174451 TTG
1 TTG
32174454 ATAAACTGGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.39
Consensus pattern (27 bp):
TTGTTCCAGTTCGTACAAATTACTCGC
Found at i:32179707 original size:27 final size:27
Alignment explanation
Indices: 32179650--32179793 Score: 146
Period size: 27 Copynumber: 5.3 Consensus size: 27
32179640 TATTGAAATG
* * **
32179650 CCCTCGACTTGTAAAATTACCAAAGTT-
1 CCCTCGATTTATAAAATTACC-ATTTTA
*
32179677 CCCTCGATTTACAAAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* * *
32179704 CCCTCGATTTATAGAATTATCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
** *
32179731 CCCTTAATTTATAGAATTACCATTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
* *
32179758 CCCTTGATTTATAAAATTACCGTTTTA
1 CCCTCGATTTATAAAATTACCATTTTA
*
32179785 CCATCGATT
1 CCCTCGATT
32179794 GTGAAATTAC
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 3 0.03
27 95 0.97
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
CCCTCGATTTATAAAATTACCATTTTA
Found at i:32179855 original size:27 final size:27
Alignment explanation
Indices: 32179792--32179965 Score: 138
Period size: 27 Copynumber: 6.4 Consensus size: 27
32179782 TTACCATCGA
* *
32179792 TTGTGAAATTACTAAAATACCCCT-GT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
32179818 AAGATAGAATTACCAAAATACCCCTAGT
1 TTG-TAAAATTACCAAAATACCCCTAGT
* * *
32179846 TCGTAAAATTACCAAAATACCACTGGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
32179873 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
*
32179900 TTGTAAAATTACCAAAATACCCCTAAT
1 TTGTAAAATTACCAAAATACCCCTAGT
** * *
32179927 TTACAAAGTTA-CAGAAATACCCTTGAGT
1 TTGTAAAATTACCA-AAATACCCCT-AGT
*
32179955 TTCTAAAATTA
1 TTGTAAAATTA
32179966 TGGAAATACC
Statistics
Matches: 116, Mismatches: 26, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
26 6 0.05
27 93 0.80
28 17 0.15
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:32179980 original size:28 final size:27
Alignment explanation
Indices: 32179925--32179992 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
32179915 AATACCCCTA
* ** *
32179925 ATTTACAAAGTTACAGAAATACCCTTG
1 ATTTACAAAATTATGGAAATACCATTG
32179952 AGTTT-CTAAAATTATGGAAATACCATTG
1 A-TTTAC-AAAATTATGGAAATACCATTG
32179980 ATTTACAAAATTA
1 ATTTACAAAATTA
32179993 CTAAAATACC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
27 12 0.35
28 22 0.65
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (27 bp):
ATTTACAAAATTATGGAAATACCATTG
Found at i:32179999 original size:27 final size:27
Alignment explanation
Indices: 32179904--32180006 Score: 95
Period size: 27 Copynumber: 3.8 Consensus size: 27
32179894 CTCAATTTGT
* * *
32179904 AAAATTACCAAAATACCCCTAATTTAC
1 AAAATTACTAAAATACCCTTGATTTAC
*
32179931 AAAGTTAC-AGAAATACCCTTGAGTTT-C
1 AAAATTACTA-AAATACCCTTGA-TTTAC
* *
32179958 TAAAATTA-TGGAAATACCATTGATTTAC
1 -AAAATTACT-AAAATACCCTTGATTTAC
32179986 AAAATTACTAAAATACCCTTG
1 AAAATTACTAAAATACCCTTG
32180007 GTTTGTAGAT
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
26 1 0.02
27 38 0.62
28 22 0.36
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTTGATTTAC
Found at i:32180128 original size:27 final size:26
Alignment explanation
Indices: 32180062--32180128 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 26
32180052 ATACCCCTAA
*
32180062 TAGGTAAAAAGACCGTAAAGCCCTTG
1 TAGGTAAAATGACCGTAAAGCCCTTG
*
32180088 TAGAGTAAAGTGACCGTAATA-CCCTTG
1 TAG-GTAAAATGACCGTAA-AGCCCTTG
32180115 TATGGTAAAATGAC
1 TA-GGTAAAATGAC
32180129 GAATATGCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 3 0.09
27 30 0.86
28 2 0.06
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (26 bp):
TAGGTAAAATGACCGTAAAGCCCTTG
Found at i:32180957 original size:26 final size:26
Alignment explanation
Indices: 32180928--32181025 Score: 144
Period size: 26 Copynumber: 3.8 Consensus size: 26
32180918 GAGGAAGTGC
* * *
32180928 AAAAAGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
32180954 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
*
32180980 AAAAGGGCTTATACCCCAGTTTACTG
1 AAAAGGGCTTATGCCCCAGTTTACTG
32181006 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
32181026 CTTAAAGAGG
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
25 9 0.14
26 56 0.86
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACTG
Found at i:32181229 original size:42 final size:42
Alignment explanation
Indices: 32181170--32181261 Score: 132
Period size: 42 Copynumber: 2.2 Consensus size: 42
32181160 TAGTCTCCCC
** * *
32181170 AAATGGGCTTGCATACAT-TCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCT-ATTGACATTACATGTAATATTG
32181212 AAATGGGCTTGCATACATCTATTGACATTACATGTAATATTG
1 AAATGGGCTTGCATACATCTATTGACATTACATGTAATATTG
32181254 AAATGGGC
1 AAATGGGC
32181262 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 44 0.98
43 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCTATTGACATTACATGTAATATTG
Found at i:32183619 original size:27 final size:27
Alignment explanation
Indices: 32183600--32183745 Score: 202
Period size: 27 Copynumber: 5.4 Consensus size: 27
32183590 ATTACCAAAG
*
32183600 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
32183627 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
** **
32183654 TACCCTTAATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
32183681 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
32183708 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
32183735 TACCCTCGATT
1 TACCCTCGATT
32183746 GTGAAATTAC
Statistics
Matches: 107, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 107 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:32183809 original size:27 final size:27
Alignment explanation
Indices: 32183779--32183900 Score: 106
Period size: 27 Copynumber: 4.5 Consensus size: 27
32183769 TAGGATAGAC
32183779 TTACCAAAATACCCCTAGTTTATAAAA
1 TTACCAAAATACCCCTAGTTTATAAAA
* * * * *
32183806 TTACCAAAGTACCACTGGTTTGTGAAA
1 TTACCAAAATACCCCTAGTTTATAAAA
* * *
32183833 TTACCGAAATA-CCCTCAATTTGTAAAA
1 TTACCAAAATACCCCT-AGTTTATAAAA
* *
32183860 TTACCAAAATACCCCT-GATTTACAAAG
1 TTACCAAAATACCCCTAG-TTTATAAAA
32183887 TTA-CAGAAATACCC
1 TTACCA-AAATACCC
32183901 TTGACTTTCT
Statistics
Matches: 75, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
26 5 0.07
27 66 0.88
28 4 0.05
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (27 bp):
TTACCAAAATACCCCTAGTTTATAAAA
Found at i:32183951 original size:27 final size:27
Alignment explanation
Indices: 32183912--32183963 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
32183902 TGACTTTCTA
32183912 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
32183939 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
32183964 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:32186137 original size:39 final size:39
Alignment explanation
Indices: 32186083--32186393 Score: 487
Period size: 39 Copynumber: 8.0 Consensus size: 39
32186073 AAGACACTGA
*
32186083 AAATGTATCCGGGCTAAAATCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
32186122 AAATGTATCCGGGCTAAAGTCCCGCAAGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
32186161 AAATATATCCGGGCTAAAGTCTCGCAGGCTTCGTGCTAG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32186200 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
32186239 AAATGTATCCGGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32186278 AAATGTATCCGGGCCAAAGTCCGGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
32186317 AAATGTATCCGGGCCAAAGTCCGGCAGGCTTCATGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
32186356 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
32186394 ATAATATAAT
Statistics
Matches: 251, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 251 1.00
ACGTcount: A:0.23, C:0.25, G:0.29, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:32188744 original size:16 final size:16
Alignment explanation
Indices: 32188723--32188753 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
32188713 CAAATATGGG
32188723 CATGACATTCTGCATA
1 CATGACATTCTGCATA
*
32188739 CATGACATTTTGCAT
1 CATGACATTCTGCAT
32188754 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (16 bp):
CATGACATTCTGCATA
Found at i:32189042 original size:42 final size:42
Alignment explanation
Indices: 32188977--32189068 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
32188967 TAGTCTCCCC
* ** *
32188977 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
32189019 AACTGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
32189061 AAATGGGC
1 AAATGGGC
32189069 CTAAGGGCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:32189169 original size:31 final size:31
Alignment explanation
Indices: 32189092--32189170 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
32189082 CGTTTGCAGT
* * *
32189092 AAAGGCTTCGGCCTAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATAATTTATGA
32189123 AAAGGCTTCGGCCCAGTGATATAATTTATGA
1 AAAGGCTTCGGCCCAGTGATATAATTTATGA
32189154 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
32189171 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATAATTTATGA
Found at i:32191457 original size:27 final size:27
Alignment explanation
Indices: 32191438--32191583 Score: 211
Period size: 27 Copynumber: 5.4 Consensus size: 27
32191428 ATTACCAAAG
*
32191438 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
**
32191465 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
32191492 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
32191519 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
32191546 TACCCTCGATTTATAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
32191573 TACCCTCGATT
1 TACCCTCGATT
32191584 GTGAAATTTC
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.27, C:0.21, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:32191645 original size:27 final size:27
Alignment explanation
Indices: 32191615--32191713 Score: 128
Period size: 27 Copynumber: 3.7 Consensus size: 27
32191605 TGTAGGATAG
32191615 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * *
32191642 AATTACTAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
32191669 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
32191696 AATTACCAAAATACCCCT
1 AATTACCAAAATACCCCT
32191714 GATTTACAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.05
27 52 0.88
28 4 0.07
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:32191656 original size:54 final size:53
Alignment explanation
Indices: 32191573--32191714 Score: 137
Period size: 54 Copynumber: 2.7 Consensus size: 53
32191563 ATTACCGTTT
* * * *
32191573 TACCCTCGA-TTGTGAAATTTCTGAAATACCCCTGTAGGAT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACTAAAATACCCCTGTAGG-TGA-AATTACCAAAA
* * ** *
32191626 TACCC-CTAGTTTGTAAAATTACTAAAATACCACTGGTTTGTGAAATTACCGAAA
1 TACCCTC-AATTTGTAAAATTACTAAAATACCCCT-GTAGGTGAAATTACCAAAA
*
32191680 TACCCTCAATTTGTAAAATTACCAAAATACCCCTG
1 TACCCTCAATTTGTAAAATTACTAAAATACCCCTG
32191715 ATTTACAAAG
Statistics
Matches: 72, Mismatches: 12, Indels: 10
0.77 0.13 0.11
Matches are distributed among these distances:
52 1 0.01
53 6 0.08
54 60 0.83
55 5 0.07
ACGTcount: A:0.37, C:0.22, G:0.12, T:0.30
Consensus pattern (53 bp):
TACCCTCAATTTGTAAAATTACTAAAATACCCCTGTAGGTGAAATTACCAAAA
Found at i:32191734 original size:54 final size:54
Alignment explanation
Indices: 32191635--32191739 Score: 140
Period size: 54 Copynumber: 1.9 Consensus size: 54
32191625 ATACCCCTAG
* * ** *
32191635 TTTGTAAAATTACTAAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAA
1 TTTGTAAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCCTCAA
*
32191689 TTTGTAAAATTACCAAAATACCCCTGATTT-ACAAAGTTACAGAAATACCCT
1 TTTGTAAAATTACCAAAATACCACTGATTTGACAAA-TTACAGAAATACCCT
32191740 TGACTTTCTA
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
53 3 0.07
54 41 0.93
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCACTGATTTGACAAATTACAGAAATACCCTCAA
Found at i:32191789 original size:27 final size:27
Alignment explanation
Indices: 32191750--32191801 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
32191740 TGACTTTCTA
32191750 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
32191777 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
32191802 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.35
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:32192749 original size:26 final size:26
Alignment explanation
Indices: 32192720--32192817 Score: 153
Period size: 26 Copynumber: 3.8 Consensus size: 26
32192710 GAGGAAGTGC
* *
32192720 AAAAAGGCTTATGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
32192746 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
32192772 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
32192798 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
32192818 GTTAAAAAGG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
25 10 0.15
26 56 0.85
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:32192798 original size:52 final size:51
Alignment explanation
Indices: 32192720--32192829 Score: 170
Period size: 52 Copynumber: 2.2 Consensus size: 51
32192710 GAGGAAGTGC
*
32192720 AAAAAGGCTTATGCCCTAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTT-TGCCCCAGTTTATTG
* *
32192772 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAG-TTGTT-
1 AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATTG
32192821 AAAAAGGCT
1 AAAAAGGCT
32192830 AGGCATCCAG
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
49 8 0.15
50 4 0.07
51 8 0.15
52 34 0.63
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (51 bp):
AAAAAGGCTTATGCCCCAGTTTACCGAAAAGGGCTTTGCCCCAGTTTATTG
Found at i:32193021 original size:42 final size:42
Alignment explanation
Indices: 32192962--32193053 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
32192952 TAGTCTCCCC
* ** *
32192962 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
*
32193004 AAATGGGCTTGCATACATCCATTGACATTACATGTGATGTTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
32193046 AAATGGGC
1 AAATGGGC
32193054 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.28, C:0.14, G:0.23, T:0.35
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:32193154 original size:31 final size:31
Alignment explanation
Indices: 32193077--32193155 Score: 122
Period size: 31 Copynumber: 2.5 Consensus size: 31
32193067 CGTTTGCAGT
* * * *
32193077 AAAGGCTTCGGCCTAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATAATTTATAA
32193108 AAAGGCTTCGGCCCAGTGATATAATTTATAA
1 AAAGGCTTCGGCCCAGTGATATAATTTATAA
32193139 AAAGGCTTCGGCCCAGT
1 AAAGGCTTCGGCCCAGT
32193156 AACCGTTAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATAATTTATAA
Found at i:32195125 original size:27 final size:27
Alignment explanation
Indices: 32195081--32195225 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
32195071 ATTTCCAAAG
* *
32195081 TACCCTC-ATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
32195107 TACCCTCGATTTATTGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
32195134 TATCCTCGATTTATAGAATTATTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
32195161 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
32195188 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
32195215 TACCCTCGATT
1 TACCCTCGATT
32195226 GTGAAATTAC
Statistics
Matches: 101, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
26 7 0.07
27 94 0.93
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.43
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:32195247 original size:27 final size:26
Alignment explanation
Indices: 32195217--32195359 Score: 85
Period size: 27 Copynumber: 5.3 Consensus size: 26
32195207 TACCGTTTTA
**
32195217 CCCTCGATTGTGAAATTACTGAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
*
32195244 CCCT-ATAG-GATAGAATTACCAAAATAC
1 CCCTGATTGTG--A-AATTACCAAAATAC
* *
32195271 CCCTAGTTTGTAAAATTACCAAAATAC
1 CCCT-GATTGTGAAATTACCAAAATAC
* * **
32195298 CACTGGTTTGTGAAATTACTGAAATA-
1 CCCT-GATTGTGAAATTACCAAAATAC
* * *
32195324 CCCTCAATTTATAAAATTACCAAAATAC
1 CCCT-GA-TTGTGAAATTACCAAAATAC
32195352 CCCTGATT
1 CCCTGATT
32195360 TTCAAAGTTA
Statistics
Matches: 88, Mismatches: 20, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
24 1 0.01
25 3 0.03
26 6 0.07
27 71 0.81
28 5 0.06
29 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.29
Consensus pattern (26 bp):
CCCTGATTGTGAAATTACCAAAATAC
Found at i:32195360 original size:27 final size:27
Alignment explanation
Indices: 32195257--32195394 Score: 113
Period size: 27 Copynumber: 5.1 Consensus size: 27
32195247 TATAGGATAG
32195257 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* * *
32195284 AATTACCAAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
** * *
32195311 AATTACTGAAATA-CCCTCAATTTATAA
1 AATTACCAAAATACCCCT-GATTTGTAA
32195338 AATTACCAAAATACCCCTGATTT-TCAA
1 AATTACCAAAATACCCCTGATTTGT-AA
* * *
32195365 AGTTA-CAGAAATACCCTTGACTTTCTAA
1 AATTACCA-AAATACCCCTGA-TTTGTAA
32195393 AA
1 AA
32195395 ATTATGGAAG
Statistics
Matches: 88, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
26 6 0.07
27 71 0.81
28 10 0.11
29 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:32195422 original size:28 final size:27
Alignment explanation
Indices: 32195392--32195443 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
32195382 TGACTTTCTA
*
32195392 AAAATTATGGAAGTACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
* *
32195419 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATGGAAATACCATTGGTTT
32195444 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:32196393 original size:26 final size:26
Alignment explanation
Indices: 32196363--32196510 Score: 221
Period size: 26 Copynumber: 5.8 Consensus size: 26
32196353 GAGGAAGTGC
*
32196363 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
32196389 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
32196415 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
**
32196441 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
32196467 AAAAGGGCTT-TGCCTCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
32196492 AAAA-GGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
32196511 ATTAAAGAGG
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
24 14 0.13
25 16 0.14
26 81 0.73
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:32196445 original size:52 final size:52
Alignment explanation
Indices: 32196363--32196510 Score: 257
Period size: 52 Copynumber: 2.9 Consensus size: 52
32196353 GAGGAAGTGC
*
32196363 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
32196415 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
*
32196467 AAAAGGGCTT-TGCCTCAGTTTACCGAAAA-GGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTT
32196511 ATTAAAGAGG
Statistics
Matches: 94, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
49 10 0.11
50 5 0.05
51 18 0.19
52 61 0.65
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (52 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCCAGTTTATTG
Found at i:32196714 original size:42 final size:42
Alignment explanation
Indices: 32196655--32196746 Score: 139
Period size: 42 Copynumber: 2.2 Consensus size: 42
32196645 TAGTCTCCCC
* ** * *
32196655 AAATGGGCTTGCATACATTCATTGGTATTTCATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
32196697 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
32196739 AAATGGGC
1 AAATGGGC
32196747 CTAAGGGCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATACTG
Found at i:32196805 original size:31 final size:31
Alignment explanation
Indices: 32196770--32196846 Score: 136
Period size: 31 Copynumber: 2.5 Consensus size: 31
32196760 CATTTGCAGT
32196770 AAAGGCTTCGGCCCAATGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
* *
32196801 AAAGGCTTCGGCCTAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAATGATATGATTTATGA
32196832 AAAGGCTTCGGCCCA
1 AAAGGCTTCGGCCCA
32196847 GTAACCGTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAATGATATGATTTATGA
Found at i:32199963 original size:43 final size:43
Alignment explanation
Indices: 32199892--32200053 Score: 209
Period size: 43 Copynumber: 3.8 Consensus size: 43
32199882 CTTAAATTCA
*
32199892 TTCACCGGCATT-TTGCCTGCTAGGCTCGAAGCCTGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAT
* * * *
32199934 TTCACCGGCATTATAGCTTGCTAGGCTCGAGGCTTGACATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAT
* * * * * *
32199977 TTTACTGGTATTATAACCTGCTAGGCTCGAGGCCCGATATTAT
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAT
*
32200020 TTCACTGGCATTATAGCCTGCTAGGCTCGAAGCC
1 TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCC
32200054 CGAATGGTAC
Statistics
Matches: 102, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 12 0.12
43 90 0.88
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.32
Consensus pattern (43 bp):
TTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCTGATATTAT
Found at i:32213025 original size:30 final size:30
Alignment explanation
Indices: 32212991--32213051 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
32212981 TCCTTAACTC
32212991 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
32213021 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
32213051 A
1 A
32213052 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:32216041 original size:27 final size:27
Alignment explanation
Indices: 32216002--32216179 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
32215992 ATGTTGAGTC
* * * *
32216002 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32216029 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32216056 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32216084 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32216111 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
* *
32216138 CGAACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
32216165 CACACACTTAGTGCT
1 CGCACACTTAGTGCT
32216180 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:32216145 original size:82 final size:81
Alignment explanation
Indices: 32216023--32216178 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
32216013 TGCTATATAA
* * * *
32216023 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGAACACTTAGTGCAACATAGTCAAA-TCACA
32216088 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
32216105 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGAACACTTAGTGCAACATAGTCAAATCACA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGAACACTTAGTGCAACATAGTCAAATCACA
32216169 CACTTAGTGC
65 CACTTAGTGC
32216179 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.77
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGAACACTTAGTGCAACATAGTCAAATCACAC
ACTTAGTGCCGCATGG
Found at i:32223935 original size:27 final size:27
Alignment explanation
Indices: 32223905--32224082 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
32223895 ATATTGAGTC
* * * *
32223905 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
32223932 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32223959 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
32223987 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
32224014 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
32224041 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
32224068 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
32224083 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Done.