Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold_1025
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38251
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Found at i:3082 original size:25 final size:25
Alignment explanation
Indices: 3006--3083 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
2996 ATTCGGCCTT
*
3006 ATCACACATACACATGTTCACATTC
1 ATCACACATACCCATGTTCACATTC
* ** * *
3031 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATACCCATGTTC-ACATTC
3053 ATCACACATACCCATGTTCACATTC
1 ATCACACATACCCATGTTCACATTC
3078 ATCACA
1 ATCACA
3084 TTGCCCATTC
Statistics
Matches: 37, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 9 0.24
23 7 0.19
24 6 0.16
25 15 0.41
ACGTcount: A:0.31, C:0.33, G:0.08, T:0.28
Consensus pattern (25 bp):
ATCACACATACCCATGTTCACATTC
Found at i:3177 original size:49 final size:47
Alignment explanation
Indices: 2865--3317 Score: 632
Period size: 47 Copynumber: 9.6 Consensus size: 47
2855 CCCTTCGGGA
* * *
2865 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
2912 CTTATCACATATATACACTTTCACATTCAT-ACATTGGCCATTC-G-
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
2956 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
3003 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* ** *
3050 CTTATCACACATACCCA-TGTTCACATTCATCACATTGCCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
3097 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
3144 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
3193 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
3242 CTTATCACATATATACACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATAT--ACACTTTCACATTCATCACATTGGCCATTCGGC
3291 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
3318 TATTCAAATA
Statistics
Matches: 378, Mismatches: 19, Indels: 18
0.91 0.05 0.04
Matches are distributed among these distances:
43 1 0.00
44 26 0.07
45 14 0.04
46 14 0.04
47 183 0.48
49 139 0.37
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:4592 original size:85 final size:85
Alignment explanation
Indices: 4463--4641 Score: 331
Period size: 85 Copynumber: 2.1 Consensus size: 85
4453 TATTTTATTG
*
4463 CCCATGCCCTTTATTTTATTAATCCTTACATAATACACTACCCCAACATGTTTATGACATGTTGT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATACACTACCCCAACATGTTTATGACATGTTGT
4528 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
* *
4548 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATACACTACCCCAACATGTTTATGACATGTTGT
4613 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
4633 CCCATGCTC
1 CCCATGCTC
4642 ATGGCCGGCC
Statistics
Matches: 91, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 91 1.00
ACGTcount: A:0.27, C:0.28, G:0.08, T:0.37
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATACACTACCCCAACATGTTTATGACATGTTGT
TAGCCATAACATCTTGTCCA
Found at i:13268 original size:39 final size:39
Alignment explanation
Indices: 13094--13251 Score: 262
Period size: 39 Copynumber: 4.1 Consensus size: 39
13084 TGTGAATATA
* *
13094 TATACGCGAGAATTATATCTGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
13133 TATAAGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
* *
13172 TATATGCGAGAATTATATCCGGACTTCATGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
*
13211 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
13250 TA
1 TA
13252 CGTGCTGGAC
Statistics
Matches: 111, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 111 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTCAGGTCCGCAGGC
Found at i:16207 original size:48 final size:48
Alignment explanation
Indices: 16136--16241 Score: 167
Period size: 48 Copynumber: 2.2 Consensus size: 48
16126 CAAGATAAAT
* * *
16136 ATATATATGTGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
16184 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATTTGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
*
16232 ATGTGTATAT
1 ATATGTATAT
16242 ATTGTGGCTG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.34
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
Found at i:16425 original size:37 final size:37
Alignment explanation
Indices: 16375--16446 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
16365 GAAATATATT
*
16375 CCGGGTAAGACCCGATGGCTACGTGTGGAGATTATGC
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
*
16412 CCGGGTAAGACCCGATGACTACGTGTGGGGATTAT
1 CCGGGTAAGACCCGATGACTACGTGTGGAGATTAT
16447 TCGAGCTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.35, T:0.22
Consensus pattern (37 bp):
CCGGGTAAGACCCGATGACTACGTGTGGAGATTATGC
Found at i:20614 original size:46 final size:48
Alignment explanation
Indices: 20549--20683 Score: 229
Period size: 46 Copynumber: 2.8 Consensus size: 48
20539 GAAATGATAG
*
20549 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATAGAT-GTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATAGTGA
*
20596 TAAGGCCT-ATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATA-GTGA
20644 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
20684 TACCGATGTG
Statistics
Matches: 83, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
46 32 0.39
47 8 0.10
48 12 0.14
49 31 0.37
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.27
Consensus pattern (48 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAGATAGTGA
Found at i:20666 original size:49 final size:47
Alignment explanation
Indices: 20549--20685 Score: 231
Period size: 49 Copynumber: 2.9 Consensus size: 47
20539 GAAATGATAG
* *
20549 TAAGGCCTAATGGCCGATGTGATGAACGTGAAAGTGTATAGATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
20596 TAAGGCCT-ATGGCCGATGTGATGAATGTGAAAGTGTATATATACGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT--GTGA
20644 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
20686 CCGATGTGAT
Statistics
Matches: 85, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
46 32 0.38
47 8 0.09
48 12 0.14
49 33 0.39
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:20699 original size:29 final size:29
Alignment explanation
Indices: 20657--20714 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
20647 GGCCTAATGG
20657 CCGATGTGATGAATGTGAAAGTGTATATA
1 CCGATGTGATGAATGTGAAAGTGTATATA
20686 CCGATGTGATGAATGTGAAAGTGTATATA
1 CCGATGTGATGAATGTGAAAGTGTATATA
20715 TATGTGATAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (29 bp):
CCGATGTGATGAATGTGAAAGTGTATATA
Found at i:20720 original size:27 final size:28
Alignment explanation
Indices: 20658--20722 Score: 105
Period size: 29 Copynumber: 2.3 Consensus size: 28
20648 GCCTAATGGC
20658 CGATGTGATGAATGTGAAAGTGTATATA
1 CGATGTGATGAATGTGAAAGTGTATATA
20686 CCGATGTGATGAATGTGAAAGTGTATATA
1 -CGATGTGATGAATGTGAAAGTGTATATA
*
20715 -TATGTGAT
1 CGATGTGAT
20723 AGGCCTAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 7 0.20
29 28 0.80
ACGTcount: A:0.34, C:0.05, G:0.28, T:0.34
Consensus pattern (28 bp):
CGATGTGATGAATGTGAAAGTGTATATA
Found at i:20759 original size:77 final size:78
Alignment explanation
Indices: 20608--20762 Score: 294
Period size: 77 Copynumber: 2.0 Consensus size: 78
20598 AGGCCTATGG
20608 CCGATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGT
20673 GAAAGTGTATATA
66 GAAAGTGTATATA
*
20686 CCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGT
20750 GAAAGTGTATATA
66 GAAAGTGTATATA
20763 TATGTGATAA
Statistics
Matches: 76, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
77 40 0.53
78 36 0.47
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (78 bp):
CCGATGTGATGAATGTGAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATA
Found at i:20785 original size:126 final size:124
Alignment explanation
Indices: 20562--20811 Score: 439
Period size: 126 Copynumber: 2.0 Consensus size: 124
20552 GGCCTAATGG
20562 CCGATGTGATGAACGTGAAAGTGTATAGATGTGATAAGGCCTATGGCCGATGTGATGAATGTGAA
1 CCGATGTGATGAACGTGAAAGTGTATAGATGTGATAAGGCCTATGGCCGATGTGATGAATGTGAA
20627 AGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
66 AGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* *
20686 CCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAACGTGAAAGTG--TATAGATGTGATAAGGCCT-ATGGCCGATGTGATGAATGT
*
20750 GAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
63 GAAAGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
20812 TATGTGATAG
Statistics
Matches: 120, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
124 22 0.18
125 6 0.05
126 92 0.77
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (124 bp):
CCGATGTGATGAACGTGAAAGTGTATAGATGTGATAAGGCCTATGGCCGATGTGATGAATGTGAA
AGTGTATATATACGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
Found at i:20795 original size:49 final size:49
Alignment explanation
Indices: 20686--21012 Score: 515
Period size: 49 Copynumber: 6.8 Consensus size: 49
20676 AGTGTATATA
20686 CCGATGTGATGAATGTGAAAGTGTATATATATGTGAT-AGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
20734 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
* *
20783 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGTCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
*
20832 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
20881 CCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGG
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
* * * *
20928 CCGATGTGATGAATGTGAAA--GTATATATATGTGACAGGGCCGAGTGG
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
* * *
20975 CCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
21013 TCCCGAAGGG
Statistics
Matches: 261, Mismatches: 13, Indels: 11
0.92 0.05 0.04
Matches are distributed among these distances:
45 1 0.00
47 88 0.34
48 38 0.15
49 134 0.51
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (49 bp):
CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGG
Found at i:21187 original size:37 final size:37
Alignment explanation
Indices: 21131--21209 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
21121 CCGAGCTCTA
* * * *
21131 AAGACCCGATGACTACGTGTGGGGATTTTTTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
21168 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21205 AAGAC
1 AAGAC
21210 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22800 original size:40 final size:40
Alignment explanation
Indices: 22752--23138 Score: 684
Period size: 40 Copynumber: 9.7 Consensus size: 40
22742 GCAAACACAT
* **
22752 TTGCCTTCGGGTCTTAACCCGGGCATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
22792 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
22832 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
22872 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
22912 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
22952 TTGCCTTCGGGTCATAGCCTGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
22992 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23032 TTGCCTTCGGGTCTTAGCCCGGATATATCATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
23072 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
23112 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
23139 ATCCAATGCT
Statistics
Matches: 330, Mismatches: 17, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 330 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:31680 original size:40 final size:40
Alignment explanation
Indices: 31555--31853 Score: 478
Period size: 40 Copynumber: 7.8 Consensus size: 40
31545 CGCAAACAAT
* *
31555 TTGCCTTCGGGTCTTAACCCGG-CATAT-AACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
31593 TTGCCTTCGGGTCTTAGCCCGGATATATCATC-CGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
31632 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
31672 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
31712 TTGCCTTCGGGTC-TAGCCCGGATATATC-ACTCGCAT-A
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
31749 --G-CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
31786 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
31825 -TGCCTTCGGGTCTTAG-CCGGATATATCAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAA
31854 TGTCATGCAA
Statistics
Matches: 245, Mismatches: 6, Indels: 20
0.90 0.02 0.07
Matches are distributed among these distances:
34 9 0.04
35 16 0.07
36 8 0.03
37 13 0.05
38 46 0.19
39 67 0.27
40 86 0.35
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:31775 original size:114 final size:118
Alignment explanation
Indices: 31555--31852 Score: 481
Period size: 114 Copynumber: 2.6 Consensus size: 118
31545 CGCAAACAAT
* *
31555 TTGCCTTCGGGTCTTAACCCGG-CATAT-AACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
31618 TATCATCCGCATAATTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
66 TATCATCCGCATAA-TGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
31672 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTC-TAGCCCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
*
31736 TATCA-CTCGCAT-A-G-CTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
66 TATCATC-CGCATAATGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
31786 TTGCCTTCGGGTCTTAGCCCGGATATATC-ACTCGCATAA-TGCCTTCGGGTCTTAG-CCGGATA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
31848 TATCA
66 TATCA
31853 ATGTCATGCA
Statistics
Matches: 174, Mismatches: 3, Indels: 13
0.92 0.02 0.07
Matches are distributed among these distances:
112 24 0.14
113 13 0.07
114 64 0.37
115 1 0.01
117 23 0.13
118 25 0.14
119 24 0.14
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.30
Consensus pattern (118 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCTTAGCCCGGATA
TATCATCCGCATAATGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
Done.